AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41229

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41229.t1 MTR_1g049120 94.093 948 43 2 1 945 1 938 0.0 1811
MS.gene41229.t1 MTR_4g036445 60.292 617 189 13 8 581 15 618 0.0 678
MS.gene41229.t1 MTR_1g072780 54.148 687 247 14 280 945 355 994 0.0 660
MS.gene41229.t1 MTR_2g047912 61.039 462 106 10 471 919 272 672 6.75e-162 490
MS.gene41229.t1 MTR_2g047912 55.862 145 61 2 101 243 130 273 2.90e-34 140
MS.gene41229.t1 MTR_2g104120 30.354 649 353 16 287 916 258 826 2.41e-83 287
MS.gene41229.t1 MTR_1g066890 31.610 677 344 20 278 916 307 902 3.95e-83 288
MS.gene41229.t1 MTR_2g104980 55.340 103 45 1 287 389 233 334 1.06e-35 142
MS.gene41229.t1 MTR_6g005840 35.450 189 118 4 283 470 268 453 5.18e-26 115
MS.gene41229.t1 MTR_6g005840 35.450 189 118 4 283 470 226 411 5.49e-26 115
MS.gene41229.t1 MTR_6g005960 35.233 193 121 4 283 474 208 397 5.34e-25 112
MS.gene41229.t1 MTR_7g113180 32.402 179 117 3 287 462 87 264 5.46e-24 109
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41229.t1 AT3G09670 36.856 388 193 12 286 623 196 581 4.50e-60 219
MS.gene41229.t1 AT3G09670 36.856 388 193 12 286 623 196 581 4.50e-60 219
MS.gene41229.t1 AT5G02950 39.643 280 138 8 290 561 98 354 2.61e-53 197
MS.gene41229.t1 AT5G02950 53.846 78 36 0 837 914 546 623 6.51e-18 89.4
MS.gene41229.t1 AT5G02950 39.643 280 138 8 290 561 98 354 2.61e-53 197
MS.gene41229.t1 AT5G02950 53.846 78 36 0 837 914 546 623 6.51e-18 89.4
MS.gene41229.t1 AT3G54760 38.395 349 137 8 575 921 470 742 2.96e-53 199
MS.gene41229.t1 AT3G54760 38.395 349 137 8 575 921 501 773 4.13e-53 199
MS.gene41229.t1 AT5G40340 36.683 199 113 7 287 478 125 317 2.05e-25 114
MS.gene41229.t1 AT5G40340 36.683 199 113 7 287 478 125 317 2.59e-25 113
MS.gene41229.t1 AT5G27650 33.702 181 112 5 287 462 171 348 1.55e-23 108
MS.gene41229.t1 AT3G05430 26.087 299 196 7 177 462 24 310 1.47e-22 104
MS.gene41229.t1 AT3G05430 26.087 299 196 7 177 462 24 310 1.70e-22 104
MS.gene41229.t1 AT3G27860 28.333 300 178 14 281 570 55 327 2.33e-15 81.3
MS.gene41229.t1 AT3G27860 28.333 300 178 14 281 570 55 327 2.33e-15 81.3

Find 193 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTATTTCGTCGCATATTT+TGG 0.097709 1.4:-35916143 MS.gene41229:CDS
CCTCCACAATGTTGTATTTC+TGG 0.135555 1.4:+35915708 None:intergenic
GCTAAGAAGTTCAACATATT+TGG 0.166046 1.4:-35914427 MS.gene41229:CDS
AACAAAATGTTTAAGCGTTT+TGG 0.179710 1.4:-35914547 MS.gene41229:CDS
GACCATATTAACTTCAAAAT+TGG 0.197232 1.4:+35914303 None:intergenic
TTCTCTCTCAGATATGGTTT+GGG 0.239508 1.4:-35916255 MS.gene41229:CDS
TCTTCAAATTCAAATGTTTC+AGG 0.243949 1.4:+35914958 None:intergenic
TTTGTTAAGGTTTGCTTCTA+AGG 0.244285 1.4:+35914564 None:intergenic
GTCTCAAGACGAGTCGAATA+TGG 0.258530 1.4:-35915993 MS.gene41229:CDS
GGTGATTCTGTTGGGGTAGT+TGG 0.264248 1.4:-35917107 MS.gene41229:CDS
TGAGTTGGGTAGCGTTGTTT+TGG 0.301534 1.4:-35917009 MS.gene41229:CDS
TACGGCTGGCTTTGATCGTT+TGG 0.305489 1.4:-35915793 MS.gene41229:CDS
TTTCTCTCTCAGATATGGTT+TGG 0.312975 1.4:-35916256 MS.gene41229:CDS
GTGACCCAGTTCCAACTATT+GGG 0.320240 1.4:+35914980 None:intergenic
GGTGACCCAGTTCCAACTAT+TGG 0.324538 1.4:+35914979 None:intergenic
GACACATCTGATTCATTATC+AGG 0.324654 1.4:+35915225 None:intergenic
CGATTAACTTGGGCTGGCTT+TGG 0.335599 1.4:+35914715 None:intergenic
TCAGGTGAAACCAGATTATC+TGG 0.347288 1.4:+35915477 None:intergenic
GGCTTTGGTGACTTGGAAGC+TGG 0.350982 1.4:+35914730 None:intergenic
AACAATTGGTGACTTCAATA+TGG 0.352969 1.4:-35916937 MS.gene41229:CDS
ATCATGTCATAGGTGTCTTT+AGG 0.355766 1.4:+35915951 None:intergenic
AGTATCCGGTTGAGGAATCT+AGG 0.358039 1.4:-35917076 MS.gene41229:CDS
GGTGACTTGGAAGCTGGCTT+TGG 0.358660 1.4:+35914736 None:intergenic
CACCAGCAATTTGCACATCA+TGG 0.371992 1.4:+35917180 None:intergenic
AATCACACTGAGGAGGTTAA+AGG 0.372012 1.4:-35916666 MS.gene41229:intron
CCATCACCATCAGGAGAATC+TGG 0.383648 1.4:+35915507 None:intergenic
CGGATATATTTGGTATTAAG+AGG 0.384275 1.4:-35915011 MS.gene41229:CDS
TGATTTGTGGTGATTCTGTT+GGG 0.386475 1.4:-35917115 MS.gene41229:CDS
TGCACTGGTTTCTGTTGCAC+TGG 0.388524 1.4:+35914850 None:intergenic
TGCACTGGTTTCTGTTGCAC+TGG 0.388524 1.4:+35914865 None:intergenic
TTGGGCTGGCTTTGGTGACT+TGG 0.390533 1.4:+35914723 None:intergenic
AGAAGTCACCCATGGTGGCC+TGG 0.392403 1.4:-35916224 MS.gene41229:CDS
GGTGACTTAACAGCTGGCTT+TGG 0.393998 1.4:+35914757 None:intergenic
TTCCGTGATGGTTGTTGCAC+TGG 0.394785 1.4:+35914820 None:intergenic
AGAGATCGAAAACCATTTCC+TGG 0.398045 1.4:+35914326 None:intergenic
ATTGCTGGTGAAACCCTAGA+TGG 0.398415 1.4:-35917167 MS.gene41229:CDS
CACATATCACAGACCCATCT+AGG 0.398644 1.4:+35917153 None:intergenic
CCCAACTGATGAGGATGATC+AGG 0.400132 1.4:-35915199 MS.gene41229:CDS
TCACTGCGTCACCTTCTATA+AGG 0.403119 1.4:-35915299 MS.gene41229:CDS
TGTGAGCGGTGTTTCTGCTT+TGG 0.414830 1.4:-35916769 MS.gene41229:CDS
