AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41483

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41483.t1 MTR_3g467270 93.629 361 15 1 6 366 17 369 0.0 694
MS.gene41483.t1 MTR_4g018820 77.222 360 63 2 6 365 18 358 0.0 563
MS.gene41483.t1 MTR_8g076900 70.959 365 90 3 1 365 13 361 0.0 529
MS.gene41483.t1 MTR_8g077040 68.579 366 107 1 1 366 13 370 0.0 528
MS.gene41483.t1 MTR_5g020940 65.301 366 118 2 1 365 23 380 0.0 508
MS.gene41483.t1 MTR_6g056070 64.543 361 106 3 6 366 19 357 3.26e-164 463
MS.gene41483.t1 MTR_8g020690 60.274 365 125 3 2 365 14 359 2.49e-157 446
MS.gene41483.t1 MTR_8g020700 58.356 365 129 4 2 365 14 356 8.35e-150 427
MS.gene41483.t1 MTR_8g076900 72.881 236 64 0 1 236 13 248 3.26e-126 363
MS.gene41483.t1 MTR_8g020700 62.249 249 90 3 2 249 14 259 6.18e-108 317
MS.gene41483.t1 MTR_3g117060 42.318 371 191 6 2 365 14 368 2.91e-99 299
MS.gene41483.t1 MTR_1g022465 41.316 380 191 8 2 365 14 377 1.32e-89 274
MS.gene41483.t1 MTR_1g022455 41.192 369 186 8 13 365 25 378 2.87e-88 271
MS.gene41483.t1 MTR_3g467560 39.459 370 199 6 1 364 37 387 7.08e-85 263
MS.gene41483.t1 MTR_8g077030 63.592 206 53 2 2 207 14 197 1.50e-79 253
MS.gene41483.t1 MTR_8g077030 68.000 50 14 2 307 354 220 269 3.60e-12 67.8
MS.gene41483.t1 MTR_7g084620 37.500 376 202 8 1 366 13 365 1.97e-79 248
MS.gene41483.t1 MTR_5g046110 36.134 357 200 4 1 351 73 407 5.91e-78 246
MS.gene41483.t1 MTR_7g084350 35.734 361 205 6 14 366 24 365 3.19e-72 229
MS.gene41483.t1 MTR_7g084330 35.068 365 187 11 13 366 8 333 1.98e-59 195
MS.gene41483.t1 MTR_1g108660 33.967 368 189 12 14 365 9 338 8.53e-48 165
MS.gene41483.t1 MTR_5g093900 33.236 343 188 9 39 363 70 389 9.29e-47 164
MS.gene41483.t1 MTR_3g052700 33.538 325 177 8 39 347 68 369 4.86e-45 159
MS.gene41483.t1 MTR_3g054330 34.483 319 177 8 42 347 63 362 1.10e-43 155
MS.gene41483.t1 MTR_6g015620 32.258 124 79 3 243 365 18 137 6.21e-16 74.3
MS.gene41483.t1 MTR_7g084340 29.457 129 83 2 238 364 7 129 6.67e-14 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41483.t1 AT3G11480 40.650 369 189 6 2 365 36 379 1.91e-92 281
MS.gene41483.t1 AT5G04380 40.947 359 183 8 13 365 54 389 1.69e-88 272
MS.gene41483.t1 AT5G66430 38.798 366 205 5 2 365 6 354 1.18e-87 268
MS.gene41483.t1 AT5G04370 40.710 366 194 7 2 365 46 390 7.22e-87 268
MS.gene41483.t1 AT5G04370 40.710 366 194 7 2 365 51 395 1.62e-86 267
MS.gene41483.t1 AT5G04370 40.710 366 194 7 2 365 65 409 2.12e-86 267
