AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056878


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056878.t1 MTR_1g059960 96.255 267 10 0 1 267 1 267 0.0 538
MS.gene056878.t1 MTR_1g059960 95.902 244 10 0 24 267 3 246 4.97e-179 492
MS.gene056878.t1 MTR_1g059940 85.338 266 39 0 1 266 1 266 2.10e-172 476
MS.gene056878.t1 MTR_1g059900 86.500 200 27 0 67 266 1 200 1.28e-129 365
MS.gene056878.t1 MTR_7g102960 41.791 268 139 6 7 264 9 269 3.06e-63 200
MS.gene056878.t1 MTR_0219s0070 39.483 271 151 7 2 265 6 270 1.75e-61 195
MS.gene056878.t1 MTR_1g062880 41.379 232 127 3 35 263 48 273 6.07e-60 191
MS.gene056878.t1 MTR_1g062860 36.502 263 157 4 9 266 19 276 1.52e-59 191
MS.gene056878.t1 MTR_7g090950 38.060 268 146 5 10 267 8 265 1.12e-55 180
MS.gene056878.t1 MTR_0219s0130 50.820 61 30 0 202 262 3 63 1.25e-17 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056878.t1 AT3G52720 44.656 262 142 2 6 267 11 269 2.95e-84 254
MS.gene056878.t1 AT3G52720 44.656 262 142 2 6 267 11 269 2.95e-84 254
MS.gene056878.t1 AT3G52720 44.656 262 142 2 6 267 11 269 2.95e-84 254
MS.gene056878.t1 AT3G52720 42.986 221 123 2 6 226 11 228 5.24e-64 200
MS.gene056878.t1 AT2G28210 39.179 268 148 6 5 263 10 271 1.09e-61 196
MS.gene056878.t1 AT1G08080 40.084 237 136 2 27 263 41 271 3.33e-60 192
MS.gene056878.t1 AT1G08065 35.849 265 156 4 7 263 10 268 1.34e-53 175
MS.gene056878.t1 AT4G20990 36.957 230 135 4 35 264 45 264 1.93e-53 174
MS.gene056878.t1 AT5G04180 38.521 257 143 7 9 258 5 253 8.47e-53 173
MS.gene056878.t1 AT4G21000 38.342 193 109 4 34 226 45 227 2.89e-42 145
MS.gene056878.t1 AT5G56330 32.787 244 115 5 24 263 136 334 1.11e-34 128
MS.gene056878.t1 AT5G56330 39.053 169 94 4 24 184 136 303 4.79e-31 117
MS.gene056878.t1 AT2G28210 39.850 133 71 4 5 128 10 142 4.21e-24 95.5

Find 65 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTCTAAGGGTTTCAATTCT+TGG 0.170815 1.1:+45672610 None:intergenic
AAACGTGCCAAGGGCAATTT+TGG 0.183202 1.1:+45670560 None:intergenic
GTTGGAGATATTAACATAAA+TGG 0.232737 1.1:-45672247 MS.gene056878:CDS
AGGAACGTAGTTTCTGTCTA+AGG 0.272711 1.1:+45672596 None:intergenic
TGTGGCAGCCCTCTACAATT+TGG 0.284561 1.1:-45670876 MS.gene056878:CDS
CCCCACTTCTCAGGACCATT+TGG 0.327367 1.1:+45672717 None:intergenic
ATGTAGAGGAAATAAATAAA+AGG 0.341861 1.1:-45670536 MS.gene056878:CDS
TTAACAATCAATTCAACATT+GGG 0.346308 1.1:-45672557 MS.gene056878:CDS
AATTCTTCTTATTGCAACTT+TGG 0.348144 1.1:-45672926 MS.gene056878:CDS
CAACATATCTATAATATCTA+TGG 0.348697 1.1:+45670511 None:intergenic
GAATCCCATGTCTCTATTTG+TGG 0.358258 1.1:+45670133 None:intergenic
ACTCATTGAAACAACTTCAT+TGG 0.373527 1.1:-45672216 MS.gene056878:CDS
CATGCAAAGAAGGTGTCATT+TGG 0.384098 1.1:-45670470 MS.gene056878:CDS
TCGTTTGCAGCATGCTCAAA+TGG 0.388881 1.1:-45672681 MS.gene056878:CDS
GTGGCAGCCCTCTACAATTT+GGG 0.391362 1.1:-45670875 MS.gene056878:CDS
AACTCTACCTTGGAGATTAG+AGG 0.392300 1.1:+45670842 None:intergenic
TGTTATTGTTATCTTCTGTA+AGG 0.397207 1.1:+45670906 None:intergenic
CTCAGGGTTCCCCACTTCTC+AGG 0.400725 1.1:+45672708 None:intergenic
TTTAGTTATATTGGACCAAA+TGG 0.408021 1.1:-45672732 MS.gene056878:CDS
