Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41697.t1 | QCD97309.1 | 64.6 | 906 | 276 | 3 | 1 | 864 | 11 | 913 | 0.00E+00 | 1208.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41697.t1 | P52914 | 73.7 | 433 | 111 | 2 | 434 | 864 | 24 | 455 | 1.4e-188 | 661.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41697.t1 | A0A4D6M7F8 | 64.6 | 906 | 276 | 3 | 1 | 864 | 11 | 913 | 0.0e+00 | 1208.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049989 | MS.gene41697 | 0.845194 | 4.73E-59 | -1.69E-46 |
| MS.gene050297 | MS.gene41697 | 0.81863 | 1.77E-52 | -1.69E-46 |
| MS.gene052143 | MS.gene41697 | 0.822743 | 2.01E-53 | -1.69E-46 |
| MS.gene052367 | MS.gene41697 | 0.813902 | 2.02E-51 | -1.69E-46 |
| MS.gene053416 | MS.gene41697 | 0.838451 | 2.85E-57 | -1.69E-46 |
| MS.gene053417 | MS.gene41697 | 0.839194 | 1.83E-57 | -1.69E-46 |
| MS.gene055251 | MS.gene41697 | 0.824549 | 7.60E-54 | -1.69E-46 |
| MS.gene056526 | MS.gene41697 | 0.830391 | 3.01E-55 | -1.69E-46 |
| MS.gene06057 | MS.gene41697 | 0.831799 | 1.36E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41697.t1 | MTR_7g085180 | 96.288 | 431 | 16 | 0 | 434 | 864 | 25 | 455 | 0.0 | 872 |
| MS.gene41697.t1 | MTR_7g085180 | 91.284 | 436 | 37 | 1 | 1 | 435 | 1 | 436 | 0.0 | 833 |
| MS.gene41697.t1 | MTR_7g085120 | 74.537 | 432 | 109 | 1 | 434 | 864 | 25 | 456 | 0.0 | 658 |
| MS.gene41697.t1 | MTR_7g085120 | 72.986 | 422 | 113 | 1 | 16 | 436 | 17 | 438 | 0.0 | 631 |
| MS.gene41697.t1 | MTR_7g085150 | 73.733 | 434 | 111 | 3 | 434 | 864 | 45 | 478 | 0.0 | 645 |
| MS.gene41697.t1 | MTR_7g085150 | 72.893 | 439 | 115 | 4 | 1 | 436 | 23 | 460 | 0.0 | 644 |
| MS.gene41697.t1 | MTR_7g085200 | 69.406 | 438 | 134 | 0 | 1 | 438 | 1 | 438 | 0.0 | 622 |
| MS.gene41697.t1 | MTR_7g085200 | 67.506 | 437 | 142 | 0 | 428 | 864 | 18 | 454 | 0.0 | 609 |
| MS.gene41697.t1 | MTR_7g085200 | 69.091 | 440 | 134 | 1 | 1 | 438 | 1 | 440 | 0.0 | 617 |
| MS.gene41697.t1 | MTR_7g085200 | 67.352 | 438 | 141 | 1 | 428 | 863 | 18 | 455 | 0.0 | 605 |
| MS.gene41697.t1 | MTR_7g085150 | 72.749 | 411 | 108 | 4 | 1 | 408 | 23 | 432 | 0.0 | 597 |
| MS.gene41697.t1 | MTR_7g085150 | 73.711 | 388 | 99 | 3 | 434 | 818 | 45 | 432 | 0.0 | 573 |
| MS.gene41697.t1 | MTR_4g036220 | 66.210 | 438 | 112 | 5 | 1 | 436 | 12 | 415 | 0.0 | 559 |
| MS.gene41697.t1 | MTR_4g036220 | 66.513 | 433 | 110 | 4 | 434 | 864 | 34 | 433 | 0.0 | 559 |
| MS.gene41697.t1 | MTR_7g085090 | 55.862 | 435 | 189 | 2 | 5 | 438 | 29 | 461 | 5.52e-168 | 496 |
| MS.gene41697.t1 | MTR_7g085090 | 56.429 | 420 | 180 | 2 | 435 | 853 | 49 | 466 | 6.92e-165 | 488 |
| MS.gene41697.t1 | MTR_6g033000 | 53.396 | 427 | 198 | 1 | 13 | 438 | 50 | 476 | 5.85e-153 | 457 |
| MS.gene41697.t1 | MTR_6g033000 | 54.436 | 417 | 189 | 1 | 439 | 854 | 66 | 482 | 1.93e-152 | 456 |
| MS.gene41697.t1 | MTR_7g085160 | 75.281 | 178 | 33 | 2 | 687 | 864 | 53 | 219 | 1.70e-76 | 248 |
| MS.gene41697.t1 | MTR_7g085160 | 77.987 | 159 | 32 | 1 | 277 | 435 | 53 | 208 | 1.17e-71 | 235 |
| MS.gene41697.t1 | MTR_5g040710 | 30.769 | 299 | 170 | 10 | 454 | 728 | 79 | 364 | 6.52e-33 | 135 |
