Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41620.t1 | RHN70044.1 | 95.9 | 583 | 22 | 2 | 1 | 581 | 72 | 654 | 1.40E-300 | 1041.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41620.t1 | A5YVF1 | 50.2 | 574 | 254 | 11 | 10 | 572 | 3 | 555 | 1.2e-148 | 528.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41620.t1 | G7J2Q1 | 95.9 | 583 | 22 | 2 | 1 | 581 | 1 | 583 | 1.0e-300 | 1041.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene41620 | 0.902233 | 1.19E-78 | -1.69E-46 |
| MS.gene050630 | MS.gene41620 | 0.821132 | 4.75E-53 | -1.69E-46 |
| MS.gene05157 | MS.gene41620 | 0.802557 | 5.30E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene41620 | 0.822998 | 1.75E-53 | -1.69E-46 |
| MS.gene053144 | MS.gene41620 | 0.857367 | 1.71E-62 | -1.69E-46 |
| MS.gene053174 | MS.gene41620 | 0.819701 | 1.01E-52 | -1.69E-46 |
| MS.gene054550 | MS.gene41620 | 0.822836 | 1.91E-53 | -1.69E-46 |
| MS.gene054584 | MS.gene41620 | 0.855809 | 4.92E-62 | -1.69E-46 |
| MS.gene055512 | MS.gene41620 | 0.813211 | 2.87E-51 | -1.69E-46 |
| MS.gene055890 | MS.gene41620 | 0.803307 | 3.71E-49 | -1.69E-46 |
| MS.gene055891 | MS.gene41620 | 0.807056 | 6.09E-50 | -1.69E-46 |
| MS.gene056228 | MS.gene41620 | 0.823714 | 1.19E-53 | -1.69E-46 |
| MS.gene056366 | MS.gene41620 | 0.807827 | 4.18E-50 | -1.69E-46 |
| MS.gene056553 | MS.gene41620 | 0.81649 | 5.38E-52 | -1.69E-46 |
| MS.gene059154 | MS.gene41620 | 0.862635 | 4.41E-64 | -1.69E-46 |
| MS.gene060194 | MS.gene41620 | 0.801638 | 8.19E-49 | -1.69E-46 |
| MS.gene060587 | MS.gene41620 | 0.815896 | 7.31E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41620.t1 | MTR_3g098260 | 97.427 | 583 | 13 | 2 | 1 | 581 | 1 | 583 | 0.0 | 1184 |
| MS.gene41620.t1 | MTR_3g098240 | 80.274 | 583 | 110 | 4 | 1 | 581 | 1 | 580 | 0.0 | 892 |
| MS.gene41620.t1 | MTR_2g007690 | 53.281 | 381 | 149 | 3 | 176 | 556 | 189 | 540 | 1.47e-129 | 393 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41620.t1 | AT5G23570 | 54.367 | 561 | 228 | 12 | 28 | 578 | 18 | 560 | 0.0 | 555 |
| MS.gene41620.t1 | AT5G23570 | 54.367 | 561 | 228 | 12 | 28 | 578 | 18 | 560 | 0.0 | 555 |
| MS.gene41620.t1 | AT5G23570 | 56.375 | 502 | 194 | 11 | 28 | 522 | 18 | 501 | 8.47e-178 | 512 |
| MS.gene41620.t1 | AT5G23570 | 56.375 | 502 | 194 | 11 | 28 | 522 | 18 | 501 | 8.47e-178 | 512 |
Find 171 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCACTCATTTGTCGAATT+TGG | 0.126725 | 3.4:+88210148 | None:intergenic |
| TTGAGCCAGCTGCTCAGTTT+TGG | 0.227402 | 3.4:+88211731 | None:intergenic |
| CGTTCCTCCTCTGCATTTGC+AGG | 0.237429 | 3.4:+88208972 | None:intergenic |
| CATTGTCTTTCGCAGCTTCT+CGG | 0.262638 | 3.4:+88210038 | None:intergenic |
| CTGGGGAAGCATTTGGTAAA+TGG | 0.288604 | 3.4:-88210924 | MS.gene41620:CDS |
| AAAGGGCCTACCACCTCTTC+TGG | 0.303128 | 3.4:+88211812 | None:intergenic |
| TAGTCAGGTTATCCAAATTC+TGG | 0.305878 | 3.4:+88211148 | None:intergenic |
| CAGCCAGCCACTGGTGGATA+TGG | 0.307074 | 3.4:-88211435 | MS.gene41620:CDS |
| CATATCCACCAGTGGCTGGC+TGG | 0.313166 | 3.4:+88211436 | None:intergenic |
| GGCTGGAGGACCCCGCTGTT+TGG | 0.326991 | 3.4:+88211611 | None:intergenic |
| CTCTACAGGGTGGCTGGAAC+TGG | 0.336380 | 3.4:-88211380 | MS.gene41620:CDS |
| CTAAAACAAAGGGTTCAAAA+AGG | 0.344221 | 3.4:-88211020 | MS.gene41620:CDS |
| CATCATTCCTCCTCCTCTAC+AGG | 0.356057 | 3.4:-88211394 | MS.gene41620:CDS |
| TGTTTGGCCTCCAATGGTTA+TGG | 0.357696 | 3.4:-88210866 | MS.gene41620:CDS |
| AAAAGGATCATGAAATTGTT+TGG | 0.358611 | 3.4:-88210882 | MS.gene41620:CDS |
| AGCCTCAGCTAGTGGTTATC+TGG | 0.359386 | 3.4:-88210533 | MS.gene41620:CDS |
| GGTGGCAATCGACAGCTCTT+TGG | 0.361150 | 3.4:-88210418 | MS.gene41620:CDS |
| TTGATGAGGAATTGCGTAGA+AGG | 0.372096 | 3.4:-88210966 | MS.gene41620:CDS |
| ATATCCACCAGTGGCTGGCT+GGG | 0.390269 | 3.4:+88211437 | None:intergenic |
| CCAGCTTGTCAAGGTGGTCC+TGG | 0.394071 | 3.4:-88211087 | MS.gene41620:CDS |
| AAAGCTCTTGAGGAATCCTT+TGG | 0.402884 | 3.4:-88210069 | MS.gene41620:CDS |
| CTCCTCCTCTACAGGGTGGC+TGG | 0.406525 | 3.4:-88211386 | MS.gene41620:CDS |
| GGACAGTGCCACTGTCTCTC+TGG | 0.414276 | 3.4:+88211108 | None:intergenic |
| TTTGGTGCACTACCATTTCC+TGG | 0.415937 | 3.4:+88210166 | None:intergenic |
| CATTTATCTGATCAATAGTC+AGG | 0.417399 | 3.4:+88211133 | None:intergenic |
| GCTGATGTTAACTTAGGATC+TGG | 0.419420 | 3.4:-88211702 | MS.gene41620:CDS |
| ACCAGCATTTGGTGTCTGCC+AGG | 0.423154 | 3.4:+88211494 | None:intergenic |
| TGCTCTTCTTCCGTGTCTCA+TGG | 0.423168 | 3.4:+88211190 | None:intergenic |
| TCTTCAAATAAAGAAGTTGC+TGG | 0.427490 | 3.4:+88210121 | None:intergenic |
| GGTATTGCTGATGTTAACTT+AGG | 0.436214 | 3.4:-88211708 | MS.gene41620:CDS |
| TTATCTGGAGGCAGAACGTC+TGG | 0.438026 | 3.4:-88210518 | MS.gene41620:CDS |
| TCATTGCCAGCCGCAGTAAA+GGG | 0.438140 | 3.4:+88211795 | None:intergenic |
| GGAGAAACAAATTGTATCTT+CGG | 0.438156 | 3.4:+88210443 | None:intergenic |
