AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41325

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41325.t1 MTR_1g048160 96.187 577 19 1 1 577 8 581 0.0 1139
MS.gene41325.t1 MTR_7g114130 88.388 577 66 1 1 576 8 584 0.0 1062
MS.gene41325.t1 MTR_8g096190 60.209 573 217 6 1 565 8 577 0.0 699
MS.gene41325.t1 MTR_8g096190 59.266 545 211 6 1 537 8 549 0.0 652
MS.gene41325.t1 MTR_7g114100 72.955 440 82 5 141 577 13 418 0.0 629
MS.gene41325.t1 MTR_8g096190 57.752 516 207 6 1 508 8 520 0.0 603
MS.gene41325.t1 MTR_7g033100 31.600 250 128 7 330 556 107 336 3.60e-22 100
MS.gene41325.t1 MTR_7g033100 32.143 252 124 9 330 556 107 336 4.89e-22 99.0
MS.gene41325.t1 MTR_6g092020 27.829 327 184 11 266 563 4 307 4.94e-21 95.9
MS.gene41325.t1 MTR_3g086520 31.349 252 126 10 330 556 125 354 1.33e-20 95.5
MS.gene41325.t1 MTR_3g086520 32.016 253 123 10 330 556 125 354 1.40e-20 95.5
MS.gene41325.t1 MTR_3g086520 32.016 253 123 10 330 556 122 351 1.82e-20 95.1
MS.gene41325.t1 MTR_2g063843 27.796 313 170 11 294 573 51 340 2.52e-20 94.0
MS.gene41325.t1 MTR_2g063857 27.796 313 169 9 296 573 61 351 3.50e-20 93.6
MS.gene41325.t1 MTR_2g063857 28.165 316 168 11 294 573 59 351 3.73e-20 93.2
MS.gene41325.t1 MTR_2g063907 30.000 260 133 9 330 563 81 317 4.13e-20 93.2
MS.gene41325.t1 MTR_8g089670 30.800 250 130 8 330 556 132 361 5.20e-20 93.6
MS.gene41325.t1 MTR_6g092100 29.242 277 141 9 330 573 29 283 6.64e-20 90.9
MS.gene41325.t1 MTR_3g075530 29.730 259 138 8 324 558 88 326 1.17e-19 92.0
MS.gene41325.t1 MTR_8g447220 29.804 255 132 9 330 559 80 312 3.48e-19 89.4
MS.gene41325.t1 MTR_8g447220 29.921 254 131 9 330 558 80 311 7.59e-19 89.4
MS.gene41325.t1 MTR_6g021730 27.707 314 169 10 281 556 63 356 9.73e-19 89.7
MS.gene41325.t1 MTR_3g096520 30.147 272 139 11 315 556 87 337 1.43e-18 89.0
MS.gene41325.t1 MTR_3g096520 30.147 272 139 11 315 556 87 337 1.49e-18 89.0
MS.gene41325.t1 MTR_3g096520 30.147 272 139 11 315 556 104 354 1.70e-18 89.0
MS.gene41325.t1 MTR_7g081170 28.205 156 93 4 359 504 85 231 1.21e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41325.t1 AT1G08860 67.308 572 180 3 1 566 9 579 0.0 807
MS.gene41325.t1 AT5G61910 61.679 548 206 3 21 566 799 1344 0.0 712
MS.gene41325.t1 AT5G61900 61.191 554 211 3 15 566 25 576 0.0 709
MS.gene41325.t1 AT5G61900 61.191 554 211 3 15 566 25 576 0.0 709
MS.gene41325.t1 AT5G07300 57.762 554 228 3 15 563 24 576 0.0 677
MS.gene41325.t1 AT1G67800 30.566 265 141 7 330 571 93 337 7.90e-23 102
MS.gene41325.t1 AT1G67800 30.566 265 141 7 330 571 93 337 7.90e-23 102
MS.gene41325.t1 AT1G67800 30.566 265 141 7 330 571 93 337 7.90e-23 102
MS.gene41325.t1 AT1G67800 30.566 265 141 7 330 571 93 337 7.90e-23 102
MS.gene41325.t1 AT1G67800 30.566 265 141 7 330 571 113 357 1.09e-22 101
MS.gene41325.t1 AT1G67800 31.349 252 130 7 330 558 113 344 1.25e-22 100
MS.gene41325.t1 AT3G01650 31.200 250 129 7 330 556 156 385 7.51e-21 96.3
MS.gene41325.t1 AT3G01650 31.200 250 129 7 330 556 156 385 7.51e-21 96.3
MS.gene41325.t1 AT1G79380 29.348 276 146 10 315 561 58 313 3.23e-20 93.6
MS.gene41325.t1 AT5G63970 29.310 290 154 11 315 574 16 284 4.00e-20 92.8
MS.gene41325.t1 AT5G63970 29.310 290 154 11 315 574 16 284 4.00e-20 92.8
MS.gene41325.t1 AT5G14420 30.000 250 132 7 330 556 122 351 1.01e-19 92.8
MS.gene41325.t1 AT5G14420 30.000 250 132 7 330 556 122 351 1.01e-19 92.8
MS.gene41325.t1 AT5G14420 30.000 250 132 7 330 556 122 351 1.01e-19 92.8
MS.gene41325.t1 AT5G14420 30.000 250 132 7 330 556 122 351 1.01e-19 92.8

Find 131 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATCAGGACCCACTTTATT+TGG 0.094507 1.2:+31147895 MS.gene41325:CDS
CTCTGTTGTGCAAGCTCTTT+TGG 0.155517 1.2:+31148699 MS.gene41325:CDS
AAAATTTATGTAGGCTATTA+TGG 0.157095 1.2:+31147220 MS.gene41325:intron
AGACAAAGTGGTCTCCATTT+TGG 0.193575 1.2:-31146307 None:intergenic
AGAACTACCTAGTCAATTTC+TGG 0.215067 1.2:+31148723 MS.gene41325:CDS
CAGTTTCCTGCTTGGGGATT+TGG 0.225046 1.2:+31147281 MS.gene41325:CDS
TGCTTTAACCACGGCATCTA+TGG 0.245255 1.2:-31148148 None:intergenic
TTGTTGGTTGTTGCAGATTC+AGG 0.267952 1.2:-31143840 None:intergenic
TGGATTTGAACTAAACTTCT+TGG 0.283622 1.2:+31146888 MS.gene41325:CDS
ATAACTTCCGTCTTGAAAAT+AGG 0.307256 1.2:-31146268 None:intergenic
CCCTTATCGATTCTTATAGT+TGG 0.331752 1.2:+31148180 MS.gene41325:CDS
TTACGCAGTGTCACGCTATC+AGG 0.336454 1.2:+31147880 MS.gene41325:CDS
TGATAAGCAGTTTCCTGCTT+GGG 0.349559 1.2:+31147274 MS.gene41325:CDS
ACGACAATTTAAATCCAAAA+TGG 0.352815 1.2:+31146293 MS.gene41325:CDS
TAGAGGGTGCATGAGGGAAA+TGG 0.357254 1.2:-31148783 None:intergenic
TCCCTATGTGTTTAGGTTGT+AGG 0.360607 1.2:+31147823 MS.gene41325:intron
AGCATGTAACTTACTTGATC+TGG 0.364428 1.2:+31144860 MS.gene41325:CDS
GGTTAAGCTCCTGCTTGGTT+TGG 0.381608 1.2:-31145948 None:intergenic
CAGATACTGGATGCTGATAA+TGG 0.384187 1.2:+31148334 MS.gene41325:intron
GATGGCAAATTGGAAGAATT+AGG 0.387750 1.2:+31145102 MS.gene41325:CDS
TGTCTTAATTTCCAGCAGTT+TGG 0.391943 1.2:+31146325 MS.gene41325:CDS
TGTAGGAATTGAAGGCATAA+TGG 0.403444 1.2:+31147840 MS.gene41325:CDS
AATAGTTTACAAACCTTTGT+GGG 0.404665 1.2:-31145361 None:intergenic
TCTGAAGGGTCAACTCTTTG+TGG 0.407921 1.2:+31146816 MS.gene41325:CDS
GATAACTGGTCCAAATAAAG+TGG 0.410564 1.2:-31147905 None:intergenic
AGAGGGTGCATGAGGGAAAT+GGG 0.414626 1.2:-31148782 None:intergenic
