Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41250.t1 | XP_013450334.1 | 96.6 | 326 | 11 | 0 | 1 | 326 | 1 | 326 | 2.80E-181 | 644.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41250.t1 | Q9FVQ0 | 47.3 | 319 | 168 | 0 | 8 | 326 | 5 | 323 | 1.8e-88 | 327.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41250.t1 | A0A072U3V7 | 96.6 | 326 | 11 | 0 | 1 | 326 | 1 | 326 | 2.0e-181 | 644.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049853 | MS.gene41250 | 0.802739 | 4.86E-49 | -1.69E-46 |
| MS.gene051710 | MS.gene41250 | 0.822438 | 2.37E-53 | -1.69E-46 |
| MS.gene058294 | MS.gene41250 | 0.806054 | 9.91E-50 | -1.69E-46 |
| MS.gene058515 | MS.gene41250 | 0.816359 | 5.76E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41250.t1 | MTR_7g107690 | 96.626 | 326 | 11 | 0 | 1 | 326 | 1 | 326 | 0.0 | 651 |
| MS.gene41250.t1 | MTR_7g107710 | 67.500 | 320 | 103 | 1 | 8 | 326 | 6 | 325 | 4.25e-162 | 457 |
| MS.gene41250.t1 | MTR_8g432640 | 48.589 | 319 | 164 | 0 | 8 | 326 | 6 | 324 | 8.91e-115 | 337 |
| MS.gene41250.t1 | MTR_3g088925 | 50.157 | 319 | 159 | 0 | 8 | 326 | 7 | 325 | 9.20e-114 | 335 |
| MS.gene41250.t1 | MTR_3g088945 | 49.843 | 319 | 160 | 0 | 8 | 326 | 7 | 325 | 1.43e-112 | 332 |
| MS.gene41250.t1 | MTR_5g033260 | 48.903 | 319 | 163 | 0 | 8 | 326 | 6 | 324 | 1.75e-112 | 331 |
| MS.gene41250.t1 | MTR_3g088955 | 49.216 | 319 | 162 | 0 | 8 | 326 | 7 | 325 | 7.33e-111 | 328 |
| MS.gene41250.t1 | MTR_4g051642 | 48.903 | 319 | 163 | 0 | 8 | 326 | 7 | 325 | 2.23e-109 | 324 |
| MS.gene41250.t1 | MTR_1g069275 | 45.988 | 324 | 166 | 4 | 9 | 326 | 26 | 346 | 4.16e-102 | 306 |
| MS.gene41250.t1 | MTR_3g109520 | 46.130 | 323 | 168 | 2 | 9 | 326 | 40 | 361 | 1.81e-101 | 305 |
| MS.gene41250.t1 | MTR_6g086870 | 45.399 | 326 | 169 | 4 | 9 | 326 | 21 | 345 | 7.08e-100 | 300 |
| MS.gene41250.t1 | MTR_1g008380 | 46.440 | 323 | 166 | 3 | 9 | 326 | 43 | 363 | 1.46e-99 | 300 |
| MS.gene41250.t1 | MTR_7g099330 | 43.653 | 323 | 171 | 3 | 9 | 326 | 25 | 341 | 7.18e-99 | 298 |
| MS.gene41250.t1 | MTR_1g046230 | 44.923 | 325 | 171 | 3 | 9 | 326 | 25 | 348 | 1.46e-98 | 297 |
| MS.gene41250.t1 | MTR_1g011630 | 43.034 | 323 | 174 | 3 | 9 | 326 | 17 | 334 | 4.68e-95 | 288 |
| MS.gene41250.t1 | MTR_7g099160 | 40.000 | 255 | 142 | 3 | 77 | 326 | 214 | 462 | 1.10e-61 | 205 |
| MS.gene41250.t1 | MTR_3g096030 | 40.331 | 181 | 84 | 1 | 4 | 184 | 2 | 158 | 1.81e-45 | 152 |
| MS.gene41250.t1 | MTR_1g041605 | 85.000 | 40 | 6 | 0 | 112 | 151 | 29 | 68 | 2.85e-17 | 75.5 |
| MS.gene41250.t1 | MTR_8g037910 | 25.532 | 235 | 141 | 5 | 7 | 214 | 3 | 230 | 2.21e-15 | 75.5 |
| MS.gene41250.t1 | MTR_8g037910 | 25.532 | 235 | 141 | 5 | 7 | 214 | 3 | 230 | 2.79e-15 | 75.9 |
| MS.gene41250.t1 | MTR_8g037910 | 25.532 | 235 | 141 | 5 | 7 | 214 | 3 | 230 | 6.44e-15 | 75.5 |
| MS.gene41250.t1 | MTR_8g037880 | 24.268 | 239 | 148 | 6 | 7 | 217 | 3 | 236 | 1.35e-14 | 74.3 |
| MS.gene41250.t1 | MTR_3g437580 | 25.101 | 247 | 138 | 6 | 4 | 214 | 9 | 244 | 6.62e-14 | 72.0 |
| MS.gene41250.t1 | MTR_3g437580 | 25.101 | 247 | 138 | 6 | 4 | 214 | 9 | 244 | 1.22e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41250.t1 | AT1G48910 | 47.335 | 319 | 168 | 0 | 8 | 326 | 5 | 323 | 1.92e-115 | 339 |
| MS.gene41250.t1 | AT1G21430 | 44.817 | 328 | 176 | 4 | 1 | 326 | 1 | 325 | 1.18e-101 | 304 |
| MS.gene41250.t1 | AT1G04610 | 46.012 | 326 | 167 | 4 | 9 | 326 | 38 | 362 | 3.61e-101 | 304 |