MS.gene41483.t1 AT5G04380 41.471 340 174 7 28 365 2 318 1.05e-85 262
MS.gene41483.t1 AT5G04380 40.390 359 178 8 13 365 50 378 1.91e-85 264
MS.gene41483.t1 AT4G36470 39.842 379 188 9 2 365 17 370 4.72e-85 263
MS.gene41483.t1 AT3G21950 40.741 378 190 7 2 365 11 368 2.02e-84 261
MS.gene41483.t1 AT1G19640 42.818 362 180 6 2 344 14 367 9.86e-83 257
MS.gene41483.t1 AT5G38020 40.212 378 192 9 2 365 11 368 1.64e-82 256
MS.gene41483.t1 AT3G21950 38.060 402 199 7 2 365 11 400 4.63e-80 251
MS.gene41483.t1 AT5G38020 41.691 343 167 8 36 365 7 329 4.57e-79 246
MS.gene41483.t1 AT2G14060 37.534 373 205 8 2 365 19 372 1.88e-78 246
MS.gene41483.t1 AT2G14060 43.182 220 121 2 2 220 19 235 1.31e-59 193
MS.gene41483.t1 AT1G68040 32.603 365 203 8 2 355 18 350 1.03e-52 179
MS.gene41483.t1 AT5G55250 32.865 356 197 11 23 361 9 339 3.94e-47 164
MS.gene41483.t1 AT5G55250 32.095 377 214 11 2 361 26 377 5.37e-47 164
MS.gene41483.t1 AT5G38100 35.913 323 157 11 38 347 31 316 2.35e-45 159
MS.gene41483.t1 AT5G38100 35.913 323 157 11 38 347 54 339 4.42e-45 159
MS.gene41483.t1 AT1G15125 31.742 356 185 14 2 340 6 320 1.53e-43 154
MS.gene41483.t1 AT5G37970 33.828 337 179 8 40 365 59 362 2.92e-43 154
MS.gene41483.t1 AT4G26420 31.471 340 195 11 17 340 33 350 2.99e-41 149
MS.gene41483.t1 AT5G37990 33.431 341 175 12 40 365 59 362 8.73e-41 147
MS.gene41483.t1 AT5G38780 30.745 322 170 8 39 345 7 290 4.46e-39 141
MS.gene41483.t1 AT5G38780 30.745 322 170 8 39 345 56 339 1.00e-38 142
MS.gene41483.t1 AT5G56300 26.870 361 220 10 6 347 33 368 1.66e-37 139
MS.gene41483.t1 AT3G44840 30.259 347 193 10 2 338 12 319 1.94e-34 130
MS.gene41483.t1 AT3G44870 31.834 289 139 8 13 280 23 274 2.05e-33 128
MS.gene41483.t1 AT3G44860 32.414 290 139 8 13 280 23 277 8.47e-33 125
MS.gene41483.t1 AT1G66720 30.000 300 179 8 2 290 14 293 4.45e-32 124
MS.gene41483.t1 AT4G26420 33.058 242 138 8 17 242 21 254 4.87e-32 121
MS.gene41483.t1 AT1G66700 27.429 350 202 10 2 338 14 324 6.03e-32 123
MS.gene41483.t1 AT4G26420 33.766 231 129 8 17 231 33 255 2.99e-31 119
MS.gene41483.t1 AT5G38100 41.618 173 82 5 38 201 54 216 6.85e-30 115
MS.gene41483.t1 AT5G38100 41.618 173 82 5 38 201 54 216 7.40e-30 115
MS.gene41483.t1 AT1G15125 34.419 215 116 8 2 205 6 206 8.71e-28 109
MS.gene41483.t1 AT1G66690 25.556 360 196 10 2 338 14 324 1.30e-27 111
MS.gene41483.t1 AT1G66700 31.905 210 120 5 2 201 14 210 4.92e-25 102

Find 75 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGACTTGGGTTGCTCTTT+TGG 0.137193 3.1:-51712611 MS.gene41483:CDS