ATCGACGGCGTCATTGTTGT+TGG 0.415859 1.2:-31143856 None:intergenic
TGTGCAGCCATGTTGATAAC+TGG 0.419195 1.2:-31147919 None:intergenic
CAAGCAGGAGCTTAACCTTA+AGG 0.422863 1.2:+31145954 MS.gene41325:CDS
TCGATGTAATGCAAAGAATC+TGG 0.423247 1.2:-31147042 None:intergenic
TTGGTTGCGGTAGATTTCAC+TGG 0.425129 1.2:+31146907 MS.gene41325:CDS
GTTTAGGTTGTAGGAATTGA+AGG 0.426966 1.2:+31147832 MS.gene41325:intron
CAGATTAAAACAATGAGATA+TGG 0.429091 1.2:-31147324 None:intergenic
GAAATTTCAGAGTGATCCTA+TGG 0.433621 1.2:+31145056 MS.gene41325:intron
TTGTAAAATCTATTGAATAG+AGG 0.435997 1.2:-31148800 None:intergenic
ACCAACTATAAGAATCGATA+AGG 0.436043 1.2:-31148181 None:intergenic
CTTACTTTGTACTTCTCTCA+TGG 0.444065 1.2:-31148416 None:intergenic
TATCAACATGGCTGCACAAA+TGG 0.446356 1.2:+31147924 MS.gene41325:CDS
TTACTTTACTTCCAAACTGC+TGG 0.447464 1.2:-31146336 None:intergenic
TTTCCTGCTTGGGGATTTGG+AGG 0.449938 1.2:+31147284 MS.gene41325:CDS
GAATAGTTTACAAACCTTTG+TGG 0.453878 1.2:-31145362 None:intergenic
AACTGTCTCCTCAGCATGAA+TGG 0.454232 1.2:-31146026 None:intergenic
AGTGGCAATCATGCACTTAT+CGG 0.455820 1.2:+31146486 MS.gene41325:CDS
TGTAAAATCTATTGAATAGA+GGG 0.457642 1.2:-31148799 None:intergenic
AAAGAAAGGAGATGGCAAAT+TGG 0.459334 1.2:+31145092 MS.gene41325:CDS
CTGAATGATCAAGAATTCCT+TGG 0.460295 1.2:+31145632 MS.gene41325:CDS
ATGTAGGCTATTATGGAGGT+TGG 0.461256 1.2:+31147227 MS.gene41325:intron
TGTGGATCAATATTGTGAAA+AGG 0.461879 1.2:+31146834 MS.gene41325:CDS
CTGATAAGCAGTTTCCTGCT+TGG 0.464590 1.2:+31147273 MS.gene41325:CDS
TTCTTTATTATAGGTTCTGA+AGG 0.465940 1.2:+31146801 MS.gene41325:intron
ACAATGAGATATGGTACCTC+CGG 0.467091 1.2:-31147315 None:intergenic
TTACTTTGTACTTCTCTCAT+GGG 0.469535 1.2:-31148415 None:intergenic
TATCTTCCGTTGCTCTCACT+TGG 0.470928 1.2:+31146072 MS.gene41325:CDS
CATAACGAACTGTTTGAATC+CGG 0.472537 1.2:+31145137 MS.gene41325:CDS
AATAGTAGTCAAATAAATCA+AGG 0.473244 1.2:+31145995 MS.gene41325:CDS
TTGCATTACATCGATTTATC+CGG 0.473940 1.2:+31147051 MS.gene41325:CDS
ACTCTTGATATCCTTAGAAA+AGG 0.477739 1.2:-31146223 None:intergenic
TCGGTTAAATTCATACCAAA+AGG 0.481359 1.2:+31147074 MS.gene41325:CDS
GAAGGCATAATGGAGGCTTA+TGG 0.482278 1.2:+31147850 MS.gene41325:CDS
GATTTCTTCTACACCGCTCA+AGG 0.483038 1.2:+31143876 MS.gene41325:CDS
GGCTGCACAAATGGCTGCAG+AGG 0.485291 1.2:+31147933 MS.gene41325:CDS
TTTCTCACCTCGGAGCTAGT+TGG 0.488771 1.2:-31147356 None:intergenic
GTGGCAATCATGCACTTATC+GGG 0.491516 1.2:+31146487 MS.gene41325:CDS
TCTTGTCCATTGCGTGTGGA+TGG 0.491556 1.2:-31146697 None:intergenic
CTTAAGGTTAAGCTCCTGCT+TGG 0.492355 1.2:-31145953 None:intergenic
TTTGCATATACCACAGCCAT+AGG 0.503237 1.2:-31145072 None:intergenic
TGATCTGGACATTGCATCAA+AGG 0.506204 1.2:+31144875 MS.gene41325:CDS
TGCAAAGAATCTGGCTGTTG+AGG 0.510911 1.2:-31147033 None:intergenic
TCGATTCTTATAGTTGGTGT+TGG 0.511769 1.2:+31148186 MS.gene41325:CDS
CGTCGCTTGAAAAGTTCTAC+TGG 0.512377 1.2:+31148358 MS.gene41325:CDS
GACATTGACACATCATATCA+TGG 0.517697 1.2:+31145334 MS.gene41325:CDS
TGAACTAAACTTCTTGGTTG+CGG 0.519654 1.2:+31146894 MS.gene41325:CDS
ATATCAAGAGTGGTTGAGAG+TGG 0.522006 1.2:+31146235 MS.gene41325:CDS
GATAAGCAGTTTCCTGCTTG+GGG 0.534286 1.2:+31147275 MS.gene41325:CDS
TCAAAACACTCAATAAGTAA+TGG 0.535000 1.2:-31146453 None:intergenic
TAGTGCTGTTATATGATGAA+AGG 0.540610 1.2:-31147957 None:intergenic
CCAACTATAAGAATCGATAA+GGG 0.543759 1.2:-31148180 None:intergenic
AGTGCTGTTATATGATGAAA+GGG 0.545112 1.2:-31147956 None:intergenic
CTATGTATTGCTTATCATAA+CGG 0.550933 1.2:+31147984 MS.gene41325:CDS
TTTATTGACTACATATCTAG+TGG 0.553134 1.2:+31146868 MS.gene41325:CDS
AAGCGCTGATTTCAAGAGCA+TGG 0.554254 1.2:+31148209 MS.gene41325:CDS
CAATGAGATATGGTACCTCC+GGG 0.558114 1.2:-31147314 None:intergenic
CGAACTGTTTGAATCCGGAA+TGG 0.558135 1.2:+31145142 MS.gene41325:CDS
TTGGTATGAATTTAACCGAC+CGG 0.559167 1.2:-31147070 None:intergenic
ATAGTAGTCAAATAAATCAA+GGG 0.568639 1.2:+31145996 MS.gene41325:CDS
CTTCTCTTGTCCATTGCGTG+TGG 0.575583 1.2:-31146701 None:intergenic
TTTCCTCCAAATCCCCAAGC+AGG 0.575985 1.2:-31147287 None:intergenic
GCTGTGGTATATGCAAAGAA+AGG 0.576181 1.2:+31145078 MS.gene41325:CDS
GTCATGCCATCCACACGCAA+TGG 0.577672 1.2:+31146691 MS.gene41325:CDS
GCCATTGTTTACCAATGTCG+AGG 0.577910 1.2:+31143905 MS.gene41325:CDS
TGCTGGAAATTAAGACAAAG+TGG 0.581538 1.2:-31146319 None:intergenic
TATTGAATAGAGGGTGCATG+AGG 0.582257 1.2:-31148790 None:intergenic
TCAGAGTGATCCTATGGCTG+TGG 0.582904 1.2:+31145062 MS.gene41325:intron
TACTTTGTACTTCTCTCATG+GGG 0.583824 1.2:-31148414 None:intergenic
TATATATGTCCAGCTTCGAA+TGG 0.586294 1.2:+31147006 MS.gene41325:intron
CACACGCAATGGACAAGAGA+AGG 0.587694 1.2:+31146702 MS.gene41325:CDS
GGCAATTACCATTCATGCTG+AGG 0.588514 1.2:+31146018 MS.gene41325:CDS
TCAAGAGTGGTTGAGAGTGG+AGG 0.591973 1.2:+31146238 MS.gene41325:CDS
ACCTTAAGGCTTCAAAACAA+AGG 0.593551 1.2:+31145968 MS.gene41325:CDS
GGCTAGTTGCACTTTATCAG+AGG 0.599539 1.2:+31145658 MS.gene41325:CDS
GTATATGCAAAGAAAGGAGA+TGG 0.599811 1.2:+31145084 MS.gene41325:CDS
AAGTGCAACTAGCCTCTCCA+AGG 0.602063 1.2:-31145649 None:intergenic
AGATTGTGACCAAACCAAGC+AGG 0.609422 1.2:+31145939 MS.gene41325:intron
ATTTATGTAGGCTATTATGG+AGG 0.610538 1.2:+31147223 MS.gene41325:intron
TCTTTATTATAGGTTCTGAA+GGG 0.611405 1.2:+31146802 MS.gene41325:intron
TTAAGGCTTCAAAACAAAGG+AGG 0.617378 1.2:+31145971 MS.gene41325:CDS