| MS.gene41250.t1 | AT4G28720 | 44.308 | 325 | 173 | 4 | 9 | 326 | 26 | 349 | 7.17e-101 | 303 |
| MS.gene41250.t1 | AT5G25620 | 46.462 | 325 | 164 | 4 | 9 | 326 | 33 | 354 | 3.16e-100 | 301 |
| MS.gene41250.t1 | AT5G25620 | 46.462 | 325 | 164 | 4 | 9 | 326 | 33 | 354 | 7.09e-100 | 301 |
| MS.gene41250.t1 | AT4G13260 | 44.272 | 323 | 174 | 2 | 9 | 326 | 29 | 350 | 7.81e-100 | 300 |
| MS.gene41250.t1 | AT1G04180 | 44.753 | 324 | 170 | 4 | 9 | 326 | 26 | 346 | 2.90e-97 | 294 |
| MS.gene41250.t1 | AT5G11320 | 44.582 | 323 | 167 | 3 | 9 | 326 | 18 | 333 | 1.15e-96 | 290 |
| MS.gene41250.t1 | AT5G43890 | 43.385 | 325 | 176 | 4 | 9 | 326 | 26 | 349 | 2.99e-96 | 291 |
| MS.gene41250.t1 | AT5G11320 | 44.582 | 323 | 167 | 3 | 9 | 326 | 18 | 333 | 9.64e-96 | 290 |
| MS.gene41250.t1 | AT4G32540 | 42.901 | 324 | 173 | 4 | 9 | 326 | 22 | 339 | 4.20e-94 | 286 |
| MS.gene41250.t1 | AT4G32540 | 43.385 | 325 | 172 | 4 | 9 | 326 | 22 | 341 | 6.51e-94 | 285 |
| MS.gene41250.t1 | AT4G13260 | 46.099 | 282 | 147 | 1 | 9 | 285 | 29 | 310 | 2.45e-93 | 280 |
| MS.gene41250.t1 | AT2G33230 | 43.865 | 326 | 174 | 4 | 9 | 326 | 33 | 357 | 8.67e-93 | 283 |
| MS.gene41250.t1 | AT4G13260 | 39.592 | 245 | 141 | 3 | 87 | 326 | 5 | 247 | 4.68e-59 | 192 |
| MS.gene41250.t1 | AT1G65860 | 27.119 | 236 | 136 | 4 | 5 | 213 | 10 | 236 | 5.46e-16 | 79.0 |
| MS.gene41250.t1 | AT1G62560 | 27.197 | 239 | 133 | 7 | 5 | 213 | 10 | 237 | 6.64e-16 | 78.2 |
| MS.gene41250.t1 | AT1G62560 | 27.542 | 236 | 130 | 7 | 8 | 213 | 13 | 237 | 7.20e-16 | 78.6 |
| MS.gene41250.t1 | AT1G12140 | 30.233 | 172 | 103 | 4 | 49 | 212 | 74 | 236 | 1.23e-13 | 71.6 |
| MS.gene41250.t1 | AT1G12140 | 30.233 | 172 | 103 | 4 | 49 | 212 | 74 | 236 | 1.23e-13 | 71.6 |
| MS.gene41250.t1 | AT5G07800 | 27.413 | 259 | 139 | 8 | 5 | 226 | 13 | 259 | 3.69e-13 | 70.5 |
| MS.gene41250.t1 | AT1G12160 | 24.198 | 343 | 155 | 11 | 8 | 317 | 12 | 282 | 5.71e-13 | 69.7 |
| MS.gene41250.t1 | AT5G61290 | 26.971 | 241 | 136 | 6 | 1 | 205 | 9 | 245 | 3.83e-12 | 67.4 |
| MS.gene41250.t1 | AT1G62540 | 27.848 | 237 | 133 | 5 | 5 | 213 | 10 | 236 | 8.19e-12 | 66.2 |
| MS.gene41250.t1 | AT1G62540 | 27.848 | 237 | 133 | 5 | 5 | 213 | 10 | 236 | 8.80e-12 | 66.2 |
| MS.gene41250.t1 | AT1G62540 | 27.848 | 237 | 133 | 5 | 5 | 213 | 10 | 236 | 9.69e-12 | 66.2 |
| MS.gene41250.t1 | AT1G12200 | 32.857 | 140 | 78 | 5 | 80 | 213 | 113 | 242 | 6.09e-11 | 63.2 |
| MS.gene41250.t1 | AT1G12140 | 29.480 | 173 | 103 | 5 | 49 | 213 | 74 | 235 | 6.21e-11 | 63.5 |
| MS.gene41250.t1 | AT1G12200 | 33.333 | 138 | 76 | 5 | 82 | 213 | 115 | 242 | 7.01e-11 | 63.5 |
Find 71 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCAAGGGGTATGCTGAATT+TGG | 0.142332 | 1.4:+35335355 | MS.gene41250:CDS |
| CTCTTCAACCCTTCAATTTC+AGG | 0.149369 | 1.4:-35334473 | None:intergenic |
| TACGGGGATGTCACGAATTA+TGG | 0.154022 | 1.4:+35335449 | MS.gene41250:CDS |
| GTTGTTGGGTCTGGGAATTC+TGG | 0.176673 | 1.4:+35334566 | MS.gene41250:CDS |
| GTACTTGACCTTCATATAAA+AGG | 0.212639 | 1.4:-35335495 | None:intergenic |
| CATGTTCTTGTTGTTGGGTC+TGG | 0.238263 | 1.4:+35334557 | MS.gene41250:CDS |
| TCAAGGGGTATGCTGAATTT+GGG | 0.240991 | 1.4:+35335356 | MS.gene41250:CDS |
| GTTGTTGGAGCAGGCCCTTC+TGG | 0.254075 | 1.4:+35334062 | MS.gene41250:CDS |
| GATGGTGATGCTTAGTAAAA+TGG | 0.306091 | 1.4:+35335424 | MS.gene41250:CDS |
| AATTAAGTCTCGAGAGTTAA+AGG | 0.307124 | 1.4:+35335556 | MS.gene41250:CDS |