| GGAGGACGACTGTGATGATC+TGG | 0.438994 | 3.4:-88211271 | MS.gene41620:CDS |
| TTACCAAATGCTTCCCCAGC+TGG | 0.441325 | 3.4:+88210928 | None:intergenic |
| TGCAGATGTGGCTCAAAAGC+AGG | 0.443416 | 3.4:-88211559 | MS.gene41620:CDS |
| ATCATTGCCAGCCGCAGTAA+AGG | 0.443416 | 3.4:+88211794 | None:intergenic |
| GTTTATTTAGTGGACAGGTA+TGG | 0.443972 | 3.4:-88210659 | MS.gene41620:intron |
| GTCCCAGCTGGGGAAGCATT+TGG | 0.446522 | 3.4:-88210931 | MS.gene41620:CDS |
| TTCTTCTGTTCAAACTCCTC+TGG | 0.450708 | 3.4:+88211327 | None:intergenic |
| GTAAGAGCACGGCATTCATA+TGG | 0.457091 | 3.4:-88210595 | MS.gene41620:CDS |
| GAGTTTGAACAGAAGAATGA+TGG | 0.460624 | 3.4:-88211321 | MS.gene41620:CDS |
| TATCCACCAGTGGCTGGCTG+GGG | 0.464606 | 3.4:+88211438 | None:intergenic |
| AAGCGGTGCTGCCAAACAGC+GGG | 0.465469 | 3.4:-88211622 | MS.gene41620:CDS |
| AGTGGAGCTGGAAGAGCTGC+TGG | 0.466783 | 3.4:-88211522 | MS.gene41620:CDS |
| AGATGATGATGATGAGGAGG+AGG | 0.470515 | 3.4:-88211292 | MS.gene41620:CDS |
| GGTAGGCCCTTTACTGCGGC+TGG | 0.471031 | 3.4:-88211801 | MS.gene41620:CDS |
| ACGACCTGGAGGCTTTCAAC+AGG | 0.471763 | 3.4:-88210378 | MS.gene41620:CDS |
| CTGTAGAGGAGGAGGAATGA+TGG | 0.473766 | 3.4:+88211395 | None:intergenic |
| AGGTTTAAAAGAAGAAGAAA+AGG | 0.475660 | 3.4:-88210899 | MS.gene41620:CDS |
| TCTGCATTTCCCCATGCTCT+AGG | 0.476420 | 3.4:+88211576 | None:intergenic |
| ATGAATCATGCTAAAACAAA+GGG | 0.476704 | 3.4:-88211030 | MS.gene41620:CDS |
| TTTATTTAGTGGACAGGTAT+GGG | 0.478428 | 3.4:-88210658 | MS.gene41620:intron |
| AATGAGGTCCTACCAGGAAA+TGG | 0.480977 | 3.4:-88210178 | MS.gene41620:CDS |
| CTGGACAGGATGATGGGCCA+TGG | 0.483734 | 3.4:-88211683 | MS.gene41620:CDS |
| TGATGATGATGAGGAGGAGG+AGG | 0.491800 | 3.4:-88211289 | MS.gene41620:CDS |
| TAAAATAGTCAAGAAGCTCT+TGG | 0.493762 | 3.4:+88210632 | None:intergenic |
| TGAACAAGAACGATTCTTCA+AGG | 0.493855 | 3.4:-88209096 | MS.gene41620:CDS |
| GGCACTACAGTAGTCCCAGC+TGG | 0.494847 | 3.4:-88210943 | MS.gene41620:CDS |
| TTAGGATCTGGACAGGATGA+TGG | 0.494954 | 3.4:-88211690 | MS.gene41620:CDS |
| GAAGAGCTGCTGGAAACCCC+TGG | 0.495073 | 3.4:-88211512 | MS.gene41620:CDS |
| GGTCTCATATAACCAGCATT+TGG | 0.496607 | 3.4:+88211483 | None:intergenic |
| TGAACAAGATGAAAATGATA+AGG | 0.498263 | 3.4:-88210827 | MS.gene41620:intron |
| GGAAGGCCCCAGCCAGCCAC+TGG | 0.498896 | 3.4:-88211444 | MS.gene41620:CDS |
| TGATCCCAAAACTGAGCAGC+TGG | 0.500326 | 3.4:-88211736 | MS.gene41620:CDS |
| CTTCCATTGCCTCTACCAGC+GGG | 0.500451 | 3.4:+88211462 | None:intergenic |
| CCAGCATTTGGTGTCTGCCA+GGG | 0.501741 | 3.4:+88211495 | None:intergenic |
| GATGAATCATGCTAAAACAA+AGG | 0.503073 | 3.4:-88211031 | MS.gene41620:CDS |
| GTGCACTACCATTTCCTGGT+AGG | 0.512382 | 3.4:+88210170 | None:intergenic |
| TGCTCTAGGATTAGAACCAT+GGG | 0.512421 | 3.4:+88211590 | None:intergenic |
| TGAAATTGTTTGGCCTCCAA+TGG | 0.515700 | 3.4:-88210872 | MS.gene41620:CDS |
| CAGCATTTGGTGTCTGCCAG+GGG | 0.520729 | 3.4:+88211496 | None:intergenic |
| AGAAGATGATGATGATGAGG+AGG | 0.521336 | 3.4:-88211295 | MS.gene41620:CDS |
| ATCATTCCTCCTCCTCTACA+GGG | 0.524207 | 3.4:-88211393 | MS.gene41620:CDS |
| TATCCATATCCACCAGTGGC+TGG | 0.525777 | 3.4:+88211432 | None:intergenic |
| TAAAAGAAATGCAAAGGAAG+AGG | 0.526529 | 3.4:-88209051 | MS.gene41620:CDS |
| CCAGGACCACCTTGACAAGC+TGG | 0.529466 | 3.4:+88211087 | None:intergenic |
| AGATACAATTTGTTTCTCCC+TGG | 0.529912 | 3.4:-88210439 | MS.gene41620:CDS |
| TCGACAGCTCTTTGGATACA+TGG | 0.530084 | 3.4:-88210410 | MS.gene41620:CDS |
| TCATCCCTCGATGACCTTGA+GGG | 0.531293 | 3.4:+88210572 | None:intergenic |
| GAAACATTCAAAAGCTCTTG+AGG | 0.531663 | 3.4:-88210079 | MS.gene41620:CDS |
| TGATGAGGAATTGCGTAGAA+GGG | 0.533128 | 3.4:-88210965 | MS.gene41620:CDS |
| TACAATTTGTTTCTCCCTGG+TGG | 0.533325 | 3.4:-88210436 | MS.gene41620:CDS |
| TATATGAGACCCGCTGGTAG+AGG | 0.535877 | 3.4:-88211471 | MS.gene41620:CDS |
| TTCTTTGAATAAGTCTCCCA+TGG | 0.536917 | 3.4:+88211666 | None:intergenic |
| TCTTTATTTGAAGAACAAGA+TGG | 0.537740 | 3.4:-88210112 | MS.gene41620:CDS |
| GAAGCATTTGGTAAATGGAA+AGG | 0.538253 | 3.4:-88210919 | MS.gene41620:CDS |
| TACCAAATGCTTCCCCAGCT+GGG | 0.538618 | 3.4:+88210929 | None:intergenic |
| AGACACGGAAGAAGAGCAAA+TGG | 0.539757 | 3.4:-88211185 | MS.gene41620:CDS |
| GTGGTCCTGGTGCTATTGAT+TGG | 0.540649 | 3.4:-88211074 | MS.gene41620:CDS |
| GTATGAAATGAGGTCCTACC+AGG | 0.541290 | 3.4:-88210184 | MS.gene41620:CDS |
| AAGAGCTGTCGATTGCCACC+AGG | 0.541548 | 3.4:+88210421 | None:intergenic |
| AGGCCCCAGCCAGCCACTGG+TGG | 0.541602 | 3.4:-88211441 | MS.gene41620:CDS |
| CGAGAAGCTGCGAAAGACAA+TGG | 0.543259 | 3.4:-88210037 | MS.gene41620:CDS |
| TGGTTCTAATCCTAGAGCAT+GGG | 0.547173 | 3.4:-88211586 | MS.gene41620:CDS |
| AAGGTGAAGAAGACAACTAC+TGG | 0.547743 | 3.4:-88208996 | MS.gene41620:CDS |
| GCACTACAGTAGTCCCAGCT+GGG | 0.548415 | 3.4:-88210942 | MS.gene41620:CDS |