TGGAGGTTTCTGAAGTTAAT+TGG 0.209401 3.1:-51711682 MS.gene41483:CDS
AGCACCTTCAACTAATTCTT+TGG 0.262517 3.1:+51712084 None:intergenic
CGGGGAATGTGTTGCAATAT+AGG 0.287603 3.1:+51712648 None:intergenic
GCAAGGAGTGTTGTTACATT+TGG 0.289796 3.1:-51712015 MS.gene41483:CDS
GTCTGCAATTGCCAAGCTTC+CGG 0.298575 3.1:+51712628 None:intergenic
ACTGCAAGACCATATCATTA+AGG 0.304080 3.1:+51711975 None:intergenic
TAACAACACTCCTTGCTTGA+TGG 0.305696 3.1:+51712022 None:intergenic
TGTTACATCTATGGGGTTCC+TGG 0.309701 3.1:-51712395 MS.gene41483:CDS
ATCACATAGTTTCTCTTTGA+AGG 0.315688 3.1:+51712442 None:intergenic
GATGGAGATGGATAATAGTT+AGG 0.322863 3.1:+51711755 None:intergenic
ATAGGCCCGTGTTACATCTA+TGG 0.324301 3.1:-51712404 MS.gene41483:CDS
ATCATTTGTCATCAATAAAC+TGG 0.330242 3.1:-51711702 MS.gene41483:CDS
ACAACATGGCACAATGCATT+AGG 0.335650 3.1:-51711589 MS.gene41483:CDS
CAAGGAGTGTTGTTACATTT+GGG 0.342418 3.1:-51712014 MS.gene41483:CDS
CAGTCTTCAATGGCTATCTA+AGG 0.342755 3.1:-51712315 MS.gene41483:intron
ACAAAATGCAAACTATTATC+TGG 0.350999 3.1:+51712350 None:intergenic
GGCTATGGCCCTTAATGATA+TGG 0.355450 3.1:-51711984 MS.gene41483:CDS
CTTTGGTGAAGGTGTCATTA+AGG 0.358741 3.1:-51711537 MS.gene41483:CDS
TCTGCAATTGCCAAGCTTCC+GGG 0.370317 3.1:+51712629 None:intergenic
AGAGAAACTATGTGATGAAA+TGG 0.370752 3.1:-51712435 MS.gene41483:CDS
TGTCAACAATATGCTAAGAT+TGG 0.398803 3.1:+51711451 None:intergenic
AAGCTTGGCAATTGCAGACT+TGG 0.404644 3.1:-51712624 MS.gene41483:CDS
GATATCACCAACAAAGTGTT+TGG 0.405615 3.1:+51712587 None:intergenic
GATGAAATGGAAACTGAAAT+AGG 0.407347 3.1:-51712422 MS.gene41483:CDS
TTGAGGGGCTTGTGCTCGTC+AGG 0.408473 3.1:+51712170 None:intergenic
GTTGCAATATAGGTTGGTTA+TGG 0.409482 3.1:+51712658 None:intergenic
CAACATGGCACAATGCATTA+GGG 0.439012 3.1:-51711588 MS.gene41483:CDS
CTTGTTGTTATCAGCACCCT+CGG 0.446025 3.1:+51712204 None:intergenic
ATCTCCATCTGAAGTGAAGT+TGG 0.456867 3.1:-51711741 MS.gene41483:CDS
TAGGCCCGTGTTACATCTAT+GGG 0.457629 3.1:-51712403 MS.gene41483:CDS
CTGCAAGACCATATCATTAA+GGG 0.458632 3.1:+51711976 None:intergenic
ACGTTGTTGAAGTCATTTCC+CGG 0.462185 3.1:+51712482 None:intergenic
CTAGTTAGTCACTTTGGTGA+AGG 0.467251 3.1:-51711548 MS.gene41483:CDS
CCTTTGCTAGTTAGTCACTT+TGG 0.468922 3.1:-51711554 MS.gene41483:CDS
CAACACATTCCCCGGAAGCT+TGG 0.475670 3.1:-51712639 MS.gene41483:CDS
TCAAAATCACTCAGAGATGA+TGG 0.475783 3.1:-51711614 MS.gene41483:CDS
ACTTCCAACTTCACTTCAGA+TGG 0.478421 3.1:+51711737 None:intergenic