AATCGTACATACCTCGACAT+TGG 0.617770 1.2:-31143916 None:intergenic
TAAGGCTTCAAAACAAAGGA+GGG 0.618624 1.2:+31145972 MS.gene41325:CDS
TCAAGAAACCATAGATGCCG+TGG 0.622068 1.2:+31148140 MS.gene41325:CDS
AAGATCAGATGCTTTAACCA+CGG 0.627462 1.2:-31148157 None:intergenic
TGAAGGATAGCTTACACAAG+TGG 0.629629 1.2:-31145207 None:intergenic
ACCTCGACATTGGTAAACAA+TGG 0.630957 1.2:-31143906 None:intergenic
ATATCATGGTGTTCCCACAA+AGG 0.631966 1.2:+31145348 MS.gene41325:CDS
ATAACTGGTCCAAATAAAGT+GGG 0.632296 1.2:-31147904 None:intergenic
GGATTTGGAGGAAAGATACC+CGG 0.639302 1.2:+31147296 MS.gene41325:CDS
GCAGCGAAAGAAGCAGTAGG+AGG 0.639513 1.2:+31143810 MS.gene41325:CDS
TAGTAGTCAAATAAATCAAG+GGG 0.641244 1.2:+31145997 MS.gene41325:CDS
ATGAAAGCCAGAAATTGACT+AGG 0.645745 1.2:-31148730 None:intergenic
AGGAATTGAAGGCATAATGG+AGG 0.647386 1.2:+31147843 MS.gene41325:CDS
TGATCAAGAATTCCTTGGAG+AGG 0.649527 1.2:+31145637 MS.gene41325:CDS
AAAGCAGCGAAAGAAGCAGT+AGG 0.650157 1.2:+31143807 MS.gene41325:CDS
ATTTGGACCAGTTATCAACA+TGG 0.650980 1.2:+31147912 MS.gene41325:CDS
TGTTATCCAAGTGAGAGCAA+CGG 0.656188 1.2:-31146078 None:intergenic
CAATGGCTGAAAACCTTGAG+CGG 0.661576 1.2:-31143889 None:intergenic
ATTGAATAGAGGGTGCATGA+GGG 0.680710 1.2:-31148789 None:intergenic
TGAGGGAAATGGGAAACGAG+TGG 0.685062 1.2:-31148772 None:intergenic
ATTACATCGATTTATCCGGT+CGG 0.702197 1.2:+31147055 MS.gene41325:CDS
AGCGGTGTAGAAGAAATCGA+CGG 0.704432 1.2:-31143871 None:intergenic
CGCTGATTTCAAGAGCATGG+AGG 0.715202 1.2:+31148212 MS.gene41325:CDS
TGGGAGTCCAACTAGCTCCG+AGG 0.726055 1.2:+31147349 MS.gene41325:CDS
TTTGGAGGAAAGATACCCGG+AGG 0.768868 1.2:+31147299 MS.gene41325:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGATTAAATTTCTTTATTAT+AGG + chr1.2:31146792-31146811 MS.gene41325:intron 10.0%
!!! ATAATCAATTTTTATAACTT+TGG + chr1.2:31144423-31144442 MS.gene41325:intron 10.0%
!!! ATAGATTTTTTTACAATAAA+TGG - chr1.2:31144333-31144352 None:intergenic 10.0%
!!! ACTTATTACTCTTAAATTTT+TGG + chr1.2:31148570-31148589 MS.gene41325:intron 15.0%
!!! TATATTAATTTTCGAAATGA+AGG - chr1.2:31145227-31145246 None:intergenic 15.0%
!! AAAAGAAGTTAAAAAAAGGT+AGG - chr1.2:31147189-31147208 None:intergenic 20.0%
!! AAAATTGATTATGACATGTT+TGG - chr1.2:31144415-31144434 None:intergenic 20.0%
!! AAAATTTATGTAGGCTATTA+TGG + chr1.2:31147220-31147239 MS.gene41325:intron 20.0%
!! AAATTGATTATGACATGTTT+GGG - chr1.2:31144414-31144433 None:intergenic 20.0%
!! AAGAAATTTAATCAAGTGTA+AGG - chr1.2:31146786-31146805 None:intergenic 20.0%
!! AATAGTAGTCAAATAAATCA+AGG + chr1.2:31145995-31146014 MS.gene41325:CDS 20.0%
!! ACCAAAAAGAAGTTAAAAAA+AGG - chr1.2:31147193-31147212 None:intergenic 20.0%
!! AGAAAAAAACATCAACTATA+CGG + chr1.2:31145515-31145534 MS.gene41325:intron 20.0%
!! ATAGTAGTCAAATAAATCAA+GGG + chr1.2:31145996-31146015 MS.gene41325:CDS 20.0%
!! TATGGCTGAAATATATTATT+TGG + chr1.2:31144497-31144516 MS.gene41325:intron 20.0%
!! TGTAAATCAATTATAATCGT+CGG - chr1.2:31148018-31148037 None:intergenic 20.0%
!! TTTCAAAACTAATTCTTCAT+TGG - chr1.2:31144738-31144757 None:intergenic 20.0%
!!! ACCTTTTTTTAACTTCTTTT+TGG + chr1.2:31147189-31147208 MS.gene41325:intron 20.0%
!!! AGAAATTCTCTGTTATTTTT+AGG + chr1.2:31147374-31147393 MS.gene41325:intron 20.0%
!!! ATCGAATTCAAGTTATATTT+TGG + chr1.2:31146743-31146762 MS.gene41325:intron 20.0%
!!! ATTTTCAACTTTAAACTTGA+TGG - chr1.2:31148539-31148558 None:intergenic 20.0%
!!! GTTCTGAATAAAATTTATGT+AGG + chr1.2:31147211-31147230 MS.gene41325:intron 20.0%
!!! TAAAGAGTTGATATGAAAAT+TGG - chr1.2:31147686-31147705 None:intergenic 20.0%
!!! TAGTTTGGAATAATTTTAGA+TGG + chr1.2:31145544-31145563 MS.gene41325:intron 20.0%
!!! TTGTAAAATTGATTTGAAGA+TGG + chr1.2:31144023-31144042 MS.gene41325:intron 20.0%
! AAGGAAAAGAAATTTAGAGA+AGG - chr1.2:31148249-31148268 None:intergenic 25.0%
! AATAGTTTACAAACCTTTGT+GGG - chr1.2:31145364-31145383 None:intergenic 25.0%
! AATATAGCAATGAGATTATG+AGG + chr1.2:31145241-31145260 MS.gene41325:intron 25.0%
! ACGACAATTTAAATCCAAAA+TGG + chr1.2:31146293-31146312 MS.gene41325:CDS 25.0%
! AGAATCAGAAATGTAATATC+AGG - chr1.2:31144688-31144707 None:intergenic 25.0%
! AGAATTAAGATTATGGTCTA+TGG + chr1.2:31145863-31145882 MS.gene41325:intron 25.0%
! AGGTTTATTATTACAGATAC+TGG + chr1.2:31148321-31148340 MS.gene41325:intron 25.0%
! AGTTGAATACCATAAGTAAT+TGG - chr1.2:31144817-31144836 None:intergenic 25.0%
! ATGTATCAAGTTCATGATTA+AGG - chr1.2:31147777-31147796 None:intergenic 25.0%
! ATTTATTATGCATACAGTTC+AGG + chr1.2:31147730-31147749 MS.gene41325:intron 25.0%
! CAGATTAAAACAATGAGATA+TGG - chr1.2:31147327-31147346 None:intergenic 25.0%
! CGATCAAATCAAATATGATA+TGG + chr1.2:31144479-31144498 MS.gene41325:intron 25.0%
! CTATGTATTGCTTATCATAA+CGG + chr1.2:31147984-31148003 MS.gene41325:CDS 25.0%
! GAAAAAAACATCAACTATAC+GGG + chr1.2:31145516-31145535 MS.gene41325:intron 25.0%
! GAAATTGAGTTTATTAGAGA+AGG - chr1.2:31147464-31147483 None:intergenic 25.0%
! GAATCAGAAATGTAATATCA+GGG - chr1.2:31144687-31144706 None:intergenic 25.0%
! GAGTAATCCATATATAAACT+TGG - chr1.2:31146397-31146416 None:intergenic 25.0%
! GTCAGTTGTTCTATTAATTA+AGG + chr1.2:31146935-31146954 MS.gene41325:intron 25.0%
! TAGTAGTCAAATAAATCAAG+GGG + chr1.2:31145997-31146016 MS.gene41325:CDS 25.0%
! TATAATTTCCCTATGTGTTT+AGG + chr1.2:31147816-31147835 MS.gene41325:intron 25.0%