| CCTTCCATTGCCTCTACCAG+CGG | 0.549092 | 3.4:+88211461 | None:intergenic |
| AGACCCGCTGGTAGAGGCAA+TGG | 0.549173 | 3.4:-88211465 | MS.gene41620:CDS |
| CAGCCACCCTGTAGAGGAGG+AGG | 0.549991 | 3.4:+88211387 | None:intergenic |
| CACTGTCCAGCTTGTCAAGG+TGG | 0.550353 | 3.4:-88211093 | MS.gene41620:CDS |
| CGGCATTCATATGGCCCTCA+AGG | 0.550943 | 3.4:-88210586 | MS.gene41620:CDS |
| GTGTGGAATAACAGTGGAGC+TGG | 0.554023 | 3.4:-88211534 | MS.gene41620:CDS |
| TTCTGAACCATAACCATTGG+AGG | 0.554853 | 3.4:+88210859 | None:intergenic |
| TAGGATCTGGACAGGATGAT+GGG | 0.555294 | 3.4:-88211689 | MS.gene41620:CDS |
| CCCTGGCAGACACCAAATGC+TGG | 0.558318 | 3.4:-88211495 | MS.gene41620:CDS |
| CTAGGATTAGAACCATGGGC+TGG | 0.560267 | 3.4:+88211594 | None:intergenic |
| TGTAGAGGAGGAGGAATGAT+GGG | 0.560314 | 3.4:+88211396 | None:intergenic |
| AAGGAACTAATAGAGAAGCT+TGG | 0.563248 | 3.4:-88210477 | MS.gene41620:CDS |
| AATGAGTGATGAATATGATT+CGG | 0.563280 | 3.4:-88211229 | MS.gene41620:CDS |
| ATGGTTCTAATCCTAGAGCA+TGG | 0.563469 | 3.4:-88211587 | MS.gene41620:CDS |
| TTCCAGCCACCCTGTAGAGG+AGG | 0.563976 | 3.4:+88211384 | None:intergenic |
| CTGCAAATGCAGAGGAGGAA+CGG | 0.564181 | 3.4:-88208971 | MS.gene41620:CDS |
| AAAACTGAGCAGCTGGCTCA+AGG | 0.565606 | 3.4:-88211729 | MS.gene41620:CDS |
| GTCAAAAGAGCCATGAGACA+CGG | 0.572339 | 3.4:-88211200 | MS.gene41620:CDS |
| TGGACAGGATGATGGGCCAT+GGG | 0.572470 | 3.4:-88211682 | MS.gene41620:CDS |
| ATGTTTGAAGCCTCAGCTAG+TGG | 0.573694 | 3.4:-88210541 | MS.gene41620:CDS |
| CAGTTCCAGCCACCCTGTAG+AGG | 0.573745 | 3.4:+88211381 | None:intergenic |
| CAGCGGGGTCCTCCAGCCCA+TGG | 0.574927 | 3.4:-88211606 | MS.gene41620:CDS |
| ATGCTCTAGGATTAGAACCA+TGG | 0.578614 | 3.4:+88211589 | None:intergenic |
| GCTGGTTATATGAGACCCGC+TGG | 0.578960 | 3.4:-88211477 | MS.gene41620:CDS |
| GCATGAAGAAATAAAAGAAG+AGG | 0.582341 | 3.4:-88209977 | MS.gene41620:intron |
| AATGCCTGTTGAAAGCCTCC+AGG | 0.589670 | 3.4:+88210374 | None:intergenic |
| CCACGATAAAAGAAATGCAA+AGG | 0.589885 | 3.4:-88209057 | MS.gene41620:CDS |
| GCAGCAGGAAGAGCGTGAGA+AGG | 0.590681 | 3.4:-88209015 | MS.gene41620:CDS |
| AGAAGAAGATGATGATGATG+AGG | 0.592779 | 3.4:-88211298 | MS.gene41620:CDS |
| GGTGCTATTGATTGGTACAG+AGG | 0.593628 | 3.4:-88211066 | MS.gene41620:CDS |
| TGTTAACTTAGGATCTGGAC+AGG | 0.593990 | 3.4:-88211697 | MS.gene41620:CDS |
| GCAGATGTGGCTCAAAAGCA+GGG | 0.600056 | 3.4:-88211558 | MS.gene41620:CDS |
| GCTTTCAACAGGCATTGCCA+AGG | 0.605892 | 3.4:-88210367 | MS.gene41620:intron |
| CTGTACCAATCAATAGCACC+AGG | 0.608472 | 3.4:+88211069 | None:intergenic |
| AGAGCTGTCGATTGCCACCA+GGG | 0.611123 | 3.4:+88210422 | None:intergenic |
| TGGCACTGTCCAGCTTGTCA+AGG | 0.612358 | 3.4:-88211096 | MS.gene41620:CDS |
| AGAATGAGTTCCAGAAGAGG+TGG | 0.612845 | 3.4:-88211822 | MS.gene41620:CDS |
| CATGGCAACTAAAGACGACC+TGG | 0.613162 | 3.4:-88210392 | MS.gene41620:CDS |
| TGGTCCTGCAAATGCAGAGG+AGG | 0.614122 | 3.4:-88208976 | MS.gene41620:CDS |
| CCGCTGGTAGAGGCAATGGA+AGG | 0.614168 | 3.4:-88211461 | MS.gene41620:CDS |
| CAAGACTCAAGTATGAAATG+AGG | 0.614242 | 3.4:-88210194 | MS.gene41620:CDS |
| GAAGCGGTGCTGCCAAACAG+CGG | 0.614252 | 3.4:-88211623 | MS.gene41620:CDS |
| TGGCTCAAAAGCAGGGCGTG+TGG | 0.616563 | 3.4:-88211551 | MS.gene41620:CDS |
| GCTTGCTGTACTTCTTGATG+AGG | 0.619881 | 3.4:-88210980 | MS.gene41620:CDS |
| CTCATCCCTCGATGACCTTG+AGG | 0.620639 | 3.4:+88210571 | None:intergenic |
| CTTATGCGGCAGTAAGAGCA+CGG | 0.623295 | 3.4:-88210606 | MS.gene41620:CDS |
| GGATTAGAACCATGGGCTGG+AGG | 0.624835 | 3.4:+88211597 | None:intergenic |
| CTTCTCGGTCACTATACCAA+AGG | 0.627323 | 3.4:+88210053 | None:intergenic |
| GATGAGGAATTGCGTAGAAG+GGG | 0.628195 | 3.4:-88210964 | MS.gene41620:CDS |
| ATGGCCCTCAAGGTCATCGA+GGG | 0.629112 | 3.4:-88210576 | MS.gene41620:CDS |
| TGAGTTCCAGAAGAGGTGGT+AGG | 0.629926 | 3.4:-88211818 | MS.gene41620:CDS |
| GTGTTCTGAACCATAACCAT+TGG | 0.630457 | 3.4:+88210856 | None:intergenic |
| ACTGGAAATCAACTCATGCA+AGG | 0.631690 | 3.4:-88211362 | MS.gene41620:CDS |
| TACTGGTCCTGCAAATGCAG+AGG | 0.631949 | 3.4:-88208979 | MS.gene41620:CDS |
| AAGGAATGAAATTGTACCAG+AGG | 0.635504 | 3.4:-88211343 | MS.gene41620:CDS |
| CTCAGCTAGTGGTTATCTGG+AGG | 0.635751 | 3.4:-88210530 | MS.gene41620:CDS |
| AGCATGGGGAAATGCAGATG+TGG | 0.639900 | 3.4:-88211571 | MS.gene41620:CDS |
| AAGAACGATTCTTCAAGGAA+CGG | 0.640239 | 3.4:-88209091 | MS.gene41620:CDS |
| TGGAGGAGAATCGCATTGTG+AGG | 0.644382 | 3.4:-88210017 | MS.gene41620:CDS |
| CTCCAGATAACCACTAGCTG+AGG | 0.645712 | 3.4:+88210531 | None:intergenic |
| GGTTCTAATCCTAGAGCATG+GGG | 0.649486 | 3.4:-88211585 | MS.gene41620:CDS |
| AGGAGAATCGCATTGTGAGG+CGG | 0.658078 | 3.4:-88210014 | MS.gene41620:CDS |
| TAAATGAACCAGAGAGACAG+TGG | 0.663976 | 3.4:-88211116 | MS.gene41620:CDS |
| ACAAGAATGAGTTCCAGAAG+AGG | 0.668165 | 3.4:-88211825 | None:intergenic |
| CACTACAGTAGTCCCAGCTG+GGG | 0.668801 | 3.4:-88210941 | MS.gene41620:CDS |