| MS.gene41697.t1 | MTR_5g040710 | 27.778 | 432 | 246 | 17 | 36 | 435 | 72 | 469 | 6.70e-33 | 135 |
| MS.gene41697.t1 | MTR_4g105480 | 23.380 | 355 | 191 | 10 | 3 | 299 | 21 | 352 | 9.69e-21 | 97.8 |
| MS.gene41697.t1 | MTR_4g105480 | 21.564 | 473 | 271 | 16 | 447 | 848 | 45 | 488 | 2.16e-18 | 90.1 |
| MS.gene41697.t1 | MTR_8g072360 | 33.158 | 190 | 105 | 4 | 38 | 205 | 96 | 285 | 4.81e-20 | 95.9 |
| MS.gene41697.t1 | MTR_8g072360 | 32.812 | 192 | 107 | 4 | 446 | 615 | 94 | 285 | 2.85e-19 | 93.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41697.t1 | AT5G18280 | 52.657 | 414 | 195 | 1 | 441 | 853 | 58 | 471 | 1.23e-148 | 446 |
| MS.gene41697.t1 | AT5G18280 | 52.323 | 409 | 194 | 1 | 31 | 438 | 58 | 466 | 4.54e-146 | 439 |
| MS.gene41697.t1 | AT3G04080 | 52.488 | 402 | 190 | 1 | 453 | 853 | 69 | 470 | 3.20e-143 | 432 |
| MS.gene41697.t1 | AT3G04080 | 50.000 | 424 | 211 | 1 | 16 | 438 | 42 | 465 | 3.22e-141 | 427 |
| MS.gene41697.t1 | AT1G14250 | 28.306 | 431 | 258 | 13 | 445 | 851 | 63 | 466 | 2.25e-41 | 159 |
| MS.gene41697.t1 | AT1G14250 | 28.974 | 390 | 232 | 11 | 44 | 409 | 71 | 439 | 1.13e-39 | 154 |
| MS.gene41697.t1 | AT1G14240 | 28.604 | 437 | 264 | 12 | 436 | 851 | 53 | 462 | 2.40e-41 | 159 |
| MS.gene41697.t1 | AT1G14240 | 28.954 | 411 | 247 | 10 | 44 | 434 | 70 | 455 | 1.89e-39 | 153 |
| MS.gene41697.t1 | AT1G14240 | 28.604 | 437 | 264 | 12 | 436 | 851 | 53 | 462 | 2.40e-41 | 159 |
| MS.gene41697.t1 | AT1G14240 | 28.954 | 411 | 247 | 10 | 44 | 434 | 70 | 455 | 1.89e-39 | 153 |
| MS.gene41697.t1 | AT1G14240 | 28.604 | 437 | 264 | 12 | 436 | 851 | 53 | 462 | 2.40e-41 | 159 |
| MS.gene41697.t1 | AT1G14240 | 28.954 | 411 | 247 | 10 | 44 | 434 | 70 | 455 | 1.89e-39 | 153 |
| MS.gene41697.t1 | AT1G14230 | 28.571 | 427 | 243 | 11 | 454 | 851 | 81 | 474 | 3.42e-41 | 159 |
| MS.gene41697.t1 | AT1G14230 | 28.333 | 420 | 239 | 11 | 44 | 434 | 81 | 467 | 6.14e-39 | 152 |
| MS.gene41697.t1 | AT1G14240 | 28.146 | 437 | 262 | 13 | 436 | 851 | 53 | 458 | 4.08e-38 | 149 |
| MS.gene41697.t1 | AT1G14240 | 28.467 | 411 | 245 | 11 | 44 | 434 | 70 | 451 | 3.04e-36 | 144 |
| MS.gene41697.t1 | AT2G02970 | 28.777 | 417 | 249 | 13 | 44 | 435 | 87 | 480 | 6.28e-37 | 147 |
| MS.gene41697.t1 | AT2G02970 | 28.132 | 423 | 252 | 14 | 454 | 849 | 87 | 484 | 3.60e-36 | 145 |
| MS.gene41697.t1 | AT4G19180 | 27.170 | 265 | 159 | 7 | 42 | 278 | 143 | 401 | 3.67e-17 | 87.0 |
| MS.gene41697.t1 | AT4G19180 | 27.170 | 265 | 159 | 7 | 42 | 278 | 143 | 401 | 3.67e-17 | 87.0 |
| MS.gene41697.t1 | AT4G19180 | 27.170 | 265 | 159 | 7 | 42 | 278 | 143 | 401 | 3.67e-17 | 87.0 |
Find 204 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACTATGTATTGGGGAATT+TGG | 0.093358 | 7.2:-22519351 | MS.gene41697:CDS |
| TAACTATGTATTGGGGAATT+TGG | 0.093358 | 7.2:-22525219 | MS.gene41697:CDS |
| CCCAAGCCTAAGGGGTGTTT+TGG | 0.171551 | 7.2:+22521712 | None:intergenic |
| TGCAGGCAACCGCGGGTTTA+AGG | 0.202461 | 7.2:-22526577 | MS.gene41697:intron |
| AGCATGGAATTAGGTTTATT+TGG | 0.205910 | 7.2:+22523632 | None:intergenic |
| AGTATGGAATTAGGTTTATT+TGG | 0.217073 | 7.2:+22517784 | None:intergenic |