GGCATGCACCTGCAGAGCAC+AGG 0.420992 1.1:-45672195 MS.gene056878:CDS
CCATGAGCCCTGTGCTCTGC+AGG 0.431436 1.1:+45672187 None:intergenic
ACCTTGGAGATTAGAGGATC+AGG 0.444518 1.1:+45670848 None:intergenic
GGTGTCATTTGGAACATCAT+TGG 0.445336 1.1:-45670459 MS.gene056878:CDS
GTTGCCCACACGATTCTCAT+TGG 0.455045 1.1:+45670590 None:intergenic
GAAGTGGCCTTGCATTGTGC+TGG 0.462504 1.1:+45670193 None:intergenic
GTTAACAATCAATTCAACAT+TGG 0.466983 1.1:-45672558 MS.gene056878:CDS
TATCTTCTGTAAGGTGAACT+AGG 0.473509 1.1:+45670915 None:intergenic
CCTTGGCACGTTTGATGTAG+AGG 0.490692 1.1:-45670550 MS.gene056878:CDS
CAAATGACACCTTCTTTGCA+TGG 0.493029 1.1:+45670471 None:intergenic
CATAGATATTATAGATATGT+TGG 0.494664 1.1:-45670510 MS.gene056878:CDS
CGTTTGCAGCATGCTCAAAT+GGG 0.497742 1.1:-45672680 MS.gene056878:CDS
GGAACGTAGTTTCTGTCTAA+GGG 0.501816 1.1:+45672597 None:intergenic
ATGCTGCAAACGATGGACTC+AGG 0.504036 1.1:+45672691 None:intergenic
CCTGCAGAGCACAGGGCTCA+TGG 0.505272 1.1:-45672187 MS.gene056878:CDS
CGACCATTCAATGGCTGAAG+TGG 0.505749 1.1:+45670177 None:intergenic
TCATTCATTACAAGTTCCAC+TGG 0.530814 1.1:+45672645 None:intergenic
AGGCCACTTCAGCCATTGAA+TGG 0.533333 1.1:-45670180 MS.gene056878:CDS
ACTACCCCTCCATGCAAAGA+AGG 0.533789 1.1:-45670480 MS.gene056878:CDS
CCTCTACATCAAACGTGCCA+AGG 0.536082 1.1:+45670550 None:intergenic
ACCAAATGGTCCTGAGAAGT+GGG 0.541655 1.1:-45672718 MS.gene056878:CDS
GACCAAATGGTCCTGAGAAG+TGG 0.543240 1.1:-45672719 MS.gene056878:CDS
TAACAATAACATAGCAGTTG+TGG 0.545736 1.1:-45670894 MS.gene056878:CDS
GCATGCACCTGCAGAGCACA+GGG 0.546819 1.1:-45672194 MS.gene056878:CDS
TGACACCTTCTTTGCATGGA+GGG 0.546979 1.1:+45670475 None:intergenic
AAAGATGCCAAAATTGCCCT+TGG 0.564204 1.1:-45670567 MS.gene056878:CDS
TTAACAAGTGTGGCATTCGT+AGG 0.569947 1.1:+45672576 None:intergenic
TGCTGCAAACGATGGACTCA+GGG 0.573943 1.1:+45672692 None:intergenic
TTTGAGCATGCTGCAAACGA+TGG 0.579578 1.1:+45672684 None:intergenic
GACACCTTCTTTGCATGGAG+GGG 0.587126 1.1:+45670476 None:intergenic
CTCTACATCAAACGTGCCAA+GGG 0.596044 1.1:+45670551 None:intergenic
TAGAGTTCCAGCACAATGCA+AGG 0.599993 1.1:-45670200 MS.gene056878:CDS
TCCTGATCCTCTAATCTCCA+AGG 0.601948 1.1:-45670849 MS.gene056878:intron
CAGGATCACCCAAATTGTAG+AGG 0.616295 1.1:+45670867 None:intergenic
GAATTGATTGTTAACAAGTG+TGG 0.624710 1.1:+45672566 None:intergenic
CATTTGGAACATCATTGGCA+AGG 0.625922 1.1:-45670454 MS.gene056878:intron
TAACAATCAATTCAACATTG+GGG 0.628916 1.1:-45672556 MS.gene056878:intron
AGGATCACCCAAATTGTAGA+GGG 0.637120 1.1:+45670868 None:intergenic
ATGACACCTTCTTTGCATGG+AGG 0.651112 1.1:+45670474 None:intergenic
GCTAGCCAATGAGAATCGTG+TGG 0.657074 1.1:-45670595 MS.gene056878:CDS
TGGGAAAGCACAAAGTCCAG+TGG 0.663928 1.1:-45672661 MS.gene056878:CDS
CTAGCCAATGAGAATCGTGT+GGG 0.675900 1.1:-45670594 MS.gene056878:CDS
ATATTCCAAATACAGACATG+AGG 0.693811 1.1:-45670948 MS.gene056878:intron
CCAAATGGTCCTGAGAAGTG+GGG 0.710021 1.1:-45672717 MS.gene056878:CDS
CTTCTGTAAGGTGAACTAGG+TGG 0.710976 1.1:+45670918 None:intergenic
TGCTGGAACTCTACACCCAG+TGG 0.713140 1.1:+45670210 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAAAAAAAAATTAAACT+AGG - chr1.1:45671206-45671225 MS.gene056878:intron 10.0%