! TCAAAACACTCAATAAGTAA+TGG - chr1.2:31146456-31146475 None:intergenic 25.0%
! TGTATGCAGAATTAAGATTA+TGG + chr1.2:31145856-31145875 MS.gene41325:intron 25.0%
! TGTTACACCAAGTTTATATA+TGG + chr1.2:31146387-31146406 MS.gene41325:intron 25.0%
! TTTATTATGCATACAGTTCA+GGG + chr1.2:31147731-31147750 MS.gene41325:intron 25.0%
!! AGATAACAAAGCATACTTTT+TGG - chr1.2:31148282-31148301 None:intergenic 25.0%
!! AGTCAGAATAATTTTAGATG+GGG + chr1.2:31145451-31145470 MS.gene41325:intron 25.0%
!! CAGTCAGAATAATTTTAGAT+GGG + chr1.2:31145450-31145469 MS.gene41325:intron 25.0%
!! CATTTGATTGGTTATTCTTA+AGG - chr1.2:31148082-31148101 None:intergenic 25.0%
!! CTATTTAAAATGACCTGAAA+TGG + chr1.2:31144995-31145014 MS.gene41325:intron 25.0%
!! GTTATTATGGATCATAGTTT+TGG + chr1.2:31147553-31147572 MS.gene41325:intron 25.0%
!! TAACATTTTATGATTAACCG+AGG + chr1.2:31145401-31145420 MS.gene41325:intron 25.0%
!! TAATCCATTATCACTGTTTT+TGG + chr1.2:31143941-31143960 MS.gene41325:intron 25.0%
!! TCAGTCAGAATAATTTTAGA+TGG + chr1.2:31145449-31145468 MS.gene41325:intron 25.0%
!! TGAATTCTTTTTCCTGAAAA+GGG + chr1.2:31144523-31144542 MS.gene41325:intron 25.0%
!! TTAATTTTCTCTATCCATTC+CGG - chr1.2:31145159-31145178 None:intergenic 25.0%
!! TTCTTTATTATAGGTTCTGA+AGG + chr1.2:31146801-31146820 MS.gene41325:intron 25.0%
!! TTTAATTTCTTTCTCTATGC+AGG + chr1.2:31146425-31146444 MS.gene41325:intron 25.0%
!! TTTATTGACTACATATCTAG+TGG + chr1.2:31146868-31146887 MS.gene41325:CDS 25.0%
!! TTTTACAAAATCAATGAAGC+AGG - chr1.2:31144142-31144161 None:intergenic 25.0%
!! TTTTCTAACAAGAATTTAGC+AGG - chr1.2:31145501-31145520 None:intergenic 25.0%
!! TTTTGCATCTATATATAGCA+TGG - chr1.2:31146579-31146598 None:intergenic 25.0%
!!! CTCATTGTTTTAATCTGAAT+GGG + chr1.2:31147330-31147349 MS.gene41325:CDS 25.0%
!!! GATAACAAAGCATACTTTTT+GGG - chr1.2:31148281-31148300 None:intergenic 25.0%
!!! TCTCATTGTTTTAATCTGAA+TGG + chr1.2:31147329-31147348 MS.gene41325:CDS 25.0%
!!! TCTTTATTATAGGTTCTGAA+GGG + chr1.2:31146802-31146821 MS.gene41325:intron 25.0%
!!! TGATTTTTTCAGTTTACTGT+TGG - chr1.2:31146623-31146642 None:intergenic 25.0%
!!! TTTTGAAATTAACCCTTTTC+AGG - chr1.2:31144538-31144557 None:intergenic 25.0%
AAATTGGCAATGAGAAAACA+TGG - chr1.2:31147670-31147689 None:intergenic 30.0%
AAGCTATACCAAGAGAAAAA+AGG + chr1.2:31146658-31146677 MS.gene41325:CDS 30.0%
ACAAGTGATAGAGGTTATTA+TGG + chr1.2:31147540-31147559 MS.gene41325:intron 30.0%
ACCAACTATAAGAATCGATA+AGG - chr1.2:31148184-31148203 None:intergenic 30.0%
ACCTGCCAAAAATACAATAA+CGG - chr1.2:31148671-31148690 None:intergenic 30.0%
ACTCTTGATATCCTTAGAAA+AGG - chr1.2:31146226-31146245 None:intergenic 30.0%
AGAACATATAAGATGAAGCT+AGG - chr1.2:31146138-31146157 None:intergenic 30.0%
ATAACCTCTATCACTTGTAA+TGG - chr1.2:31147538-31147557 None:intergenic 30.0%
ATAACTGGTCCAAATAAAGT+GGG - chr1.2:31147907-31147926 None:intergenic 30.0%
ATAACTTCCGTCTTGAAAAT+AGG - chr1.2:31146271-31146290 None:intergenic 30.0%
ATGAGTATAGATTGTTAGCA+TGG - chr1.2:31148637-31148656 None:intergenic 30.0%
ATGCTAGACTTATGTTACAA+AGG + chr1.2:31147411-31147430 MS.gene41325:intron 30.0%
ATTTATGTAGGCTATTATGG+AGG + chr1.2:31147223-31147242 MS.gene41325:intron 30.0%
CAAACCAAAAACAGTGATAA+TGG - chr1.2:31143948-31143967 None:intergenic 30.0%
CCAACTATAAGAATCGATAA+GGG - chr1.2:31148183-31148202 None:intergenic 30.0%
CTTCATTGGCAAAAATACTT+TGG - chr1.2:31144724-31144743 None:intergenic 30.0%
GAAAGAAAGCAACAAAATGA+GGG - chr1.2:31145299-31145318 None:intergenic 30.0%
GAATACCATAAGTAATTGGA+AGG - chr1.2:31144813-31144832 None:intergenic 30.0%
GAATAGTTTACAAACCTTTG+TGG - chr1.2:31145365-31145384 None:intergenic 30.0%
TCGGTTAAATTCATACCAAA+AGG + chr1.2:31147074-31147093 MS.gene41325:CDS 30.0%
TGAAAGAAAGCAACAAAATG+AGG - chr1.2:31145300-31145319 None:intergenic 30.0%
TGAGAGAATAACATGTACTA+AGG + chr1.2:31148301-31148320 MS.gene41325:intron 30.0%
TGGATTTGAACTAAACTTCT+TGG + chr1.2:31146888-31146907 MS.gene41325:CDS 30.0%
TGTAAAGCGTAAAGATGTTT+AGG - chr1.2:31146547-31146566 None:intergenic 30.0%
TGTGGATCAATATTGTGAAA+AGG + chr1.2:31146834-31146853 MS.gene41325:CDS 30.0%
TTACTTTGTACTTCTCTCAT+GGG - chr1.2:31148418-31148437 None:intergenic 30.0%
TTTACAAAACTAACGAAGCA+CGG - chr1.2:31144010-31144029 None:intergenic 30.0%
! ACTTTAAACTTGATGGTACA+TGG - chr1.2:31148532-31148551 None:intergenic 30.0%
! AGTGCTGTTATATGATGAAA+GGG - chr1.2:31147959-31147978 None:intergenic 30.0%
! CTGAATTCTTTTTCCTGAAA+AGG + chr1.2:31144522-31144541 MS.gene41325:intron 30.0%
! GTCAGAATAATTTTAGATGG+GGG + chr1.2:31145452-31145471 MS.gene41325:intron 30.0%
! TAGTGCTGTTATATGATGAA+AGG - chr1.2:31147960-31147979 None:intergenic 30.0%
!! AACTGTTCCTATTTTCAAGA+CGG + chr1.2:31146261-31146280 MS.gene41325:CDS 30.0%
!! TTGCATTACATCGATTTATC+CGG + chr1.2:31147051-31147070 MS.gene41325:CDS 30.0%
!! TTTTCTAAGGATATCAAGAG+TGG + chr1.2:31146225-31146244 MS.gene41325:CDS 30.0%
!!! ACTATACGGGTATTTTAGTT+TGG + chr1.2:31145529-31145548 MS.gene41325:intron 30.0%
!!! CTCTGTTATTTTTAGGACAA+TGG + chr1.2:31147381-31147400 MS.gene41325:intron 30.0%
!!! TATGGATCATAGTTTTGGAT+CGG + chr1.2:31147558-31147577 MS.gene41325:intron 30.0%
!!! TGTTTTGATTTCAATAGCAG+TGG + chr1.2:31146468-31146487 MS.gene41325:CDS 30.0%
AAAGAAAGGAGATGGCAAAT+TGG + chr1.2:31145092-31145111 MS.gene41325:CDS 35.0%