| AAAATCTCTCATTCCACTTT+TGG | 0.222729 | 7.2:-22521771 | MS.gene41697:CDS |
| AGCACAAGCTTCTTAATATA+TGG | 0.233885 | 7.2:+22519209 | None:intergenic |
| AGCACAAGCTTCTTAATATA+TGG | 0.233885 | 7.2:+22525077 | None:intergenic |
| AACTATGTATTGGGGAATTT+GGG | 0.257906 | 7.2:-22519350 | MS.gene41697:CDS |
| AACTATGTATTGGGGAATTT+GGG | 0.257906 | 7.2:-22525218 | MS.gene41697:CDS |
| ACTGGATGAAGCATGGAATT+AGG | 0.266923 | 7.2:+22523623 | None:intergenic |
| CCCACATATAAGAACCTTCT+TGG | 0.273411 | 7.2:+22519555 | None:intergenic |
| CCCACATATAAGAACCTTCT+TGG | 0.273411 | 7.2:+22526341 | None:intergenic |
| ACTGGATGAAGTATGGAATT+AGG | 0.275392 | 7.2:+22517775 | None:intergenic |
| CCCAAGCCTAAGGGGTGTTT+TGG | 0.282023 | 7.2:+22529013 | None:intergenic |
| CCCTATCCGAGTTGCACTTT+TGG | 0.286988 | 7.2:-22518001 | MS.gene41697:CDS |
| CCCTATCCGAGTTGCACTTT+TGG | 0.286988 | 7.2:-22523853 | MS.gene41697:CDS |
| GAGGTTAGGGCTTCTTGTTT+TGG | 0.293335 | 7.2:+22529340 | None:intergenic |
| AAAGGGACCTTTACATATTC+AGG | 0.293841 | 7.2:-22518118 | MS.gene41697:intron |
| AAAGGGACCTTTACATATTC+AGG | 0.293841 | 7.2:-22523970 | MS.gene41697:intron |
| AAACTTAGGTAACGCTGATA+TGG | 0.305974 | 7.2:+22517236 | None:intergenic |
| CAACATGTGTTGCTCGTTCA+TGG | 0.311386 | 7.2:-22523485 | MS.gene41697:CDS |
| CAACATGTGTTGCTTGTTCA+TGG | 0.317545 | 7.2:-22517637 | MS.gene41697:CDS |
| GTGACAGTTAACTATGTATT+GGG | 0.320917 | 7.2:-22519359 | MS.gene41697:CDS |
| GTGACAGTTAACTATGTATT+GGG | 0.320917 | 7.2:-22525227 | MS.gene41697:CDS |
| GAAATCTACTGGATGAAGTA+TGG | 0.326285 | 7.2:+22517768 | None:intergenic |
| TCTTGTAGTTACTTGCGTTT+TGG | 0.327536 | 7.2:-22519034 | MS.gene41697:intron |
| CTCCGTAAGACGAGGATAAA+TGG | 0.342782 | 7.2:+22523544 | None:intergenic |
| TTGCAAAGAAATAATTCTTA+AGG | 0.346655 | 7.2:-22523899 | MS.gene41697:CDS |
| ATATTCAGGAGTGGAGTATA+AGG | 0.350913 | 7.2:-22518104 | MS.gene41697:CDS |
| ATATTCAGGAGTGGAGTATA+AGG | 0.350913 | 7.2:-22523956 | MS.gene41697:CDS |
| AACCGCGGGTTTAAGGCTTT+TGG | 0.352299 | 7.2:-22526570 | MS.gene41697:CDS |
| AATATGATCTCTATGTTCAT+AGG | 0.360539 | 7.2:-22519175 | MS.gene41697:intron |
| AATATGATCTCTATGTTCAT+AGG | 0.360539 | 7.2:-22525043 | MS.gene41697:intron |
| TTGCAAAGAAATAATTCTTA+AGG | 0.362668 | 7.2:-22518047 | MS.gene41697:CDS |
| GATGCAGTTTCTATTATTGA+TGG | 0.366866 | 7.2:-22519581 | MS.gene41697:CDS |
| GATGCAGTTTCAATTATAGA+TGG | 0.368431 | 7.2:-22526367 | MS.gene41697:CDS |
| CCAAAACACCCCTTAGGCTT+GGG | 0.374595 | 7.2:-22521712 | MS.gene41697:CDS |
| ATATGACAACATACGAGGTT+AGG | 0.374979 | 7.2:+22529326 | None:intergenic |
| GATCTAAGTTCTGATCAAAA+TGG | 0.383146 | 7.2:+22522008 | None:intergenic |
| TACTTCAGCTTTCGCTTACC+TGG | 0.385501 | 7.2:-22517930 | MS.gene41697:CDS |
| TACTTCAGCTTTCGCTTACC+TGG | 0.385501 | 7.2:-22523782 | MS.gene41697:CDS |
| CCAAAACACCCCTTAGGCTT+GGG | 0.387043 | 7.2:-22529013 | MS.gene41697:CDS |
| GCTTCAATTTCGAAATCTAC+TGG | 0.387215 | 7.2:+22517757 | None:intergenic |
| GCTTCAATTTCGAAATCTAC+TGG | 0.387215 | 7.2:+22523605 | None:intergenic |
| TCCTCTCCATCAGCAACTTT+AGG | 0.389941 | 7.2:+22519233 | None:intergenic |
| GATCTAAGTTCTGATCAAAA+TGG | 0.389966 | 7.2:+22529266 | None:intergenic |