| CACATATCCATATCCACCAG+TGG | 0.671256 | 3.4:+88211428 | None:intergenic |
| ATTCCTCCTCCTCTACAGGG+TGG | 0.683487 | 3.4:-88211390 | MS.gene41620:CDS |
| CCAAATTCGACAAATGAGTG+AGG | 0.699862 | 3.4:-88210148 | MS.gene41620:CDS |
| CAGGGCGTGTGGAATAACAG+TGG | 0.701316 | 3.4:-88211540 | MS.gene41620:CDS |
| AGCGGTGCTGCCAAACAGCG+GGG | 0.701494 | 3.4:-88211621 | MS.gene41620:CDS |
| GAAGCTGCGAAAGACAATGG+AGG | 0.702107 | 3.4:-88210034 | MS.gene41620:CDS |
| GGCAACTAAAGACGACCTGG+AGG | 0.707545 | 3.4:-88210389 | MS.gene41620:CDS |
| AGGTGGTAGGCCCTTTACTG+CGG | 0.711949 | 3.4:-88211805 | MS.gene41620:CDS |
| TATGGCCCTCAAGGTCATCG+AGG | 0.715301 | 3.4:-88210577 | MS.gene41620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGTTTACTAATAAGAAT+AGG | + | chr3.4:88211170-88211189 | None:intergenic | 15.0% |
| !! | GATAAATGTCAATATATTAT+GGG | + | chr3.4:88211222-88211241 | None:intergenic | 15.0% |
| !! | TTTGTTTACTAATAAGAATA+GGG | + | chr3.4:88211169-88211188 | None:intergenic | 15.0% |
| !!! | ATTTTGTTTTGTTTATTTAG+TGG | - | chr3.4:88210091-88210110 | MS.gene41620:CDS | 15.0% |
| !! | ACTTTATAATAAACACAAAC+TGG | + | chr3.4:88211437-88211456 | None:intergenic | 20.0% |
| !! | GATTTATAATAAACACAAAC+TGG | + | chr3.4:88211357-88211376 | None:intergenic | 20.0% |
| !! | GGATAAATGTCAATATATTA+TGG | + | chr3.4:88211223-88211242 | None:intergenic | 20.0% |
| !! | TCTTTATACTTTCACTATTT+AGG | - | chr3.4:88210440-88210459 | MS.gene41620:CDS | 20.0% |
| !! | TTGTTTACTAATAAGAATAG+GGG | + | chr3.4:88211168-88211187 | None:intergenic | 20.0% |
| !!! | TTTTGTTAATTTTGCAAAGT+TGG | - | chr3.4:88211521-88211540 | MS.gene41620:CDS | 20.0% |
| ! | AAAAGGATCATGAAATTGTT+TGG | - | chr3.4:88209878-88209897 | MS.gene41620:intron | 25.0% |
| ! | AATGAGTGATGAATATGATT+CGG | - | chr3.4:88209531-88209550 | MS.gene41620:intron | 25.0% |
| ! | AGGTTTAAAAGAAGAAGAAA+AGG | - | chr3.4:88209861-88209880 | MS.gene41620:intron | 25.0% |
| ! | ATATATTGACATTTATCCAG+AGG | - | chr3.4:88211225-88211244 | MS.gene41620:CDS | 25.0% |
| ! | ATATTTGTGTAGTTCATGAA+TGG | - | chr3.4:88210959-88210978 | MS.gene41620:CDS | 25.0% |
| ! | ATGAATCATGCTAAAACAAA+GGG | - | chr3.4:88209730-88209749 | MS.gene41620:intron | 25.0% |
| ! | CAAGAGAAAAGAGATAAAAT+GGG | + | chr3.4:88211490-88211509 | None:intergenic | 25.0% |
| ! | TAAAACAAAGGGTTCAAAAA+GGG | - | chr3.4:88209741-88209760 | MS.gene41620:intron | 25.0% |
| ! | TCAAGAGAAAAGAGATAAAA+TGG | + | chr3.4:88211491-88211510 | None:intergenic | 25.0% |
| ! | TCTTAGAAAGATTTGGATTT+GGG | - | chr3.4:88211282-88211301 | MS.gene41620:CDS | 25.0% |
| ! | TGAACAAGATGAAAATGATA+AGG | - | chr3.4:88209933-88209952 | MS.gene41620:intron | 25.0% |
| ! | TGTCCGTATAAAATTATTTG+CGG | - | chr3.4:88210869-88210888 | MS.gene41620:CDS | 25.0% |
| !! | TCTTTATTTGAAGAACAAGA+TGG | - | chr3.4:88210648-88210667 | MS.gene41620:CDS | 25.0% |
| !! | TGTCCGCAAATAATTTTATA+CGG | + | chr3.4:88210875-88210894 | None:intergenic | 25.0% |
| AATGTCAATATATTATGGGC+TGG | + | chr3.4:88211218-88211237 | None:intergenic | 30.0% | |
| ACTAATAAGAATAGGGGAAA+AGG | + | chr3.4:88211162-88211181 | None:intergenic | 30.0% | |
| AGAATCAGATTAAAAGAGAG+AGG | + | chr3.4:88210536-88210555 | None:intergenic | 30.0% | |
| ATACTTTACTTCCATCATTC+TGG | + | chr3.4:88210500-88210519 | None:intergenic | 30.0% | |
| CAAAAAGTTCTTCCAGAATT+TGG | - | chr3.4:88209600-88209619 | MS.gene41620:intron | 30.0% | |
| CACATTACTTGAAGCATATT+AGG | - | chr3.4:88210822-88210841 | MS.gene41620:intron | 30.0% | |
| CATTTATCTGATCAATAGTC+AGG | + | chr3.4:88209630-88209649 | None:intergenic | 30.0% | |
| CTAAAACAAAGGGTTCAAAA+AGG | - | chr3.4:88209740-88209759 | MS.gene41620:intron | 30.0% | |
| GATGAATCATGCTAAAACAA+AGG | - | chr3.4:88209729-88209748 | MS.gene41620:intron | 30.0% | |
| GCATGAAGAAATAAAAGAAG+AGG | - | chr3.4:88210783-88210802 | MS.gene41620:intron | 30.0% | |
| GGAGAAACAAATTGTATCTT+CGG | + | chr3.4:88210320-88210339 | None:intergenic | 30.0% | |
| GTAAACAAATCAATGAGCAA+TGG | - | chr3.4:88211180-88211199 | MS.gene41620:CDS | 30.0% | |
| GTCTTAGAAAGATTTGGATT+TGG | - | chr3.4:88211281-88211300 | MS.gene41620:CDS | 30.0% | |
| TAAAAGAAATGCAAAGGAAG+AGG | - | chr3.4:88211709-88211728 | MS.gene41620:CDS | 30.0% | |
| TAAAATAGTCAAGAAGCTCT+TGG | + | chr3.4:88210131-88210150 | None:intergenic | 30.0% | |
| TCAAAGAAATCGAAAAACAG+AGG | - | chr3.4:88209109-88209128 | MS.gene41620:intron | 30.0% | |
| TCTTCAAATAAAGAAGTTGC+TGG | + | chr3.4:88210642-88210661 | None:intergenic | 30.0% | |
| TTAAGACAAGAAACCCATAA+GGG | + | chr3.4:88211564-88211583 | None:intergenic | 30.0% | |
| ! | AATGATGATTTTCAGTCCAA+GGG | - | chr3.4:88208983-88209002 | MS.gene41620:CDS | 30.0% |
| ! | ATCAAGTTTGAGTTAGGATA+TGG | - | chr3.4:88210895-88210914 | MS.gene41620:CDS | 30.0% |
| ! | CTCTTTTAATCTGATTCTGT+AGG | - | chr3.4:88210538-88210557 | MS.gene41620:CDS | 30.0% |