| TCTCTTTCGAGGATTATATA+AGG | 0.314818 | 1.4:-35334122 | None:intergenic |
| ATGCTTAGTAAAATGGTTTA+CGG | 0.339605 | 1.4:+35335431 | MS.gene41250:CDS |
| GAAGGTGAAGGCTAAGAATA+AGG | 0.345400 | 1.4:+35334376 | MS.gene41250:CDS |
| AATGAAAGAGTGATAGTTGT+TGG | 0.360593 | 1.4:+35334047 | MS.gene41250:CDS |
| GATGATCATGTTCTTGTTGT+TGG | 0.365508 | 1.4:+35334551 | MS.gene41250:CDS |
| GGGAAAGTGATTCATTCAAC+TGG | 0.376100 | 1.4:+35334503 | MS.gene41250:CDS |
| ATGTTCTTGTTGTTGGGTCT+GGG | 0.378865 | 1.4:+35334558 | MS.gene41250:CDS |
| TGCTTAGTAAAATGGTTTAC+GGG | 0.386664 | 1.4:+35335432 | MS.gene41250:CDS |
| ATCAACCCACAAGTGGCTTA+AGG | 0.389315 | 1.4:+35336905 | MS.gene41250:CDS |
| AAGGCTAAGAATAAGGATTC+TGG | 0.392445 | 1.4:+35334383 | MS.gene41250:CDS |
| CATTCAACTGGGTTTAAGAA+TGG | 0.393718 | 1.4:+35334515 | MS.gene41250:CDS |
| ATGATGAAGGTTCTGAGAAA+TGG | 0.397382 | 1.4:+35334354 | MS.gene41250:CDS |
| CCTTCAATTTCAGGTACAAA+AGG | 0.400011 | 1.4:-35334464 | None:intergenic |
| ACGGGGATGTCACGAATTAT+GGG | 0.428718 | 1.4:+35335450 | MS.gene41250:CDS |
| ATTCAACTGGGTTTAAGAAT+GGG | 0.438492 | 1.4:+35334516 | MS.gene41250:CDS |
| TAAGGATTCTGGTGAGGTTG+AGG | 0.446777 | 1.4:+35334394 | MS.gene41250:CDS |
| CTTAAGCATTCTATTTCAGC+TGG | 0.447488 | 1.4:-35336807 | None:intergenic |
| TCAACTGTTCTGTGATAAAG+AGG | 0.449237 | 1.4:-35334320 | None:intergenic |
| ATGATCATGTTCTTGTTGTT+GGG | 0.450522 | 1.4:+35334552 | MS.gene41250:CDS |
| AAGGTTCCAACGTCAATAAT+AGG | 0.451735 | 1.4:-35335527 | None:intergenic |
| TTCGAGGATTATATAAGGAA+TGG | 0.455797 | 1.4:-35334117 | None:intergenic |
| TTCTGGCATGGAAATTGCAT+TGG | 0.469456 | 1.4:+35334583 | MS.gene41250:CDS |
| TACTTGACCTTCATATAAAA+GGG | 0.473078 | 1.4:-35335494 | None:intergenic |
| GTAAACCTTAAGCCACTTGT+GGG | 0.488383 | 1.4:-35336910 | None:intergenic |
| GGATTATATAAGGAATGGAT+TGG | 0.489614 | 1.4:-35334112 | None:intergenic |
| TTCAATCGTTGTTCGAAGCA+AGG | 0.504367 | 1.4:+35334631 | MS.gene41250:CDS |
| TCTGATGAAGTATTTGTCAA+TGG | 0.510851 | 1.4:+35335385 | MS.gene41250:CDS |
| CAAGGGGTATGCTGAATTTG+GGG | 0.511286 | 1.4:+35335357 | MS.gene41250:CDS |
| TGGGGTTGGTAGGCCTAGTG+AGG | 0.512474 | 1.4:+35335469 | MS.gene41250:CDS |
| GCTGAAATAGAATGCTTAAG+TGG | 0.513060 | 1.4:+35336810 | MS.gene41250:CDS |
| ATATAAAAGGGACCCTCACT+AGG | 0.526447 | 1.4:-35335482 | None:intergenic |
| CTTCAATTTCAGGTACAAAA+GGG | 0.526666 | 1.4:-35334463 | None:intergenic |
| TGTAAACCTTAAGCCACTTG+TGG | 0.531681 | 1.4:-35336911 | None:intergenic |
| GGAATGTATGATGGAAAAGA+AGG | 0.532095 | 1.4:-35334242 | None:intergenic |
| GGTGAGGTTGAGGAATATGA+AGG | 0.542585 | 1.4:+35334404 | MS.gene41250:CDS |
| AGGTTGAGGAATATGAAGGA+AGG | 0.551335 | 1.4:+35334408 | MS.gene41250:CDS |
| ATGTATGATGGAAAAGAAGG+TGG | 0.552215 | 1.4:-35334239 | None:intergenic |
| GATGGAAAAGAAGGTGGGAA+TGG | 0.556044 | 1.4:-35334233 | None:intergenic |
| AGAGTGATAGTTGTTGGAGC+AGG | 0.568437 | 1.4:+35334053 | MS.gene41250:CDS |
| TCACGAATTATGGGGTTGGT+AGG | 0.576228 | 1.4:+35335459 | MS.gene41250:CDS |
| GAGAATGCAGAGTATGATGA+AGG | 0.578252 | 1.4:+35334341 | MS.gene41250:CDS |
| GTATTTGTCAATGGAGATGG+TGG | 0.579490 | 1.4:+35335394 | MS.gene41250:CDS |
| TGGGTCTGGGAATTCTGGCA+TGG | 0.586713 | 1.4:+35334571 | MS.gene41250:CDS |
| CGGGGATGTCACGAATTATG+GGG | 0.588744 | 1.4:+35335451 | MS.gene41250:CDS |
| GGGGTTGGTAGGCCTAGTGA+GGG | 0.589928 | 1.4:+35335470 | MS.gene41250:CDS |
| GTGGGTTGATCTATTGAAGC+CGG | 0.593433 | 1.4:-35336892 | None:intergenic |