AAGATCAGATGCTTTAACCA+CGG - chr1.2:31148160-31148179 None:intergenic 35.0%
ACCTTAAGGCTTCAAAACAA+AGG + chr1.2:31145968-31145987 MS.gene41325:CDS 35.0%
AGAACTACCTAGTCAATTTC+TGG + chr1.2:31148723-31148742 MS.gene41325:CDS 35.0%
AGCATGTAACTTACTTGATC+TGG + chr1.2:31144860-31144879 MS.gene41325:CDS 35.0%
AGTTCCATTACAAGTGATAG+AGG + chr1.2:31147531-31147550 MS.gene41325:intron 35.0%
ATCACTCCTAGGATCAATAT+TGG - chr1.2:31147585-31147604 None:intergenic 35.0%
ATGAAAGCCAGAAATTGACT+AGG - chr1.2:31148733-31148752 None:intergenic 35.0%
ATTTGGACCAGTTATCAACA+TGG + chr1.2:31147912-31147931 MS.gene41325:CDS 35.0%
CATAACGAACTGTTTGAATC+CGG + chr1.2:31145137-31145156 MS.gene41325:CDS 35.0%
CCTGCCAAAAATACAATAAC+GGG - chr1.2:31148670-31148689 None:intergenic 35.0%
CTAGACTTATGTTACAAAGG+TGG + chr1.2:31147414-31147433 MS.gene41325:intron 35.0%
CTGAATGATCAAGAATTCCT+TGG + chr1.2:31145632-31145651 MS.gene41325:CDS 35.0%
CTGCCAAAAATACAATAACG+GGG - chr1.2:31148669-31148688 None:intergenic 35.0%
CTTACTTTGTACTTCTCTCA+TGG - chr1.2:31148419-31148438 None:intergenic 35.0%
GAAATTTCAGAGTGATCCTA+TGG + chr1.2:31145056-31145075 MS.gene41325:intron 35.0%
GAAGATCATGGACATTTGAT+TGG - chr1.2:31148094-31148113 None:intergenic 35.0%
GACATTGACACATCATATCA+TGG + chr1.2:31145334-31145353 MS.gene41325:CDS 35.0%
GATAACTGGTCCAAATAAAG+TGG - chr1.2:31147908-31147927 None:intergenic 35.0%
GATGGCAAATTGGAAGAATT+AGG + chr1.2:31145102-31145121 MS.gene41325:CDS 35.0%
GTAAGCTTGATATCTGTCAA+TGG + chr1.2:31147096-31147115 MS.gene41325:intron 35.0%
GTATATGCAAAGAAAGGAGA+TGG + chr1.2:31145084-31145103 MS.gene41325:CDS 35.0%
TAACAGAGAATTTCTCACCT+CGG - chr1.2:31147369-31147388 None:intergenic 35.0%
TAAGGCTTCAAAACAAAGGA+GGG + chr1.2:31145972-31145991 MS.gene41325:CDS 35.0%
TACTTTGTACTTCTCTCATG+GGG - chr1.2:31148417-31148436 None:intergenic 35.0%
TATATATGTCCAGCTTCGAA+TGG + chr1.2:31147006-31147025 MS.gene41325:intron 35.0%
TCCTACAACCTAAACACATA+GGG - chr1.2:31147827-31147846 None:intergenic 35.0%
TCGATGTAATGCAAAGAATC+TGG - chr1.2:31147045-31147064 None:intergenic 35.0%
TGAAAGATAGCAACCATTTC+AGG - chr1.2:31145011-31145030 None:intergenic 35.0%
TGAACTAAACTTCTTGGTTG+CGG + chr1.2:31146894-31146913 MS.gene41325:CDS 35.0%
TGCTGGAAATTAAGACAAAG+TGG - chr1.2:31146322-31146341 None:intergenic 35.0%
TGTCTTAATTTCCAGCAGTT+TGG + chr1.2:31146325-31146344 MS.gene41325:CDS 35.0%
TTAAGGCTTCAAAACAAAGG+AGG + chr1.2:31145971-31145990 MS.gene41325:CDS 35.0%
TTACTTTACTTCCAAACTGC+TGG - chr1.2:31146339-31146358 None:intergenic 35.0%
TTAGATGGGGGTAAAATACA+TGG + chr1.2:31145464-31145483 MS.gene41325:intron 35.0%
TTCATGATTAAGGAGTGAGA+GGG - chr1.2:31147767-31147786 None:intergenic 35.0%
TTCCTACAACCTAAACACAT+AGG - chr1.2:31147828-31147847 None:intergenic 35.0%
TTGGTATGAATTTAACCGAC+CGG - chr1.2:31147073-31147092 None:intergenic 35.0%
! CAGATATCAAGCTTACCTTT+TGG - chr1.2:31147092-31147111 None:intergenic 35.0%
! CTTGTAATGGAACTCATAGT+AGG - chr1.2:31147525-31147544 None:intergenic 35.0%
! GAACCCCGTTATTGTATTTT+TGG + chr1.2:31148663-31148682 MS.gene41325:intron 35.0%
! TCGATTCTTATAGTTGGTGT+TGG + chr1.2:31148186-31148205 MS.gene41325:CDS 35.0%
! TCTCTTGGTATAGCTTTTCA+AGG - chr1.2:31146654-31146673 None:intergenic 35.0%
! TGTAGGAATTGAAGGCATAA+TGG + chr1.2:31147840-31147859 MS.gene41325:CDS 35.0%
! TTTGGCCTTCCAATTACTTA+TGG + chr1.2:31144805-31144824 MS.gene41325:intron 35.0%
!! ACTTTTTGGGAGAAATGCTA+AGG - chr1.2:31148268-31148287 None:intergenic 35.0%
!! ATTACATCGATTTATCCGGT+CGG + chr1.2:31147055-31147074 MS.gene41325:CDS 35.0%
!! CCCTTATCGATTCTTATAGT+TGG + chr1.2:31148180-31148199 MS.gene41325:CDS 35.0%
!! GTTTAGGTTGTAGGAATTGA+AGG + chr1.2:31147832-31147851 MS.gene41325:intron 35.0%
!! TGGTTTGTTTGTATTGTGTC+TGG + chr1.2:31144105-31144124 MS.gene41325:intron 35.0%
!!! AATTTGCGCCTTTTTTCTCT+TGG - chr1.2:31146669-31146688 None:intergenic 35.0%
!!! GTTATTGTATTTTTGGCAGG+TGG + chr1.2:31148670-31148689 MS.gene41325:intron 35.0%
!!! TCCTTTGTTTTGAAGCCTTA+AGG - chr1.2:31145972-31145991 None:intergenic 35.0%
!!! TGAGTTTTGGTTGCTAAGTT+TGG + chr1.2:31144787-31144806 MS.gene41325:intron 35.0%
AAAGCAACAAAATGAGGGAG+AGG - chr1.2:31145294-31145313 None:intergenic 40.0%
AATCGTACATACCTCGACAT+TGG - chr1.2:31143919-31143938 None:intergenic 40.0%
AATTCTGCATACAGCAGAGT+TGG - chr1.2:31145849-31145868 None:intergenic 40.0%
ACAATGAGATATGGTACCTC+CGG - chr1.2:31147318-31147337 None:intergenic 40.0%
ACCTCGACATTGGTAAACAA+TGG - chr1.2:31143909-31143928 None:intergenic 40.0%
AGTGGCAATCATGCACTTAT+CGG + chr1.2:31146486-31146505 MS.gene41325:CDS 40.0%
ATATCAAGAGTGGTTGAGAG+TGG + chr1.2:31146235-31146254 MS.gene41325:CDS 40.0%
ATATCATGGTGTTCCCACAA+AGG + chr1.2:31145348-31145367 MS.gene41325:CDS 40.0%
ATCCATCTATGAAGCATGGA+CGG - chr1.2:31144276-31144295 None:intergenic 40.0%
ATCGGACCAATATTGATCCT+AGG + chr1.2:31147576-31147595 MS.gene41325:intron 40.0%
ATGACGTGTTTGACATGTGT+TGG + chr1.2:31144085-31144104 MS.gene41325:intron 40.0%
ATGTAGGCTATTATGGAGGT+TGG + chr1.2:31147227-31147246 MS.gene41325:intron 40.0%
CAGACATCATAGACACAACA+CGG - chr1.2:31143984-31144003 None:intergenic 40.0%
CAGATACTGGATGCTGATAA+TGG + chr1.2:31148334-31148353 MS.gene41325:intron 40.0%
CTATCAGGACCCACTTTATT+TGG + chr1.2:31147895-31147914 MS.gene41325:CDS 40.0%
GCTGTGGTATATGCAAAGAA+AGG + chr1.2:31145078-31145097 MS.gene41325:CDS 40.0%