TAAGCCTTGATGACGTTTGA+GGG 0.483734 3.1:+51712154 None:intergenic
AGCTTGGCAATTGCAGACTT+GGG 0.487576 3.1:-51712623 MS.gene41483:CDS
CATTTCAGATTCAAAGTCAA+AGG 0.492353 3.1:+51711637 None:intergenic
ATTCCTCGTACAGTCTTCAA+TGG 0.498924 3.1:-51712325 MS.gene41483:CDS
ATGGAGATGGATAATAGTTA+GGG 0.500415 3.1:+51711756 None:intergenic
TTGTTACATTTGGGAACTCA+TGG 0.503339 3.1:-51712005 MS.gene41483:CDS
GTAAGCCTTGATGACGTTTG+AGG 0.505816 3.1:+51712153 None:intergenic
CGTGCCAAAGAATTAGTTGA+AGG 0.512292 3.1:-51712088 MS.gene41483:CDS
GAATGTGTTGCAATATAGGT+TGG 0.528201 3.1:+51712652 None:intergenic
TTTCTCTTTGAAGGTGTCAA+GGG 0.532238 3.1:+51712451 None:intergenic
CATTTGGGAACTCATGGCTA+TGG 0.538333 3.1:-51711999 MS.gene41483:CDS
GTTTCTCTTTGAAGGTGTCA+AGG 0.541705 3.1:+51712450 None:intergenic
AACTTCACTTCAGATGGAGA+TGG 0.545461 3.1:+51711743 None:intergenic
ATCAGAAATTATCAAAGGTG+TGG 0.551256 3.1:-51712567 MS.gene41483:CDS
GTTATGGCTTCGTCTCTCAA+AGG 0.551828 3.1:+51712674 None:intergenic
TTGTTGTTATCAGCACCCTC+GGG 0.561845 3.1:+51712205 None:intergenic
CTATATTGCAACACATTCCC+CGG 0.563925 3.1:-51712647 MS.gene41483:CDS
AAGCCCCTCAAACGTCATCA+AGG 0.564466 3.1:-51712158 MS.gene41483:CDS
AAGTTGGAAGTTCTCAATGA+AGG 0.574034 3.1:-51711725 MS.gene41483:CDS
GGTGATTCATTAGGTTCCCG+AGG 0.575270 3.1:-51712221 MS.gene41483:intron
CTGCAATTGCCAAGCTTCCG+GGG 0.575841 3.1:+51712630 None:intergenic
GGCACAATGCATTAGGGCTG+TGG 0.583370 3.1:-51711582 MS.gene41483:CDS
ATTTGTCATCAATAAACTGG+AGG 0.586227 3.1:-51711699 MS.gene41483:CDS
CCAAAGTGACTAACTAGCAA+AGG 0.593693 3.1:+51711554 None:intergenic
CGAGGGTGCTGATAACAACA+AGG 0.601768 3.1:-51712203 MS.gene41483:CDS
GTGATATCAGAAATTATCAA+AGG 0.602157 3.1:-51712572 MS.gene41483:CDS
AATTGTAAATACGCAGCGAA+AGG 0.609362 3.1:-51712714 MS.gene41483:CDS
AAGCCTTGATGACGTTTGAG+GGG 0.620674 3.1:+51712155 None:intergenic
ATGCGACAATCCATCAAGCA+AGG 0.626620 3.1:-51712032 MS.gene41483:CDS
GTGATTCATTAGGTTCCCGA+GGG 0.633096 3.1:-51712220 MS.gene41483:intron
CAGAGATGATGGATACAACA+TGG 0.638756 3.1:-51711603 MS.gene41483:CDS
ATTCTGCCATAAAATGAACC+AGG 0.644081 3.1:+51712377 None:intergenic
GGAACCCCATAGATGTAACA+CGG 0.651299 3.1:+51712398 None:intergenic
GAACCCCATAGATGTAACAC+GGG 0.684498 3.1:+51712399 None:intergenic
TAGCCATTGAAGACTGTACG+AGG 0.694298 3.1:+51712322 None:intergenic
GAGGGTGCTGATAACAACAA+GGG 0.727606 3.1:-51712202 MS.gene41483:CDS
AGGCCCGTGTTACATCTATG+GGG 0.761192 3.1:-51712402 MS.gene41483:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCAAAAATACTTTATATT+CGG + chr3.1:51711668-51711687 None:intergenic 10.0%