| ! | TTCTTATTTGCATCAAATGC+TGG | - | chr3.4:88209967-88209986 | MS.gene41620:intron | 30.0% |
| ! | TTTAAGACAAGAAACCCATA+AGG | + | chr3.4:88211565-88211584 | None:intergenic | 30.0% |
| ! | TTTATTTAGTGGACAGGTAT+GGG | - | chr3.4:88210102-88210121 | MS.gene41620:CDS | 30.0% |
| !! | GTACTTATGTTTTGTTGTAG+AGG | - | chr3.4:88211309-88211328 | MS.gene41620:CDS | 30.0% |
| !!! | GTTTTGTTTATTTAGTGGAC+AGG | - | chr3.4:88210096-88210115 | MS.gene41620:CDS | 30.0% |
| !!! | TGACTATTTTAGCTCTTATG+CGG | - | chr3.4:88210140-88210159 | MS.gene41620:CDS | 30.0% |
| !!! | TGTTTTAGCATGATTCATCA+GGG | + | chr3.4:88209728-88209747 | None:intergenic | 30.0% |
| !!! | TTGTTTTAGCATGATTCATC+AGG | + | chr3.4:88209729-88209748 | None:intergenic | 30.0% |
| AAGAAATCGAAAAACAGAGG+TGG | - | chr3.4:88209112-88209131 | MS.gene41620:intron | 35.0% | |
| AAGAACGATTCTTCAAGGAA+CGG | - | chr3.4:88211669-88211688 | MS.gene41620:CDS | 35.0% | |
| AAGGAACTAATAGAGAAGCT+TGG | - | chr3.4:88210283-88210302 | MS.gene41620:intron | 35.0% | |
| AAGGAATGAAATTGTACCAG+AGG | - | chr3.4:88209417-88209436 | MS.gene41620:intron | 35.0% | |
| ACATCTTCCATCAAGTAACA+GGG | + | chr3.4:88211643-88211662 | None:intergenic | 35.0% | |
| ACTAAATCCAGCAATGTTCT+AGG | + | chr3.4:88210060-88210079 | None:intergenic | 35.0% | |
| AGCAGAGTCTTAGAAAGATT+TGG | - | chr3.4:88211275-88211294 | MS.gene41620:CDS | 35.0% | |
| CAAGACTCAAGTATGAAATG+AGG | - | chr3.4:88210566-88210585 | MS.gene41620:CDS | 35.0% | |
| CCACGATAAAAGAAATGCAA+AGG | - | chr3.4:88211703-88211722 | MS.gene41620:CDS | 35.0% | |
| GAAACATTCAAAAGCTCTTG+AGG | - | chr3.4:88210681-88210700 | MS.gene41620:intron | 35.0% | |
| GAGTTTGAACAGAAGAATGA+TGG | - | chr3.4:88209439-88209458 | MS.gene41620:intron | 35.0% | |
| GGTATTGCTGATGTTAACTT+AGG | - | chr3.4:88209052-88209071 | MS.gene41620:CDS | 35.0% | |
| TAACAATCCTAGAACATTGC+TGG | - | chr3.4:88210050-88210069 | MS.gene41620:CDS | 35.0% | |
| TAACTGAAGAGAATGAACCT+TGG | + | chr3.4:88210413-88210432 | None:intergenic | 35.0% | |
| TACATCTTCCATCAAGTAAC+AGG | + | chr3.4:88211644-88211663 | None:intergenic | 35.0% | |
| TAGTCAGGTTATCCAAATTC+TGG | + | chr3.4:88209615-88209634 | None:intergenic | 35.0% | |
| TGAACAAGAACGATTCTTCA+AGG | - | chr3.4:88211664-88211683 | MS.gene41620:CDS | 35.0% | |
| TGCAGCATCTAAACATTTCA+TGG | + | chr3.4:88211136-88211155 | None:intergenic | 35.0% | |
| TTCTTTGAATAAGTCTCCCA+TGG | + | chr3.4:88209097-88209116 | None:intergenic | 35.0% | |
| ! | AGAAGAAGATGATGATGATG+AGG | - | chr3.4:88209462-88209481 | MS.gene41620:intron | 35.0% |
| ! | AGATACAATTTGTTTCTCCC+TGG | - | chr3.4:88210321-88210340 | MS.gene41620:intron | 35.0% |
| ! | CAATGATGATTTTCAGTCCA+AGG | - | chr3.4:88208982-88209001 | MS.gene41620:CDS | 35.0% |
| ! | CACACAAATCACATTTTTGC+AGG | + | chr3.4:88211042-88211061 | None:intergenic | 35.0% |
| ! | CCTTTGCATTTCTTTTATCG+TGG | + | chr3.4:88211706-88211725 | None:intergenic | 35.0% |
| ! | GAAGCATTTGGTAAATGGAA+AGG | - | chr3.4:88209841-88209860 | MS.gene41620:intron | 35.0% |
| ! | GTTTATTTAGTGGACAGGTA+TGG | - | chr3.4:88210101-88210120 | MS.gene41620:CDS | 35.0% |
| !! | GTTTTAGCATGATTCATCAG+GGG | + | chr3.4:88209727-88209746 | None:intergenic | 35.0% |
| AAAAAGGGTGAAGGTTCACA+GGG | - | chr3.4:88209756-88209775 | MS.gene41620:intron | 40.0% | |
| AAAGCTCTTGAGGAATCCTT+TGG | - | chr3.4:88210691-88210710 | MS.gene41620:intron | 40.0% | |
| AAAGGGTTCAAAAAGGGTGA+AGG | - | chr3.4:88209747-88209766 | MS.gene41620:intron | 40.0% | |
| AAATCGAAAAACAGAGGTGG+TGG | - | chr3.4:88209115-88209134 | MS.gene41620:intron | 40.0% | |
| AAGGTGAAGAAGACAACTAC+TGG | - | chr3.4:88211764-88211783 | MS.gene41620:CDS | 40.0% | |
| ACTGGAAATCAACTCATGCA+AGG | - | chr3.4:88209398-88209417 | MS.gene41620:intron | 40.0% | |
| AGTTAACCAAGCCAGAATGA+TGG | - | chr3.4:88210486-88210505 | MS.gene41620:CDS | 40.0% | |
| CCAAATTCGACAAATGAGTG+AGG | - | chr3.4:88210612-88210631 | MS.gene41620:CDS | 40.0% | |
| CCATCAAGTAACAGGGAAAA+TGG | + | chr3.4:88211636-88211655 | None:intergenic | 40.0% | |
| CCTCACTCATTTGTCGAATT+TGG | + | chr3.4:88210615-88210634 | None:intergenic | 40.0% | |
| GCTGATGTTAACTTAGGATC+TGG | - | chr3.4:88209058-88209077 | MS.gene41620:CDS | 40.0% | |
| GGTCTCATATAACCAGCATT+TGG | + | chr3.4:88209280-88209299 | None:intergenic | 40.0% | |
| TAAATGAACCAGAGAGACAG+TGG | - | chr3.4:88209644-88209663 | MS.gene41620:intron | 40.0% | |
| TCAGAGTGGAGGAGATTAAT+GGG | + | chr3.4:88211065-88211084 | None:intergenic | 40.0% | |
| TGAAATTGTTTGGCCTCCAA+TGG | - | chr3.4:88209888-88209907 | MS.gene41620:intron | 40.0% | |
| TGATGAGGAATTGCGTAGAA+GGG | - | chr3.4:88209795-88209814 | MS.gene41620:intron | 40.0% | |
| TGTTAACTTAGGATCTGGAC+AGG | - | chr3.4:88209063-88209082 | MS.gene41620:CDS | 40.0% | |
| TTCTGAACCATAACCATTGG+AGG | + | chr3.4:88209904-88209923 | None:intergenic | 40.0% | |
| TTCTTCTGTTCAAACTCCTC+TGG | + | chr3.4:88209436-88209455 | None:intergenic | 40.0% | |