| GGAAAGTGATTCATTCAACT+GGG | 0.594965 | 1.4:+35334504 | MS.gene41250:CDS |
| TGTATGATGGAAAAGAAGGT+GGG | 0.596307 | 1.4:-35334238 | None:intergenic |
| GAAGTATTTGTCAATGGAGA+TGG | 0.597497 | 1.4:+35335391 | MS.gene41250:CDS |
| GCTGCTACTGAGAGACCAGA+AGG | 0.602816 | 1.4:-35334077 | None:intergenic |
| GAAGGTGGGAATGGTTTGTG+AGG | 0.606122 | 1.4:-35334224 | None:intergenic |
| GGAGATGGTGGATTTAGTGA+TGG | 0.618594 | 1.4:+35335406 | MS.gene41250:CDS |
| TTCTGAGAAATGGAAGGTGA+AGG | 0.623363 | 1.4:+35334364 | MS.gene41250:CDS |
| GATGTCACGAATTATGGGGT+TGG | 0.629113 | 1.4:+35335455 | MS.gene41250:CDS |
| TCAATAGATCAACCCACAAG+TGG | 0.631691 | 1.4:+35336898 | MS.gene41250:CDS |
| GCATTGGATCTTATCAACCA+TGG | 0.635858 | 1.4:+35334599 | MS.gene41250:CDS |
| AAGTATCCTATTATTGACGT+TGG | 0.642218 | 1.4:+35335521 | MS.gene41250:CDS |
| GCTTAGTAAAATGGTTTACG+GGG | 0.650434 | 1.4:+35335433 | MS.gene41250:CDS |
| CTGCTACTGAGAGACCAGAA+GGG | 0.656151 | 1.4:-35334076 | None:intergenic |
| TAAGAATAAGGATTCTGGTG+AGG | 0.661843 | 1.4:+35334388 | MS.gene41250:CDS |
| TGAAGGTTCTGAGAAATGGA+AGG | 0.688803 | 1.4:+35334358 | MS.gene41250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTATAGTATGTAT+TGG | - | chr1.4:35336038-35336057 | None:intergenic | 10.0% |
| !! | ATAAATAATATAATAAATGC+AGG | + | chr1.4:35335322-35335341 | MS.gene41250:intron | 10.0% |
| !! | TAGAATAAATATATAATTGA+CGG | + | chr1.4:35335161-35335180 | MS.gene41250:intron | 10.0% |
| !!! | AAAAAATCTGTTTTTTTTTA+AGG | + | chr1.4:35336185-35336204 | MS.gene41250:intron | 10.0% |
| !!! | ATTGGTTTTTTTTTTTTTTT+TGG | - | chr1.4:35336020-35336039 | None:intergenic | 10.0% |
| !!! | ATTTTTTAAATATAGTATGT+GGG | - | chr1.4:35336104-35336123 | None:intergenic | 10.0% |
| !!! | TATTTTTTAAATATAGTATG+TGG | - | chr1.4:35336105-35336124 | None:intergenic | 10.0% |
| !!! | TTGATTTTAATGATAATTTA+TGG | - | chr1.4:35335683-35335702 | None:intergenic | 10.0% |
| !!! | TTTTAAAATATAGTATGTAT+TGG | - | chr1.4:35336167-35336186 | None:intergenic | 10.0% |
| !! | AAAACAAAACAAAAAACATT+CGG | - | chr1.4:35334735-35334754 | None:intergenic | 15.0% |
| !! | AAAATAAAGGATTAAATTGA+TGG | + | chr1.4:35335756-35335775 | MS.gene41250:intron | 15.0% |
| !! | AAATACAATTGAATTAGTAA+TGG | - | chr1.4:35334993-35335012 | None:intergenic | 15.0% |
| !! | AACAAATTTATTTAAGTGAA+AGG | + | chr1.4:35336532-35336551 | MS.gene41250:intron | 15.0% |
| !! | AGAATAAATATATAATTGAC+GGG | + | chr1.4:35335162-35335181 | MS.gene41250:intron | 15.0% |
| !! | ATGTATTCAAGTATAATTTA+AGG | - | chr1.4:35335715-35335734 | None:intergenic | 15.0% |
| !!! | TATTGTAAAAACTTTTCTTT+AGG | - | chr1.4:35334266-35334285 | None:intergenic | 15.0% |
| !!! | TATTTGACTTTAATAGTTTA+AGG | + | chr1.4:35335803-35335822 | MS.gene41250:intron | 15.0% |
| !!! | TTTATTCTAAAAAAAGATTG+TGG | - | chr1.4:35335150-35335169 | None:intergenic | 15.0% |
| !!! | TTTTTTAAATATAGTATGTG+GGG | - | chr1.4:35336103-35336122 | None:intergenic | 15.0% |
| !! | AAAGAAACATATCAAACTAT+AGG | + | chr1.4:35334910-35334929 | MS.gene41250:intron | 20.0% |
| !! | ACCTAAAATAACATTTAGAT+GGG | + | chr1.4:35336494-35336513 | MS.gene41250:intron | 20.0% |
| !! | AGAATGACATATATTTCAAT+AGG | - | chr1.4:35336256-35336275 | None:intergenic | 20.0% |
| !! | ATTGAAATATATGTCATTCT+AGG | + | chr1.4:35336256-35336275 | MS.gene41250:intron | 20.0% |
| !! | TACCTAAAATAACATTTAGA+TGG | + | chr1.4:35336493-35336512 | MS.gene41250:intron | 20.0% |