!!! ATAGAAAAATTTTAACTAAT+CGG - chr3.1:51712677-51712696 MS.gene41483:CDS 10.0%
!! TTCAAAAATACTTTATATTC+GGG + chr3.1:51711667-51711686 None:intergenic 15.0%
!!! TAGTTAAAATTTTTCTATAG+CGG + chr3.1:51712675-51712694 None:intergenic 15.0%
!! TTTAATCTACTCATAAAGAA+TGG - chr3.1:51711906-51711925 MS.gene41483:intron 20.0%
!!! TAGATATGAATATTTTGTGT+TGG - chr3.1:51711930-51711949 MS.gene41483:intron 20.0%
! ACAAAATGCAAACTATTATC+TGG + chr3.1:51711829-51711848 None:intergenic 25.0%
! ATCATTTGTCATCAATAAAC+TGG - chr3.1:51712474-51712493 MS.gene41483:CDS 25.0%
! GTGATATCAGAAATTATCAA+AGG - chr3.1:51711604-51711623 MS.gene41483:CDS 25.0%
!! CAAATGATTCTAACACTTTT+AGG - chr3.1:51712115-51712134 MS.gene41483:CDS 25.0%
!! TATGAATATTTTGTGTTGGA+TGG - chr3.1:51711934-51711953 MS.gene41483:intron 25.0%
!!! AGTATTTTTGAATGATCTAC+CGG - chr3.1:51711675-51711694 MS.gene41483:CDS 25.0%
!!! CAGATTTCTCTTTTTTTCTT+CGG - chr3.1:51712062-51712081 MS.gene41483:CDS 25.0%
AATTATTCAATGTATGCTCC+AGG - chr3.1:51712360-51712379 MS.gene41483:CDS 30.0%
AGAGAAACTATGTGATGAAA+TGG - chr3.1:51711741-51711760 MS.gene41483:CDS 30.0%
ATCACATAGTTTCTCTTTGA+AGG + chr3.1:51711737-51711756 None:intergenic 30.0%
ATCAGAAATTATCAAAGGTG+TGG - chr3.1:51711609-51711628 MS.gene41483:CDS 30.0%
ATGGAGATGGATAATAGTTA+GGG + chr3.1:51712423-51712442 None:intergenic 30.0%
ATTATTCAATGTATGCTCCA+GGG - chr3.1:51712361-51712380 MS.gene41483:CDS 30.0%
ATTTGTCATCAATAAACTGG+AGG - chr3.1:51712477-51712496 MS.gene41483:CDS 30.0%
CATTTCAGATTCAAAGTCAA+AGG + chr3.1:51712542-51712561 None:intergenic 30.0%
GATGAAATGGAAACTGAAAT+AGG - chr3.1:51711754-51711773 MS.gene41483:CDS 30.0%
TGTCAACAATATGCTAAGAT+TGG + chr3.1:51712728-51712747 None:intergenic 30.0%
!! GTATTTTTGAATGATCTACC+GGG - chr3.1:51711676-51711695 MS.gene41483:CDS 30.0%
AAGTTGGAAGTTCTCAATGA+AGG - chr3.1:51712451-51712470 MS.gene41483:CDS 35.0%
AATTGTAAATACGCAGCGAA+AGG - chr3.1:51711462-51711481 MS.gene41483:CDS 35.0%
ACTGCAAGACCATATCATTA+AGG + chr3.1:51712204-51712223 None:intergenic 35.0%
AGCACCTTCAACTAATTCTT+TGG + chr3.1:51712095-51712114 None:intergenic 35.0%
ATTCTGCCATAAAATGAACC+AGG + chr3.1:51711802-51711821 None:intergenic 35.0%
CTCATACTTTCACTCTATGA+GGG + chr3.1:51712280-51712299 None:intergenic 35.0%
CTGCAAGACCATATCATTAA+GGG + chr3.1:51712203-51712222 None:intergenic 35.0%
GAATGTGTTGCAATATAGGT+TGG + chr3.1:51711527-51711546 None:intergenic 35.0%