| AAACCAGGTTTGAGTGCATA+TGG | 0.392234 | 7.2:-22521815 | MS.gene41697:CDS |
| TACATTAATCGCTTAAACTT+AGG | 0.392460 | 7.2:+22517222 | None:intergenic |
| TATGACAGCGTAAGAGGTTA+AGG | 0.393565 | 7.2:+22522069 | None:intergenic |
| GTGTTGCTTGTTCATGGATT+TGG | 0.395528 | 7.2:-22517631 | MS.gene41697:intron |
| CTCTCTTCCTCCCAATATCT+TGG | 0.395649 | 7.2:-22529394 | MS.gene41697:CDS |
| TTCTTTGCAATCGTCAAAGT+TGG | 0.399956 | 7.2:+22523912 | None:intergenic |
| TGGAATGGTGGAGGAGGGAG+TGG | 0.402024 | 7.2:-22517971 | MS.gene41697:CDS |
| TGGAATGGTGGAGGAGGGAG+TGG | 0.402024 | 7.2:-22523823 | MS.gene41697:CDS |
| TTCTTTGCAATCATCAAAGT+TGG | 0.402098 | 7.2:+22518060 | None:intergenic |
| ATCAAATATGACAGCGTAAG+AGG | 0.408728 | 7.2:+22522063 | None:intergenic |
| TCCTCGCCATCAGCAACTTT+AGG | 0.413183 | 7.2:+22525101 | None:intergenic |
| TCTTGTAGTTACTTGCGCTT+TGG | 0.424535 | 7.2:-22524902 | MS.gene41697:intron |
| GGTGACAGTTAACTATGTAT+TGG | 0.433794 | 7.2:-22519360 | MS.gene41697:CDS |
| GGTGACAGTTAACTATGTAT+TGG | 0.433794 | 7.2:-22525228 | MS.gene41697:CDS |
| ATCCATTTATCCTCGTCTTA+CGG | 0.437580 | 7.2:-22523546 | MS.gene41697:CDS |
| CCCAAAACACCCCTTAGGCT+TGG | 0.438369 | 7.2:-22521713 | MS.gene41697:CDS |
| GTGTTGCTCGTTCATGGATT+TGG | 0.442498 | 7.2:-22523479 | MS.gene41697:intron |
| CCACATATAAGAACCTTCTT+GGG | 0.448076 | 7.2:+22519556 | None:intergenic |
| AGCTTGTGCATTAAACTTTG+AGG | 0.451748 | 7.2:-22517728 | MS.gene41697:CDS |
| AGCTTGTGCATTAAACTTTG+AGG | 0.451748 | 7.2:-22523576 | MS.gene41697:CDS |
| CCCAAGAAGGTTCTTATATG+TGG | 0.452789 | 7.2:-22519556 | MS.gene41697:CDS |
| CCCAAGAAGGTTCTTATATG+TGG | 0.452789 | 7.2:-22526342 | MS.gene41697:CDS |
| AAGAGATCCATGCATACATA+TGG | 0.457084 | 7.2:+22517664 | None:intergenic |
| AAGAGATCCATGCATACATA+TGG | 0.457084 | 7.2:+22523512 | None:intergenic |
| CCCACTGTAATTTCTTGTTG+AGG | 0.459373 | 7.2:+22523312 | None:intergenic |
| ATTATAGATGGAACCCAAGA+AGG | 0.461015 | 7.2:-22526355 | MS.gene41697:CDS |
| TATTGGGAGGAAGAGAGAGC+AGG | 0.461825 | 7.2:+22529400 | None:intergenic |
| ATTATTGATGGAACCCAAGA+AGG | 0.464764 | 7.2:-22519569 | MS.gene41697:CDS |
| GTGGAAGCTGCATGGCCTCT+AGG | 0.468068 | 7.2:-22517273 | MS.gene41697:CDS |
| GTGGAAGCTGCATGGCCTCT+AGG | 0.468068 | 7.2:-22523261 | MS.gene41697:intron |
| ACAAGAAATTACAGTGGGGC+AGG | 0.468961 | 7.2:-22523307 | MS.gene41697:CDS |
| TCCAAAACACCCCTTAGGCT+TGG | 0.473783 | 7.2:-22529014 | MS.gene41697:CDS |
| CCACATATAAGAACCTTCTT+GGG | 0.475690 | 7.2:+22526342 | None:intergenic |
| ATCCACTTATCCTCGACTTA+CGG | 0.480369 | 7.2:-22517698 | MS.gene41697:CDS |
| GGAATATGGAATGGTGGAGG+AGG | 0.482405 | 7.2:-22517977 | MS.gene41697:CDS |
| GGAATATGGAATGGTGGAGG+AGG | 0.482405 | 7.2:-22523829 | MS.gene41697:CDS |
| TGCAGGCAACCGCAGGTTTG+AGG | 0.484016 | 7.2:-22519793 | MS.gene41697:intron |
| GAAAACTCACCCCAAGCCTA+AGG | 0.486209 | 7.2:+22521702 | None:intergenic |
| TACGCTGTCATATTTGATGC+TGG | 0.490658 | 7.2:-22522058 | MS.gene41697:CDS |
| TCAAAGTTGGAGCCAGAAGA+AGG | 0.491011 | 7.2:+22518073 | None:intergenic |
| TCAAAGTTGGAGCCAGAAGA+AGG | 0.491011 | 7.2:+22523925 | None:intergenic |
