Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41793.t1 | ABD33256.2 | 80.3 | 157 | 19 | 2 | 1 | 145 | 12 | 168 | 1.10E-51 | 213 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41793.t1 | G7L1J1 | 80.3 | 157 | 19 | 2 | 1 | 145 | 1 | 157 | 7.8e-52 | 213.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene41793 | 0.807533 | 4.83E-50 | -1.69E-46 |
| MS.gene054479 | MS.gene41793 | 0.806478 | 8.07E-50 | -1.69E-46 |
| MS.gene05761 | MS.gene41793 | 0.800227 | 1.59E-48 | -1.69E-46 |
| MS.gene058146 | MS.gene41793 | 0.807462 | 5.00E-50 | -1.69E-46 |
| MS.gene060683 | MS.gene41793 | 0.802035 | 6.79E-49 | -1.69E-46 |
| MS.gene060685 | MS.gene41793 | 0.805968 | 1.03E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41793.t1 | MTR_7g086580 | 83.234 | 167 | 16 | 2 | 1 | 155 | 1 | 167 | 5.84e-84 | 245 |
| MS.gene41793.t1 | MTR_7g086730 | 44.444 | 135 | 41 | 3 | 42 | 146 | 385 | 515 | 3.65e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 21 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATGCAAGAAGATAATA+TGG | 0.244685 | 7.4:-21121787 | MS.gene41793:CDS |
| GTTCAAGAAGGGAGGATTAC+TGG | 0.300761 | 7.4:+21117828 | None:intergenic |
| ATCATGCTACAAGGATGAAT+TGG | 0.329507 | 7.4:-21122168 | MS.gene41793:CDS |
| AGAAGATAATATGGGAAAAT+CGG | 0.365645 | 7.4:-21121778 | MS.gene41793:CDS |
| TGAATCTGCTGTTGCAACTT+TGG | 0.378209 | 7.4:-21121429 | MS.gene41793:CDS |
| TAAAATGCTACTTAGGTTGA+TGG | 0.413008 | 7.4:-21121833 | MS.gene41793:intron |
| AGCAGTTGCAGCAGCTAAGA+AGG | 0.468010 | 7.4:-21121516 | MS.gene41793:CDS |
| TCATGCTACAAGGATGAATT+GGG | 0.473692 | 7.4:-21122167 | MS.gene41793:CDS |
| GGAAAAGAGTTCAAGAAGGG+AGG | 0.530685 | 7.4:+21117820 | None:intergenic |
| CTCTGATATCGACGACGAAG+AGG | 0.535143 | 7.4:-21122138 | MS.gene41793:intron |
| TTGTATGTACCTCATCCTCT+TGG | 0.538819 | 7.4:+21121753 | None:intergenic |
| GCATCTCTTTCTCGTTGCAA+AGG | 0.540391 | 7.4:+21121807 | None:intergenic |
| AAAAGGAAAAGAGTTCAAGA+AGG | 0.547419 | 7.4:+21117816 | None:intergenic |
| AAAATGCTACTTAGGTTGAT+GGG | 0.556262 | 7.4:-21121832 | MS.gene41793:intron |
| GCAATGCAAGAAGATAATAT+GGG | 0.581162 | 7.4:-21121786 | MS.gene41793:CDS |
| AAAGGAAAAGAGTTCAAGAA+GGG | 0.583128 | 7.4:+21117817 | None:intergenic |
| TTTGAATAAATGTACTATGG+AGG | 0.588379 | 7.4:-21121477 | MS.gene41793:CDS |
| AAATCGGAACCAAGAGGATG+AGG | 0.600852 | 7.4:-21121762 | MS.gene41793:intron |
| AACTTTGGCAAAATTCAGAA+CGG | 0.631746 | 7.4:-21121414 | MS.gene41793:intron |
| ATGGGAAAATCGGAACCAAG+AGG | 0.689281 | 7.4:-21121768 | MS.gene41793:CDS |