| !! | TATACTTGAATACATCAATT+TGG | + | chr1.4:35335720-35335739 | MS.gene41250:intron | 20.0% |
| !! | TCCATAAACAAGTAAAATAA+AGG | + | chr1.4:35335743-35335762 | MS.gene41250:intron | 20.0% |
| !! | TGAAAAGTGAAATATAATTG+TGG | + | chr1.4:35336730-35336749 | MS.gene41250:intron | 20.0% |
| !! | TGATTATACTCAAATATTTC+TGG | + | chr1.4:35335012-35335031 | MS.gene41250:intron | 20.0% |
| !!! | AGATTTTATATAGAATTGGA+CGG | + | chr1.4:35335082-35335101 | MS.gene41250:intron | 20.0% |
| !!! | GGTAAGATTTTATATAGAAT+TGG | + | chr1.4:35335078-35335097 | MS.gene41250:intron | 20.0% |
| !!! | TCCTTTATTTTACTTGTTTA+TGG | - | chr1.4:35335747-35335766 | None:intergenic | 20.0% |
| !!! | TTCAGAAGATTTTTTTTTGA+GGG | - | chr1.4:35335954-35335973 | None:intergenic | 20.0% |
| !!! | TTTCAGAAGATTTTTTTTTG+AGG | - | chr1.4:35335955-35335974 | None:intergenic | 20.0% |
| !!! | TTTTTAAATATAGTATGTGG+GGG | - | chr1.4:35336102-35336121 | None:intergenic | 20.0% |
| ! | AGGTTATCTAACTATAAACA+AGG | + | chr1.4:35336552-35336571 | MS.gene41250:intron | 25.0% |
| ! | ATGCTTAGTAAAATGGTTTA+CGG | + | chr1.4:35335431-35335450 | MS.gene41250:CDS | 25.0% |
| ! | CCTAAAATAACATTTAGATG+GGG | + | chr1.4:35336495-35336514 | MS.gene41250:intron | 25.0% |
| ! | GATTACAAATACAGATTTGT+AGG | - | chr1.4:35334831-35334850 | None:intergenic | 25.0% |
| ! | TACTTGACCTTCATATAAAA+GGG | - | chr1.4:35335497-35335516 | None:intergenic | 25.0% |
| ! | TTGGTTACAATAGTATGTAT+TGG | - | chr1.4:35336001-35336020 | None:intergenic | 25.0% |
| ! | TTTGATGTGTGTATCTTAAA+AGG | - | chr1.4:35334758-35334777 | None:intergenic | 25.0% |
| !! | AAATATATGTCATTCTAGGA+AGG | + | chr1.4:35336260-35336279 | MS.gene41250:intron | 25.0% |
| !! | AACCATATTAGGCAAATTTT+AGG | - | chr1.4:35335644-35335663 | None:intergenic | 25.0% |
| !! | TCAACAAAAAGGTTTTTACT+CGG | - | chr1.4:35334943-35334962 | None:intergenic | 25.0% |
| !! | TTTTATATGAAGGTCAAGTA+CGG | + | chr1.4:35335497-35335516 | MS.gene41250:CDS | 25.0% |
| !!! | AAAATTGTTTTGCATCACTA+TGG | + | chr1.4:35334144-35334163 | MS.gene41250:CDS | 25.0% |
| !!! | AACATGTCGAATGATTTTTT+TGG | + | chr1.4:35334886-35334905 | MS.gene41250:intron | 25.0% |
| !!! | ATTGACTTTGAAACCATATT+AGG | - | chr1.4:35335655-35335674 | None:intergenic | 25.0% |
| !!! | ATTGTGTTATGTGTTTTGTT+AGG | + | chr1.4:35336779-35336798 | MS.gene41250:intron | 25.0% |
| !!! | TTTTCTTTAGGAATGTATGA+TGG | - | chr1.4:35334254-35334273 | None:intergenic | 25.0% |
| AAGAATGTCCTCTTCAAAAA+TGG | + | chr1.4:35336834-35336853 | MS.gene41250:CDS | 30.0% | |
| AAGTATCCTATTATTGACGT+TGG | + | chr1.4:35335521-35335540 | MS.gene41250:CDS | 30.0% | |
| AATGAAAGAGTGATAGTTGT+TGG | + | chr1.4:35334047-35334066 | MS.gene41250:CDS | 30.0% | |
| AATTAAGTCTCGAGAGTTAA+AGG | + | chr1.4:35335556-35335575 | MS.gene41250:CDS | 30.0% | |
| ACGTTAGAGATAATTGACAT+TGG | + | chr1.4:35335580-35335599 | MS.gene41250:intron | 30.0% | |
| ATTCAACTGGGTTTAAGAAT+GGG | + | chr1.4:35334516-35334535 | MS.gene41250:CDS | 30.0% | |
| CACCTAAAATTTGCCTAATA+TGG | + | chr1.4:35335639-35335658 | MS.gene41250:intron | 30.0% | |
| CTGAATCTGAATTATTCTTC+AGG | - | chr1.4:35336647-35336666 | None:intergenic | 30.0% | |
| GGATTATATAAGGAATGGAT+TGG | - | chr1.4:35334115-35334134 | None:intergenic | 30.0% | |
| GTACTTGACCTTCATATAAA+AGG | - | chr1.4:35335498-35335517 | None:intergenic | 30.0% | |
| TAATAGTTTAAGGACCAAAG+TGG | + | chr1.4:35335813-35335832 | MS.gene41250:intron | 30.0% | |