TCTGTTTCAGATTCCTTAAG+TGG 0.417444 1.4:+35914523 None:intergenic
CTGTAGTTGTGGCTGCTGAT+TGG 0.424377 1.4:-35915050 MS.gene41229:CDS
GGCTTTGGTGACTTAACAGC+TGG 0.426756 1.4:+35914751 None:intergenic
GAAGTCACCCATGGTGGCCT+GGG 0.429264 1.4:-35916223 MS.gene41229:CDS
AAGATATGAGCGACACGTAT+TGG 0.429636 1.4:-35914939 MS.gene41229:CDS
ATTCTGTTGGGGTAGTTGGT+GGG 0.439002 1.4:-35917103 MS.gene41229:CDS
TCAAAGTCTCCATCTGCCTT+TGG 0.439286 1.4:+35915255 None:intergenic
ACAAAGTCATCGTTTAAAAT+CGG 0.439705 1.4:-35915351 MS.gene41229:CDS
GCAACGGTGCATGGCTCCCT+TGG 0.441735 1.4:+35916465 None:intergenic
TTCCATCGCGCAACGGTGCA+TGG 0.449140 1.4:+35916456 None:intergenic
CAAGGTGTCAAATGGTGGTC+AGG 0.449537 1.4:-35916420 MS.gene41229:CDS
TGGTCGGACTCCAGATAATC+TGG 0.450902 1.4:-35915487 MS.gene41229:CDS
GTGAGAGATGAAGCAGTAGT+TGG 0.452544 1.4:-35916978 MS.gene41229:CDS
CTAGAACACTTCCTTATAGA+AGG 0.452692 1.4:+35915288 None:intergenic
GCTTTAGCAGGTAGTTCTGT+AGG 0.454456 1.4:-35916861 MS.gene41229:CDS
CACCTGAACATTCCAAGAAA+AGG 0.455137 1.4:-35915461 MS.gene41229:CDS
AGTTGGTGGGACCGAGTATC+CGG 0.455528 1.4:-35917090 MS.gene41229:CDS
GATTCTGTTGGGGTAGTTGG+TGG 0.455837 1.4:-35917104 MS.gene41229:CDS
TAGTTCAGAAATAGTTCATC+AGG 0.456384 1.4:-35916318 MS.gene41229:CDS
ACCCATGATGTGCAAATTGC+TGG 0.460593 1.4:-35917182 MS.gene41229:CDS
TGCACTGGTTTCTGTTGCGC+TGG 0.460959 1.4:+35914880 None:intergenic
GGCTTACGATTAACTTGGGC+TGG 0.461800 1.4:+35914709 None:intergenic
AATCTGGAGTCCCATTCATT+AGG 0.464940 1.4:+35915523 None:intergenic
TATAGGGCTTACGATTAACT+TGG 0.466075 1.4:+35914704 None:intergenic
AAAGCGTAAATATAAGTTCA+AGG 0.468189 1.4:-35915586 MS.gene41229:CDS
GTGATTTGTGGTGATTCTGT+TGG 0.468729 1.4:-35917116 MS.gene41229:CDS
TATTGAGACTGAGGAAAACT+TGG 0.469804 1.4:-35916528 MS.gene41229:CDS
TAGATGGGTCTGTGATATGT+GGG 0.470687 1.4:-35917151 MS.gene41229:CDS
TTTGGTGACTTAGCAGAGAC+TGG 0.474173 1.4:+35914775 None:intergenic
TCTTAAAGACCACTCTTGCC+CGG 0.475118 1.4:+35914482 None:intergenic
CTCCATCTGCCTTTGGAGAT+CGG 0.475922 1.4:+35915262 None:intergenic
TTCTGTTGTTGCAGGTTCGT+CGG 0.476309 1.4:-35916555 MS.gene41229:intron
AATCGGTGATTGTATTCGTC+GGG 0.480709 1.4:-35915334 MS.gene41229:CDS
GAGTGCTATTAATTGTGCTT+TGG 0.482515 1.4:-35916021 MS.gene41229:CDS
ACAACCCTAGATTCCTCAAC+CGG 0.485275 1.4:+35917071 None:intergenic
TCTCAAGACGAGTCGAATAT+GGG 0.485338 1.4:-35915992 MS.gene41229:CDS
TCCTGATCATCCTCATCAGT+TGG 0.488623 1.4:+35915198 None:intergenic
GTTGTAGAATTTGAAGAAGC+CGG 0.488694 1.4:-35917053 MS.gene41229:CDS
GCTATCTTCACTTCAGCTTG+TGG 0.491218 1.4:-35915145 MS.gene41229:CDS
GAAGCTTTGAACAGTGCACT+TGG 0.493568 1.4:+35914370 None:intergenic
CATTTCGGAGTCATCGGCGT+AGG 0.493727 1.4:+35915419 None:intergenic
ACCAGCAATTTGCACATCAT+GGG 0.496336 1.4:+35917181 None:intergenic
TTGTTAAGGTTTGCTTCTAA+GGG 0.496576 1.4:+35914565 None:intergenic
AGGATGTCAGACCTAATGAA+TGG 0.497931 1.4:-35915534 MS.gene41229:CDS
TGCAACACAAGACCAGGAAA+TGG 0.498131 1.4:-35914338 MS.gene41229:CDS
GGAGTCCGACCATCACCATC+AGG 0.498959 1.4:+35915498 None:intergenic
AAAGTCAACAAGGTGTCAAA+TGG 0.503103 1.4:-35916428 MS.gene41229:CDS
CTTTAGCAGGTAGTTCTGTA+GGG 0.504598 1.4:-35916860 MS.gene41229:CDS
ACAGTTGTCGAAACAACAAT+TGG 0.506584 1.4:-35916951 MS.gene41229:CDS
ATCTTGCATTTCGGAGTCAT+CGG 0.509912 1.4:+35915413 None:intergenic
TGCACCGTTGCGCGATGGAA+AGG 0.511662 1.4:-35916453 MS.gene41229:CDS
CTAGATGGGTCTGTGATATG+TGG 0.514325 1.4:-35917152 MS.gene41229:CDS
CACTGTGCATCCATCAAAGA+AGG 0.517034 1.4:-35915562 MS.gene41229:CDS
TATCTTGTGATCTGCAGCCT+CGG 0.517608 1.4:+35916905 None:intergenic
ATTCCTATGCTCTTCAATTG+TGG 0.519415 1.4:+35916061 None:intergenic
TTGTAGAATTTGAAGAAGCC+GGG 0.519547 1.4:-35917052 MS.gene41229:CDS
CACTTGGAGTGTAATTAAGC+TGG 0.521123 1.4:+35914386 None:intergenic
GAATGCAGCGGAAGTTGAGT+TGG 0.521460 1.4:-35917024 MS.gene41229:CDS
TCAGAAAAGTATACTCTCCA+AGG 0.523646 1.4:+35915112 None:intergenic
CTATCCGAGTTTCCTACGGC+TGG 0.525255 1.4:-35915807 MS.gene41229:CDS
CCTGATCATCCTCATCAGTT+GGG 0.525465 1.4:+35915199 None:intergenic
TTCCGCTGCATTCTCACTCC+CGG 0.526328 1.4:+35917034 None:intergenic
AAGTTGATAGAGTAAGCAGC+CGG 0.526372 1.4:-35914501 MS.gene41229:CDS
AAGTTCATAACAAGCTCAGC+AGG 0.528013 1.4:+35914607 None:intergenic
AGCAATGATGATGCTTTAGC+AGG 0.528080 1.4:-35916873 MS.gene41229:CDS
ATTTCGGAGTCATCGGCGTA+GGG 0.529828 1.4:+35915420 None:intergenic
TTTCAGAAATTCTGTAGTTG+TGG 0.530415 1.4:-35915061 MS.gene41229:CDS
ACATATTCTATAAGATTCAA+AGG 0.532546 1.4:+35915837 None:intergenic
GGATGTCAGACCTAATGAAT+GGG 0.533475 1.4:-35915533 MS.gene41229:CDS
AGTAAGCAGCCGGGCAAGAG+TGG 0.535181 1.4:-35914491 MS.gene41229:CDS
GCGACACGTATTGGACTGAC+AGG 0.535367 1.4:-35914930 MS.gene41229:CDS
AAACTAAGAGATAGAAAAGC+CGG 0.536173 1.4:-35916365 MS.gene41229:CDS
AGATTCCTCAACCGGATACT+CGG 0.539506 1.4:+35917079 None:intergenic