| TTGATGAGGAATTGCGTAGA+AGG | - | chr3.4:88209794-88209813 | MS.gene41620:intron | 40.0% | |
| ! | AGAAGATGATGATGATGAGG+AGG | - | chr3.4:88209465-88209484 | MS.gene41620:intron | 40.0% |
| ! | AGTTAGGATATGGTTCTGCT+TGG | - | chr3.4:88210905-88210924 | MS.gene41620:CDS | 40.0% |
| ! | CAAAGGAAGAGGATTTTGAG+AGG | - | chr3.4:88211720-88211739 | MS.gene41620:CDS | 40.0% |
| ! | CGGACAATCAAGTTTGAGTT+AGG | - | chr3.4:88210889-88210908 | MS.gene41620:CDS | 40.0% |
| ! | GATTTTCAGTCCAAGGGAAA+AGG | - | chr3.4:88208989-88209008 | MS.gene41620:CDS | 40.0% |
| ! | GTCTACTTTGAAAGTCAGAG+TGG | + | chr3.4:88211079-88211098 | None:intergenic | 40.0% |
| ! | GTGTTCTGAACCATAACCAT+TGG | + | chr3.4:88209907-88209926 | None:intergenic | 40.0% |
| ! | TACAATTTGTTTCTCCCTGG+TGG | - | chr3.4:88210324-88210343 | MS.gene41620:intron | 40.0% |
| ! | TACTTTGAAAGTCAGAGTGG+AGG | + | chr3.4:88211076-88211095 | None:intergenic | 40.0% |
| ! | TTACTTCCATCATTCTGGCT+TGG | + | chr3.4:88210495-88210514 | None:intergenic | 40.0% |
| ! | TTGAGATACACCTTTTCCCT+TGG | + | chr3.4:88209002-88209021 | None:intergenic | 40.0% |
| !! | ATGCTCTAGGATTAGAACCA+TGG | + | chr3.4:88209174-88209193 | None:intergenic | 40.0% |
| !! | ATGGTTCTAATCCTAGAGCA+TGG | - | chr3.4:88209173-88209192 | MS.gene41620:intron | 40.0% |
| !! | CCATTTTCCCTGTTACTTGA+TGG | - | chr3.4:88211633-88211652 | MS.gene41620:CDS | 40.0% |
| !! | TGCTCTAGGATTAGAACCAT+GGG | + | chr3.4:88209173-88209192 | None:intergenic | 40.0% |
| !! | TGGTTCTAATCCTAGAGCAT+GGG | - | chr3.4:88209174-88209193 | MS.gene41620:intron | 40.0% |
| AATGAGGTCCTACCAGGAAA+TGG | - | chr3.4:88210582-88210601 | MS.gene41620:CDS | 45.0% | |
| AGACACGGAAGAAGAGCAAA+TGG | - | chr3.4:88209575-88209594 | MS.gene41620:intron | 45.0% | |
| ATCATTCCTCCTCCTCTACA+GGG | - | chr3.4:88209367-88209386 | MS.gene41620:intron | 45.0% | |
| CAAAAAGGGTGAAGGTTCAC+AGG | - | chr3.4:88209755-88209774 | MS.gene41620:intron | 45.0% | |
| CACATATCCATATCCACCAG+TGG | + | chr3.4:88209335-88209354 | None:intergenic | 45.0% | |
| CATTGTCTTTCGCAGCTTCT+CGG | + | chr3.4:88210725-88210744 | None:intergenic | 45.0% | |
| CCATCCACATTCTCCCTTAT+GGG | - | chr3.4:88211548-88211567 | MS.gene41620:CDS | 45.0% | |
| CTGTACCAATCAATAGCACC+AGG | + | chr3.4:88209694-88209713 | None:intergenic | 45.0% | |
| CTTCTCGGTCACTATACCAA+AGG | + | chr3.4:88210710-88210729 | None:intergenic | 45.0% | |
| GAAACCCATAAGGGAGAATG+TGG | + | chr3.4:88211555-88211574 | None:intergenic | 45.0% | |
| GATGAGGAATTGCGTAGAAG+GGG | - | chr3.4:88209796-88209815 | MS.gene41620:intron | 45.0% | |
| GTATGAAATGAGGTCCTACC+AGG | - | chr3.4:88210576-88210595 | MS.gene41620:CDS | 45.0% | |
| GTCAAAAGAGCCATGAGACA+CGG | - | chr3.4:88209560-88209579 | MS.gene41620:intron | 45.0% | |
| GTCAGAGTGGAGGAGATTAA+TGG | + | chr3.4:88211066-88211085 | None:intergenic | 45.0% | |
| TAGGATCTGGACAGGATGAT+GGG | - | chr3.4:88209071-88209090 | MS.gene41620:CDS | 45.0% | |
| TCCATCCACATTCTCCCTTA+TGG | - | chr3.4:88211547-88211566 | MS.gene41620:CDS | 45.0% | |
| TCGACAGCTCTTTGGATACA+TGG | - | chr3.4:88210350-88210369 | MS.gene41620:intron | 45.0% | |
| TGTAGAGGAGGAGGAATGAT+GGG | + | chr3.4:88209367-88209386 | None:intergenic | 45.0% | |
| TGTTTGGCCTCCAATGGTTA+TGG | - | chr3.4:88209894-88209913 | MS.gene41620:intron | 45.0% | |
| TTAGGATCTGGACAGGATGA+TGG | - | chr3.4:88209070-88209089 | MS.gene41620:CDS | 45.0% | |
| ! | AATGAGCAATGGTAACGAGC+TGG | - | chr3.4:88211191-88211210 | MS.gene41620:CDS | 45.0% |
| ! | AGATGATGATGATGAGGAGG+AGG | - | chr3.4:88209468-88209487 | MS.gene41620:intron | 45.0% |
| ! | ATGTTTGAAGCCTCAGCTAG+TGG | - | chr3.4:88210219-88210238 | MS.gene41620:intron | 45.0% |
| ! | GACAAGCATTTTGCTGAGCA+AGG | - | chr3.4:88210264-88210283 | MS.gene41620:intron | 45.0% |
| ! | GGTTCTAATCCTAGAGCATG+GGG | - | chr3.4:88209175-88209194 | MS.gene41620:intron | 45.0% |
| ! | GTAAGAGCACGGCATTCATA+TGG | - | chr3.4:88210165-88210184 | MS.gene41620:CDS | 45.0% |
| ! | TTTGGTGCACTACCATTTCC+TGG | + | chr3.4:88210597-88210616 | None:intergenic | 45.0% |
| !! | AAAAACAGAGGTGGTGGAAG+CGG | - | chr3.4:88209121-88209140 | MS.gene41620:intron | 45.0% |
| !! | CTGGGGAAGCATTTGGTAAA+TGG | - | chr3.4:88209836-88209855 | MS.gene41620:intron | 45.0% |
| !! | GCTTGCTGTACTTCTTGATG+AGG | - | chr3.4:88209780-88209799 | MS.gene41620:intron | 45.0% |
| !! | GGTGCTATTGATTGGTACAG+AGG | - | chr3.4:88209694-88209713 | MS.gene41620:intron | 45.0% |
| !! | TGGCTTGGTTAACTTGCAAC+TGG | + | chr3.4:88210480-88210499 | None:intergenic | 45.0% |
| AATGCCTGTTGAAAGCCTCC+AGG | + | chr3.4:88210389-88210408 | None:intergenic | 50.0% | |
| AGCATGGGGAAATGCAGATG+TGG | - | chr3.4:88209189-88209208 | MS.gene41620:intron | 50.0% | |
| AGCCTCAGCTAGTGGTTATC+TGG | - | chr3.4:88210227-88210246 | MS.gene41620:intron | 50.0% | |
| AGGAGAATCGCATTGTGAGG+CGG | - | chr3.4:88210746-88210765 | MS.gene41620:intron | 50.0% | |