| TCGTTTCATCATCAACAAAA+AGG | - | chr1.4:35334954-35334973 | None:intergenic | 30.0% | |
| TCTCTTTCGAGGATTATATA+AGG | - | chr1.4:35334125-35334144 | None:intergenic | 30.0% | |
| TGCTTAGTAAAATGGTTTAC+GGG | + | chr1.4:35335432-35335451 | MS.gene41250:CDS | 30.0% | |
| TTCGAGGATTATATAAGGAA+TGG | - | chr1.4:35334120-35334139 | None:intergenic | 30.0% | |
| ! | ATAATTGACATTGGTTGCTT+TGG | + | chr1.4:35335589-35335608 | MS.gene41250:intron | 30.0% |
| ! | CAAAACAATTTTCTCTTTCG+AGG | - | chr1.4:35334136-35334155 | None:intergenic | 30.0% |
| ! | CTTCAATTTCAGGTACAAAA+GGG | - | chr1.4:35334466-35334485 | None:intergenic | 30.0% |
| ! | CTTTTGTACCTGAAATTGAA+GGG | + | chr1.4:35334465-35334484 | MS.gene41250:CDS | 30.0% |
| ! | TCGAGACTTAATTTTGTGAA+AGG | - | chr1.4:35335549-35335568 | None:intergenic | 30.0% |
| ! | TCTGATGAAGTATTTGTCAA+TGG | + | chr1.4:35335385-35335404 | MS.gene41250:CDS | 30.0% |
| !! | ATGATCATGTTCTTGTTGTT+GGG | + | chr1.4:35334552-35334571 | MS.gene41250:CDS | 30.0% |
| !!! | CCCCATCTAAATGTTATTTT+AGG | - | chr1.4:35336498-35336517 | None:intergenic | 30.0% |
| AAGGCTAAGAATAAGGATTC+TGG | + | chr1.4:35334383-35334402 | MS.gene41250:CDS | 35.0% | |
| AAGGTTCCAACGTCAATAAT+AGG | - | chr1.4:35335530-35335549 | None:intergenic | 35.0% | |
| AGTATGTGGGGGAATAATTA+CGG | - | chr1.4:35336091-35336110 | None:intergenic | 35.0% | |
| CATTCAACTGGGTTTAAGAA+TGG | + | chr1.4:35334515-35334534 | MS.gene41250:CDS | 35.0% | |
| CTTAAGCATTCTATTTCAGC+TGG | - | chr1.4:35336810-35336829 | None:intergenic | 35.0% | |
| GCTGAAATAGAATGCTTAAG+TGG | + | chr1.4:35336810-35336829 | MS.gene41250:CDS | 35.0% | |
| GCTTAGTAAAATGGTTTACG+GGG | + | chr1.4:35335433-35335452 | MS.gene41250:CDS | 35.0% | |
| GGAAAGTGATTCATTCAACT+GGG | + | chr1.4:35334504-35334523 | MS.gene41250:CDS | 35.0% | |
| TAAGAATAAGGATTCTGGTG+AGG | + | chr1.4:35334388-35334407 | MS.gene41250:CDS | 35.0% | |
| TCAACTGTTCTGTGATAAAG+AGG | - | chr1.4:35334323-35334342 | None:intergenic | 35.0% | |
| ! | AAGGGTTGAAGAGTTTTACT+GGG | + | chr1.4:35334483-35334502 | MS.gene41250:CDS | 35.0% |
| ! | ATGTATGATGGAAAAGAAGG+TGG | - | chr1.4:35334242-35334261 | None:intergenic | 35.0% |
| ! | CCTTCAATTTCAGGTACAAA+AGG | - | chr1.4:35334467-35334486 | None:intergenic | 35.0% |
| ! | CCTTTTGTACCTGAAATTGA+AGG | + | chr1.4:35334464-35334483 | MS.gene41250:CDS | 35.0% |
| ! | GAAGTATTTGTCAATGGAGA+TGG | + | chr1.4:35335391-35335410 | MS.gene41250:CDS | 35.0% |
| ! | GACTCTATTATTTTCTGCAC+CGG | + | chr1.4:35336873-35336892 | MS.gene41250:CDS | 35.0% |
| ! | GATGATCATGTTCTTGTTGT+TGG | + | chr1.4:35334551-35334570 | MS.gene41250:CDS | 35.0% |
| ! | GATGGTGATGCTTAGTAAAA+TGG | + | chr1.4:35335424-35335443 | MS.gene41250:CDS | 35.0% |
| ! | GGAATATGAAGGAAGGTTTT+TGG | + | chr1.4:35334415-35334434 | MS.gene41250:CDS | 35.0% |
| ! | GGAATGTATGATGGAAAAGA+AGG | - | chr1.4:35334245-35334264 | None:intergenic | 35.0% |
| ! | GTTAGCTGTTGATTATACGT+AGG | + | chr1.4:35335237-35335256 | MS.gene41250:intron | 35.0% |
| ! | TAAATTTGAGACAGAGCACA+TGG | - | chr1.4:35334806-35334825 | None:intergenic | 35.0% |
| ! | TGTATGATGGAAAAGAAGGT+GGG | - | chr1.4:35334241-35334260 | None:intergenic | 35.0% |
| !! | ATGATGAAGGTTCTGAGAAA+TGG | + | chr1.4:35334354-35334373 | MS.gene41250:CDS | 35.0% |
| !! | GCAATTGACCATTTTTGAAG+AGG | - | chr1.4:35336845-35336864 | None:intergenic | 35.0% |
| !!! | GCTCGCAAAATTGTTTTTTG+AGG | - | chr1.4:35334202-35334221 | None:intergenic | 35.0% |