| ACTGTGTGAATCATGCTACA+AGG | 0.702948 | 7.4:-21122177 | MS.gene41793:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATCATATTCTAATTTAA+TGG | + | chr7.4:21118857-21118876 | None:intergenic | 10.0% |
| !!! | ATTTATTATTAGTATTTTGT+TGG | - | chr7.4:21118511-21118530 | MS.gene41793:intron | 10.0% |
| !!! | TCATTTATATTAGTTTTAAA+TGG | - | chr7.4:21120318-21120337 | MS.gene41793:intron | 10.0% |
| !! | CATTTAATTATGAAAAAACA+TGG | + | chr7.4:21120115-21120134 | None:intergenic | 15.0% |
| !! | TGAAAAATACTATTAGTATT+TGG | + | chr7.4:21122139-21122158 | None:intergenic | 15.0% |
| !! | TTAGTTACAATTAGTTAAAA+GGG | - | chr7.4:21119957-21119976 | MS.gene41793:intron | 15.0% |
| !! | TTCAAAATAAATCTGAAAAT+AGG | + | chr7.4:21118069-21118088 | None:intergenic | 15.0% |
| !!! | AGTCTTTTATTAGTAAAAAA+AGG | - | chr7.4:21119252-21119271 | MS.gene41793:intron | 15.0% |
| !!! | ATCTATTTATTGATTGTTTT+AGG | - | chr7.4:21119876-21119895 | MS.gene41793:intron | 15.0% |
| !!! | GTCTTTTATTAGTAAAAAAA+GGG | - | chr7.4:21119253-21119272 | MS.gene41793:intron | 15.0% |
| !!! | TATTATTTTAGATAAGTTTG+AGG | - | chr7.4:21121979-21121998 | MS.gene41793:intron | 15.0% |
| !!! | TATTTTGAATAAATGTACTA+TGG | - | chr7.4:21118631-21118650 | MS.gene41793:intron | 15.0% |
| !!! | TTACATTTTTAACACAATTT+AGG | + | chr7.4:21118798-21118817 | None:intergenic | 15.0% |
| !!! | TTCTTATTTATTCCATAATT+TGG | - | chr7.4:21121096-21121115 | MS.gene41793:intron | 15.0% |
| !! | AGATAAAATATCGAAAGAAA+TGG | + | chr7.4:21120519-21120538 | None:intergenic | 20.0% |
| !! | ATAAGTTAATAACAACGTAA+AGG | + | chr7.4:21120637-21120656 | None:intergenic | 20.0% |
| !! | ATTAACACCATATTAGAATT+TGG | + | chr7.4:21121353-21121372 | None:intergenic | 20.0% |
| !! | ATTGCAACTCAAATAAATTT+AGG | + | chr7.4:21120670-21120689 | None:intergenic | 20.0% |
| !! | GAAACAAAATAAGAAAACAA+CGG | + | chr7.4:21119666-21119685 | None:intergenic | 20.0% |
| !! | GTTAGTTACAATTAGTTAAA+AGG | - | chr7.4:21119956-21119975 | MS.gene41793:intron | 20.0% |
| !! | TATACCATAATCATATTCAA+AGG | - | chr7.4:21119318-21119337 | MS.gene41793:intron | 20.0% |
| !! | TATGGTTGATTAGTATAATT+TGG | + | chr7.4:21119472-21119491 | None:intergenic | 20.0% |
| !! | TGAAATAATGGTTTAATGAA+GGG | - | chr7.4:21121280-21121299 | MS.gene41793:intron | 20.0% |
| !! | TTAACACCATATTAGAATTT+GGG | + | chr7.4:21121352-21121371 | None:intergenic | 20.0% |
| !! | TTATTAGTAAAAAAAGGGTT+TGG | - | chr7.4:21119258-21119277 | MS.gene41793:intron | 20.0% |
| !! | TTGAAATAATGGTTTAATGA+AGG | - | chr7.4:21121279-21121298 | MS.gene41793:intron | 20.0% |
| !!! | ACCAACTTGAAAATATTTTT+TGG | - | chr7.4:21121502-21121521 | MS.gene41793:CDS | 20.0% |
| !!! | CATCTTCAAATAATTTTTCA+AGG | + | chr7.4:21122207-21122226 | None:intergenic | 20.0% |