| AATATATTACCATTAAATCC+AGG | 0.495788 | 7.2:+22524815 | None:intergenic |
| TCTTCTGCTTCCTCCAAAAG+TGG | 0.496021 | 7.2:+22521758 | None:intergenic |
| TAAATATTACCATTAAATCC+AGG | 0.499439 | 7.2:+22518947 | None:intergenic |
| TATTAAGAAGCTTGTGCTCA+AGG | 0.501262 | 7.2:-22519204 | MS.gene41697:CDS |
| TATTAAGAAGCTTGTGCTCA+AGG | 0.501262 | 7.2:-22525072 | MS.gene41697:CDS |
| TATGACAACATACGAGGTTA+GGG | 0.506011 | 7.2:+22529327 | None:intergenic |
| GAAATGTGATGAGTGTGATT+AGG | 0.506969 | 7.2:+22529437 | None:intergenic |
| AACCAGGTTTGAGTGCATAT+GGG | 0.507093 | 7.2:-22521814 | MS.gene41697:CDS |
| AAAACTCACCCCAAGCCTAA+GGG | 0.507438 | 7.2:+22529004 | None:intergenic |
| CTCTCTGCTTCTTCTAGAAG+TGG | 0.508455 | 7.2:+22529059 | None:intergenic |
| TCCCCATATGCACTCAAACC+TGG | 0.510774 | 7.2:+22521812 | None:intergenic |
| AAATCTTTCGATTAGTGAGT+AGG | 0.512314 | 7.2:+22522107 | None:intergenic |
| TCCGCGTATGCACTCAAACC+TGG | 0.513693 | 7.2:+22529113 | None:intergenic |
| TGCATCACGTTGAACGTTGA+GGG | 0.516798 | 7.2:+22519598 | None:intergenic |
| AATGCTCCTAAAGTTGCTGA+TGG | 0.518455 | 7.2:-22519239 | MS.gene41697:CDS |
| ATATTTGATGCTGGTAGCAC+TGG | 0.520451 | 7.2:-22522049 | MS.gene41697:CDS |
| ATATTTGATGCTGGTAGCAC+TGG | 0.520451 | 7.2:-22529307 | MS.gene41697:CDS |
| GAATATGGAATGGTGGAGGA+GGG | 0.520495 | 7.2:-22517976 | MS.gene41697:CDS |
| GAATATGGAATGGTGGAGGA+GGG | 0.520495 | 7.2:-22523828 | MS.gene41697:CDS |
| CAAAGAAGCAACTCGAGCAC+AGG | 0.521520 | 7.2:-22519011 | MS.gene41697:CDS |
| CAAAGAAGCAACTCGAGCAC+AGG | 0.521520 | 7.2:-22524879 | MS.gene41697:CDS |
| GGAGTAATTGACCTTGGAGG+TGG | 0.525763 | 7.2:-22519305 | MS.gene41697:CDS |
| AAAAGCTTCACAAACACAAT+GGG | 0.525793 | 7.2:-22525194 | MS.gene41697:CDS |
| CAAAGTTGGAGCCAGAAGAA+GGG | 0.531298 | 7.2:+22518074 | None:intergenic |
| AAAACTCACCCCAAGCCTAA+GGG | 0.532118 | 7.2:+22521703 | None:intergenic |
| CTCCACTCCTGAATATGTAA+AGG | 0.532753 | 7.2:+22518111 | None:intergenic |
| CTCCACTCCTGAATATGTAA+AGG | 0.532753 | 7.2:+22523963 | None:intergenic |
| TTAAATCCAGGTAAAATGCA+AGG | 0.532782 | 7.2:+22518959 | None:intergenic |
| TTAAATCCAGGTAAAATGCA+AGG | 0.532782 | 7.2:+22524827 | None:intergenic |
| GGAGTAATTGACCTTGGAGG+TGG | 0.533198 | 7.2:-22525173 | MS.gene41697:CDS |
| TATGTTGTCATATTTGATGC+TGG | 0.538638 | 7.2:-22529316 | MS.gene41697:CDS |
| ATATTAATGCAGGCAACCGC+GGG | 0.538900 | 7.2:-22526584 | MS.gene41697:intron |
| ACCAAAAGTGCAACTCGGAT+AGG | 0.539445 | 7.2:+22518000 | None:intergenic |
| ACCAAAAGTGCAACTCGGAT+AGG | 0.539445 | 7.2:+22523852 | None:intergenic |
| CCAAAAGTGCAACTCGGATA+GGG | 0.540474 | 7.2:+22518001 | None:intergenic |
| CCAAAAGTGCAACTCGGATA+GGG | 0.540474 | 7.2:+22523853 | None:intergenic |
| ATAATAATGCAGGCAACCGC+AGG | 0.543205 | 7.2:-22519800 | MS.gene41697:intron |
| AATATTAATGCAGGCAACCG+CGG | 0.543327 | 7.2:-22526585 | MS.gene41697:intron |
| CAAAGTTGGAGCCAGAAGAA+GGG | 0.550749 | 7.2:+22523926 | None:intergenic |
| TCAATATCAGAATTCTGTTG+TGG | 0.555684 | 7.2:-22517292 | MS.gene41697:CDS |
| TCAATATCAGAATTCTGTTG+TGG | 0.555684 | 7.2:-22523280 | MS.gene41697:CDS |
| ATTAAGAAGCTTGTGCTCAA+GGG | 0.561023 | 7.2:-22519203 | MS.gene41697:CDS |