GACGGATCAAATATCTGCCC+AGG 0.544596 1.4:+35916206 None:intergenic
TTTGGAGCTTGTGACTGCTA+AGG 0.547748 1.4:-35915775 MS.gene41229:CDS
TTGGGGACAAAACATTTGCA+TGG 0.547879 1.4:-35916124 MS.gene41229:CDS
GTCAGACAGTAGAGAACACC+GGG 0.548651 1.4:-35915923 MS.gene41229:CDS
AATGCAGCGGAAGTTGAGTT+GGG 0.550361 1.4:-35917023 MS.gene41229:CDS
AAACATGCACTTGTGAAGCC+TGG 0.550664 1.4:-35916341 MS.gene41229:CDS
TCTCTCTCAGATATGGTTTG+GGG 0.553140 1.4:-35916254 MS.gene41229:CDS
AGCCATGCACCGTTGCGCGA+TGG 0.555384 1.4:-35916458 MS.gene41229:CDS
AACACTATCCGAGTTTCCTA+CGG 0.556285 1.4:-35915811 MS.gene41229:CDS
CAATATGGTGGATGCTGCCG+AGG 0.556556 1.4:-35916922 MS.gene41229:CDS
GCCCTCTCAGATGCATCTGA+CGG 0.559014 1.4:+35916188 None:intergenic
CCAGATTCTCCTGATGGTGA+TGG 0.559245 1.4:-35915507 MS.gene41229:CDS
AAATCGGTGATTGTATTCGT+CGG 0.559399 1.4:-35915335 MS.gene41229:CDS
ATGACTCCGAAATGCAAGAT+GGG 0.560146 1.4:-35915410 MS.gene41229:CDS
GACACTCAAGTTACTGACCA+AGG 0.560989 1.4:-35916482 MS.gene41229:CDS
TGGGACCGAGTATCCGGTTG+AGG 0.563199 1.4:-35917084 MS.gene41229:CDS
TGAACTATTTCTGAACTACC+AGG 0.564289 1.4:+35916323 None:intergenic
TGACCCAGTTCCAACTATTG+GGG 0.565841 1.4:+35914981 None:intergenic
ATATCTGCCCAGGCCACCAT+GGG 0.565877 1.4:+35916216 None:intergenic
GATGACTCCGAAATGCAAGA+TGG 0.571916 1.4:-35915411 MS.gene41229:CDS
CAGAAAAGTATACTCTCCAA+GGG 0.576757 1.4:+35915113 None:intergenic
ACTTATTTCTTGTTGAACCC+CGG 0.576846 1.4:+35915905 None:intergenic
GACCGATCTCCAAAGGCAGA+TGG 0.577314 1.4:-35915264 MS.gene41229:CDS
AAAGCCAGCCGTAGGAAACT+CGG 0.577817 1.4:+35915803 None:intergenic
CCTTGAAAAGTGCAACTCAA+AGG 0.579594 1.4:-35916814 MS.gene41229:CDS
AATAAGTATCACACATGAGG+TGG 0.580958 1.4:-35915889 MS.gene41229:CDS
GGGACTCCAGATTCTCCTGA+TGG 0.585166 1.4:-35915513 MS.gene41229:CDS
TTCTAGTGACCGATCTCCAA+AGG 0.585712 1.4:-35915271 MS.gene41229:CDS
GGTCATAATGAAGTGATTTG+TGG 0.586282 1.4:-35917128 MS.gene41229:CDS
TGTTGATGCAACACAAGACC+AGG 0.588104 1.4:-35914344 MS.gene41229:CDS
AATATCTGCCCAGGCCACCA+TGG 0.588370 1.4:+35916215 None:intergenic
AGATGGGTCTGTGATATGTG+GGG 0.588914 1.4:-35917150 MS.gene41229:CDS
TTCTGAAAGCAATCCTGCCG+AGG 0.595525 1.4:-35914668 MS.gene41229:CDS
TCTCCACAATTGAAGAGCAT+AGG 0.596184 1.4:-35916064 MS.gene41229:CDS
GTATCCGGTTGAGGAATCTA+GGG 0.602732 1.4:-35917075 MS.gene41229:CDS
AAGCACAATTAATAGCACTC+TGG 0.605736 1.4:+35916024 None:intergenic
TTGCTGGTGAAACCCTAGAT+GGG 0.606134 1.4:-35917166 MS.gene41229:CDS
GTCAACAAGGTGTCAAATGG+TGG 0.607439 1.4:-35916425 MS.gene41229:CDS
ATAGGGCTTACGATTAACTT+GGG 0.608401 1.4:+35914705 None:intergenic
ACATTGTGGAGGTGTTGACC+CGG 0.610706 1.4:-35915697 MS.gene41229:CDS
ATTCTCCTGATGGTGATGGT+CGG 0.611694 1.4:-35915503 MS.gene41229:CDS
GATTTGTGGTGATTCTGTTG+GGG 0.613739 1.4:-35917114 MS.gene41229:CDS
ACATATCACAGACCCATCTA+GGG 0.617936 1.4:+35917154 None:intergenic
CAACAATCTGATGTACATGA+GGG 0.618201 1.4:-35916741 MS.gene41229:CDS
TAAGGGAACAGAATTGAGCT+CGG 0.619176 1.4:+35914582 None:intergenic
TAAGAAATGTGTAGATGCAG+AGG 0.619624 1.4:-35914464 MS.gene41229:CDS
AGAAATAAGTATCACACATG+AGG 0.622833 1.4:-35915892 MS.gene41229:CDS
TCCGTCAGATGCATCTGAGA+GGG 0.624122 1.4:-35916189 MS.gene41229:CDS
AGTTGATAGAGTAAGCAGCC+GGG 0.624544 1.4:-35914500 MS.gene41229:CDS
AACCAGTGCAACAACCATCA+CGG 0.625880 1.4:-35914822 MS.gene41229:CDS
TCAACAATCTGATGTACATG+AGG 0.628279 1.4:-35916742 MS.gene41229:CDS
GATGGGTCTGTGATATGTGG+GGG 0.630525 1.4:-35917149 MS.gene41229:CDS
TGTGTCTCTCCCAACTGATG+AGG 0.631262 1.4:-35915208 MS.gene41229:CDS
AAACGATCAAAGCCAGCCGT+AGG 0.635310 1.4:+35915795 None:intergenic
AGCCGGGAGTGAGAATGCAG+CGG 0.635774 1.4:-35917036 MS.gene41229:CDS
GCATTGTCATCTATATAACC+AGG 0.644206 1.4:+35914631 None:intergenic
CTTGTGGCACAAGAACCCCT+TGG 0.646167 1.4:-35915129 MS.gene41229:CDS
GTCGGTGTCTATTGAGACTG+AGG 0.648701 1.4:-35916537 MS.gene41229:CDS
ATCCGTCAGATGCATCTGAG+AGG 0.653593 1.4:-35916190 MS.gene41229:CDS
GACCCAGTTCCAACTATTGG+GGG 0.653992 1.4:+35914982 None:intergenic
AATTGGTGACTTCAATATGG+TGG 0.655107 1.4:-35916934 MS.gene41229:CDS
TTTAGCAGGTAGTTCTGTAG+GGG 0.655647 1.4:-35916859 MS.gene41229:CDS
GCAAAGTGAGAAGTCACCCA+TGG 0.661126 1.4:-35916232 MS.gene41229:CDS
ACACTCAAGTTACTGACCAA+GGG 0.665022 1.4:-35916481 MS.gene41229:CDS
AGTCAGACAGTAGAGAACAC+CGG 0.667248 1.4:-35915924 MS.gene41229:CDS
TAGATAGTGAAGATCAACAA+GGG 0.673594 1.4:-35916710 MS.gene41229:CDS
ACTGACAGGGTCATTGACAA+TGG 0.674175 1.4:-35914916 MS.gene41229:CDS
AAGTGAGAAGTCACCCATGG+TGG 0.677906 1.4:-35916229 MS.gene41229:CDS
AACAATCTGATGTACATGAG+GGG 0.678034 1.4:-35916740 MS.gene41229:CDS
AACAGTGAATCACACTGAGG+AGG 0.679331 1.4:-35916673 MS.gene41229:CDS
TTGCACATCATGGGTCACAG+TGG 0.689868 1.4:+35917190 None:intergenic
ATAGCTGACAACGATGTGAG+CGG 0.694340 1.4:-35916783 MS.gene41229:CDS
TTGCCAGAAATACAACATTG+TGG 0.702327 1.4:-35915711 MS.gene41229:CDS
TTGTCATCTATATAACCAGG+AGG 0.713037 1.4:+35914634 None:intergenic