!! ATTTAATATATATTAGTACA+AGG - chr1.1:45672023-45672042 MS.gene056878:intron 10.0%
!! TAAATGTAGAATTTATTATT+TGG - chr1.1:45672418-45672437 MS.gene056878:intron 10.0%
!! TAATTCAACAAAATATTTAA+AGG - chr1.1:45671797-45671816 MS.gene056878:intron 10.0%
!! TTCAAATTATTATTATTAGT+CGG - chr1.1:45670701-45670720 MS.gene056878:intron 10.0%
!!! TTTTTATTAATTTTTGCTTT+TGG - chr1.1:45672788-45672807 MS.gene056878:intron 10.0%
!! AAATATTTATAAGCATCATT+TGG + chr1.1:45671733-45671752 None:intergenic 15.0%
!! AAATCAACTAATTTGAATTA+AGG + chr1.1:45671051-45671070 None:intergenic 15.0%
!! TAATTTGAATTAAGGATTAA+AGG + chr1.1:45671043-45671062 None:intergenic 15.0%
!!! AATATAAAGTAATTTGTGTT+TGG - chr1.1:45672753-45672772 MS.gene056878:intron 15.0%
!!! AATTTTTTTTTCTTTTCCAT+GGG + chr1.1:45671201-45671220 None:intergenic 15.0%
!!! ATATAAAGTAATTTGTGTTT+GGG - chr1.1:45672754-45672773 MS.gene056878:intron 15.0%
!!! ATTTTTTATAAACAGAAAGA+GGG - chr1.1:45671588-45671607 MS.gene056878:intron 15.0%
!!! GTTAAATAGATTTTTATTAG+AGG + chr1.1:45672087-45672106 None:intergenic 15.0%
!!! TAATTTTTTTTTCTTTTCCA+TGG + chr1.1:45671202-45671221 None:intergenic 15.0%
!!! TCTATATTTTTTTTTTTTCG+TGG - chr1.1:45671391-45671410 MS.gene056878:intron 15.0%
!! ACTAATAAAAATGGTTTGAA+AGG + chr1.1:45671859-45671878 None:intergenic 20.0%
!! ATAGAAAAATCTGCTTATTA+TGG - chr1.1:45671498-45671517 MS.gene056878:intron 20.0%
!! ATATATATTAGTACAAGGAA+TGG - chr1.1:45672028-45672047 MS.gene056878:intron 20.0%
!! ATGTAGAGGAAATAAATAAA+AGG - chr1.1:45672559-45672578 MS.gene056878:CDS 20.0%
!! ATTTGAAAAGTAGAAATGAT+TGG + chr1.1:45670688-45670707 None:intergenic 20.0%
!! CAACAAAATATTTAAAGGAT+AGG - chr1.1:45671802-45671821 MS.gene056878:intron 20.0%
!! CAACATATCTATAATATCTA+TGG + chr1.1:45672587-45672606 None:intergenic 20.0%
!! CATAGATATTATAGATATGT+TGG - chr1.1:45672585-45672604 MS.gene056878:CDS 20.0%
!! TAAATGTAGAATATACGATA+TGG + chr1.1:45672003-45672022 None:intergenic 20.0%
!! TATATATTAGTACAAGGAAT+GGG - chr1.1:45672029-45672048 MS.gene056878:intron 20.0%
!! TCAAGTTTATAAAACCAATT+CGG + chr1.1:45672714-45672733 None:intergenic 20.0%
!! TCTAAATGGTATAACAATTA+TGG + chr1.1:45671345-45671364 None:intergenic 20.0%
!! TGTAATTGCTATAACAATTA+TGG + chr1.1:45671371-45671390 None:intergenic 20.0%
!! TTAACAATCAATTCAACATT+GGG - chr1.1:45670538-45670557 MS.gene056878:CDS 20.0%
!!! AAAAAATGAAAAGTACTTCT+TGG - chr1.1:45671258-45671277 MS.gene056878:intron 20.0%
!!! AAAATATAGGTACATTTTGA+AGG - chr1.1:45670821-45670840 MS.gene056878:intron 20.0%
!!! AACTAACATTGTAATTTGTA+AGG + chr1.1:45672110-45672129 None:intergenic 20.0%
!!! ACTAACATTGTAATTTGTAA+GGG + chr1.1:45672109-45672128 None:intergenic 20.0%
!!! AGAACAACTAAAACTTTTAA+AGG - chr1.1:45672860-45672879 MS.gene056878:intron 20.0%
!!! AGTTTTTTTTATGCTAGATT+CGG - chr1.1:45670335-45670354 MS.gene056878:intron 20.0%
!!! CATTTTTTATAAACAGAAAG+AGG - chr1.1:45671587-45671606 MS.gene056878:intron 20.0%
!!! CTTAAAAAGTGTAAAAATTG+TGG - chr1.1:45670590-45670609 MS.gene056878:CDS 20.0%
!!! TAAAAGTTTTAGTTGTTCTT+TGG + chr1.1:45672859-45672878 None:intergenic 20.0%
!!! TCGGTTAATTTTAGTTATAT+TGG - chr1.1:45670354-45670373 MS.gene056878:intron 20.0%