| !!! | GAAAATATTTTTTGGCAATA+TGG | - | chr7.4:21121510-21121529 | MS.gene41793:CDS | 20.0% |
| !!! | GATCTTCAAATAATTTTTCA+AGG | + | chr7.4:21122237-21122256 | None:intergenic | 20.0% |
| !!! | TGTTTCTTTTATTTAAGCTA+AGG | - | chr7.4:21120223-21120242 | MS.gene41793:intron | 20.0% |
| !!! | TTTCAGATTTATTTTGAACA+TGG | - | chr7.4:21118071-21118090 | MS.gene41793:intron | 20.0% |
| ! | AAATAAAAGAAACACACATC+AGG | + | chr7.4:21120217-21120236 | None:intergenic | 25.0% |
| ! | AATAAATAAATAACCGTACG+AGG | + | chr7.4:21119129-21119148 | None:intergenic | 25.0% |
| ! | AATAATAAATAGCAAACCAG+TGG | + | chr7.4:21118501-21118520 | None:intergenic | 25.0% |
| ! | ACAACCTTTGAATATGATTA+TGG | + | chr7.4:21119325-21119344 | None:intergenic | 25.0% |
| ! | ACATTGATCATTGAAGTTAT+GGG | + | chr7.4:21119382-21119401 | None:intergenic | 25.0% |
| ! | AGAAATACAAGTCCAAATTA+TGG | + | chr7.4:21121111-21121130 | None:intergenic | 25.0% |
| ! | AGAAGATAATATGGGAAAAT+CGG | - | chr7.4:21118333-21118352 | MS.gene41793:intron | 25.0% |
| ! | AGAATTTATGCTATGTATTC+AGG | - | chr7.4:21119786-21119805 | MS.gene41793:intron | 25.0% |
| ! | ATAAGTCAAAAACACACATA+TGG | + | chr7.4:21122011-21122030 | None:intergenic | 25.0% |
| ! | ATCATACCCAAATTCTAATA+TGG | - | chr7.4:21121343-21121362 | MS.gene41793:intron | 25.0% |
| ! | ATTGTTCAAAAACTTGAACT+GGG | - | chr7.4:21118452-21118471 | MS.gene41793:intron | 25.0% |
| ! | ATTTATTGTCATAGTAGTGT+TGG | - | chr7.4:21118392-21118411 | MS.gene41793:intron | 25.0% |
| ! | CCATTAAATTGTTTATCGAT+AGG | + | chr7.4:21118919-21118938 | None:intergenic | 25.0% |
| ! | CCTATCGATAAACAATTTAA+TGG | - | chr7.4:21118916-21118935 | MS.gene41793:intron | 25.0% |
| ! | CTCAAAAAATCATATCATGT+AGG | - | chr7.4:21118962-21118981 | MS.gene41793:intron | 25.0% |
| ! | CTCAACTTTATATTTCTTTC+AGG | - | chr7.4:21118556-21118575 | MS.gene41793:intron | 25.0% |
| ! | CTCTTTAAATACACTATTGT+AGG | - | chr7.4:21120461-21120480 | MS.gene41793:intron | 25.0% |
| ! | GAATTTATGCTATGTATTCA+GGG | - | chr7.4:21119787-21119806 | MS.gene41793:intron | 25.0% |
| ! | GTATTCAATTAACCTATTCT+GGG | - | chr7.4:21120765-21120784 | MS.gene41793:intron | 25.0% |
| ! | GTTAGACTATATCAAATATC+AGG | - | chr7.4:21119078-21119097 | MS.gene41793:intron | 25.0% |
| ! | TAATTTGGACTTGTATTTCT+TGG | - | chr7.4:21121111-21121130 | MS.gene41793:intron | 25.0% |
| ! | TAGTGATATGGTTGAAATAA+TGG | - | chr7.4:21121268-21121287 | MS.gene41793:intron | 25.0% |
| ! | TATGAAAATCAAGCATTTGA+TGG | - | chr7.4:21121052-21121071 | MS.gene41793:intron | 25.0% |
| ! | TATTCAATTAACCTATTCTG+GGG | - | chr7.4:21120766-21120785 | MS.gene41793:intron | 25.0% |