CCAGAAATACAACATTGTGG+AGG 0.718025 1.4:-35915708 MS.gene41229:CDS
CGACACGTATTGGACTGACA+GGG 0.727026 1.4:-35914929 MS.gene41229:CDS
ATAGATAGTGAAGATCAACA+AGG 0.747974 1.4:-35916711 MS.gene41229:CDS
AGAAAAGTATACTCTCCAAG+GGG 0.750501 1.4:+35915114 None:intergenic
TGAAACAGTGAATCACACTG+AGG 0.797905 1.4:-35916676 MS.gene41229:CDS
TCAGACAGTAGAGAACACCG+GGG 0.900900 1.4:-35915922 MS.gene41229:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATATTCTATAAGATTCAA+AGG + chr1.4:35915684-35915703 None:intergenic 20.0%
!! ATTGAAAAAGTTAATGAAGT+TGG - chr1.4:35915123-35915142 MS.gene41229:CDS 20.0%
!! TTGAAAAAGTTAATGAAGTT+GGG - chr1.4:35915124-35915143 MS.gene41229:CDS 20.0%
! AAAGCGTAAATATAAGTTCA+AGG - chr1.4:35915932-35915951 MS.gene41229:CDS 25.0%
! GACCATATTAACTTCAAAAT+TGG + chr1.4:35917218-35917237 None:intergenic 25.0%
! TCTTCAAATTCAAATGTTTC+AGG + chr1.4:35916563-35916582 None:intergenic 25.0%
!! AACAAAATGTTTAAGCGTTT+TGG - chr1.4:35916971-35916990 MS.gene41229:CDS 25.0%
!! AACGCTTAAACATTTTGTTA+AGG + chr1.4:35916970-35916989 None:intergenic 25.0%
!! ACAAAGTCATCGTTTAAAAT+CGG - chr1.4:35916167-35916186 MS.gene41229:CDS 25.0%
!! ACTTATATTTACGCTTTTGA+CGG + chr1.4:35915929-35915948 None:intergenic 25.0%
!!! AGAATTGTTTTTCTTGGTAT+AGG + chr1.4:35916834-35916853 None:intergenic 25.0%
!!! ATCTAAGCTAAAGCATTTTA+GGG - chr1.4:35915425-35915444 MS.gene41229:CDS 25.0%
!!! CTCCAATTTTGAAGTTAATA+TGG - chr1.4:35917213-35917232 MS.gene41229:CDS 25.0%
!!! CTTGCTTTTAATCGTTTTAA+GGG - chr1.4:35915774-35915793 MS.gene41229:CDS 25.0%
!!! GAATTGTTTTTCTTGGTATA+GGG + chr1.4:35916833-35916852 None:intergenic 25.0%
AAACTAAGAGATAGAAAAGC+CGG - chr1.4:35915153-35915172 MS.gene41229:CDS 30.0%
AGAAATAAGTATCACACATG+AGG - chr1.4:35915626-35915645 MS.gene41229:CDS 30.0%
ATAGATAGTGAAGATCAACA+AGG - chr1.4:35914807-35914826 MS.gene41229:CDS 30.0%
ATCCATCAAAGAAGGAAAAA+AGG - chr1.4:35915964-35915983 MS.gene41229:CDS 30.0%
CATCGTCAACAAAAAATGAA+TGG + chr1.4:35915848-35915867 None:intergenic 30.0%
CGGATATATTTGGTATTAAG+AGG - chr1.4:35916507-35916526 MS.gene41229:CDS 30.0%
GCTAAGAAGTTCAACATATT+TGG - chr1.4:35917091-35917110 MS.gene41229:CDS 30.0%
TAGATAGTGAAGATCAACAA+GGG - chr1.4:35914808-35914827 MS.gene41229:CDS 30.0%
TAGTTCAGAAATAGTTCATC+AGG - chr1.4:35915200-35915219 MS.gene41229:CDS 30.0%
TCAACAAAAAATGAATGGTC+CGG + chr1.4:35915843-35915862 None:intergenic 30.0%
TTTCAGAAATTCTGTAGTTG+TGG - chr1.4:35916457-35916476 MS.gene41229:CDS 30.0%
! AACAATTGGTGACTTCAATA+TGG - chr1.4:35914581-35914600 MS.gene41229:CDS 30.0%
! ATTTTACGCACGGATATATT+TGG - chr1.4:35916497-35916516 MS.gene41229:CDS 30.0%
! CTGACTTTTAATCATGTCAT+AGG + chr1.4:35915580-35915599 None:intergenic 30.0%
! GATTTTAAACGATGACTTTG+TGG + chr1.4:35916168-35916187 None:intergenic 30.0%
! TATATAACCAGGAGGTTTTT+CGG + chr1.4:35916879-35916898 None:intergenic 30.0%
! TTGTTAAGGTTTGCTTCTAA+GGG + chr1.4:35916956-35916975 None:intergenic 30.0%
! TTTGTTAAGGTTTGCTTCTA+AGG + chr1.4:35916957-35916976 None:intergenic 30.0%
!! CATCTAAGCTAAAGCATTTT+AGG - chr1.4:35915424-35915443 MS.gene41229:CDS 30.0%
!! GCTTGCTTTTAATCGTTTTA+AGG - chr1.4:35915773-35915792 MS.gene41229:CDS 30.0%
!! GCTTTCAGAATTGTTTTTCT+TGG + chr1.4:35916840-35916859 None:intergenic 30.0%
!!! ATCCTTTTTTCCTTCTTTGA+TGG + chr1.4:35915969-35915988 None:intergenic 30.0%
!!! GTTTTTTCCAGTTTAACTAC+TGG - chr1.4:35914888-35914907 MS.gene41229:CDS 30.0%
AAATCGGTGATTGTATTCGT+CGG - chr1.4:35916183-35916202 MS.gene41229:CDS 35.0%
AACAATCTGATGTACATGAG+GGG - chr1.4:35914778-35914797 MS.gene41229:CDS 35.0%
AAGCACAATTAATAGCACTC+TGG + chr1.4:35915497-35915516 None:intergenic 35.0%
AATAAGTATCACACATGAGG+TGG - chr1.4:35915629-35915648 MS.gene41229:CDS 35.0%
ACAGTTGTCGAAACAACAAT+TGG - chr1.4:35914567-35914586 MS.gene41229:CDS 35.0%
ACGATTACCAGTAGTTAAAC+TGG + chr1.4:35914898-35914917 None:intergenic 35.0%
AGTTTAACTACTGGTAATCG+TGG - chr1.4:35914897-35914916 MS.gene41229:CDS 35.0%
ATAGGGCTTACGATTAACTT+GGG + chr1.4:35916816-35916835 None:intergenic 35.0%
ATCATGTCATAGGTGTCTTT+AGG + chr1.4:35915570-35915589 None:intergenic 35.0%
ATTCCTATGCTCTTCAATTG+TGG + chr1.4:35915460-35915479 None:intergenic 35.0%
CAACAAAAAATGAATGGTCC+GGG + chr1.4:35915842-35915861 None:intergenic 35.0%
CAACAATCTGATGTACATGA+GGG - chr1.4:35914777-35914796 MS.gene41229:CDS 35.0%
CTAGAACACTTCCTTATAGA+AGG + chr1.4:35916233-35916252 None:intergenic 35.0%
CTGCCAAAAGAAAAAGAAGA+AGG - chr1.4:35915234-35915253 MS.gene41229:CDS 35.0%
GACACATCTGATTCATTATC+AGG + chr1.4:35916296-35916315 None:intergenic 35.0%
GCAACTCCTGTAGTTAAAAA+AGG - chr1.4:35915897-35915916 MS.gene41229:CDS 35.0%
GCATTGTCATCTATATAACC+AGG + chr1.4:35916890-35916909 None:intergenic 35.0%
GGTCATAATGAAGTGATTTG+TGG - chr1.4:35914390-35914409 MS.gene41229:CDS 35.0%
GTTGTAGAATTTGAAGAAGC+CGG - chr1.4:35914465-35914484 MS.gene41229:CDS 35.0%