!!! TGTCAAGAAATTGTTTTATA+TGG - chr1.1:45671774-45671793 MS.gene056878:intron 20.0%
!!! TTATTATGGAATAGAACTTT+TGG - chr1.1:45671512-45671531 MS.gene056878:intron 20.0%
!!! TTTTAACCAAAGTAATTAGA+GGG + chr1.1:45671081-45671100 None:intergenic 20.0%
!!! TTTTTAACCAAAGTAATTAG+AGG + chr1.1:45671082-45671101 None:intergenic 20.0%
!!! TTTTTTATAAACAGAAAGAG+GGG - chr1.1:45671589-45671608 MS.gene056878:intron 20.0%
! AACAATTATGGTTGTCTAAA+TGG + chr1.1:45671359-45671378 None:intergenic 25.0%
! AATGGTATAACAATTATGGT+TGG + chr1.1:45671341-45671360 None:intergenic 25.0%
! AATTCTTCTTATTGCAACTT+TGG - chr1.1:45670169-45670188 MS.gene056878:CDS 25.0%
! ACACAAATTGTTAAGGAAAA+TGG - chr1.1:45670769-45670788 MS.gene056878:intron 25.0%
! AGCTTCATGACTAATAAAAA+TGG + chr1.1:45671868-45671887 None:intergenic 25.0%
! CAAAATATTTAAAGGATAGG+AGG - chr1.1:45671805-45671824 MS.gene056878:intron 25.0%
! GTTAACAATCAATTCAACAT+TGG - chr1.1:45670537-45670556 MS.gene056878:CDS 25.0%
! GTTGGAGATATTAACATAAA+TGG - chr1.1:45670848-45670867 MS.gene056878:intron 25.0%
! TAACAATCAATTCAACATTG+GGG - chr1.1:45670539-45670558 MS.gene056878:CDS 25.0%
! TGAGTTTCACAATAATCAAT+AGG + chr1.1:45671635-45671654 None:intergenic 25.0%
! TGTTATTGTTATCTTCTGTA+AGG + chr1.1:45672192-45672211 None:intergenic 25.0%
! TTAAGGATTAAAGGAATTAG+AGG + chr1.1:45671034-45671053 None:intergenic 25.0%
! TTTAGTTATATTGGACCAAA+TGG - chr1.1:45670363-45670382 MS.gene056878:intron 25.0%
! TTTATTCCTTGACAAAAATC+TGG + chr1.1:45671960-45671979 None:intergenic 25.0%
!! ATCAACTGCATCTATTATTT+TGG + chr1.1:45670273-45670292 None:intergenic 25.0%
!!! TATTTTTTTTTTTTCGTGGC+CGG - chr1.1:45671395-45671414 MS.gene056878:intron 25.0%
AAAAGGAATGTATTGGGATT+TGG + chr1.1:45670986-45671005 None:intergenic 30.0%
AAAGGAATGTATTGGGATTT+GGG + chr1.1:45670985-45671004 None:intergenic 30.0%
AAGAAAAATATACTGTCCCA+TGG - chr1.1:45671182-45671201 MS.gene056878:intron 30.0%
ACAGAGTACACAAATTGTTA+AGG - chr1.1:45670762-45670781 MS.gene056878:intron 30.0%
ACCGTGATATCAAATATGAA+CGG + chr1.1:45672300-45672319 None:intergenic 30.0%
ACCGTTCATATTTGATATCA+CGG - chr1.1:45672296-45672315 MS.gene056878:intron 30.0%
ACTCATTGAAACAACTTCAT+TGG - chr1.1:45670879-45670898 MS.gene056878:CDS 30.0%
AGGGAACAAATATAGAAGAA+AGG + chr1.1:45670948-45670967 None:intergenic 30.0%
AGGTACTAAGTTTAATCAGT+TGG - chr1.1:45672661-45672680 MS.gene056878:CDS 30.0%
AGTTTAATCAGTTGGTTATG+CGG - chr1.1:45672669-45672688 MS.gene056878:CDS 30.0%
ATATTCCAAATACAGACATG+AGG - chr1.1:45672147-45672166 MS.gene056878:intron 30.0%
CGGTAGTATATAGTTATGAT+GGG + chr1.1:45670620-45670639 None:intergenic 30.0%
CTAGAATAAATCAGAATGCA+TGG + chr1.1:45672058-45672077 None:intergenic 30.0%
GAATTGATTGTTAACAAGTG+TGG + chr1.1:45670532-45670551 None:intergenic 30.0%
GACGATGTATAATATATGCA+AGG + chr1.1:45671436-45671455 None:intergenic 30.0%
GGAACAAATATAGAAGAAAG+GGG + chr1.1:45670946-45670965 None:intergenic 30.0%
GGGAACAAATATAGAAGAAA+GGG + chr1.1:45670947-45670966 None:intergenic 30.0%
GGTAGTATATAGTTATGATG+GGG + chr1.1:45670619-45670638 None:intergenic 30.0%
GGTTGAGTCTGTTAAAATAT+AGG - chr1.1:45670808-45670827 MS.gene056878:intron 30.0%
GTATAACAATTATGGTTGGA+GGG + chr1.1:45671337-45671356 None:intergenic 30.0%