GATGGAGATGGATAATAGTT+AGG + chr3.1:51712424-51712443 None:intergenic 35.0%
TATGCATATGATAGCTCAGT+TGG - chr3.1:51712229-51712248 MS.gene41483:intron 35.0%
TCAAAATCACTCAGAGATGA+TGG - chr3.1:51712562-51712581 MS.gene41483:CDS 35.0%
TCTATGAGGGTGAATGTAAA+AGG + chr3.1:51712267-51712286 None:intergenic 35.0%
TCTCATACTTTCACTCTATG+AGG + chr3.1:51712281-51712300 None:intergenic 35.0%
TTGTTACATTTGGGAACTCA+TGG - chr3.1:51712171-51712190 MS.gene41483:CDS 35.0%
! GATATCACCAACAAAGTGTT+TGG + chr3.1:51711592-51711611 None:intergenic 35.0%
! TTTTGGACCAAACACTTTGT+TGG - chr3.1:51711582-51711601 MS.gene41483:CDS 35.0%
!! CAAGGAGTGTTGTTACATTT+GGG - chr3.1:51712162-51712181 MS.gene41483:CDS 35.0%
!! GGTGAACTTAGTTTTCTCTT+TGG + chr3.1:51712707-51712726 None:intergenic 35.0%
!! GTTGCAATATAGGTTGGTTA+TGG + chr3.1:51711521-51711540 None:intergenic 35.0%
!! TGGAGGTTTCTGAAGTTAAT+TGG - chr3.1:51712494-51712513 MS.gene41483:CDS 35.0%
!! TTTCTCTTTGAAGGTGTCAA+GGG + chr3.1:51711728-51711747 None:intergenic 35.0%
AACTTCACTTCAGATGGAGA+TGG + chr3.1:51712436-51712455 None:intergenic 40.0%
ACAACATGGCACAATGCATT+AGG - chr3.1:51712587-51712606 MS.gene41483:CDS 40.0%
ACGTTGTTGAAGTCATTTCC+CGG + chr3.1:51711697-51711716 None:intergenic 40.0%
ACTTCCAACTTCACTTCAGA+TGG + chr3.1:51712442-51712461 None:intergenic 40.0%
ATTCCTCGTACAGTCTTCAA+TGG - chr3.1:51711851-51711870 MS.gene41483:intron 40.0%
CAACATGGCACAATGCATTA+GGG - chr3.1:51712588-51712607 MS.gene41483:CDS 40.0%
CAGTCTTCAATGGCTATCTA+AGG - chr3.1:51711861-51711880 MS.gene41483:intron 40.0%
CCAAAGTGACTAACTAGCAA+AGG + chr3.1:51712625-51712644 None:intergenic 40.0%
CCTTTGCTAGTTAGTCACTT+TGG - chr3.1:51712622-51712641 MS.gene41483:CDS 40.0%
CGTGCCAAAGAATTAGTTGA+AGG - chr3.1:51712088-51712107 MS.gene41483:CDS 40.0%
CTATATTGCAACACATTCCC+CGG - chr3.1:51711529-51711548 MS.gene41483:CDS 40.0%
GTGTTGGATGGTGATTCATT+AGG - chr3.1:51711946-51711965 MS.gene41483:intron 40.0%
TAACAACACTCCTTGCTTGA+TGG + chr3.1:51712157-51712176 None:intergenic 40.0%
TCTCTTCGTTAATGATTCCC+TGG + chr3.1:51712381-51712400 None:intergenic 40.0%
! ATCTCCATCTGAAGTGAAGT+TGG - chr3.1:51712435-51712454 MS.gene41483:CDS 40.0%
! CTAGTTAGTCACTTTGGTGA+AGG - chr3.1:51712628-51712647 MS.gene41483:CDS 40.0%
!! CAGAGATGATGGATACAACA+TGG - chr3.1:51712573-51712592 MS.gene41483:CDS 40.0%
!! CTTTGGTGAAGGTGTCATTA+AGG - chr3.1:51712639-51712658 MS.gene41483:CDS 40.0%
!! GCAAGGAGTGTTGTTACATT+TGG - chr3.1:51712161-51712180 MS.gene41483:CDS 40.0%