TAAGAAATGTGTAGATGCAG+AGG - chr1.4:35917054-35917073 MS.gene41229:CDS 35.0%
TATAGGGCTTACGATTAACT+TGG + chr1.4:35916817-35916836 None:intergenic 35.0%
TATTGAGACTGAGGAAAACT+TGG - chr1.4:35914990-35915009 MS.gene41229:CDS 35.0%
TCAACAATCTGATGTACATG+AGG - chr1.4:35914776-35914795 MS.gene41229:CDS 35.0%
TCTGTTTCAGATTCCTTAAG+TGG + chr1.4:35916998-35917017 None:intergenic 35.0%
TGGAAAGGAAAAAGTCAACA+AGG - chr1.4:35915080-35915099 MS.gene41229:CDS 35.0%
TTCTCTCTCAGATATGGTTT+GGG - chr1.4:35915263-35915282 MS.gene41229:CDS 35.0%
TTGCCAGAAATACAACATTG+TGG - chr1.4:35915807-35915826 MS.gene41229:CDS 35.0%
TTGTAGAATTTGAAGAAGCC+GGG - chr1.4:35914466-35914485 MS.gene41229:CDS 35.0%
TTGTCATCTATATAACCAGG+AGG + chr1.4:35916887-35916906 None:intergenic 35.0%
TTTCTCTCTCAGATATGGTT+TGG - chr1.4:35915262-35915281 MS.gene41229:CDS 35.0%
! AAAGTCAACAAGGTGTCAAA+TGG - chr1.4:35915090-35915109 MS.gene41229:CDS 35.0%
! AATTGGTGACTTCAATATGG+TGG - chr1.4:35914584-35914603 MS.gene41229:CDS 35.0%
! ACTTATTTCTTGTTGAACCC+CGG + chr1.4:35915616-35915635 None:intergenic 35.0%
! AGAAAAGTATACTCTCCAAG+GGG + chr1.4:35916407-35916426 None:intergenic 35.0%
! ATATAACCAGGAGGTTTTTC+GGG + chr1.4:35916878-35916897 None:intergenic 35.0%
! CAGAAAAGTATACTCTCCAA+GGG + chr1.4:35916408-35916427 None:intergenic 35.0%
! CTATTTCGTCGCATATTTTG+GGG - chr1.4:35915377-35915396 MS.gene41229:CDS 35.0%
! GAGTGCTATTAATTGTGCTT+TGG - chr1.4:35915497-35915516 MS.gene41229:CDS 35.0%
! TCAGAAAAGTATACTCTCCA+AGG + chr1.4:35916409-35916428 None:intergenic 35.0%
! TCGCCTTCTTCTTTTTCTTT+TGG + chr1.4:35915240-35915259 None:intergenic 35.0%
! TGATTTGTGGTGATTCTGTT+GGG - chr1.4:35914403-35914422 MS.gene41229:CDS 35.0%
! TTGGAAAGAGATTTTACGCA+CGG - chr1.4:35916487-35916506 MS.gene41229:CDS 35.0%
! TTTTCTCCCATCTTGCATTT+CGG + chr1.4:35916117-35916136 None:intergenic 35.0%
!! GCTATTTCGTCGCATATTTT+GGG - chr1.4:35915376-35915395 MS.gene41229:CDS 35.0%
!! GGAGAGTATACTTTTCTGAA+TGG - chr1.4:35916410-35916429 MS.gene41229:CDS 35.0%
!! TGAACTATTTCTGAACTACC+AGG + chr1.4:35915198-35915217 None:intergenic 35.0%
!!! GTGGTTTCTGAAACATTTTC+TGG + chr1.4:35914312-35914331 None:intergenic 35.0%
!!! TGCTATTTCGTCGCATATTT+TGG - chr1.4:35915375-35915394 MS.gene41229:CDS 35.0%
!!! TTGCTGCCTTTTTTAACTAC+AGG + chr1.4:35915906-35915925 None:intergenic 35.0%
!!! TTTTTCTGGTTTTTCCGTGA+TGG + chr1.4:35916713-35916732 None:intergenic 35.0%
AACACTATCCGAGTTTCCTA+CGG - chr1.4:35915707-35915726 MS.gene41229:CDS 40.0%
AAGATATGAGCGACACGTAT+TGG - chr1.4:35916579-35916598 MS.gene41229:intron 40.0%
AAGTTCATAACAAGCTCAGC+AGG + chr1.4:35916914-35916933 None:intergenic 40.0%
AATCACACTGAGGAGGTTAA+AGG - chr1.4:35914852-35914871 MS.gene41229:CDS 40.0%
AATCGGTGATTGTATTCGTC+GGG - chr1.4:35916184-35916203 MS.gene41229:CDS 40.0%
ACACTCAAGTTACTGACCAA+GGG - chr1.4:35915037-35915056 MS.gene41229:CDS 40.0%
ACATATCACAGACCCATCTA+GGG + chr1.4:35914367-35914386 None:intergenic 40.0%
ACCAGCAATTTGCACATCAT+GGG + chr1.4:35914340-35914359 None:intergenic 40.0%
AGAGATCGAAAACCATTTCC+TGG + chr1.4:35917195-35917214 None:intergenic 40.0%
AGGATGTCAGACCTAATGAA+TGG - chr1.4:35915984-35916003 MS.gene41229:CDS 40.0%
ATCTTGCATTTCGGAGTCAT+CGG + chr1.4:35916108-35916127 None:intergenic 40.0%
ATGACTCCGAAATGCAAGAT+GGG - chr1.4:35916108-35916127 MS.gene41229:CDS 40.0%
CACCTGAACATTCCAAGAAA+AGG - chr1.4:35916057-35916076 MS.gene41229:CDS 40.0%
CACTTGGAGTGTAATTAAGC+TGG + chr1.4:35917135-35917154 None:intergenic 40.0%
CCAGAAATACAACATTGTGG+AGG - chr1.4:35915810-35915829 MS.gene41229:CDS 40.0%
CCTCCACAATGTTGTATTTC+TGG + chr1.4:35915813-35915832 None:intergenic 40.0%
GATTTGTGGTGATTCTGTTG+GGG - chr1.4:35914404-35914423 MS.gene41229:CDS 40.0%
GGATGTCAGACCTAATGAAT+GGG - chr1.4:35915985-35916004 MS.gene41229:CDS 40.0%
TAAGGGAACAGAATTGAGCT+CGG + chr1.4:35916939-35916958 None:intergenic 40.0%
TAGATGGGTCTGTGATATGT+GGG - chr1.4:35914367-35914386 MS.gene41229:CDS 40.0%
TCAGGTGAAACCAGATTATC+TGG + chr1.4:35916044-35916063 None:intergenic 40.0%
TCTCAAGACGAGTCGAATAT+GGG - chr1.4:35915526-35915545 MS.gene41229:CDS 40.0%
TCTCTCTCAGATATGGTTTG+GGG - chr1.4:35915264-35915283 MS.gene41229:CDS 40.0%
TGAAACAGTGAATCACACTG+AGG - chr1.4:35914842-35914861 MS.gene41229:CDS 40.0%
TTGGGGACAAAACATTTGCA+TGG - chr1.4:35915394-35915413 MS.gene41229:CDS 40.0%
! AATCTGGAGTCCCATTCATT+AGG + chr1.4:35915998-35916017 None:intergenic 40.0%
! AGCAATGATGATGCTTTAGC+AGG - chr1.4:35914645-35914664 MS.gene41229:CDS 40.0%
! CCTTGAAAAGTGCAACTCAA+AGG - chr1.4:35914704-35914723 MS.gene41229:CDS 40.0%
! CGAGTTTTCTCTCTCAGATA+TGG - chr1.4:35915257-35915276 MS.gene41229:CDS 40.0%
! CTCCTTTTCTTGGAATGTTC+AGG + chr1.4:35916062-35916081 None:intergenic 40.0%
! CTTCACAAGTGCATGTTTTC+CGG + chr1.4:35915175-35915194 None:intergenic 40.0%
