AlfalfaGEDB | MS.gene056878

M. sativa cultivar XinJiangDaYe / MS.gene056878

KEGG: K01674
GO: -
PFAM: PF00194.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056878.t1	XP_013467985.1	96.3	267	10	0	1	267	1	267	2.20E-147	531.6

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056878.t1	O04846	44.7	262	142	2	6	267	11	269	3.9e-65	249.6

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056878.t1	A0A072VJP4	96.3	267	10	0	1	267	1	267	1.6e-147	531.6

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene056878	0.830201	3.36E-55	-1.69E-46
MS.gene049222	MS.gene056878	0.816794	4.60E-52	-1.69E-46
MS.gene049232	MS.gene056878	0.868206	7.76E-66	-1.69E-46
MS.gene049285	MS.gene056878	0.819206	1.31E-52	-1.69E-46
MS.gene049320	MS.gene056878	0.82053	6.53E-53	-1.69E-46
MS.gene049552	MS.gene056878	0.825162	5.45E-54	-1.69E-46
MS.gene049609	MS.gene056878	0.81144	6.99E-51	-1.69E-46
MS.gene049656	MS.gene056878	0.855502	6.04E-62	-1.69E-46
MS.gene049657	MS.gene056878	0.852798	3.64E-61	-1.69E-46
MS.gene049865	MS.gene056878	0.800631	1.32E-48	-1.69E-46

Showing 1 to 10 of 726 entries

Previous1 2 3 4 5…73Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056878.t1	MTR_1g059960	96.255	267	10	0	1	267	1	267	0.0	538
MS.gene056878.t1	MTR_1g059960	95.902	244	10	0	24	267	3	246	4.97e-179	492
MS.gene056878.t1	MTR_1g059940	85.338	266	39	0	1	266	1	266	2.10e-172	476
MS.gene056878.t1	MTR_1g059900	86.500	200	27	0	67	266	1	200	1.28e-129	365
MS.gene056878.t1	MTR_7g102960	41.791	268	139	6	7	264	9	269	3.06e-63	200
MS.gene056878.t1	MTR_0219s0070	39.483	271	151	7	2	265	6	270	1.75e-61	195
MS.gene056878.t1	MTR_1g062880	41.379	232	127	3	35	263	48	273	6.07e-60	191
MS.gene056878.t1	MTR_1g062860	36.502	263	157	4	9	266	19	276	1.52e-59	191
MS.gene056878.t1	MTR_7g090950	38.060	268	146	5	10	267	8	265	1.12e-55	180
MS.gene056878.t1	MTR_0219s0130	50.820	61	30	0	202	262	3	63	1.25e-17	75.5

Showing 1 to 10 of 10 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056878.t1	AT3G52720	44.656	262	142	2	6	267	11	269	2.95e-84	254
MS.gene056878.t1	AT3G52720	44.656	262	142	2	6	267	11	269	2.95e-84	254
MS.gene056878.t1	AT3G52720	44.656	262	142	2	6	267	11	269	2.95e-84	254
MS.gene056878.t1	AT3G52720	42.986	221	123	2	6	226	11	228	5.24e-64	200
MS.gene056878.t1	AT2G28210	39.179	268	148	6	5	263	10	271	1.09e-61	196
MS.gene056878.t1	AT1G08080	40.084	237	136	2	27	263	41	271	3.33e-60	192
MS.gene056878.t1	AT1G08065	35.849	265	156	4	7	263	10	268	1.34e-53	175
MS.gene056878.t1	AT4G20990	36.957	230	135	4	35	264	45	264	1.93e-53	174
MS.gene056878.t1	AT5G04180	38.521	257	143	7	9	258	5	253	8.47e-53	173
MS.gene056878.t1	AT4G21000	38.342	193	109	4	34	226	45	227	2.89e-42	145

Showing 1 to 10 of 13 entries

Previous1 2Next

Find 65 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGTGCCAAGGGCAATTT+TGG	0.183202	1.1:+45670560	None:intergenic
AAAGATGCCAAAATTGCCCT+TGG	0.564204	1.1:-45670567	MS.gene056878:CDS
AACTCTACCTTGGAGATTAG+AGG	0.392300	1.1:+45670842	None:intergenic
AATTCTTCTTATTGCAACTT+TGG	0.348144	1.1:-45672926	MS.gene056878:CDS
ACCAAATGGTCCTGAGAAGT+GGG	0.541655	1.1:-45672718	MS.gene056878:CDS
ACCTTGGAGATTAGAGGATC+AGG	0.444518	1.1:+45670848	None:intergenic
ACTACCCCTCCATGCAAAGA+AGG	0.533789	1.1:-45670480	MS.gene056878:CDS
ACTCATTGAAACAACTTCAT+TGG	0.373527	1.1:-45672216	MS.gene056878:CDS
AGGAACGTAGTTTCTGTCTA+AGG	0.272711	1.1:+45672596	None:intergenic
AGGATCACCCAAATTGTAGA+GGG	0.637120	1.1:+45670868	None:intergenic