| ATTAAGAAGCTTGTGCTCAA+GGG | 0.561023 | 7.2:-22525071 | MS.gene41697:CDS |
| ATCCGTAAGTCGAGGATAAG+TGG | 0.562884 | 7.2:+22517696 | None:intergenic |
| GAAATCTACTGGATGAAGCA+TGG | 0.572004 | 7.2:+22523616 | None:intergenic |
| AAAGAGATTACAGTAGGTGA+GGG | 0.573833 | 7.2:-22517318 | MS.gene41697:CDS |
| GTGCAACTCGGATAGGGACA+TGG | 0.575560 | 7.2:+22518007 | None:intergenic |
| GTGCAACTCGGATAGGGACA+TGG | 0.575560 | 7.2:+22523859 | None:intergenic |
| TGATATTGAGTTTGTTGACA+AGG | 0.580220 | 7.2:-22521969 | MS.gene41697:intron |
| CTGCATCACGTTGAACGTTG+AGG | 0.583648 | 7.2:+22519597 | None:intergenic |
| AATGCTCCTAAAGTTGCTGA+TGG | 0.585005 | 7.2:-22525107 | MS.gene41697:CDS |
| CCAAGAAGGTTCTTATATGT+GGG | 0.585394 | 7.2:-22526341 | MS.gene41697:intron |
| AAAAGAGATTACAGTAGGTG+AGG | 0.588180 | 7.2:-22517319 | MS.gene41697:CDS |
| ACCAGGTTTGAGTGCATATG+GGG | 0.591814 | 7.2:-22521813 | MS.gene41697:CDS |
| TTTGGAGGAAGCAGAAGATG+TGG | 0.592449 | 7.2:-22521753 | MS.gene41697:CDS |
| GTGGGAGTAATTGACCTTGG+AGG | 0.593027 | 7.2:-22519308 | MS.gene41697:CDS |
| CATGAACAAGCAACACATGT+TGG | 0.594494 | 7.2:+22517638 | None:intergenic |
| AAAGTTGGAGCCAGAAGAAG+GGG | 0.597511 | 7.2:+22518075 | None:intergenic |
| CCAAGAAGGTTCTTATATGT+GGG | 0.599714 | 7.2:-22519555 | MS.gene41697:intron |
| CAAAACACCCCTTAGGCTTG+GGG | 0.599749 | 7.2:-22521711 | MS.gene41697:intron |
| GGTGGAATATGGAATGGTGG+AGG | 0.599785 | 7.2:-22517980 | MS.gene41697:CDS |
| GGTGGAATATGGAATGGTGG+AGG | 0.599785 | 7.2:-22523832 | MS.gene41697:CDS |
| TCTGATCAAAATGGTAAACA+TGG | 0.600597 | 7.2:+22522017 | None:intergenic |
| TCCTAAAGTTGCTGATGGAG+AGG | 0.601540 | 7.2:-22519234 | MS.gene41697:CDS |
| CAAAACACCCCTTAGGCTTG+GGG | 0.601715 | 7.2:-22529012 | MS.gene41697:intron |
| TCAGTGGGAGTAATTGACCT+TGG | 0.602293 | 7.2:-22519311 | MS.gene41697:CDS |
| GACCTTTACATATTCAGGAG+TGG | 0.602637 | 7.2:-22518113 | MS.gene41697:CDS |
| GACCTTTACATATTCAGGAG+TGG | 0.602637 | 7.2:-22523965 | MS.gene41697:CDS |
| CATGAACGAGCAACACATGT+TGG | 0.602847 | 7.2:+22523486 | None:intergenic |
| TCTGATCAAAATGGTAGACA+TGG | 0.603308 | 7.2:+22529275 | None:intergenic |
| TGCTGAAAAGATATTGCAAG+CGG | 0.605130 | 7.2:-22526537 | MS.gene41697:intron |
| ACAATGGGAGTAATTGACCT+TGG | 0.607141 | 7.2:-22525179 | MS.gene41697:CDS |
| ATGGGAGTAATTGACCTTGG+AGG | 0.607884 | 7.2:-22525176 | MS.gene41697:CDS |
| AAAAGCTTCACAAAATCAGT+GGG | 0.611541 | 7.2:-22519326 | MS.gene41697:CDS |
| TAAATCCAGGTAAAATGCAA+GGG | 0.612700 | 7.2:+22518960 | None:intergenic |
| TAAATCCAGGTAAAATGCAA+GGG | 0.612700 | 7.2:+22524828 | None:intergenic |
| GTTGTGATGTAGATCAAACC+AGG | 0.612719 | 7.2:-22521830 | MS.gene41697:intron |
| TCCTAAAGTTGCTGATGGCG+AGG | 0.613319 | 7.2:-22525102 | MS.gene41697:CDS |
| CAAGAAATTACAGTGGGGCA+GGG | 0.615665 | 7.2:-22523306 | MS.gene41697:CDS |
| TAACGCTGATATGGCTTCCA+CGG | 0.618228 | 7.2:+22517245 | None:intergenic |
| AACTTAGATCTACTTCACAT+TGG | 0.619361 | 7.2:-22521995 | MS.gene41697:CDS |
| CCTCAACAAGAAATTACAGT+GGG | 0.620628 | 7.2:-22523312 | MS.gene41697:CDS |
| TTTGGTGGAATATGGAATGG+TGG | 0.623058 | 7.2:-22517983 | MS.gene41697:CDS |