! CTTTAGCAGGTAGTTCTGTA+GGG - chr1.4:35914658-35914677 MS.gene41229:CDS 40.0%
! GTGATTTGTGGTGATTCTGT+TGG - chr1.4:35914402-35914421 MS.gene41229:CDS 40.0%
! TCTCCACAATTGAAGAGCAT+AGG - chr1.4:35915454-35915473 MS.gene41229:CDS 40.0%
! TTTAGCAGGTAGTTCTGTAG+GGG - chr1.4:35914659-35914678 MS.gene41229:CDS 40.0%
!! AAGTTGATAGAGTAAGCAGC+CGG - chr1.4:35917017-35917036 MS.gene41229:CDS 40.0%
!! TAAGCGTTTTGGACCACTTA+AGG - chr1.4:35916982-35917001 MS.gene41229:CDS 40.0%
!!! CCTTTGAGTTGCACTTTTCA+AGG + chr1.4:35914707-35914726 None:intergenic 40.0%
!!! CTGGTTGTTCGTCTTTTTTC+TGG + chr1.4:35916727-35916746 None:intergenic 40.0%
AAACATGCACTTGTGAAGCC+TGG - chr1.4:35915177-35915196 MS.gene41229:CDS 45.0%
AAACCCCCAATAGTTGGAAC+TGG - chr1.4:35916533-35916552 MS.gene41229:CDS 45.0%
AACAGTGAATCACACTGAGG+AGG - chr1.4:35914845-35914864 MS.gene41229:CDS 45.0%
AACCAGTGCAACAACCATCA+CGG - chr1.4:35916696-35916715 MS.gene41229:CDS 45.0%
AACCCCCAATAGTTGGAACT+GGG - chr1.4:35916534-35916553 MS.gene41229:CDS 45.0%
AATGCAGCGGAAGTTGAGTT+GGG - chr1.4:35914495-35914514 MS.gene41229:CDS 45.0%
ACAACCCTAGATTCCTCAAC+CGG + chr1.4:35914450-35914469 None:intergenic 45.0%
ACCCATGATGTGCAAATTGC+TGG - chr1.4:35914336-35914355 MS.gene41229:CDS 45.0%
ACTGACAGGGTCATTGACAA+TGG - chr1.4:35916602-35916621 MS.gene41229:intron 45.0%
AGATGGGTCTGTGATATGTG+GGG - chr1.4:35914368-35914387 MS.gene41229:CDS 45.0%
AGATTCCTCAACCGGATACT+CGG + chr1.4:35914442-35914461 None:intergenic 45.0%
AGGAAGAAACCCCCAATAGT+TGG - chr1.4:35916527-35916546 MS.gene41229:CDS 45.0%
AGTATCCGGTTGAGGAATCT+AGG - chr1.4:35914442-35914461 MS.gene41229:CDS 45.0%
AGTCAGACAGTAGAGAACAC+CGG - chr1.4:35915594-35915613 MS.gene41229:CDS 45.0%
ATAGCTGACAACGATGTGAG+CGG - chr1.4:35914735-35914754 MS.gene41229:CDS 45.0%
ATTCTGTTGGGGTAGTTGGT+GGG - chr1.4:35914415-35914434 MS.gene41229:CDS 45.0%
ATTGCTGGTGAAACCCTAGA+TGG - chr1.4:35914351-35914370 MS.gene41229:CDS 45.0%
CACATATCACAGACCCATCT+AGG + chr1.4:35914368-35914387 None:intergenic 45.0%
CACCAGCAATTTGCACATCA+TGG + chr1.4:35914341-35914360 None:intergenic 45.0%
CACTGTGCATCCATCAAAGA+AGG - chr1.4:35915956-35915975 MS.gene41229:CDS 45.0%
CCTGATCATCCTCATCAGTT+GGG + chr1.4:35916322-35916341 None:intergenic 45.0%
CTAGATGGGTCTGTGATATG+TGG - chr1.4:35914366-35914385 MS.gene41229:CDS 45.0%
GACACTCAAGTTACTGACCA+AGG - chr1.4:35915036-35915055 MS.gene41229:CDS 45.0%
GATGACTCCGAAATGCAAGA+TGG - chr1.4:35916107-35916126 MS.gene41229:CDS 45.0%
GCTATCTTCACTTCAGCTTG+TGG - chr1.4:35916373-35916392 MS.gene41229:CDS 45.0%
GTATCCGGTTGAGGAATCTA+GGG - chr1.4:35914443-35914462 MS.gene41229:CDS 45.0%
GTCTCAAGACGAGTCGAATA+TGG - chr1.4:35915525-35915544 MS.gene41229:CDS 45.0%
GTGACCCAGTTCCAACTATT+GGG + chr1.4:35916541-35916560 None:intergenic 45.0%
GTGAGAGATGAAGCAGTAGT+TGG - chr1.4:35914540-35914559 MS.gene41229:CDS 45.0%
TATCTTGTGATCTGCAGCCT+CGG + chr1.4:35914616-35914635 None:intergenic 45.0%
TCAAAGTCTCCATCTGCCTT+TGG + chr1.4:35916266-35916285 None:intergenic 45.0%
TCACTGCGTCACCTTCTATA+AGG - chr1.4:35916219-35916238 MS.gene41229:CDS 45.0%
TCCTGATCATCCTCATCAGT+TGG + chr1.4:35916323-35916342 None:intergenic 45.0%
TCTTAAAGACCACTCTTGCC+CGG + chr1.4:35917039-35917058 None:intergenic 45.0%
TGACCCAGTTCCAACTATTG+GGG + chr1.4:35916540-35916559 None:intergenic 45.0%
TGCAACACAAGACCAGGAAA+TGG - chr1.4:35917180-35917199 MS.gene41229:CDS 45.0%
TGTTGATGCAACACAAGACC+AGG - chr1.4:35917174-35917193 MS.gene41229:CDS 45.0%
TTCTAGTGACCGATCTCCAA+AGG - chr1.4:35916247-35916266 MS.gene41229:CDS 45.0%
TTCTGTTGTTGCAGGTTCGT+CGG - chr1.4:35914963-35914982 MS.gene41229:CDS 45.0%
TTGCTGGTGAAACCCTAGAT+GGG - chr1.4:35914352-35914371 MS.gene41229:CDS 45.0%
! GCTTGTAGTTCTGTTGTTGC+AGG - chr1.4:35914955-35914974 MS.gene41229:CDS 45.0%
! GCTTTAGCAGGTAGTTCTGT+AGG - chr1.4:35914657-35914676 MS.gene41229:CDS 45.0%
! GTCAACAAGGTGTCAAATGG+TGG - chr1.4:35915093-35915112 MS.gene41229:CDS 45.0%
! TTTGGAGCTTGTGACTGCTA+AGG - chr1.4:35915743-35915762 MS.gene41229:CDS 45.0%
! TTTGGTGACTTAGCAGAGAC+TGG + chr1.4:35916746-35916765 None:intergenic 45.0%
! TTTTCCTTTCCATCGCGCAA+CGG + chr1.4:35915072-35915091 None:intergenic 45.0%
!! AGTTGATAGAGTAAGCAGCC+GGG - chr1.4:35917018-35917037 MS.gene41229:CDS 45.0%
!! ATTCTCCTGATGGTGATGGT+CGG - chr1.4:35916015-35916034 MS.gene41229:CDS 45.0%
!! GAAGCTTTGAACAGTGCACT+TGG + chr1.4:35917151-35917170 None:intergenic 45.0%
!! GAGTTGGGTAGCGTTGTTTT+GGG - chr1.4:35914510-35914529 MS.gene41229:CDS 45.0%
!! TGAGTTGGGTAGCGTTGTTT+TGG - chr1.4:35914509-35914528 MS.gene41229:CDS 45.0%
!!! TGCACTGGTTTTTGTTGCAC+TGG + chr1.4:35916686-35916705 None:intergenic 45.0%
AAACGATCAAAGCCAGCCGT+AGG + chr1.4:35915726-35915745 None:intergenic 50.0%
AAAGCCAGCCGTAGGAAACT+CGG + chr1.4:35915718-35915737 None:intergenic 50.0%
AAGTGAGAAGTCACCCATGG+TGG - chr1.4:35915289-35915308 MS.gene41229:CDS 50.0%