Showing 1 to 10 of 65 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGGAATGTATTGGGATT+TGG	+	chr1.1:45670986-45671005	None:intergenic	30.0%
AAAGGAATGTATTGGGATTT+GGG	+	chr1.1:45670985-45671004	None:intergenic	30.0%
AAGAAAAATATACTGTCCCA+TGG	-	chr1.1:45671182-45671201	MS.gene056878:intron	30.0%
ACAGAGTACACAAATTGTTA+AGG	-	chr1.1:45670762-45670781	MS.gene056878:intron	30.0%
ACCGTGATATCAAATATGAA+CGG	+	chr1.1:45672300-45672319	None:intergenic	30.0%
ACCGTTCATATTTGATATCA+CGG	-	chr1.1:45672296-45672315	MS.gene056878:intron	30.0%
ACTCATTGAAACAACTTCAT+TGG	-	chr1.1:45670879-45670898	MS.gene056878:CDS	30.0%
AGGGAACAAATATAGAAGAA+AGG	+	chr1.1:45670948-45670967	None:intergenic	30.0%
AGGTACTAAGTTTAATCAGT+TGG	-	chr1.1:45672661-45672680	MS.gene056878:CDS	30.0%
AGTTTAATCAGTTGGTTATG+CGG	-	chr1.1:45672669-45672688	MS.gene056878:CDS	30.0%

Showing 1 to 10 of 186 entries

Previous1 2 3 4 5…19Next

Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	45670146	45672971	45670146	ID=MS.gene056878
chr1.1	mRNA	45670146	45672971	45670146	ID=MS.gene056878.t1;Parent=MS.gene056878
chr1.1	exon	45672902	45672971	45672902	ID=MS.gene056878.t1.exon1;Parent=MS.gene056878.t1
chr1.1	CDS	45672902	45672971	45672902	ID=cds.MS.gene056878.t1;Parent=MS.gene056878.t1
chr1.1	exon	45672557	45672765	45672557	ID=MS.gene056878.t1.exon2;Parent=MS.gene056878.t1
chr1.1	CDS	45672557	45672765	45672557	ID=cds.MS.gene056878.t1;Parent=MS.gene056878.t1
chr1.1	exon	45672181	45672287	45672181	ID=MS.gene056878.t1.exon3;Parent=MS.gene056878.t1
chr1.1	CDS	45672181	45672287	45672181	ID=cds.MS.gene056878.t1;Parent=MS.gene056878.t1
chr1.1	exon	45670850	45670955	45670850	ID=MS.gene056878.t1.exon4;Parent=MS.gene056878.t1
chr1.1	CDS	45670850	45670955	45670850	ID=cds.MS.gene056878.t1;Parent=MS.gene056878.t1
chr1.1	exon	45670455	45670637	45670455	ID=MS.gene056878.t1.exon5;Parent=MS.gene056878.t1
chr1.1	CDS	45670455	45670637	45670455	ID=cds.MS.gene056878.t1;Parent=MS.gene056878.t1
chr1.1	exon	45670146	45670274	45670146	ID=MS.gene056878.t1.exon6;Parent=MS.gene056878.t1
chr1.1	CDS	45670146	45670274	45670146	ID=cds.MS.gene056878.t1;Parent=MS.gene056878.t1