GTATAGCTACTAATTACATG+TGG - chr1.1:45672444-45672463 MS.gene056878:intron 30.0%
TAACAATAACATAGCAGTTG+TGG - chr1.1:45672201-45672220 MS.gene056878:CDS 30.0%
TAACGGAAAAGGAATGTATT+GGG + chr1.1:45670992-45671011 None:intergenic 30.0%
TCGGTAGTATATAGTTATGA+TGG + chr1.1:45670621-45670640 None:intergenic 30.0%
TGACTTAAATAACTCTACCT+TGG + chr1.1:45672266-45672285 None:intergenic 30.0%
TGTATAATATATGCAAGGTC+CGG + chr1.1:45671431-45671450 None:intergenic 30.0%
TTCAAACCCTCTAATTACTT+TGG - chr1.1:45671072-45671091 MS.gene056878:intron 30.0%
! ACATATTCGATTTGAAGTGT+CGG + chr1.1:45670640-45670659 None:intergenic 30.0%
! ATAACGGAAAAGGAATGTAT+TGG + chr1.1:45670993-45671012 None:intergenic 30.0%
! ATTATTATTAGTCGGTGTCT+AGG - chr1.1:45670709-45670728 MS.gene056878:intron 30.0%
! TTAGTTCCAGATTTTTGTCA+AGG - chr1.1:45671951-45671970 MS.gene056878:intron 30.0%
!! GAAATTGATTTTGACCGAAT+TGG - chr1.1:45672697-45672716 MS.gene056878:CDS 30.0%
!! GTACATTTTGAAGGAAAAGT+TGG - chr1.1:45670830-45670849 MS.gene056878:intron 30.0%
!! TAGATTTTTATTAGAGGCGT+AGG + chr1.1:45672081-45672100 None:intergenic 30.0%
!!! ATTTTTTTTTTTTCGTGGCC+GGG - chr1.1:45671396-45671415 MS.gene056878:intron 30.0%
AAAGAGGGGAATAAAACGTT+TGG - chr1.1:45671603-45671622 MS.gene056878:intron 35.0%
AAGTACTTCTTGGAATGACT+TGG - chr1.1:45671268-45671287 MS.gene056878:intron 35.0%
AGATAGATGTAATTGCTGTC+CGG + chr1.1:45671474-45671493 None:intergenic 35.0%
ATTTACCACGAATCCAAACA+AGG - chr1.1:45672361-45672380 MS.gene056878:intron 35.0%
CAAGAGTCAAGACTATAAAG+TGG - chr1.1:45672395-45672414 MS.gene056878:intron 35.0%
GGTATAACAATTATGGTTGG+AGG + chr1.1:45671338-45671357 None:intergenic 35.0%
GTATAATATATGCAAGGTCC+GGG + chr1.1:45671430-45671449 None:intergenic 35.0%
TATAATATATGCAAGGTCCG+GGG + chr1.1:45671429-45671448 None:intergenic 35.0%
TATCTTCTGTAAGGTGAACT+AGG + chr1.1:45672183-45672202 None:intergenic 35.0%
TCATTCATTACAAGTTCCAC+TGG + chr1.1:45670453-45670472 None:intergenic 35.0%
TCGAGTTCAAATGTGGATAA+CGG + chr1.1:45671009-45671028 None:intergenic 35.0%
TGAGTCATGTAATCCTTGTT+TGG + chr1.1:45672377-45672396 None:intergenic 35.0%
TGTCTAAGGGTTTCAATTCT+TGG + chr1.1:45670488-45670507 None:intergenic 35.0%
TTCTTACTTAATGAGCATGC+AGG - chr1.1:45672821-45672840 MS.gene056878:intron 35.0%
! AATGGTGATGTCAACTGATA+TGG - chr1.1:45670787-45670806 MS.gene056878:intron 35.0%
! TCAATTTTGCGACCATTCAA+TGG + chr1.1:45672930-45672949 None:intergenic 35.0%
!! AGCTTGATAATGACAACTTG+AGG - chr1.1:45671884-45671903 MS.gene056878:intron 35.0%
!! TCAAATGTGGATAACGGAAA+AGG + chr1.1:45671003-45671022 None:intergenic 35.0%
!!! AAAACTTTTAAAGGCACCAC+TGG - chr1.1:45672869-45672888 MS.gene056878:intron 35.0%
!!! AAACTTTTAAAGGCACCACT+GGG - chr1.1:45672870-45672889 MS.gene056878:intron 35.0%
!!! TTCTTTTTTCTGATCTGCCA+CGG + chr1.1:45671539-45671558 None:intergenic 35.0%
!!! TTTTTTTTTTTTCGTGGCCG+GGG - chr1.1:45671397-45671416 MS.gene056878:intron 35.0%
AAAGATGCCAAAATTGCCCT+TGG - chr1.1:45672528-45672547 MS.gene056878:intron 40.0%
AACTCTACCTTGGAGATTAG+AGG + chr1.1:45672256-45672275 None:intergenic 40.0%
ACTTAATGAGCATGCAGGTT+AGG - chr1.1:45672826-45672845 MS.gene056878:intron 40.0%