GTTCATGATTAAGGAGTGAG+AGG - chr1.2:31147768-31147787 None:intergenic 40.0%
TACTCCATTTCATCACTCCT+AGG - chr1.2:31147596-31147615 None:intergenic 40.0%
TATCAACATGGCTGCACAAA+TGG + chr1.2:31147924-31147943 MS.gene41325:CDS 40.0%
TCACATCCATCTATGAAGCA+TGG - chr1.2:31144280-31144299 None:intergenic 40.0%
TGAAGGATAGCTTACACAAG+TGG - chr1.2:31145210-31145229 None:intergenic 40.0%
TGATAAGCAGTTTCCTGCTT+GGG + chr1.2:31147274-31147293 MS.gene41325:CDS 40.0%
TGATCAAGAATTCCTTGGAG+AGG + chr1.2:31145637-31145656 MS.gene41325:CDS 40.0%
TGATCCTAGGAGTGATGAAA+TGG + chr1.2:31147589-31147608 MS.gene41325:intron 40.0%
TGATCTGGACATTGCATCAA+AGG + chr1.2:31144875-31144894 MS.gene41325:CDS 40.0%
TGTTATCCAAGTGAGAGCAA+CGG - chr1.2:31146081-31146100 None:intergenic 40.0%
TTGTGTGCGTGTGTATACTA+TGG + chr1.2:31145913-31145932 MS.gene41325:intron 40.0%
TTTGCATATACCACAGCCAT+AGG - chr1.2:31145075-31145094 None:intergenic 40.0%
! AGACAAAGTGGTCTCCATTT+TGG - chr1.2:31146310-31146329 None:intergenic 40.0%
! AGGAATTGAAGGCATAATGG+AGG + chr1.2:31147843-31147862 MS.gene41325:CDS 40.0%
! AGTTGTCGAAGTGTGAGTTT+TGG + chr1.2:31144774-31144793 MS.gene41325:intron 40.0%
! ATTGAATAGAGGGTGCATGA+GGG - chr1.2:31148792-31148811 None:intergenic 40.0%
! CTTATGATCAGAGGTGTGTT+CGG + chr1.2:31144205-31144224 MS.gene41325:intron 40.0%
! GTCATCGTGATTTTTCTTGC+AGG + chr1.2:31146198-31146217 MS.gene41325:intron 40.0%
! TATTGAATAGAGGGTGCATG+AGG - chr1.2:31148793-31148812 None:intergenic 40.0%
! TCTTGCAGGATCCTTTTCTA+AGG + chr1.2:31146212-31146231 MS.gene41325:intron 40.0%
! TTGTTGGTTGTTGCAGATTC+AGG - chr1.2:31143843-31143862 None:intergenic 40.0%
!! CAGTAGAACTTTTCAAGCGA+CGG - chr1.2:31148360-31148379 None:intergenic 40.0%
!! TCCCTATGTGTTTAGGTTGT+AGG + chr1.2:31147823-31147842 MS.gene41325:intron 40.0%
!!! CCCGTTATTGTATTTTTGGC+AGG + chr1.2:31148667-31148686 MS.gene41325:intron 40.0%
AAAGCAGCGAAAGAAGCAGT+AGG + chr1.2:31143807-31143826 MS.gene41325:CDS 45.0%
AACTGTCTCCTCAGCATGAA+TGG - chr1.2:31146029-31146048 None:intergenic 45.0%
ACACCTCTGATCATAAGCGT+CGG - chr1.2:31144202-31144221 None:intergenic 45.0%
ACACGGACTCTAACATGTGT+TGG - chr1.2:31144234-31144253 None:intergenic 45.0%
AGATTGTGACCAAACCAAGC+AGG + chr1.2:31145939-31145958 MS.gene41325:intron 45.0%
AGCGGTGTAGAAGAAATCGA+CGG - chr1.2:31143874-31143893 None:intergenic 45.0%
CAAGCAGGAGCTTAACCTTA+AGG + chr1.2:31145954-31145973 MS.gene41325:CDS 45.0%
CAATGAGATATGGTACCTCC+GGG - chr1.2:31147317-31147336 None:intergenic 45.0%
CAATGGCTGAAAACCTTGAG+CGG - chr1.2:31143892-31143911 None:intergenic 45.0%
CGAACTGTTTGAATCCGGAA+TGG + chr1.2:31145142-31145161 MS.gene41325:CDS 45.0%
CGTCGCTTGAAAAGTTCTAC+TGG + chr1.2:31148358-31148377 MS.gene41325:CDS 45.0%
CTGATAAGCAGTTTCCTGCT+TGG + chr1.2:31147273-31147292 MS.gene41325:CDS 45.0%
CTTAAGGTTAAGCTCCTGCT+TGG - chr1.2:31145956-31145975 None:intergenic 45.0%
GATAAGCAGTTTCCTGCTTG+GGG + chr1.2:31147275-31147294 MS.gene41325:CDS 45.0%
GATTTCTTCTACACCGCTCA+AGG + chr1.2:31143876-31143895 MS.gene41325:CDS 45.0%
GCCATTGTTTACCAATGTCG+AGG + chr1.2:31143905-31143924 MS.gene41325:CDS 45.0%
GGATTTGGAGGAAAGATACC+CGG + chr1.2:31147296-31147315 MS.gene41325:CDS 45.0%
GGCAATTACCATTCATGCTG+AGG + chr1.2:31146018-31146037 MS.gene41325:CDS 45.0%
GTATACACACGCACACAAAC+AGG - chr1.2:31145911-31145930 None:intergenic 45.0%
GTGGCAATCATGCACTTATC+GGG + chr1.2:31146487-31146506 MS.gene41325:CDS 45.0%
TACAGGTAGAACTCATGCCT+CGG - chr1.2:31145421-31145440 None:intergenic 45.0%
TATCTTCCGTTGCTCTCACT+TGG + chr1.2:31146072-31146091 MS.gene41325:CDS 45.0%
TCAAGAAACCATAGATGCCG+TGG + chr1.2:31148140-31148159 MS.gene41325:CDS 45.0%
TCTGAAGGGTCAACTCTTTG+TGG + chr1.2:31146816-31146835 MS.gene41325:CDS 45.0%
TCTGACTGAGAAAGCAGTAC+AGG - chr1.2:31145438-31145457 None:intergenic 45.0%
TCTGTAACAACTCCATCCTG+CGG - chr1.2:31148117-31148136 None:intergenic 45.0%
TGCAAAGAATCTGGCTGTTG+AGG - chr1.2:31147036-31147055 None:intergenic 45.0%
TGCTTTAACCACGGCATCTA+TGG - chr1.2:31148151-31148170 None:intergenic 45.0%
TTAGAGTCCGTGTTTGTGAC+TGG + chr1.2:31144241-31144260 MS.gene41325:intron 45.0%
TTGGTTGCGGTAGATTTCAC+TGG + chr1.2:31146907-31146926 MS.gene41325:CDS 45.0%
! ACGTCATCGATCAGAAGTGT+CGG - chr1.2:31144072-31144091 None:intergenic 45.0%
! CTCTGTTGTGCAAGCTCTTT+TGG + chr1.2:31148699-31148718 MS.gene41325:CDS 45.0%
! GAAGGCATAATGGAGGCTTA+TGG + chr1.2:31147850-31147869 MS.gene41325:CDS 45.0%
! GGCTAGTTGCACTTTATCAG+AGG + chr1.2:31145658-31145677 MS.gene41325:CDS 45.0%
!! AAGCGCTGATTTCAAGAGCA+TGG + chr1.2:31148209-31148228 MS.gene41325:CDS 45.0%
!! TGTGCAGCCATGTTGATAAC+TGG - chr1.2:31147922-31147941 None:intergenic 45.0%
!! TAAATAAATATTTCTTTAAT+TGG - chr1.2:31144595-31144614 None:intergenic 5.0%
AATGTCCATGATCTTCCCGC+AGG + chr1.2:31148098-31148117 MS.gene41325:intron 50.0%
ATCGACGGCGTCATTGTTGT+TGG - chr1.2:31143859-31143878 None:intergenic 50.0%
CACACGCAATGGACAAGAGA+AGG + chr1.2:31146702-31146721 MS.gene41325:CDS 50.0%
CAGTTTCCTGCTTGGGGATT+TGG + chr1.2:31147281-31147300 MS.gene41325:CDS 50.0%
CTGTAACAACTCCATCCTGC+GGG - chr1.2:31148116-31148135 None:intergenic 50.0%
CTTCTCTTGTCCATTGCGTG+TGG - chr1.2:31146704-31146723 None:intergenic 50.0%
GGTTAAGCTCCTGCTTGGTT+TGG - chr1.2:31145951-31145970 None:intergenic 50.0%
GTCCGTCCATGCTTCATAGA+TGG + chr1.2:31144271-31144290 MS.gene41325:intron 50.0%