Gene Sequence

>MS.gene056878

ATGGCTTTGCAGATTTACTTCTCAATTCTTCTTATTGCAACTTTGGCTCTATGCACTTCAGCAAATTATAGTAAGATTTCATTTTGCATTTATAATAACTTAATTTGATTTGCTTCATAGTACACCAAAATAATAGATGCAGTTGATTAAATTATATGTTATGATATGATGATTACTTGTTATGACTAAAGTTTTTTTTATGCTAGATTCGGTTAATTTTAGTTATATTGGACCAAATGGTCCTGAGAAGTGGGGAACCCTGAGTCCATCGTTTGCAGCATGCTCAAATGGGAAAGCACAAAGTCCAGTGGAACTTGTAATGAATGATATTGTCATGAACCAAGAATTGAAACCCTTAGACAGAAACTACGTTCCTACGAATGCCACACTTGTTAACAATCAATTCAACATTGGGGTATGTATGTTCATCAACTATACAAATCTCTTAAAAAGTGTAAAAATTGTGGTTACCCCATCATAACTATATACTACCGACACTTCAAATCGAATATGTATTTGATGTCAGACACGAGTCGATGCCAATCATTTCTACTTTTCAAATTATTATTATTAGTCGGTGTCTAGGTATCAGTGTTGGGTCTAATGTCTGTTACAAACAGAGTACACAAATTGTTAAGGAAAATGGTGATGTCAACTGATATGGTTGAGTCTGTTAAAATATAGGTACATTTTGAAGGAAAAGTTGGAGATATTAACATAAATGGAATGAATTACTCATTGAAACAACTTCATTGGCATGCACCTGCAGAGCACAGGGCTCATGGTCGTTTGTAAGTCCCCTTTCTTCTATATTTGTTCCCTCTCTCTTCTTCTCTCCCAAATCCCAATACATTCCTTTTCCGTTATCCACATTTGAACTCGAGACCTCTAATTCCTTTAATCCTTAATTCAAATTAGTTGATTTATTCAAACCCTCTAATTACTTTGGTTAAAAAATTATTATTGTGACTTTTAACAAGCAAACGAAGCTTCTTAAAAAAAACAAGCAAACGAAGTTTCATATCAAACTACAACTAAGAAAAATATACTGTCCCATGGAAAAGAAAAAAAAATTAAACTAGGAACATACTGTATTCTAAGTTTGTCGATGCAAAAAATGAAAAGTACTTCTTGGAATGACTTGGTGAAACATAAAACTTAAAAAATATTTGAACTTTACCATTTTCTCCCTCCAACCATAATTGTTATACCATTTAGACAACCATAATTGTTATAGCAATTACATCTATATTTTTTTTTTTTCGTGGCCGGGGTTTGAACCCCGGACCTTGCATATATTATACATCGTCCCAACCAACTGAATCCCGGACAGCAATTACATCTATCTATCTATAGAAAAATCTGCTTATTATGGAATAGAACTTTTGGCCCGTGGCAGATCAGAAAAAAGAAGGAACAATATTTTTTATATTTAACTCGGCATTTTTTATAAACAGAAAGAGGGGAATAAAACGTTTGGTCAGTACCTATTGATTATTGTGAAACTCATAATTTATATTTAAAAAAGCAGTATTATTTTTATAAAAAAATGTCAGATTCTATTGTTGCATTTTTTTTTAGAAGCCAAATGATGCTTATAAATATTTTATTATTTTACTATTAAAAAATGTCAAGAAATTGTTTTATATGGTAATTCAACAAAATATTTAAAGGATAGGAGGTAATTATTTTCTATATAACTTAATAGATCCTTTCAAACCATTTTTATTAGTCATGAAGCTTGATAATGACAACTTGAGGTAGATAATGTGACACATGTAGAACATAAGAGACACAATTTTTCTTTAGTTCCAGATTTTTGTCAAGGAATAAATTCTATTTTATCTTTTATTACCATATCGTATATTCTACATTTAATTTAATATATATTAGTACAAGGAATGGGATTCCATGCATTCTGATTTATTCTAGCCTACGCCTCTAATAAAAATCTATTTAACCCTTACAAATTACAATGTTAGTTATTAATCTTTGTACAAAATATTCCAAATACAGACATGAGGCAGAGCTCCACCTAGTTCACCTTACAGAAGATAACAATAACATAGCAGTTGTGGCAGCCCTCTACAATTTGGGTGATCCTGATCCTCTAATCTCCAAGGTAGAGTTATTTAAGTCACATTCACAACACCGTTCATATTTGATATCACGGTAAATTTGTCGAAGTCATGGCAATTCATCATGATTCTGTCAAATTTACCACGAATCCAAACAAGGATTACATGACTCAAGAGTCAAGACTATAAAGTGGTAAATGTAGAATTTATTATTTGGATAGTATAGCTACTAATTACATGTGGTTCTTGAATGCAGATTGAAGACAAGTTCTATGAGCTAGCCAATGAGAATCGTGTGGGCAACAAAGATGCCAAAATTGCCCTTGGCACGTTTGATGTAGAGGAAATAAATAAAAGGATCCATAGATATTATAGATATGTTGGCTCTCTCACTACCCCTCCATGCAAAGAAGGTGTCATTTGGAACATCATTGGCAAGGTACTAAGTTTAATCAGTTGGTTATGCGGTGATTGAAATTGATTTTGACCGAATTGGTTTTATAAACTTGATTTTACTAAAAGTGAATTAAATATAAAGTAATTTGTGTTTGGGCAGACTAATAATTTTTATTAATTTTTGCTTTTGGAAAAATTAATTTCTTACTTAATGAGCATGCAGGTTAGGACACTCTCCAAAGAACAACTAAAACTTTTAAAGGCACCACTGGGTGTAGAGTTCCAGCACAATGCAAGGCCACTTCAGCCATTGAATGGTCGCAAAATTGAGATGTACAACTACCACAAATAG

Protein sequence

>MS.gene056878.t1

MALQIYFSILLIATLALCTSANYNSVNFSYIGPNGPEKWGTLSPSFAACSNGKAQSPVELVMNDIVMNQELKPLDRNYVPTNATLVNNQFNIGVHFEGKVGDININGMNYSLKQLHWHAPAEHRAHGRLHEAELHLVHLTEDNNNIAVVAALYNLGDPDPLISKIEDKFYELANENRVGNKDAKIALGTFDVEEINKRIHRYYRYVGSLTTPPCKEGVIWNIIGKVRTLSKEQLKLLKAPLGVEFQHNARPLQPLNGRKIEMYNYHK