| ATCATTGCCAGCCGCAGTAA+AGG | + | chr3.4:88208969-88208988 | None:intergenic | 50.0% | |
| CATCATTCCTCCTCCTCTAC+AGG | - | chr3.4:88209366-88209385 | MS.gene41620:intron | 50.0% | |
| CATGGCAACTAAAGACGACC+TGG | - | chr3.4:88210368-88210387 | MS.gene41620:CDS | 50.0% | |
| CCCATAAGGGAGAATGTGGA+TGG | + | chr3.4:88211551-88211570 | None:intergenic | 50.0% | |
| CGAGAAGCTGCGAAAGACAA+TGG | - | chr3.4:88210723-88210742 | MS.gene41620:intron | 50.0% | |
| CTAGGATTAGAACCATGGGC+TGG | + | chr3.4:88209169-88209188 | None:intergenic | 50.0% | |
| CTCAGCTAGTGGTTATCTGG+AGG | - | chr3.4:88210230-88210249 | MS.gene41620:intron | 50.0% | |
| CTCCAGATAACCACTAGCTG+AGG | + | chr3.4:88210232-88210251 | None:intergenic | 50.0% | |
| CTGCAAATGCAGAGGAGGAA+CGG | - | chr3.4:88211789-88211808 | MS.gene41620:CDS | 50.0% | |
| CTGTAGAGGAGGAGGAATGA+TGG | + | chr3.4:88209368-88209387 | None:intergenic | 50.0% | |
| CTTATGCGGCAGTAAGAGCA+CGG | - | chr3.4:88210154-88210173 | MS.gene41620:CDS | 50.0% | |
| GAAGCTGCGAAAGACAATGG+AGG | - | chr3.4:88210726-88210745 | MS.gene41620:intron | 50.0% | |
| GCACAGCAAAACAACACCTC+TGG | + | chr3.4:88211244-88211263 | None:intergenic | 50.0% | |
| GCAGATGTGGCTCAAAAGCA+GGG | - | chr3.4:88209202-88209221 | MS.gene41620:intron | 50.0% | |
| GTGCACTACCATTTCCTGGT+AGG | + | chr3.4:88210593-88210612 | None:intergenic | 50.0% | |
| GTGTGGAATAACAGTGGAGC+TGG | - | chr3.4:88209226-88209245 | MS.gene41620:intron | 50.0% | |
| TACCAAATGCTTCCCCAGCT+GGG | + | chr3.4:88209834-88209853 | None:intergenic | 50.0% | |
| TACTGGTCCTGCAAATGCAG+AGG | - | chr3.4:88211781-88211800 | MS.gene41620:CDS | 50.0% | |
| TATATGAGACCCGCTGGTAG+AGG | - | chr3.4:88209289-88209308 | MS.gene41620:intron | 50.0% | |
| TATCCATATCCACCAGTGGC+TGG | + | chr3.4:88209331-88209350 | None:intergenic | 50.0% | |
| TCATCCCTCGATGACCTTGA+GGG | + | chr3.4:88210191-88210210 | None:intergenic | 50.0% | |
| TCATTGCCAGCCGCAGTAAA+GGG | + | chr3.4:88208968-88208987 | None:intergenic | 50.0% | |
| TCTGCATTTCCCCATGCTCT+AGG | + | chr3.4:88209187-88209206 | None:intergenic | 50.0% | |
| TGAGTTCCAGAAGAGGTGGT+AGG | - | chr3.4:88208942-88208961 | MS.gene41620:CDS | 50.0% | |
| TGATCCCAAAACTGAGCAGC+TGG | - | chr3.4:88209024-88209043 | MS.gene41620:CDS | 50.0% | |
| TGCAGATGTGGCTCAAAAGC+AGG | - | chr3.4:88209201-88209220 | MS.gene41620:intron | 50.0% | |
| TGCTCTTCTTCCGTGTCTCA+TGG | + | chr3.4:88209573-88209592 | None:intergenic | 50.0% | |
| TGGAGGAGAATCGCATTGTG+AGG | - | chr3.4:88210743-88210762 | MS.gene41620:intron | 50.0% | |
| TTACCAAATGCTTCCCCAGC+TGG | + | chr3.4:88209835-88209854 | None:intergenic | 50.0% | |
| TTATCTGGAGGCAGAACGTC+TGG | - | chr3.4:88210242-88210261 | MS.gene41620:intron | 50.0% | |
| ! | AAAACTGAGCAGCTGGCTCA+AGG | - | chr3.4:88209031-88209050 | MS.gene41620:CDS | 50.0% |
| ! | GCTTTCAACAGGCATTGCCA+AGG | - | chr3.4:88210393-88210412 | MS.gene41620:CDS | 50.0% |
| ! | TGAGCCAGCTGCTCAGTTTT+GGG | + | chr3.4:88209031-88209050 | None:intergenic | 50.0% |
| ! | TGATGATGATGAGGAGGAGG+AGG | - | chr3.4:88209471-88209490 | MS.gene41620:intron | 50.0% |
| ! | TTGAGCCAGCTGCTCAGTTT+TGG | + | chr3.4:88209032-88209051 | None:intergenic | 50.0% |
| !! | GGATTTTGAGAGGATGCAGC+AGG | - | chr3.4:88211730-88211749 | MS.gene41620:CDS | 50.0% |
| !! | GTGGTCCTGGTGCTATTGAT+TGG | - | chr3.4:88209686-88209705 | MS.gene41620:intron | 50.0% |
| AAAGGGCCTACCACCTCTTC+TGG | + | chr3.4:88208951-88208970 | None:intergenic | 55.0% | |
| ACGACCTGGAGGCTTTCAAC+AGG | - | chr3.4:88210382-88210401 | MS.gene41620:CDS | 55.0% | |
| AGGTGGTAGGCCCTTTACTG+CGG | - | chr3.4:88208955-88208974 | MS.gene41620:CDS | 55.0% | |
| ATGGCCCTCAAGGTCATCGA+GGG | - | chr3.4:88210184-88210203 | MS.gene41620:CDS | 55.0% | |
| ATTCCTCCTCCTCTACAGGG+TGG | - | chr3.4:88209370-88209389 | MS.gene41620:intron | 55.0% | |
| CACTACAGTAGTCCCAGCTG+GGG | - | chr3.4:88209819-88209838 | MS.gene41620:intron | 55.0% | |
| CACTGTCCAGCTTGTCAAGG+TGG | - | chr3.4:88209667-88209686 | MS.gene41620:intron | 55.0% | |
| CAGGGCGTGTGGAATAACAG+TGG | - | chr3.4:88209220-88209239 | MS.gene41620:intron | 55.0% | |
| CCTTCCATTGCCTCTACCAG+CGG | + | chr3.4:88209302-88209321 | None:intergenic | 55.0% | |
| CGGCATTCATATGGCCCTCA+AGG | - | chr3.4:88210174-88210193 | MS.gene41620:CDS | 55.0% | |
| CGTTCCTCCTCTGCATTTGC+AGG | + | chr3.4:88211791-88211810 | None:intergenic | 55.0% | |
| CTCATCCCTCGATGACCTTG+AGG | + | chr3.4:88210192-88210211 | None:intergenic | 55.0% | |
| CTTCCATTGCCTCTACCAGC+GGG | + | chr3.4:88209301-88209320 | None:intergenic | 55.0% | |
| GCACTACAGTAGTCCCAGCT+GGG | - | chr3.4:88209818-88209837 | MS.gene41620:intron | 55.0% | |
| GCTGGTTATATGAGACCCGC+TGG | - | chr3.4:88209283-88209302 | MS.gene41620:intron | 55.0% | |
| GGAGGACGACTGTGATGATC+TGG | - | chr3.4:88209489-88209508 | MS.gene41620:intron | 55.0% | |