| AGGTTGAGGAATATGAAGGA+AGG | + | chr1.4:35334408-35334427 | MS.gene41250:CDS | 40.0% | |
| ATATAAAAGGGACCCTCACT+AGG | - | chr1.4:35335485-35335504 | None:intergenic | 40.0% | |
| CTCTTCAACCCTTCAATTTC+AGG | - | chr1.4:35334476-35334495 | None:intergenic | 40.0% | |
| GAAGGTGAAGGCTAAGAATA+AGG | + | chr1.4:35334376-35334395 | MS.gene41250:CDS | 40.0% | |
| GAGAATGCAGAGTATGATGA+AGG | + | chr1.4:35334341-35334360 | MS.gene41250:CDS | 40.0% | |
| GCATTGGATCTTATCAACCA+TGG | + | chr1.4:35334599-35334618 | MS.gene41250:CDS | 40.0% | |
| GGGAAAGTGATTCATTCAAC+TGG | + | chr1.4:35334503-35334522 | MS.gene41250:CDS | 40.0% | |
| GTATGTGGGGGAATAATTAC+GGG | - | chr1.4:35336090-35336109 | None:intergenic | 40.0% | |
| GTATTTGTCAATGGAGATGG+TGG | + | chr1.4:35335394-35335413 | MS.gene41250:CDS | 40.0% | |
| GTTGTTGTGACATGACGAAT+GGG | + | chr1.4:35336755-35336774 | MS.gene41250:intron | 40.0% | |
| TAATTGACGGGATGAATGAG+TGG | + | chr1.4:35335174-35335193 | MS.gene41250:intron | 40.0% | |
| TATGTGGGGGAATAATTACG+GGG | - | chr1.4:35336089-35336108 | None:intergenic | 40.0% | |
| TCAATAGATCAACCCACAAG+TGG | + | chr1.4:35336898-35336917 | MS.gene41250:CDS | 40.0% | |
| TGTTGTTGTGACATGACGAA+TGG | + | chr1.4:35336754-35336773 | MS.gene41250:intron | 40.0% | |
| TTCAATCGTTGTTCGAAGCA+AGG | + | chr1.4:35334631-35334650 | MS.gene41250:CDS | 40.0% | |
| TTCTGGCATGGAAATTGCAT+TGG | + | chr1.4:35334583-35334602 | MS.gene41250:CDS | 40.0% | |
| ! | CAGGTTCACATTTTGTCAAG+GGG | + | chr1.4:35335341-35335360 | MS.gene41250:intron | 40.0% |
| ! | GAAGGGTTGAAGAGTTTTAC+TGG | + | chr1.4:35334482-35334501 | MS.gene41250:CDS | 40.0% |
| ! | GCAGGTTCACATTTTGTCAA+GGG | + | chr1.4:35335340-35335359 | MS.gene41250:intron | 40.0% |
| ! | TCAAGGGGTATGCTGAATTT+GGG | + | chr1.4:35335356-35335375 | MS.gene41250:CDS | 40.0% |
| ! | TGAGGGTCCCTTTTATATGA+AGG | + | chr1.4:35335487-35335506 | MS.gene41250:CDS | 40.0% |
| ! | TGCAGGTTCACATTTTGTCA+AGG | + | chr1.4:35335339-35335358 | MS.gene41250:intron | 40.0% |
| ! | TTCTGAGAAATGGAAGGTGA+AGG | + | chr1.4:35334364-35334383 | MS.gene41250:CDS | 40.0% |
| !! | ATGTTCTTGTTGTTGGGTCT+GGG | + | chr1.4:35334558-35334577 | MS.gene41250:CDS | 40.0% |
| !! | CGATTGAAGTTTTAGCACCA+TGG | - | chr1.4:35334619-35334638 | None:intergenic | 40.0% |
| !! | GGTGAGAGAGTATTGGTTTA+AGG | + | chr1.4:35335834-35335853 | MS.gene41250:intron | 40.0% |
| !! | TGAAGGTTCTGAGAAATGGA+AGG | + | chr1.4:35334358-35334377 | MS.gene41250:CDS | 40.0% |
| !!! | TGAAGGAAGGTTTTTGGTTG+TGG | + | chr1.4:35334421-35334440 | MS.gene41250:CDS | 40.0% |
| AATCTTACCACCTTCCGTGA+AGG | - | chr1.4:35335067-35335086 | None:intergenic | 45.0% | |
| ACGGGGATGTCACGAATTAT+GGG | + | chr1.4:35335450-35335469 | MS.gene41250:CDS | 45.0% | |
| ACGGGGATGTCACGAATTAT+GGG | - | chr1.4:35335469-35335450 | None:intergenic | 45.0% | |
| AGAGTGATAGTTGTTGGAGC+AGG | + | chr1.4:35334053-35334072 | MS.gene41250:CDS | 45.0% | |
| ATCTTACCACCTTCCGTGAA+GGG | - | chr1.4:35335066-35335085 | None:intergenic | 45.0% | |
| CCAATACTCTCTCACCACTT+TGG | - | chr1.4:35335830-35335849 | None:intergenic | 45.0% | |
| CTTCCGTGAAGGGAATATGT+GGG | - | chr1.4:35335056-35335075 | None:intergenic | 45.0% | |
| GATGGAAAAGAAGGTGGGAA+TGG | - | chr1.4:35334236-35334255 | None:intergenic | 45.0% | |
| GATGTCACGAATTATGGGGT+TGG | + | chr1.4:35335455-35335474 | MS.gene41250:CDS | 45.0% | |
| GGTGAGGTTGAGGAATATGA+AGG | + | chr1.4:35334404-35334423 | MS.gene41250:CDS | 45.0% | |