ATCCGTCAGATGCATCTGAG+AGG - chr1.4:35915328-35915347 MS.gene41229:CDS 50.0%
ATTTCGGAGTCATCGGCGTA+GGG + chr1.4:35916101-35916120 None:intergenic 50.0%
CCATCACCATCAGGAGAATC+TGG + chr1.4:35916014-35916033 None:intergenic 50.0%
CCCAACTGATGAGGATGATC+AGG - chr1.4:35916319-35916338 MS.gene41229:CDS 50.0%
CGACACGTATTGGACTGACA+GGG - chr1.4:35916589-35916608 MS.gene41229:intron 50.0%
CTGTAGTTGTGGCTGCTGAT+TGG - chr1.4:35916468-35916487 MS.gene41229:CDS 50.0%
GAATGCAGCGGAAGTTGAGT+TGG - chr1.4:35914494-35914513 MS.gene41229:CDS 50.0%
GACCCAGTTCCAACTATTGG+GGG + chr1.4:35916539-35916558 None:intergenic 50.0%
GACGGATCAAATATCTGCCC+AGG + chr1.4:35915315-35915334 None:intergenic 50.0%
GATGGGTCTGTGATATGTGG+GGG - chr1.4:35914369-35914388 MS.gene41229:CDS 50.0%
GATTCTGTTGGGGTAGTTGG+TGG - chr1.4:35914414-35914433 MS.gene41229:CDS 50.0%
GCAAAGTGAGAAGTCACCCA+TGG - chr1.4:35915286-35915305 MS.gene41229:CDS 50.0%
GGTGACCCAGTTCCAACTAT+TGG + chr1.4:35916542-35916561 None:intergenic 50.0%
GGTGATTCTGTTGGGGTAGT+TGG - chr1.4:35914411-35914430 MS.gene41229:CDS 50.0%
GTCAGACAGTAGAGAACACC+GGG - chr1.4:35915595-35915614 MS.gene41229:CDS 50.0%
TCAGACAGTAGAGAACACCG+GGG - chr1.4:35915596-35915615 MS.gene41229:CDS 50.0%
TCCGTCAGATGCATCTGAGA+GGG - chr1.4:35915329-35915348 MS.gene41229:CDS 50.0%
TGGTCGGACTCCAGATAATC+TGG - chr1.4:35916031-35916050 MS.gene41229:CDS 50.0%
TGTGTCTCTCCCAACTGATG+AGG - chr1.4:35916310-35916329 MS.gene41229:CDS 50.0%
TTCCGTGATGGTTGTTGCAC+TGG + chr1.4:35916701-35916720 None:intergenic 50.0%
TTGCACATCATGGGTCACAG+TGG + chr1.4:35914331-35914350 None:intergenic 50.0%
! AGCGCTCTTGCTCCTTTTCT+TGG + chr1.4:35916072-35916091 None:intergenic 50.0%
! CAAGGTGTCAAATGGTGGTC+AGG - chr1.4:35915098-35915117 MS.gene41229:CDS 50.0%
! CCAGATTCTCCTGATGGTGA+TGG - chr1.4:35916011-35916030 MS.gene41229:CDS 50.0%
! CTCCATCTGCCTTTGGAGAT+CGG + chr1.4:35916259-35916278 None:intergenic 50.0%
! GGCTTACGATTAACTTGGGC+TGG + chr1.4:35916812-35916831 None:intergenic 50.0%
! GGCTTTGGTGACTTAACAGC+TGG + chr1.4:35916770-35916789 None:intergenic 50.0%
! GGTGACTTAACAGCTGGCTT+TGG + chr1.4:35916764-35916783 None:intergenic 50.0%
! GTCGGTGTCTATTGAGACTG+AGG - chr1.4:35914981-35915000 MS.gene41229:CDS 50.0%
! TGTGAGCGGTGTTTCTGCTT+TGG - chr1.4:35914749-35914768 MS.gene41229:CDS 50.0%
! TTCTGAAAGCAATCCTGCCG+AGG - chr1.4:35916850-35916869 MS.gene41229:CDS 50.0%
!! ACATTGTGGAGGTGTTGACC+CGG - chr1.4:35915821-35915840 MS.gene41229:CDS 50.0%
!! CGATTAACTTGGGCTGGCTT+TGG + chr1.4:35916806-35916825 None:intergenic 50.0%
!! TACGGCTGGCTTTGATCGTT+TGG - chr1.4:35915725-35915744 MS.gene41229:CDS 50.0%
!! TGCACTGGTTTCTGTTGCAC+TGG + chr1.4:35916656-35916675 None:intergenic 50.0%
!!! TGGGTAGCGTTGTTTTGGGA+GGG - chr1.4:35914514-35914533 MS.gene41229:CDS 50.0%
!!! TTGGGTAGCGTTGTTTTGGG+AGG - chr1.4:35914513-35914532 MS.gene41229:CDS 50.0%
AATATCTGCCCAGGCCACCA+TGG + chr1.4:35915306-35915325 None:intergenic 55.0%
ATATCTGCCCAGGCCACCAT+GGG + chr1.4:35915305-35915324 None:intergenic 55.0%
CATTTCGGAGTCATCGGCGT+AGG + chr1.4:35916102-35916121 None:intergenic 55.0%
CTATCCGAGTTTCCTACGGC+TGG - chr1.4:35915711-35915730 MS.gene41229:CDS 55.0%
CTTGTGGCACAAGAACCCCT+TGG - chr1.4:35916389-35916408 MS.gene41229:CDS 55.0%
GACCGATCTCCAAAGGCAGA+TGG - chr1.4:35916254-35916273 MS.gene41229:CDS 55.0%
GCCCTCTCAGATGCATCTGA+CGG + chr1.4:35915333-35915352 None:intergenic 55.0%
GCGACACGTATTGGACTGAC+AGG - chr1.4:35916588-35916607 MS.gene41229:intron 55.0%
GGGACTCCAGATTCTCCTGA+TGG - chr1.4:35916005-35916024 MS.gene41229:CDS 55.0%
TTCCGCTGCATTCTCACTCC+CGG + chr1.4:35914487-35914506 None:intergenic 55.0%
! GGCTTTGGTGACTTGGAAGC+TGG + chr1.4:35916791-35916810 None:intergenic 55.0%
! GGTGACTTGGAAGCTGGCTT+TGG + chr1.4:35916785-35916804 None:intergenic 55.0%
!! AGTTGGTGGGACCGAGTATC+CGG - chr1.4:35914428-35914447 MS.gene41229:CDS 55.0%
!! CAATATGGTGGATGCTGCCG+AGG - chr1.4:35914596-35914615 MS.gene41229:CDS 55.0%
!! TGCACTGGTTTCTGTTGCGC+TGG + chr1.4:35916641-35916660 None:intergenic 55.0%
!! TTGGGCTGGCTTTGGTGACT+TGG + chr1.4:35916798-35916817 None:intergenic 55.0%
!!! AGGAGGTTTTTCGGGAGCCT+CGG + chr1.4:35916870-35916889 None:intergenic 55.0%
!!! GGGTAGCGTTGTTTTGGGAG+GGG - chr1.4:35914515-35914534 MS.gene41229:CDS 55.0%
AGAAGTCACCCATGGTGGCC+TGG - chr1.4:35915294-35915313 MS.gene41229:CDS 60.0%
AGCCGGGAGTGAGAATGCAG+CGG - chr1.4:35914482-35914501 MS.gene41229:CDS 60.0%
AGTAAGCAGCCGGGCAAGAG+TGG - chr1.4:35917027-35917046 MS.gene41229:CDS 60.0%
GAAGTCACCCATGGTGGCCT+GGG - chr1.4:35915295-35915314 MS.gene41229:CDS 60.0%
GAGGCTCCCGAAAAACCTCC+TGG - chr1.4:35916869-35916888 MS.gene41229:CDS 60.0%
GGAGTCCGACCATCACCATC+AGG + chr1.4:35916023-35916042 None:intergenic 60.0%
TGCACCGTTGCGCGATGGAA+AGG - chr1.4:35915065-35915084 MS.gene41229:CDS 60.0%
TGGGACCGAGTATCCGGTTG+AGG - chr1.4:35914434-35914453 MS.gene41229:CDS 60.0%