TCAAGAGTGGTTGAGAGTGG+AGG + chr1.2:31146238-31146257 MS.gene41325:CDS 50.0%
TCAGAGTGATCCTATGGCTG+TGG + chr1.2:31145062-31145081 MS.gene41325:intron 50.0%
TCTTGTCCATTGCGTGTGGA+TGG - chr1.2:31146700-31146719 None:intergenic 50.0%
TGAGGACTTCCATTCGAAGC+TGG - chr1.2:31147018-31147037 None:intergenic 50.0%
TGAGGGAAATGGGAAACGAG+TGG - chr1.2:31148775-31148794 None:intergenic 50.0%
TTACGCAGTGTCACGCTATC+AGG + chr1.2:31147880-31147899 MS.gene41325:CDS 50.0%
TTTCCTCCAAATCCCCAAGC+AGG - chr1.2:31147290-31147309 None:intergenic 50.0%
TTTCCTGCTTGGGGATTTGG+AGG + chr1.2:31147284-31147303 MS.gene41325:CDS 50.0%
TTTCTCACCTCGGAGCTAGT+TGG - chr1.2:31147359-31147378 None:intergenic 50.0%
TTTGGAGGAAAGATACCCGG+AGG + chr1.2:31147299-31147318 MS.gene41325:CDS 50.0%
! AAGTGCAACTAGCCTCTCCA+AGG - chr1.2:31145652-31145671 None:intergenic 50.0%
! AGAGGGTGCATGAGGGAAAT+GGG - chr1.2:31148785-31148804 None:intergenic 50.0%
! TAGAGGGTGCATGAGGGAAA+TGG - chr1.2:31148786-31148805 None:intergenic 50.0%
!! CGCTGATTTCAAGAGCATGG+AGG + chr1.2:31148212-31148231 MS.gene41325:CDS 50.0%
CGCAGACACACACATGAAGC+TGG + chr1.2:31145801-31145820 MS.gene41325:intron 55.0%
GAGTCCGTGTTTGTGACTGG+TGG + chr1.2:31144244-31144263 MS.gene41325:intron 55.0%
GCAGCGAAAGAAGCAGTAGG+AGG + chr1.2:31143810-31143829 MS.gene41325:CDS 55.0%
GCGACCACCAGTCACAAACA+CGG - chr1.2:31144251-31144270 None:intergenic 55.0%
GTCATGCCATCCACACGCAA+TGG + chr1.2:31146691-31146710 MS.gene41325:CDS 55.0%
TCCATCCTGCGGGAAGATCA+TGG - chr1.2:31148106-31148125 None:intergenic 55.0%
TCCATGATCTTCCCGCAGGA+TGG + chr1.2:31148102-31148121 MS.gene41325:intron 55.0%
! GCACCGACGCTTATGATCAG+AGG + chr1.2:31144196-31144215 MS.gene41325:intron 55.0%
GGCTGCACAAATGGCTGCAG+AGG + chr1.2:31147933-31147952 MS.gene41325:CDS 60.0%
TGGGAGTCCAACTAGCTCCG+AGG + chr1.2:31147349-31147368 MS.gene41325:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 31143804 31148813 31143804 ID=MS.gene41325
chr1.2 mRNA 31143804 31148813 31143804 ID=MS.gene41325.t1;Parent=MS.gene41325
chr1.2 exon 31143804 31143926 31143804 ID=MS.gene41325.t1.exon1;Parent=MS.gene41325.t1
chr1.2 CDS 31143804 31143926 31143804 ID=cds.MS.gene41325.t1;Parent=MS.gene41325.t1
chr1.2 exon 31144849 31144896 31144849 ID=MS.gene41325.t1.exon2;Parent=MS.gene41325.t1
chr1.2 CDS 31144849 31144896 31144849 ID=cds.MS.gene41325.t1;Parent=MS.gene41325.t1
chr1.2 exon 31145066 31145214 31145066 ID=MS.gene41325.t1.exon3;Parent=MS.gene41325.t1
chr1.2 CDS 31145066 31145214 31145066 ID=cds.MS.gene41325.t1;Parent=MS.gene41325.t1
chr1.2 exon 31145321 31145369 31145321 ID=MS.gene41325.t1.exon4;Parent=MS.gene41325.t1
chr1.2 CDS 31145321 31145369 31145321 ID=cds.MS.gene41325.t1;Parent=MS.gene41325.t1
chr1.2 exon 31145623 31145679 31145623 ID=MS.gene41325.t1.exon5;Parent=MS.gene41325.t1
chr1.2 CDS 31145623 31145679 31145623 ID=cds.MS.gene41325.t1;Parent=MS.gene41325.t1
chr1.2 exon 31145941 31146120 31145941 ID=MS.gene41325.t1.exon6;Parent=MS.gene41325.t1
chr1.2 CDS 31145941 31146120 31145941 ID=cds.MS.gene41325.t1;Parent=MS.gene41325.t1
chr1.2 exon 31146220 31146354 31146220 ID=MS.gene41325.t1.exon7;Parent=MS.gene41325.t1
chr1.2 CDS 31146220 31146354 31146220 ID=cds.MS.gene41325.t1;Parent=MS.gene41325.t1
chr1.2 exon 31146447 31146508 31146447 ID=MS.gene41325.t1.exon8;Parent=MS.gene41325.t1
chr1.2 CDS 31146447 31146508 31146447 ID=cds.MS.gene41325.t1;Parent=MS.gene41325.t1
chr1.2 exon 31146627 31146723 31146627 ID=MS.gene41325.t1.exon9;Parent=MS.gene41325.t1
chr1.2 CDS 31146627 31146723 31146627 ID=cds.MS.gene41325.t1;Parent=MS.gene41325.t1
chr1.2 exon 31146814 31146928 31146814 ID=MS.gene41325.t1.exon10;Parent=MS.gene41325.t1
chr1.2 CDS 31146814 31146928 31146814 ID=cds.MS.gene41325.t1;Parent=MS.gene41325.t1
chr1.2 exon 31147019 31147095 31147019 ID=MS.gene41325.t1.exon11;Parent=MS.gene41325.t1
chr1.2 CDS 31147019 31147095 31147019 ID=cds.MS.gene41325.t1;Parent=MS.gene41325.t1
chr1.2 exon 31147233 31147370 31147233 ID=MS.gene41325.t1.exon12;Parent=MS.gene41325.t1
chr1.2 CDS 31147233 31147370 31147233 ID=cds.MS.gene41325.t1;Parent=MS.gene41325.t1
chr1.2 exon 31147838 31148005 31147838 ID=MS.gene41325.t1.exon13;Parent=MS.gene41325.t1
chr1.2 CDS 31147838 31148005 31147838 ID=cds.MS.gene41325.t1;Parent=MS.gene41325.t1
chr1.2 exon 31148120 31148233 31148120 ID=MS.gene41325.t1.exon14;Parent=MS.gene41325.t1
chr1.2 CDS 31148120 31148233 31148120 ID=cds.MS.gene41325.t1;Parent=MS.gene41325.t1
chr1.2 exon 31148337 31148433 31148337 ID=MS.gene41325.t1.exon15;Parent=MS.gene41325.t1
chr1.2 CDS 31148337 31148433 31148337 ID=cds.MS.gene41325.t1;Parent=MS.gene41325.t1
chr1.2 exon 31148689 31148813 31148689 ID=MS.gene41325.t1.exon16;Parent=MS.gene41325.t1
chr1.2 CDS 31148689 31148813 31148689 ID=cds.MS.gene41325.t1;Parent=MS.gene41325.t1
Gene Sequence

>MS.gene41325