AGGAACGTAGTTTCTGTCTA+AGG + chr1.1:45670502-45670521 None:intergenic 40.0%
AGGATCACCCAAATTGTAGA+GGG + chr1.1:45672230-45672249 None:intergenic 40.0%
CAAATGACACCTTCTTTGCA+TGG + chr1.1:45672627-45672646 None:intergenic 40.0%
CGGTAAATTTGTCGAAGTCA+TGG - chr1.1:45672316-45672335 MS.gene056878:intron 40.0%
GATAGATGTAATTGCTGTCC+GGG + chr1.1:45671473-45671492 None:intergenic 40.0%
GGAACGTAGTTTCTGTCTAA+GGG + chr1.1:45670501-45670520 None:intergenic 40.0%
GTGGCAGATCAGAAAAAAGA+AGG - chr1.1:45671538-45671557 MS.gene056878:intron 40.0%
TTAACAAGTGTGGCATTCGT+AGG + chr1.1:45670522-45670541 None:intergenic 40.0%
TTATGGTTGGAGGGAGAAAA+TGG + chr1.1:45671328-45671347 None:intergenic 40.0%
! CATTTGGAACATCATTGGCA+AGG - chr1.1:45672641-45672660 MS.gene056878:CDS 40.0%
! GTAATCCTTGTTTGGATTCG+TGG + chr1.1:45672369-45672388 None:intergenic 40.0%
!! CATGCAAAGAAGGTGTCATT+TGG - chr1.1:45672625-45672644 MS.gene056878:CDS 40.0%
!! GGTGTCATTTGGAACATCAT+TGG - chr1.1:45672636-45672655 MS.gene056878:CDS 40.0%
!!! TCTTTTTTCTGATCTGCCAC+GGG + chr1.1:45671538-45671557 None:intergenic 40.0%
ACCAAATGGTCCTGAGAAGT+GGG - chr1.1:45670377-45670396 MS.gene056878:intron 45.0%
ACCTTGGAGATTAGAGGATC+AGG + chr1.1:45672250-45672269 None:intergenic 45.0%
AGAGGTCTCGAGTTCAAATG+TGG + chr1.1:45671016-45671035 None:intergenic 45.0%
ATGACACCTTCTTTGCATGG+AGG + chr1.1:45672624-45672643 None:intergenic 45.0%
CAGGATCACCCAAATTGTAG+AGG + chr1.1:45672231-45672250 None:intergenic 45.0%
CGTTTGCAGCATGCTCAAAT+GGG - chr1.1:45670415-45670434 MS.gene056878:intron 45.0%
CTAGCCAATGAGAATCGTGT+GGG - chr1.1:45672501-45672520 MS.gene056878:intron 45.0%
CTCTACATCAAACGTGCCAA+GGG + chr1.1:45672547-45672566 None:intergenic 45.0%
CTCTGCCTCATGTCTGTATT+TGG + chr1.1:45672155-45672174 None:intergenic 45.0%
CTTCTGTAAGGTGAACTAGG+TGG + chr1.1:45672180-45672199 None:intergenic 45.0%
GGTGTCTAGGTATCAGTGTT+GGG - chr1.1:45670722-45670741 MS.gene056878:intron 45.0%
TAGAGTTCCAGCACAATGCA+AGG - chr1.1:45672895-45672914 MS.gene056878:intron 45.0%
TCCTGATCCTCTAATCTCCA+AGG - chr1.1:45672246-45672265 MS.gene056878:CDS 45.0%
TCGTTTGCAGCATGCTCAAA+TGG - chr1.1:45670414-45670433 MS.gene056878:intron 45.0%
TGACACCTTCTTTGCATGGA+GGG + chr1.1:45672623-45672642 None:intergenic 45.0%
TTGGGAGAGAAGAAGAGAGA+GGG + chr1.1:45670967-45670986 None:intergenic 45.0%
TTTGAGCATGCTGCAAACGA+TGG + chr1.1:45670414-45670433 None:intergenic 45.0%
TTTGGGAGAGAAGAAGAGAG+AGG + chr1.1:45670968-45670987 None:intergenic 45.0%
! AAACGTGCCAAGGGCAATTT+TGG + chr1.1:45672538-45672557 None:intergenic 45.0%
!!! AATATTTTTTATATTTAACT+CGG - chr1.1:45671564-45671583 MS.gene056878:intron 5.0%
ACTACCCCTCCATGCAAAGA+AGG - chr1.1:45672615-45672634 MS.gene056878:CDS 50.0%
AGGCCACTTCAGCCATTGAA+TGG - chr1.1:45672915-45672934 MS.gene056878:CDS 50.0%
ATTGCTGTCCGGGATTCAGT+TGG + chr1.1:45671463-45671482 None:intergenic 50.0%
CCAAATGGTCCTGAGAAGTG+GGG - chr1.1:45670378-45670397 MS.gene056878:intron 50.0%
CCTCTACATCAAACGTGCCA+AGG + chr1.1:45672548-45672567 None:intergenic 50.0%
CCTTGGCACGTTTGATGTAG+AGG - chr1.1:45672545-45672564 MS.gene056878:intron 50.0%
CGACCATTCAATGGCTGAAG+TGG + chr1.1:45672921-45672940 None:intergenic 50.0%