| TTTGGTGGAATATGGAATGG+TGG | 0.623058 | 7.2:-22523835 | MS.gene41697:CDS |
| ACCAGGTTTGAGTGCATACG+CGG | 0.623511 | 7.2:-22529114 | MS.gene41697:CDS |
| AGCAGAAGATGTGGTTCCTG+AGG | 0.623737 | 7.2:-22521744 | MS.gene41697:CDS |
| AAAGTTGGAGCCAGAAGAAG+GGG | 0.628741 | 7.2:+22523927 | None:intergenic |
| TGCTGAAAAGATATTGCAAG+CGG | 0.630726 | 7.2:-22519753 | MS.gene41697:intron |
| ATCCAAAAGCCTTAAACCCG+CGG | 0.630783 | 7.2:+22526568 | None:intergenic |
| AAACTCACCCCAAGCCTAAG+GGG | 0.631016 | 7.2:+22529005 | None:intergenic |
| TTTGAACTGAACCACCTCCA+AGG | 0.632699 | 7.2:+22519294 | None:intergenic |
| TTTGAACTGAACCACCTCCA+AGG | 0.632699 | 7.2:+22525162 | None:intergenic |
| AAACTCACCCCAAGCCTAAG+GGG | 0.632954 | 7.2:+22521704 | None:intergenic |
| CAAAATGGTAGACATGGACA+CGG | 0.633528 | 7.2:+22529281 | None:intergenic |
| CATTTATCCTCGTCTTACGG+AGG | 0.636034 | 7.2:-22523543 | MS.gene41697:CDS |
| ATTCTGTTGTGGAAGCTGCA+TGG | 0.638309 | 7.2:-22517281 | MS.gene41697:CDS |
| ATTCTGTTGTGGAAGCTGCA+TGG | 0.638309 | 7.2:-22523269 | MS.gene41697:CDS |
| CCACGAAAAGAGATTACAGT+AGG | 0.642945 | 7.2:-22517324 | MS.gene41697:CDS |
| TGATATTGAGTTTGTTGACA+AGG | 0.645926 | 7.2:-22529227 | MS.gene41697:intron |
| AAAACGTCCATATGTATGCA+TGG | 0.646148 | 7.2:-22517671 | MS.gene41697:CDS |
| TGCACCCCAAAACACCCCTT+AGG | 0.647295 | 7.2:-22521718 | MS.gene41697:CDS |
| AAAACGTCCATATGTATGCA+TGG | 0.648697 | 7.2:-22523519 | MS.gene41697:CDS |
| ATTCAAAAGCCTCAAACCTG+CGG | 0.651264 | 7.2:+22519784 | None:intergenic |
| TGCACTCCAAAACACCCCTT+AGG | 0.653249 | 7.2:-22529019 | MS.gene41697:CDS |
| ATTCCACCAAAAGTGCAACT+CGG | 0.665214 | 7.2:+22517995 | None:intergenic |
| ATTCCACCAAAAGTGCAACT+CGG | 0.665214 | 7.2:+22523847 | None:intergenic |
| GATGTTATATAGATCAAACC+AGG | 0.666409 | 7.2:-22529131 | MS.gene41697:intron |
| TGACAGTTAACTATGTATTG+GGG | 0.677718 | 7.2:-22519358 | MS.gene41697:CDS |
| TGACAGTTAACTATGTATTG+GGG | 0.677718 | 7.2:-22525226 | MS.gene41697:CDS |
| ATCAAATATGACAACATACG+AGG | 0.698857 | 7.2:+22529321 | None:intergenic |
| TCCTCAACAAGAAATTACAG+TGG | 0.705806 | 7.2:-22523313 | MS.gene41697:CDS |
| ATGGCCTCTAGGTACTGCCG+TGG | 0.707657 | 7.2:-22517262 | MS.gene41697:CDS |
| AAAATGGTAGACATGGACAC+GGG | 0.710777 | 7.2:+22529282 | None:intergenic |
| GCTTCCACGGCAGTACCTAG+AGG | 0.713599 | 7.2:+22517258 | None:intergenic |
| CTCAACAAGAAATTACAGTG+GGG | 0.779971 | 7.2:-22523311 | MS.gene41697:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 22517212 | 22529467 | 22517212 | ID=MS.gene41697 |
| chr7.2 | mRNA | 22517212 | 22529467 | 22517212 | ID=MS.gene41697.t1;Parent=MS.gene41697 |
| chr7.2 | exon | 22529228 | 22529467 | 22529228 | ID=MS.gene41697.t1.exon1;Parent=MS.gene41697.t1 |
| chr7.2 | CDS | 22529228 | 22529467 | 22529228 | ID=cds.MS.gene41697.t1;Parent=MS.gene41697.t1 |
| chr7.2 | exon | 22529013 | 22529141 | 22529013 | ID=MS.gene41697.t1.exon2;Parent=MS.gene41697.t1 |
| chr7.2 | CDS | 22529013 | 22529141 | 22529013 | ID=cds.MS.gene41697.t1;Parent=MS.gene41697.t1 |
| chr7.2 | exon | 22526538 | 22526594 | 22526538 | ID=MS.gene41697.t1.exon3;Parent=MS.gene41697.t1 |