TTCCATCGCGCAACGGTGCA+TGG + chr1.4:35915065-35915084 None:intergenic 60.0%
AGCCATGCACCGTTGCGCGA+TGG - chr1.4:35915060-35915079 MS.gene41229:CDS 65.0%
GCAACGGTGCATGGCTCCCT+TGG + chr1.4:35915056-35915075 None:intergenic 65.0%
!!! GGTTTTTCGGGAGCCTCGGC+AGG + chr1.4:35916866-35916885 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 35914300 35917240 35914300 ID=MS.gene41229
chr1.4 mRNA 35914300 35917240 35914300 ID=MS.gene41229.t1;Parent=MS.gene41229
chr1.4 exon 35916667 35917240 35916667 ID=MS.gene41229.t1.exon1;Parent=MS.gene41229.t1
chr1.4 CDS 35916667 35917240 35916667 ID=cds.MS.gene41229.t1;Parent=MS.gene41229.t1
chr1.4 exon 35914300 35916563 35914300 ID=MS.gene41229.t1.exon2;Parent=MS.gene41229.t1
chr1.4 CDS 35914300 35916563 35914300 ID=cds.MS.gene41229.t1;Parent=MS.gene41229.t1
Gene Sequence

>MS.gene41229

ATGGAGGAACCAGAAAATGTTTCAGAAACCACTGTGACCCATGATGTGCAAATTGCTGGTGAAACCCTAGATGGGTCTGTGATATGTGGGGGTCATAATGAAGTGATTTGTGGTGATTCTGTTGGGGTAGTTGGTGGGACCGAGTATCCGGTTGAGGAATCTAGGGTTGTAGAATTTGAAGAAGCCGGGAGTGAGAATGCAGCGGAAGTTGAGTTGGGTAGCGTTGTTTTGGGAGGGGAAGTGAGAGATGAAGCAGTAGTTGGTAGTACAGTTGTCGAAACAACAATTGGTGACTTCAATATGGTGGATGCTGCCGAGGCTGCAGATCACAAGATAATAAATACTAGCAATGATGATGCTTTAGCAGGTAGTTCTGTAGGGGAAGAAAATGTACAGTGCTTGAGCCTTGAAAAGTGCAACTCAAAGGAGCAATTCATAGCTGACAACGATGTGAGCGGTGTTTCTGCTTTGGATGCTCAACAATCTGATGTACATGAGGGGATGCAAATAGATAGTGAAGATCAACAAGGGACAGAAAGAAATGAAACAGTGAATCACACTGAGGAGGTTAAAGGTAAGAAGATATCTGTTTTTTCCAGTTTAACTACTGGTAATCGTGGTATATGAGAATGTTGTTTAGTTTTTAGATAGTGATGCTTGTAGTTCTGTTGTTGCAGGTTCGTCGGTGTCTATTGAGACTGAGGAAAACTTGGATGCTAATGCAATTGTAGAAGAAGACACTCAAGTTACTGACCAAGGGAGCCATGCACCGTTGCGCGATGGAAAGGAAAAAGTCAACAAGGTGTCAAATGGTGGTCAGGAAATTGAAAAAGTTAATGAAGTTGGGAAGAGAAAACTAAGAGATAGAAAAGCCGGAAAACATGCACTTGTGAAGCCTGGTAGTTCAGAAATAGTTCATCAGGCACGATATTTGCTGCCAAAAGAAAAAGAAGAAGGCGAGTTTTCTCTCTCAGATATGGTTTGGGGCAAAGTGAGAAGTCACCCATGGTGGCCTGGGCAGATATTTGATCCGTCAGATGCATCTGAGAGGGCAAAGAAGCATTATAAAAAAGATTGCTATTTCGTCGCATATTTTGGGGACAAAACATTTGCATGGAATGAAGCATCTAAGCTAAAGCATTTTAGGGCACATTTCTCCACAATTGAAGAGCATAGGAATCGTTCAGAATCATTCCAGAGTGCTATTAATTGTGCTTTGGATGAAGTCTCAAGACGAGTCGAATATGGGCTTGCATGTTCTTGTATACCTAAAGACACCTATGACATGATTAAAAGTCAGACAGTAGAGAACACCGGGGTTCAACAAGAAATAAGTATCACACATGAGGTGGATGAGTCTCTAAATGCTGACTCATTTTCACCTTTGAATCTTATAGAATATGTGAAAACACTATCCGAGTTTCCTACGGCTGGCTTTGATCGTTTGGAGCTTGTGACTGCTAAGGCTCAGCTGCTTGCTTTTAATCGTTTTAAGGGTTTCTCTTGCTTGCCAGAAATACAACATTGTGGAGGTGTTGACCCGGACCATTCATTTTTTGTTGACGATGAACAAGATTTGTGTGAAGATACTGAGAATGCAACTCCTGTAGTTAAAAAAGGCAGCAACCGTCAAAAGCGTAAATATAAGTTCAAGGACACTGTGCATCCATCAAAGAAGGAAAAAAGGATGTCAGACCTAATGAATGGGACTCCAGATTCTCCTGATGGTGATGGTCGGACTCCAGATAATCTGGTTTCACCTGAACATTCCAAGAAAAGGAGCAAGAGCGCTATTGATCCCTACGCCGATGACTCCGAAATGCAAGATGGGAGAAAAACAATTTCTGTTGCAAAAGTTTCAAATACCACAAAGTCATCGTTTAAAATCGGTGATTGTATTCGTCGGGCTGCTAGTCAACTCACTGCGTCACCTTCTATAAGGAAGTGTTCTAGTGACCGATCTCCAAAGGCAGATGGAGACTTTGATGTTTTTCCTGATAATGAATCAGATGTGTCTCTCCCAACTGATGAGGATGATCAGGATTCGACAGAATATTCGTCTCTAGATGATTTGCTATCTTCACTTCAGCTTGTGGCACAAGAACCCCTTGGAGAGTATACTTTTCTGAATGGCAGCATAGTCAGCTTTTTCTCTGATTTCAGAAATTCTGTAGTTGTGGCTGCTGATTGGAAAGAGATTTTACGCACGGATATATTTGGTATTAAGAGGAAGAAACCCCCAATAGTTGGAACTGGGTCACCTGAAACATTTGAATTTGAAGATATGAGCGACACGTATTGGACTGACAGGGTCATTGACAATGGCACTGAAGAGAAACCAGCGCAACAGAAACCAGTGCAACAGAAACCAGTGCAACAGAAACCAGTGCAACAAAAACCAGTGCAACAACCATCACGGAAAAACCAGAAAAAAGACGAACAACCAGTCTCTGCTAAGTCACCAAAGCCAGCTGTTAAGTCACCAAAGCCAGCTTCCAAGTCACCAAAGCCAGCCCAAGTTAATCGTAAGCCCTATACCAAGAAAAACAATTCTGAAAGCAATCCTGCCGAGGCTCCCGAAAAACCTCCTGGTTATATAGATGACAATGCTCCTGCTGAGCTTGTTATGAACTTTGCCGAGCTCAATTCTGTTCCCTTAGAAGCAAACCTTAACAAAATGTTTAAGCGTTTTGGACCACTTAAGGAATCTGAAACAGAAGTTGATAGAGTAAGCAGCCGGGCAAGAGTGGTCTTTAAGAAATGTGTAGATGCAGAGGTAGCTTTCAATAGTGCTAAGAAGTTCAACATATTTGGATCAGTACTCGTAAATTACCAGCTTAATTACACTCCAAGTGCACTGTTCAAAGCTTCATCTGTTGATGCAACACAAGACCAGGAAATGGTTTTCGATCTCTCCAATTTTGAAGTTAATATGGTCTAG
Protein sequence

>MS.gene41229.t1

MEEPENVSETTVTHDVQIAGETLDGSVICGGHNEVICGDSVGVVGGTEYPVEESRVVEFEEAGSENAAEVELGSVVLGGEVRDEAVVGSTVVETTIGDFNMVDAAEAADHKIINTSNDDALAGSSVGEENVQCLSLEKCNSKEQFIADNDVSGVSALDAQQSDVHEGMQIDSEDQQGTERNETVNHTEEVKGSSVSIETEENLDANAIVEEDTQVTDQGSHAPLRDGKEKVNKVSNGGQEIEKVNEVGKRKLRDRKAGKHALVKPGSSEIVHQARYLLPKEKEEGEFSLSDMVWGKVRSHPWWPGQIFDPSDASERAKKHYKKDCYFVAYFGDKTFAWNEASKLKHFRAHFSTIEEHRNRSESFQSAINCALDEVSRRVEYGLACSCIPKDTYDMIKSQTVENTGVQQEISITHEVDESLNADSFSPLNLIEYVKTLSEFPTAGFDRLELVTAKAQLLAFNRFKGFSCLPEIQHCGGVDPDHSFFVDDEQDLCEDTENATPVVKKGSNRQKRKYKFKDTVHPSKKEKRMSDLMNGTPDSPDGDGRTPDNLVSPEHSKKRSKSAIDPYADDSEMQDGRKTISVAKVSNTTKSSFKIGDCIRRAASQLTASPSIRKCSSDRSPKADGDFDVFPDNESDVSLPTDEDDQDSTEYSSLDDLLSSLQLVAQEPLGEYTFLNGSIVSFFSDFRNSVVVAADWKEILRTDIFGIKRKKPPIVGTGSPETFEFEDMSDTYWTDRVIDNGTEEKPAQQKPVQQKPVQQKPVQQKPVQQPSRKNQKKDEQPVSAKSPKPAVKSPKPASKSPKPAQVNRKPYTKKNNSESNPAEAPEKPPGYIDDNAPAELVMNFAELNSVPLEANLNKMFKRFGPLKESETEVDRVSSRARVVFKKCVDAEVAFNSAKKFNIFGSVLVNYQLNYTPSALFKASSVDATQDQEMVFDLSNFEVNMV