CGGTGTCTAGGTATCAGTGT+TGG - chr1.1:45670721-45670740 MS.gene056878:intron 50.0%
GACACCTTCTTTGCATGGAG+GGG + chr1.1:45672622-45672641 None:intergenic 50.0%
GACCAAATGGTCCTGAGAAG+TGG - chr1.1:45670376-45670395 MS.gene056878:intron 50.0%
GCTAGCCAATGAGAATCGTG+TGG - chr1.1:45672500-45672519 MS.gene056878:intron 50.0%
GTGGCAGCCCTCTACAATTT+GGG - chr1.1:45672220-45672239 MS.gene056878:CDS 50.0%
GTTGCCCACACGATTCTCAT+TGG + chr1.1:45672508-45672527 None:intergenic 50.0%
TGTCCGGGATTCAGTTGGTT+GGG + chr1.1:45671458-45671477 None:intergenic 50.0%
TGTGGCAGCCCTCTACAATT+TGG - chr1.1:45672219-45672238 MS.gene056878:CDS 50.0%
! ATGCTGCAAACGATGGACTC+AGG + chr1.1:45670407-45670426 None:intergenic 50.0%
! GGAATAGAACTTTTGGCCCG+TGG - chr1.1:45671519-45671538 MS.gene056878:intron 50.0%
! TGCTGCAAACGATGGACTCA+GGG + chr1.1:45670406-45670425 None:intergenic 50.0%
! TGGGAAAGCACAAAGTCCAG+TGG - chr1.1:45670434-45670453 MS.gene056878:intron 50.0%
CCCCACTTCTCAGGACCATT+TGG + chr1.1:45670381-45670400 None:intergenic 55.0%
CGTCCCAACCAACTGAATCC+CGG - chr1.1:45671452-45671471 MS.gene056878:intron 55.0%
CTGTCCGGGATTCAGTTGGT+TGG + chr1.1:45671459-45671478 None:intergenic 55.0%
TGCTGGAACTCTACACCCAG+TGG + chr1.1:45672888-45672907 None:intergenic 55.0%
! GAAGTGGCCTTGCATTGTGC+TGG + chr1.1:45672905-45672924 None:intergenic 55.0%
AAGGTCCGGGGTTCAAACCC+CGG + chr1.1:45671417-45671436 None:intergenic 60.0%
CTCAGGGTTCCCCACTTCTC+AGG + chr1.1:45670390-45670409 None:intergenic 60.0%
GCATGCACCTGCAGAGCACA+GGG - chr1.1:45670901-45670920 MS.gene056878:CDS 60.0%
CCATGAGCCCTGTGCTCTGC+AGG + chr1.1:45670911-45670930 None:intergenic 65.0%
CCTGCAGAGCACAGGGCTCA+TGG - chr1.1:45670908-45670927 MS.gene056878:CDS 65.0%
GGCATGCACCTGCAGAGCAC+AGG - chr1.1:45670900-45670919 MS.gene056878:CDS 65.0%
CGTGGCCGGGGTTTGAACCC+CGG - chr1.1:45671409-45671428 MS.gene056878:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 45670146 45672971 45670146 ID=MS.gene056878
chr1.1 mRNA 45670146 45672971 45670146 ID=MS.gene056878.t1;Parent=MS.gene056878
chr1.1 exon 45672902 45672971 45672902 ID=MS.gene056878.t1.exon1;Parent=MS.gene056878.t1
chr1.1 CDS 45672902 45672971 45672902 ID=cds.MS.gene056878.t1;Parent=MS.gene056878.t1
chr1.1 exon 45672557 45672765 45672557 ID=MS.gene056878.t1.exon2;Parent=MS.gene056878.t1
chr1.1 CDS 45672557 45672765 45672557 ID=cds.MS.gene056878.t1;Parent=MS.gene056878.t1
chr1.1 exon 45672181 45672287 45672181 ID=MS.gene056878.t1.exon3;Parent=MS.gene056878.t1
chr1.1 CDS 45672181 45672287 45672181 ID=cds.MS.gene056878.t1;Parent=MS.gene056878.t1
chr1.1 exon 45670850 45670955 45670850 ID=MS.gene056878.t1.exon4;Parent=MS.gene056878.t1
chr1.1 CDS 45670850 45670955 45670850 ID=cds.MS.gene056878.t1;Parent=MS.gene056878.t1
chr1.1 exon 45670455 45670637 45670455 ID=MS.gene056878.t1.exon5;Parent=MS.gene056878.t1
chr1.1 CDS 45670455 45670637 45670455 ID=cds.MS.gene056878.t1;Parent=MS.gene056878.t1
chr1.1 exon 45670146 45670274 45670146 ID=MS.gene056878.t1.exon6;Parent=MS.gene056878.t1
chr1.1 CDS 45670146 45670274 45670146 ID=cds.MS.gene056878.t1;Parent=MS.gene056878.t1
Gene Sequence

>MS.gene056878