ATGAAAGCAGCGAAAGAAGCAGTAGGAGGTGTTGCTCCTGAATCTGCAACAACCAACAACAATGACGCCGTCGATTTCTTCTACACCGCTCAAGGTTTTCAGCCATTGTTTACCAATGTCGAGGTATGTACGATTTATAATCCATTATCACTGTTTTTGGTTTGTCAGTGTCTGTGTCCGTGTTGTGTCTATGATGTCTGTATCCGTGCTTCGTTAGTTTTGTAAAATTGATTTGAAGATGGTTTGAATGTGAAACTCTGTAACACCGACACTTCTGATCGATGACGTGTTTGACATGTGTTGGTTTGTTTGTATTGTGTCTGGTGTCTGTGTCTCCTGCTTCATTGATTTTGTAAAATTAATTTTAAAGATAGCTTGAATGTGAAGTTGTAGCACCGACGCTTATGATCAGAGGTGTGTTCGGTGTCCAACACATGTTAGAGTCCGTGTTTGTGACTGGTGGTCGCGTCCGTCCATGCTTCATAGATGGATGTGAAGTAGATTATGTCATAACATGTTGAAGAATCCATTTATTGTAAAAAAATCTATAAATTCTAACTTTAAATTAGAATAATTCTATACACAAAATCAATTTCAATCTACATCACCCAAACATGTCATAATCAATTTTTATAACTTTGGAATTAATTTGAGTTTGCGCAATGCTAATTGTTTCGATCAAATCAAATATGATATGGCTGAAATATATTATTTGGTTCTGAATTCTTTTTCCTGAAAAGGGTTAATTTCAAAACATTATTTATTTAATTTTTTTTAATAATCAGTGTCCAATTAAAGAAATATTTATTTAATTTTTTTTAATAATCTTAATAAATTAAATTAAGTTTTACATAAACATGTATTCAATGTTATGTTTAGTCCCTGATATTACATTTCTGATTCTGCTTCTAGTTTGACCAAAGTATTTTTGCCAATGAAGAATTAGTTTTGAAAATTTCTTTGTTTGCTAAGTTGTCGAAGTGTGAGTTTTGGTTGCTAAGTTTGGCCTTCCAATTACTTATGGTATTCAACTCTTTTGCTGCAGTTATCTCTTTCAGCATGTAACTTACTTGATCTGGACATTGCATCAAAGGTAATATTCTTATACATAAGAATGCATATGCTATTTATTTATTTTTGATTGCAGAATGCATATGCTATTTATTTATTTTTGATTGCAGAATGCATATGCTATTTAAAATGACCTGAAATGGTTGCTATCTTTCAGCATGTAACTTTTTTTTTTTTTTTTGAAATTTCAGAGTGATCCTATGGCTGTGGTATATGCAAAGAAAGGAGATGGCAAATTGGAAGAATTAGGACGCACTGAAGTCATAACGAACTGTTTGAATCCGGAATGGATAGAGAAAATTAATATTGCATTTCATTTCGAGATTGTGCAACCACTTGTGTAAGCTATCCTTCATTTCGAAAATTAATATAGCAATGAGATTATGAGGCTTATTTCTGATTTGTTTCACTAACTTCCTCTCCCTCATTTTGTTGCTTTCTTTCAGATTTCATGTGTATGACATTGACACATCATATCATGGTGTTCCCACAAAGGTTTGTAAACTATTCATATAAAAAATCTATCTAACATTTTATGATTAACCGAGGCATGAGTTCTACCTGTACTGCTTTCTCAGTCAGAATAATTTTAGATGGGGGTAAAATACATGGCTAACGTATAGCCTGCTAAATTCTTGTTAGAAAAAAACATCAACTATACGGGTATTTTAGTTTGGAATAATTTTAGATGGTGAAGTTTATATATTTGAAAAATGAAAGTTTGAATATGTTATGTTACTTCATGCAGACACTAAAACTGAATGATCAAGAATTCCTTGGAGAGGCTAGTTGCACTTTATCAGAGGTCAGTAACTCAGTATAATATGTCATACACTGCAGTATTTCATTTGTTTGTAATAAATCTGTCAGTAGATGACAAACACACATTTCAGAAACACACACACACGCGCGCGCGCGCACGTGCGCGCAGACACACACATGAAGCTGGTTAGCTTAATTATAGCTGCTTGCCAACTCTGCTGTATGCAGAATTAAGATTATGGTCTATGGACTTTGTGTGACATTTGTCTCTCCTGTTTGTGTGCGTGTGTATACTATGGAACAGATTGTGACCAAACCAAGCAGGAGCTTAACCTTAAGGCTTCAAAACAAAGGAGGGAATAGTAGTCAAATAAATCAAGGGGCAATTACCATTCATGCTGAGGAGACAGTTGCTGCAAAGAATGCTGTTGATATTATCTTCCGTTGCTCTCACTTGGATAACAAAGACATTTTTTCTAAAAGTGTACAAATTCAATACCTAGCTTCATCTTATATGTTCTATATTTAAGTGCATATTTAGTTTTAACATTCTGAAAACTTGTCATCGTGATTTTTCTTGCAGGATCCTTTTCTAAGGATATCAAGAGTGGTTGAGAGTGGAGGAACTGTTCCTATTTTCAAGACGGAAGTTATAGACGACAATTTAAATCCAAAATGGAGACCACTTTGTCTTAATTTCCAGCAGTTTGGAAGTAAAGTAAGCGTTATCGTTGTGCACAAAATGTCTGATGTTACACCAAGTTTATATATGGATTACTCTGACATTTTTTAATTTCTTTCTCTATGCAGGATACTCCATTACTTATTGAGTGTTTTGATTTCAATAGCAGTGGCAATCATGCACTTATCGGGTAATTTCAAATTATATAGTTTTATTTTCGTTTAGCCTAAACATCTTTACGCTTTACATTTTCTTGTCCATGCTATATATAGATGCAAAATACTGACATCAAAGTTTGTTGCCAACAGTAAACTGAAAAAATCAGTAGCAGACCTTGAAAAGCTATACCAAGAGAAAAAAGGCGCAAATTTTGTCATGCCATCCACACGCAATGGACAAGAGAAGGTGTTCATTAATCTCTGCAATCGAATTCAAGTTATATTTTGGATCTAATCTCTGCTTAGCCTTACACTTGATTAAATTTCTTTATTATAGGTTCTGAAGGGTCAACTCTTTGTGGATCAATATTGTGAAAAGGAACAATTCAGCTTTATTGACTACATATCTAGTGGATTTGAACTAAACTTCTTGGTTGCGGTAGATTTCACTGGTTAGTGTCAGTTGTTCTATTAATTAAGGTCAATAAATAGTACTAATTTCATATTCGTAGTTTGTTAATAGCTTCAATATATATGTCCAGCTTCGAATGGAAGTCCTCAACAGCCAGATTCTTTGCATTACATCGATTTATCCGGTCGGTTAAATTCATACCAAAAGGTAAGCTTGATATCTGTCAATGGAAGATTTCAAATTTTTTAATCATCAACTTGTGAAACATAACAATAGCATTCAAGACTTCACTATGATCCTACCTTTTTTTAACTTCTTTTTGGTTCTGAATAAAATTTATGTAGGCTATTATGGAGGTTGGAGAAGTTATTCAGTTCTATGATTCTGATAAGCAGTTTCCTGCTTGGGGATTTGGAGGAAAGATACCCGGAGGTACCATATCTCATTGTTTTAATCTGAATGGGAGTCCAACTAGCTCCGAGGTGAGAAATTCTCTGTTATTTTTAGGACAATGGTTCTTTGATGCTAGACTTATGTTACAAAGGTGGAAAACTATTGTTAATTATTATTTTCCTTCTCTAATAAACTCAATTTCATCTTATTCATCAACTCTAATGAAAATAACATTCATATCCTACTATGAGTTCCATTACAAGTGATAGAGGTTATTATGGATCATAGTTTTGGATCGGACCAATATTGATCCTAGGAGTGATGAAATGGAGTAAATGAGTTTTTAAAGTTTGCAGTAAAAAAGCTTCGTAAGAAACTTATATCACCATGTTTTCTCATTGCCAATTTTCATATCAACTCTTTAATATTAATACAATAAGTAGTAACAATTTATTATGCATACAGTTCAGGGAAAGACTCTTCCCTCTCACTCCTTAATCATGAACTTGATACATTCTATTAAATAAATTAAGATATAATTTCCCTATGTGTTTAGGTTGTAGGAATTGAAGGCATAATGGAGGCTTATGGCAGTGCTTTACGCAGTGTCACGCTATCAGGACCCACTTTATTTGGACCAGTTATCAACATGGCTGCACAAATGGCTGCAGAGGCCCTTTCATCATATAACAGCACTAAGTACTATGTATTGCTTATCATAACGGTGAGAAATCCGACGATTATAATTGATTTACAGTGTGCAAAAACTTTACACTAAAAACACTTATCAATTAAATCCTTAAGAATAACCAATCAAATGTCCATGATCTTCCCGCAGGATGGAGTTGTTACAGATCTTCAAGAAACCATAGATGCCGTGGTTAAAGCATCTGATCTTCCCTTATCGATTCTTATAGTTGGTGTTGGAAGCGCTGATTTCAAGAGCATGGAGGTCTACTTATATCCTTCTCTAAATTTCTTTTCCTTAGCATTTCTCCCAAAAAGTATGCTTTGTTATCTGAGAGAATAACATGTACTAAGGTTTATTATTACAGATACTGGATGCTGATAATGGCCGTCGCTTGAAAAGTTCTACTGGTCGTCTAGCTACACGAGATATAGTGCAATTTGTCCCCATGAGAGAAGTACAAAGTAAGTACTAACTAGTAGTTTCTTCTCTAGTTTAACTTGTTAGTAGTTTTTCAATTCTTGTAACTATTTTGAGTCTTTGTTTTATTGACACAAATCCATGTACCATCAAGTTTAAAGTTGAAAATACAAATATAACACTTATTACTCTTAAATTTTTGGTGTAATATATACTTAAAAAACAAGTTTTCATTTATTTCTTTCCATGCTAACAATCTATACTCATTTAATTGAACCCCGTTATTGTATTTTTGGCAGGTGGACAAATCTCTGTTGTGCAAGCTCTTTTGGAAGAACTACCTAGTCAATTTCTGGCTTTCATGAGAAGTAGAGATATCAAACCACTCGTTTCCCATTTCCCTCATGCACCCTCTATTCAATAG
Protein sequence

>MS.gene41325.t1

MKAAKEAVGGVAPESATTNNNDAVDFFYTAQGFQPLFTNVELSLSACNLLDLDIASKSDPMAVVYAKKGDGKLEELGRTEVITNCLNPEWIEKINIAFHFEIVQPLVFHVYDIDTSYHGVPTKTLKLNDQEFLGEASCTLSEIVTKPSRSLTLRLQNKGGNSSQINQGAITIHAEETVAAKNAVDIIFRCSHLDNKDIFSKSDPFLRISRVVESGGTVPIFKTEVIDDNLNPKWRPLCLNFQQFGSKDTPLLIECFDFNSSGNHALIGKLKKSVADLEKLYQEKKGANFVMPSTRNGQEKVLKGQLFVDQYCEKEQFSFIDYISSGFELNFLVAVDFTASNGSPQQPDSLHYIDLSGRLNSYQKAIMEVGEVIQFYDSDKQFPAWGFGGKIPGGTISHCFNLNGSPTSSEVVGIEGIMEAYGSALRSVTLSGPTLFGPVINMAAQMAAEALSSYNSTKYYVLLIITDGVVTDLQETIDAVVKASDLPLSILIVGVGSADFKSMEILDADNGRRLKSSTGRLATRDIVQFVPMREVQSGQISVVQALLEELPSQFLAFMRSRDIKPLVSHFPHAPSIQ