| GGCAACTAAAGACGACCTGG+AGG | - | chr3.4:88210371-88210390 | MS.gene41620:CDS | 55.0% | |
| GGTGGCAATCGACAGCTCTT+TGG | - | chr3.4:88210342-88210361 | MS.gene41620:intron | 55.0% | |
| TATGGCCCTCAAGGTCATCG+AGG | - | chr3.4:88210183-88210202 | MS.gene41620:CDS | 55.0% | |
| TGGCACTGTCCAGCTTGTCA+AGG | - | chr3.4:88209664-88209683 | MS.gene41620:intron | 55.0% | |
| TGGTCCTGCAAATGCAGAGG+AGG | - | chr3.4:88211784-88211803 | MS.gene41620:CDS | 55.0% | |
| ! | AAGAGCTGTCGATTGCCACC+AGG | + | chr3.4:88210342-88210361 | None:intergenic | 55.0% |
| ! | AGAGCTGTCGATTGCCACCA+GGG | + | chr3.4:88210341-88210360 | None:intergenic | 55.0% |
| ! | ATATCCACCAGTGGCTGGCT+GGG | + | chr3.4:88209326-88209345 | None:intergenic | 55.0% |
| !! | ACCAGCATTTGGTGTCTGCC+AGG | + | chr3.4:88209269-88209288 | None:intergenic | 55.0% |
| !! | CAGCATTTGGTGTCTGCCAG+GGG | + | chr3.4:88209267-88209286 | None:intergenic | 55.0% |
| !! | CCAGCATTTGGTGTCTGCCA+GGG | + | chr3.4:88209268-88209287 | None:intergenic | 55.0% |
| !! | GGATTAGAACCATGGGCTGG+AGG | + | chr3.4:88209166-88209185 | None:intergenic | 55.0% |
| !! | TGGACAGGATGATGGGCCAT+GGG | - | chr3.4:88209078-88209097 | MS.gene41620:CDS | 55.0% |
| AGACCCGCTGGTAGAGGCAA+TGG | - | chr3.4:88209295-88209314 | MS.gene41620:intron | 60.0% | |
| AGTGGAGCTGGAAGAGCTGC+TGG | - | chr3.4:88209238-88209257 | MS.gene41620:intron | 60.0% | |
| CAGTTCCAGCCACCCTGTAG+AGG | + | chr3.4:88209382-88209401 | None:intergenic | 60.0% | |
| CATATCCACCAGTGGCTGGC+TGG | + | chr3.4:88209327-88209346 | None:intergenic | 60.0% | |
| CCAGCTTGTCAAGGTGGTCC+TGG | - | chr3.4:88209673-88209692 | MS.gene41620:intron | 60.0% | |
| CCAGGACCACCTTGACAAGC+TGG | + | chr3.4:88209676-88209695 | None:intergenic | 60.0% | |
| CCCTGGCAGACACCAAATGC+TGG | - | chr3.4:88209265-88209284 | MS.gene41620:intron | 60.0% | |
| CCGCTGGTAGAGGCAATGGA+AGG | - | chr3.4:88209299-88209318 | MS.gene41620:intron | 60.0% | |
| CTCTACAGGGTGGCTGGAAC+TGG | - | chr3.4:88209380-88209399 | MS.gene41620:intron | 60.0% | |
| GAAGAGCTGCTGGAAACCCC+TGG | - | chr3.4:88209248-88209267 | MS.gene41620:intron | 60.0% | |
| GGCACTACAGTAGTCCCAGC+TGG | - | chr3.4:88209817-88209836 | MS.gene41620:intron | 60.0% | |
| TGGCTCAAAAGCAGGGCGTG+TGG | - | chr3.4:88209209-88209228 | MS.gene41620:intron | 60.0% | |
| TTCCAGCCACCCTGTAGAGG+AGG | + | chr3.4:88209379-88209398 | None:intergenic | 60.0% | |
| ! | CAGCCAGCCACTGGTGGATA+TGG | - | chr3.4:88209325-88209344 | MS.gene41620:intron | 60.0% |
| ! | GCAGCAGGAAGAGCGTGAGA+AGG | - | chr3.4:88211745-88211764 | MS.gene41620:CDS | 60.0% |
| ! | GGACAGTGCCACTGTCTCTC+TGG | + | chr3.4:88209655-88209674 | None:intergenic | 60.0% |
| ! | TATCCACCAGTGGCTGGCTG+GGG | + | chr3.4:88209325-88209344 | None:intergenic | 60.0% |
| !! | AAGCGGTGCTGCCAAACAGC+GGG | - | chr3.4:88209138-88209157 | MS.gene41620:intron | 60.0% |
| !! | CTGGACAGGATGATGGGCCA+TGG | - | chr3.4:88209077-88209096 | MS.gene41620:CDS | 60.0% |
| !! | GAAGCGGTGCTGCCAAACAG+CGG | - | chr3.4:88209137-88209156 | MS.gene41620:intron | 60.0% |
| !! | GTCCCAGCTGGGGAAGCATT+TGG | - | chr3.4:88209829-88209848 | MS.gene41620:intron | 60.0% |
| CAGCCACCCTGTAGAGGAGG+AGG | + | chr3.4:88209376-88209395 | None:intergenic | 65.0% | |
| CTCCTCCTCTACAGGGTGGC+TGG | - | chr3.4:88209374-88209393 | MS.gene41620:intron | 65.0% | |
| GGTAGGCCCTTTACTGCGGC+TGG | - | chr3.4:88208959-88208978 | MS.gene41620:CDS | 65.0% | |
| !! | AGCGGTGCTGCCAAACAGCG+GGG | - | chr3.4:88209139-88209158 | MS.gene41620:intron | 65.0% |
| GGCTGGAGGACCCCGCTGTT+TGG | + | chr3.4:88209152-88209171 | None:intergenic | 70.0% | |
| AGGCCCCAGCCAGCCACTGG+TGG | - | chr3.4:88209319-88209338 | MS.gene41620:intron | 75.0% | |
| CAGCGGGGTCCTCCAGCCCA+TGG | - | chr3.4:88209154-88209173 | MS.gene41620:intron | 75.0% | |
| GGAAGGCCCCAGCCAGCCAC+TGG | - | chr3.4:88209316-88209335 | MS.gene41620:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 88208941 | 88211841 | 88208941 | ID=MS.gene41620 |
| chr3.4 | mRNA | 88208941 | 88211841 | 88208941 | ID=MS.gene41620.t1;Parent=MS.gene41620 |
| chr3.4 | exon | 88210828 | 88211841 | 88210828 | ID=MS.gene41620.t1.exon1;Parent=MS.gene41620.t1 |
| chr3.4 | CDS | 88210828 | 88211841 | 88210828 | ID=cds.MS.gene41620.t1;Parent=MS.gene41620.t1 |
| chr3.4 | exon | 88210368 | 88210671 | 88210368 | ID=MS.gene41620.t1.exon2;Parent=MS.gene41620.t1 |
| chr3.4 | CDS | 88210368 | 88210671 | 88210368 | ID=cds.MS.gene41620.t1;Parent=MS.gene41620.t1 |
| chr3.4 | exon | 88209978 | 88210222 | 88209978 | ID=MS.gene41620.t1.exon3;Parent=MS.gene41620.t1 |
| chr3.4 | CDS | 88209978 | 88210222 | 88209978 | ID=cds.MS.gene41620.t1;Parent=MS.gene41620.t1 |
| chr3.4 | exon | 88208941 | 88209123 | 88208941 | ID=MS.gene41620.t1.exon4;Parent=MS.gene41620.t1 |
| chr3.4 | CDS | 88208941 | 88209123 | 88208941 | ID=cds.MS.gene41620.t1;Parent=MS.gene41620.t1 |
| Gene Sequence |
| Protein sequence |