!! GTTTCTCTTTGAAGGTGTCA+AGG + chr3.1:51711729-51711748 None:intergenic 40.0%
!! TAAGCCTTGATGACGTTTGA+GGG + chr3.1:51712025-51712044 None:intergenic 40.0%
AAGCTTGGCAATTGCAGACT+TGG - chr3.1:51711552-51711571 MS.gene41483:CDS 45.0%
AGCTTGGCAATTGCAGACTT+GGG - chr3.1:51711553-51711572 MS.gene41483:CDS 45.0%
ATAGGCCCGTGTTACATCTA+TGG - chr3.1:51711772-51711791 MS.gene41483:CDS 45.0%
ATGCGACAATCCATCAAGCA+AGG - chr3.1:51712144-51712163 MS.gene41483:CDS 45.0%
CATTTGGGAACTCATGGCTA+TGG - chr3.1:51712177-51712196 MS.gene41483:CDS 45.0%
CGGGGAATGTGTTGCAATAT+AGG + chr3.1:51711531-51711550 None:intergenic 45.0%
GAACCCCATAGATGTAACAC+GGG + chr3.1:51711780-51711799 None:intergenic 45.0%
GGAACCCCATAGATGTAACA+CGG + chr3.1:51711781-51711800 None:intergenic 45.0%
GGCTATGGCCCTTAATGATA+TGG - chr3.1:51712192-51712211 MS.gene41483:CDS 45.0%
GTGATTCATTAGGTTCCCGA+GGG - chr3.1:51711956-51711975 MS.gene41483:CDS 45.0%
GTTATGGCTTCGTCTCTCAA+AGG + chr3.1:51711505-51711524 None:intergenic 45.0%
TAGCCATTGAAGACTGTACG+AGG + chr3.1:51711857-51711876 None:intergenic 45.0%
TAGGCCCGTGTTACATCTAT+GGG - chr3.1:51711773-51711792 MS.gene41483:CDS 45.0%
TGTTACATCTATGGGGTTCC+TGG - chr3.1:51711781-51711800 MS.gene41483:CDS 45.0%
! GGGGTTCCTGGTTCATTTTA+TGG - chr3.1:51711793-51711812 MS.gene41483:CDS 45.0%
! TTGTTGTTATCAGCACCCTC+GGG + chr3.1:51711974-51711993 None:intergenic 45.0%
!! AAGCCTTGATGACGTTTGAG+GGG + chr3.1:51712024-51712043 None:intergenic 45.0%
!! CTTGTTGTTATCAGCACCCT+CGG + chr3.1:51711975-51711994 None:intergenic 45.0%
!! GAGGGTGCTGATAACAACAA+GGG - chr3.1:51711974-51711993 MS.gene41483:CDS 45.0%
!! GTAAGCCTTGATGACGTTTG+AGG + chr3.1:51712026-51712045 None:intergenic 45.0%
AAGCCCCTCAAACGTCATCA+AGG - chr3.1:51712018-51712037 MS.gene41483:CDS 50.0%
AGGCCCGTGTTACATCTATG+GGG - chr3.1:51711774-51711793 MS.gene41483:CDS 50.0%
GGTGATTCATTAGGTTCCCG+AGG - chr3.1:51711955-51711974 MS.gene41483:CDS 50.0%
GTCTGCAATTGCCAAGCTTC+CGG + chr3.1:51711551-51711570 None:intergenic 50.0%
TCTGCAATTGCCAAGCTTCC+GGG + chr3.1:51711550-51711569 None:intergenic 50.0%
!! CGAGGGTGCTGATAACAACA+AGG - chr3.1:51711973-51711992 MS.gene41483:CDS 50.0%
!! GCAGACTTGGGTTGCTCTTT+TGG - chr3.1:51711565-51711584 MS.gene41483:CDS 50.0%
CAACACATTCCCCGGAAGCT+TGG - chr3.1:51711537-51711556 MS.gene41483:CDS 55.0%
CTGCAATTGCCAAGCTTCCG+GGG + chr3.1:51711549-51711568 None:intergenic 55.0%
GGCACAATGCATTAGGGCTG+TGG - chr3.1:51712594-51712613 MS.gene41483:CDS 55.0%