| chr7.2 | CDS | 22526538 | 22526594 | 22526538 | ID=cds.MS.gene41697.t1;Parent=MS.gene41697.t1 |
| chr7.2 | exon | 22526342 | 22526434 | 22526342 | ID=MS.gene41697.t1.exon4;Parent=MS.gene41697.t1 |
| chr7.2 | CDS | 22526342 | 22526434 | 22526342 | ID=cds.MS.gene41697.t1;Parent=MS.gene41697.t1 |
| chr7.2 | exon | 22525044 | 22525249 | 22525044 | ID=MS.gene41697.t1.exon5;Parent=MS.gene41697.t1 |
| chr7.2 | CDS | 22525044 | 22525249 | 22525044 | ID=cds.MS.gene41697.t1;Parent=MS.gene41697.t1 |
| chr7.2 | exon | 22524825 | 22524916 | 22524825 | ID=MS.gene41697.t1.exon6;Parent=MS.gene41697.t1 |
| chr7.2 | CDS | 22524825 | 22524916 | 22524825 | ID=cds.MS.gene41697.t1;Parent=MS.gene41697.t1 |
| chr7.2 | exon | 22523774 | 22523988 | 22523774 | ID=MS.gene41697.t1.exon7;Parent=MS.gene41697.t1 |
| chr7.2 | CDS | 22523774 | 22523988 | 22523774 | ID=cds.MS.gene41697.t1;Parent=MS.gene41697.t1 |
| chr7.2 | exon | 22523480 | 22523669 | 22523480 | ID=MS.gene41697.t1.exon8;Parent=MS.gene41697.t1 |
| chr7.2 | CDS | 22523480 | 22523669 | 22523480 | ID=cds.MS.gene41697.t1;Parent=MS.gene41697.t1 |
| chr7.2 | exon | 22523262 | 22523342 | 22523262 | ID=MS.gene41697.t1.exon9;Parent=MS.gene41697.t1 |
| chr7.2 | CDS | 22523262 | 22523342 | 22523262 | ID=cds.MS.gene41697.t1;Parent=MS.gene41697.t1 |
| chr7.2 | exon | 22521970 | 22522136 | 22521970 | ID=MS.gene41697.t1.exon10;Parent=MS.gene41697.t1 |
| chr7.2 | CDS | 22521970 | 22522136 | 22521970 | ID=cds.MS.gene41697.t1;Parent=MS.gene41697.t1 |
| chr7.2 | exon | 22521712 | 22521840 | 22521712 | ID=MS.gene41697.t1.exon11;Parent=MS.gene41697.t1 |
| chr7.2 | CDS | 22521712 | 22521840 | 22521712 | ID=cds.MS.gene41697.t1;Parent=MS.gene41697.t1 |
| chr7.2 | exon | 22519754 | 22519810 | 22519754 | ID=MS.gene41697.t1.exon12;Parent=MS.gene41697.t1 |
| chr7.2 | CDS | 22519754 | 22519810 | 22519754 | ID=cds.MS.gene41697.t1;Parent=MS.gene41697.t1 |
| chr7.2 | exon | 22519556 | 22519648 | 22519556 | ID=MS.gene41697.t1.exon13;Parent=MS.gene41697.t1 |
| chr7.2 | CDS | 22519556 | 22519648 | 22519556 | ID=cds.MS.gene41697.t1;Parent=MS.gene41697.t1 |
| chr7.2 | exon | 22519176 | 22519381 | 22519176 | ID=MS.gene41697.t1.exon14;Parent=MS.gene41697.t1 |
| chr7.2 | CDS | 22519176 | 22519381 | 22519176 | ID=cds.MS.gene41697.t1;Parent=MS.gene41697.t1 |
| chr7.2 | exon | 22518957 | 22519048 | 22518957 | ID=MS.gene41697.t1.exon15;Parent=MS.gene41697.t1 |
| chr7.2 | CDS | 22518957 | 22519048 | 22518957 | ID=cds.MS.gene41697.t1;Parent=MS.gene41697.t1 |
| chr7.2 | exon | 22517922 | 22518136 | 22517922 | ID=MS.gene41697.t1.exon16;Parent=MS.gene41697.t1 |
| chr7.2 | CDS | 22517922 | 22518136 | 22517922 | ID=cds.MS.gene41697.t1;Parent=MS.gene41697.t1 |
| chr7.2 | exon | 22517632 | 22517821 | 22517632 | ID=MS.gene41697.t1.exon17;Parent=MS.gene41697.t1 |
| chr7.2 | CDS | 22517632 | 22517821 | 22517632 | ID=cds.MS.gene41697.t1;Parent=MS.gene41697.t1 |
| chr7.2 | exon | 22517212 | 22517354 | 22517212 | ID=MS.gene41697.t1.exon18;Parent=MS.gene41697.t1 |
| chr7.2 | CDS | 22517212 | 22517354 | 22517212 | ID=cds.MS.gene41697.t1;Parent=MS.gene41697.t1 |
| Gene Sequence |
| Protein sequence |