| TAAGGATTCTGGTGAGGTTG+AGG | + | chr1.4:35334394-35334413 | MS.gene41250:CDS | 45.0% | |
| TACGGGGATGTCACGAATTA+TGG | + | chr1.4:35335449-35335468 | MS.gene41250:CDS | 45.0% | |
| TACGGGGATGTCACGAATTA+TGG | - | chr1.4:35335468-35335449 | None:intergenic | 45.0% | |
| TTCCCCACATATTCCCTTCA+CGG | + | chr1.4:35335050-35335069 | MS.gene41250:intron | 45.0% | |
| TTCCGTGAAGGGAATATGTG+GGG | - | chr1.4:35335055-35335074 | None:intergenic | 45.0% | |
| ! | CAAGGGGTATGCTGAATTTG+GGG | + | chr1.4:35335357-35335376 | MS.gene41250:CDS | 45.0% |
| ! | CCAAAGTGGTGAGAGAGTAT+TGG | + | chr1.4:35335827-35335846 | MS.gene41250:intron | 45.0% |
| ! | GTCAAGGGGTATGCTGAATT+TGG | + | chr1.4:35335355-35335374 | MS.gene41250:CDS | 45.0% |
| ! | TCACGAATTATGGGGTTGGT+AGG | + | chr1.4:35335459-35335478 | MS.gene41250:CDS | 45.0% |
| ! | TCAGGCGAGTTACTTTGCTT+GGG | - | chr1.4:35336629-35336648 | None:intergenic | 45.0% |
| ! | TTCAGGCGAGTTACTTTGCT+TGG | - | chr1.4:35336630-35336649 | None:intergenic | 45.0% |
| !! | CATGTTCTTGTTGTTGGGTC+TGG | + | chr1.4:35334557-35334576 | MS.gene41250:CDS | 45.0% |
| !! | GGAGATGGTGGATTTAGTGA+TGG | + | chr1.4:35335406-35335425 | MS.gene41250:CDS | 45.0% |
| !! | GTGGGTTGATCTATTGAAGC+CGG | - | chr1.4:35336895-35336914 | None:intergenic | 45.0% |
| !!! | AGGTTTTTGGTTGTGGCTAG+TGG | + | chr1.4:35334428-35334447 | MS.gene41250:CDS | 45.0% |
| CATATTCCCTTCACGGAAGG+TGG | + | chr1.4:35335057-35335076 | MS.gene41250:intron | 50.0% | |
| CCACATATTCCCTTCACGGA+AGG | + | chr1.4:35335054-35335073 | MS.gene41250:intron | 50.0% | |
| CCTTCCGTGAAGGGAATATG+TGG | - | chr1.4:35335057-35335076 | None:intergenic | 50.0% | |
| CGGGGATGTCACGAATTATG+GGG | + | chr1.4:35335451-35335470 | MS.gene41250:CDS | 50.0% | |
| CGGGGATGTCACGAATTATG+GGG | - | chr1.4:35335470-35335451 | None:intergenic | 50.0% | |
| CTGCTACTGAGAGACCAGAA+GGG | - | chr1.4:35334079-35334098 | None:intergenic | 50.0% | |
| GTTGTTGGGTCTGGGAATTC+TGG | + | chr1.4:35334566-35334585 | MS.gene41250:CDS | 50.0% | |
| ! | CAGGCGAGTTACTTTGCTTG+GGG | - | chr1.4:35336628-35336647 | None:intergenic | 50.0% |
| ! | GAAGGTGGGAATGGTTTGTG+AGG | - | chr1.4:35334227-35334246 | None:intergenic | 50.0% |
| GCTGCTACTGAGAGACCAGA+AGG | - | chr1.4:35334080-35334099 | None:intergenic | 55.0% | |
| TGGGTCTGGGAATTCTGGCA+TGG | + | chr1.4:35334571-35334590 | MS.gene41250:CDS | 55.0% | |
| GTTGTTGGAGCAGGCCCTTC+TGG | + | chr1.4:35334062-35334081 | MS.gene41250:CDS | 60.0% | |
| !! | GGGGTTGGTAGGCCTAGTGA+GGG | + | chr1.4:35335470-35335489 | MS.gene41250:CDS | 60.0% |
| !! | TGGGGTTGGTAGGCCTAGTG+AGG | + | chr1.4:35335469-35335488 | MS.gene41250:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 35334035 | 35336926 | 35334035 | ID=MS.gene41250 |
| chr1.4 | mRNA | 35334035 | 35336926 | 35334035 | ID=MS.gene41250.t1;Parent=MS.gene41250 |
| chr1.4 | exon | 35334035 | 35334652 | 35334035 | ID=MS.gene41250.t1.exon1;Parent=MS.gene41250.t1 |
| chr1.4 | CDS | 35334035 | 35334652 | 35334035 | ID=cds.MS.gene41250.t1;Parent=MS.gene41250.t1 |
| chr1.4 | exon | 35335344 | 35335577 | 35335344 | ID=MS.gene41250.t1.exon2;Parent=MS.gene41250.t1 |
| chr1.4 | CDS | 35335344 | 35335577 | 35335344 | ID=cds.MS.gene41250.t1;Parent=MS.gene41250.t1 |
| chr1.4 | exon | 35336801 | 35336926 | 35336801 | ID=MS.gene41250.t1.exon3;Parent=MS.gene41250.t1 |
| chr1.4 | CDS | 35336801 | 35336926 | 35336801 | ID=cds.MS.gene41250.t1;Parent=MS.gene41250.t1 |
| Gene Sequence |
| Protein sequence |