ATGGCTTTGCAGATTTACTTCTCAATTCTTCTTATTGCAACTTTGGCTCTATGCACTTCAGCAAATTATAGTAAGATTTCATTTTGCATTTATAATAACTTAATTTGATTTGCTTCATAGTACACCAAAATAATAGATGCAGTTGATTAAATTATATGTTATGATATGATGATTACTTGTTATGACTAAAGTTTTTTTTATGCTAGATTCGGTTAATTTTAGTTATATTGGACCAAATGGTCCTGAGAAGTGGGGAACCCTGAGTCCATCGTTTGCAGCATGCTCAAATGGGAAAGCACAAAGTCCAGTGGAACTTGTAATGAATGATATTGTCATGAACCAAGAATTGAAACCCTTAGACAGAAACTACGTTCCTACGAATGCCACACTTGTTAACAATCAATTCAACATTGGGGTATGTATGTTCATCAACTATACAAATCTCTTAAAAAGTGTAAAAATTGTGGTTACCCCATCATAACTATATACTACCGACACTTCAAATCGAATATGTATTTGATGTCAGACACGAGTCGATGCCAATCATTTCTACTTTTCAAATTATTATTATTAGTCGGTGTCTAGGTATCAGTGTTGGGTCTAATGTCTGTTACAAACAGAGTACACAAATTGTTAAGGAAAATGGTGATGTCAACTGATATGGTTGAGTCTGTTAAAATATAGGTACATTTTGAAGGAAAAGTTGGAGATATTAACATAAATGGAATGAATTACTCATTGAAACAACTTCATTGGCATGCACCTGCAGAGCACAGGGCTCATGGTCGTTTGTAAGTCCCCTTTCTTCTATATTTGTTCCCTCTCTCTTCTTCTCTCCCAAATCCCAATACATTCCTTTTCCGTTATCCACATTTGAACTCGAGACCTCTAATTCCTTTAATCCTTAATTCAAATTAGTTGATTTATTCAAACCCTCTAATTACTTTGGTTAAAAAATTATTATTGTGACTTTTAACAAGCAAACGAAGCTTCTTAAAAAAAACAAGCAAACGAAGTTTCATATCAAACTACAACTAAGAAAAATATACTGTCCCATGGAAAAGAAAAAAAAATTAAACTAGGAACATACTGTATTCTAAGTTTGTCGATGCAAAAAATGAAAAGTACTTCTTGGAATGACTTGGTGAAACATAAAACTTAAAAAATATTTGAACTTTACCATTTTCTCCCTCCAACCATAATTGTTATACCATTTAGACAACCATAATTGTTATAGCAATTACATCTATATTTTTTTTTTTTCGTGGCCGGGGTTTGAACCCCGGACCTTGCATATATTATACATCGTCCCAACCAACTGAATCCCGGACAGCAATTACATCTATCTATCTATAGAAAAATCTGCTTATTATGGAATAGAACTTTTGGCCCGTGGCAGATCAGAAAAAAGAAGGAACAATATTTTTTATATTTAACTCGGCATTTTTTATAAACAGAAAGAGGGGAATAAAACGTTTGGTCAGTACCTATTGATTATTGTGAAACTCATAATTTATATTTAAAAAAGCAGTATTATTTTTATAAAAAAATGTCAGATTCTATTGTTGCATTTTTTTTTAGAAGCCAAATGATGCTTATAAATATTTTATTATTTTACTATTAAAAAATGTCAAGAAATTGTTTTATATGGTAATTCAACAAAATATTTAAAGGATAGGAGGTAATTATTTTCTATATAACTTAATAGATCCTTTCAAACCATTTTTATTAGTCATGAAGCTTGATAATGACAACTTGAGGTAGATAATGTGACACATGTAGAACATAAGAGACACAATTTTTCTTTAGTTCCAGATTTTTGTCAAGGAATAAATTCTATTTTATCTTTTATTACCATATCGTATATTCTACATTTAATTTAATATATATTAGTACAAGGAATGGGATTCCATGCATTCTGATTTATTCTAGCCTACGCCTCTAATAAAAATCTATTTAACCCTTACAAATTACAATGTTAGTTATTAATCTTTGTACAAAATATTCCAAATACAGACATGAGGCAGAGCTCCACCTAGTTCACCTTACAGAAGATAACAATAACATAGCAGTTGTGGCAGCCCTCTACAATTTGGGTGATCCTGATCCTCTAATCTCCAAGGTAGAGTTATTTAAGTCACATTCACAACACCGTTCATATTTGATATCACGGTAAATTTGTCGAAGTCATGGCAATTCATCATGATTCTGTCAAATTTACCACGAATCCAAACAAGGATTACATGACTCAAGAGTCAAGACTATAAAGTGGTAAATGTAGAATTTATTATTTGGATAGTATAGCTACTAATTACATGTGGTTCTTGAATGCAGATTGAAGACAAGTTCTATGAGCTAGCCAATGAGAATCGTGTGGGCAACAAAGATGCCAAAATTGCCCTTGGCACGTTTGATGTAGAGGAAATAAATAAAAGGATCCATAGATATTATAGATATGTTGGCTCTCTCACTACCCCTCCATGCAAAGAAGGTGTCATTTGGAACATCATTGGCAAGGTACTAAGTTTAATCAGTTGGTTATGCGGTGATTGAAATTGATTTTGACCGAATTGGTTTTATAAACTTGATTTTACTAAAAGTGAATTAAATATAAAGTAATTTGTGTTTGGGCAGACTAATAATTTTTATTAATTTTTGCTTTTGGAAAAATTAATTTCTTACTTAATGAGCATGCAGGTTAGGACACTCTCCAAAGAACAACTAAAACTTTTAAAGGCACCACTGGGTGTAGAGTTCCAGCACAATGCAAGGCCACTTCAGCCATTGAATGGTCGCAAAATTGAGATGTACAACTACCACAAATAG

Protein sequence

>MS.gene056878.t1

MALQIYFSILLIATLALCTSANYNSVNFSYIGPNGPEKWGTLSPSFAACSNGKAQSPVELVMNDIVMNQELKPLDRNYVPTNATLVNNQFNIGVHFEGKVGDININGMNYSLKQLHWHAPAEHRAHGRLHEAELHLVHLTEDNNNIAVVAALYNLGDPDPLISKIEDKFYELANENRVGNKDAKIALGTFDVEEINKRIHRYYRYVGSLTTPPCKEGVIWNIIGKVRTLSKEQLKLLKAPLGVEFQHNARPLQPLNGRKIEMYNYHK