TTGAGGGGCTTGTGCTCGTC+AGG + chr3.1:51712009-51712028 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 51711439 51712759 51711439 ID=MS.gene41483
chr3.1 mRNA 51711439 51712759 51711439 ID=MS.gene41483.t1;Parent=MS.gene41483
chr3.1 exon 51712316 51712759 51712316 ID=MS.gene41483.t1.exon1;Parent=MS.gene41483.t1
chr3.1 CDS 51712316 51712759 51712316 ID=cds.MS.gene41483.t1;Parent=MS.gene41483.t1
chr3.1 exon 51711952 51712230 51711952 ID=MS.gene41483.t1.exon2;Parent=MS.gene41483.t1
chr3.1 CDS 51711952 51712230 51711952 ID=cds.MS.gene41483.t1;Parent=MS.gene41483.t1
chr3.1 exon 51711439 51711816 51711439 ID=MS.gene41483.t1.exon3;Parent=MS.gene41483.t1
chr3.1 CDS 51711439 51711816 51711439 ID=cds.MS.gene41483.t1;Parent=MS.gene41483.t1
Gene Sequence

>MS.gene41483

ATGGGATCTGAATTTTATGCATCAATTGTAAATACGCAGCGAAAGGTGATTTCTTTAACAAAACCTTTGAGAGACGAAGCCATAACCAACCTATATTGCAACACATTCCCCGGAAGCTTGGCAATTGCAGACTTGGGTTGCTCTTTTGGACCAAACACTTTGTTGGTGATATCAGAAATTATCAAAGGTGTGGAAAAACTTTGTAAAGTGCATCATCATAAATCTCCCGAATATAAAGTATTTTTGAATGATCTACCGGGAAATGACTTCAACAACGTATTCAAGTCCCTTGACACCTTCAAAGAGAAACTATGTGATGAAATGGAAACTGAAATAGGCCCGTGTTACATCTATGGGGTTCCTGGTTCATTTTATGGCAGAATTTTTCCAGATAATAGTTTGCATTTTGTTCATTCCTCGTACAGTCTTCAATGGCTATCTAAGGTTTGTTAATTTCTACTATAGTATTTAATCTACTCATAAAGAATGGTTAGATATGAATATTTTGTGTTGGATGGTGATTCATTAGGTTCCCGAGGGTGCTGATAACAACAAGGGAAACATTTACCTGACGAGCACAAGCCCCTCAAACGTCATCAAGGCTTACTACAAGCAATTTCGAACAGATTTCTCTTTTTTTCTTCGGTGTCGTGCCAAAGAATTAGTTGAAGGTGCTCAAATGATTCTAACACTTTTAGGAAGAAAATGCGACAATCCATCAAGCAAGGAGTGTTGTTACATTTGGGAACTCATGGCTATGGCCCTTAATGATATGGTCTTGCAGTTAGACTATGCATATGATAGCTCAGTTGGTTTACATTAACTCCTTTTACATTCACCCTCATAGAGTGAAAGTATGAGAAAAAAAATTCTAAAATCTGAAGAAAAAAATATAATAATAAATTTAACGATATTAATATGAATTATTCAATGTATGCTCCAGGGAATCATTAACGAAGAGAAAATCAATACTTTCAACATCCCTAACTATTATCCATCTCCATCTGAAGTGAAGTTGGAAGTTCTCAATGAAGGATCATTTGTCATCAATAAACTGGAGGTTTCTGAAGTTAATTGGAATGCTCTTGATGATTGTAATGCCTTTGACTTTGAATCTGAAATGTCAAAATCACTCAGAGATGATGGATACAACATGGCACAATGCATTAGGGCTGTGGCTGAACCTTTGCTAGTTAGTCACTTTGGTGAAGGTGTCATTAAGGAGATTTTTGACCGCTATAGAAAAATTTTAACTAATCGGATGTCCAAAGAGAAAACTAAGTTCACCAATCTTAGCATATTGTTGACAAGAAAACCATGA
Protein sequence

>MS.gene41483.t1

MGSEFYASIVNTQRKVISLTKPLRDEAITNLYCNTFPGSLAIADLGCSFGPNTLLVISEIIKGVEKLCKVHHHKSPEYKVFLNDLPGNDFNNVFKSLDTFKEKLCDEMETEIGPCYIYGVPGSFYGRIFPDNSLHFVHSSYSLQWLSKVPEGADNNKGNIYLTSTSPSNVIKAYYKQFRTDFSFFLRCRAKELVEGAQMILTLLGRKCDNPSSKECCYIWELMAMALNDMVLQLDYAYDSSGIINEEKINTFNIPNYYPSPSEVKLEVLNEGSFVINKLEVSEVNWNALDDCNAFDFESEMSKSLRDDGYNMAQCIRAVAEPLLVSHFGEGVIKEIFDRYRKILTNRMSKEKTKFTNLSILLTRKP