| ! | TGAACAATCATGATAGAATA+TGG | + | chr7.4:21118440-21118459 | None:intergenic | 25.0% |
| ! | TGACAAGTGTTACAAAAATT+TGG | + | chr7.4:21120939-21120958 | None:intergenic | 25.0% |
| ! | TGGTCATAAACTTATAACAT+GGG | + | chr7.4:21119022-21119041 | None:intergenic | 25.0% |
| ! | TGTATTCAATTAACCTATTC+TGG | - | chr7.4:21120764-21120783 | MS.gene41793:intron | 25.0% |
| ! | TTATGTACAAATAGTTGTAC+TGG | - | chr7.4:21122027-21122046 | MS.gene41793:intron | 25.0% |
| ! | TTATTTCAACCATATCACTA+AGG | + | chr7.4:21121268-21121287 | None:intergenic | 25.0% |
| ! | TTTGAATAAATGTACTATGG+AGG | - | chr7.4:21118634-21118653 | MS.gene41793:intron | 25.0% |
| !! | ACTCTAATCTATGTTTTCTA+AGG | - | chr7.4:21118828-21118847 | MS.gene41793:intron | 25.0% |
| !! | ATTTTGAACATGGTCTTTTT+GGG | - | chr7.4:21118081-21118100 | MS.gene41793:intron | 25.0% |
| !! | CAATCATTGATTAGTACTAT+TGG | + | chr7.4:21121778-21121797 | None:intergenic | 25.0% |
| !! | CGTCTTCAAATAATTTTTCA+AGG | + | chr7.4:21122261-21122280 | None:intergenic | 25.0% |
| !! | TATTGTCTAAAATCCAAAAC+CGG | - | chr7.4:21121587-21121606 | MS.gene41793:intron | 25.0% |
| !! | TTTCATTGGTAAATTTTCCA+GGG | + | chr7.4:21119637-21119656 | None:intergenic | 25.0% |
| !!! | AAAGTCAACTATTTTGATCT+TGG | - | chr7.4:21117911-21117930 | MS.gene41793:CDS | 25.0% |
| !!! | AAATAATTTTTCAAGGCGAT+CGG | + | chr7.4:21122200-21122219 | None:intergenic | 25.0% |
| !!! | ATGACTGTTACATTGTTTTT+TGG | - | chr7.4:21118039-21118058 | MS.gene41793:intron | 25.0% |
| !!! | ATTCATTGTTTTGCAATTCA+TGG | + | chr7.4:21117844-21117863 | None:intergenic | 25.0% |
| !!! | ATTTTAACAGCAAGAATAGT+CGG | + | chr7.4:21118264-21118283 | None:intergenic | 25.0% |
| !!! | GACTAAAAGCATATAACTTT+TGG | - | chr7.4:21120438-21120457 | MS.gene41793:intron | 25.0% |
| !!! | GCCAAAAAATATTTTCAAGT+TGG | + | chr7.4:21121506-21121525 | None:intergenic | 25.0% |
| !!! | GTTTTAGTCTTCTAGATAAA+AGG | + | chr7.4:21119360-21119379 | None:intergenic | 25.0% |
| !!! | TATTTTGAACATGGTCTTTT+TGG | - | chr7.4:21118080-21118099 | MS.gene41793:intron | 25.0% |
| AAACAGAAGTAAATTTGGAG+AGG | + | chr7.4:21118137-21118156 | None:intergenic | 30.0% | |
| AAAGTCTATCCCAAATTTGT+TGG | - | chr7.4:21121374-21121393 | MS.gene41793:intron | 30.0% | |
| AACTTTGGCAAAATTCAGAA+CGG | - | chr7.4:21118697-21118716 | MS.gene41793:intron | 30.0% | |
| AATACTTCTTCTACCTTAAG+TGG | + | chr7.4:21121858-21121877 | None:intergenic | 30.0% | |
| ACAAAATAAGAAAACAACGG+TGG | + | chr7.4:21119663-21119682 | None:intergenic | 30.0% | |
| ACAGTTAAAATAAATCAGCC+TGG | + | chr7.4:21120069-21120088 | None:intergenic | 30.0% | |
| AGAACTAATCCTTAGTGATA+TGG | - | chr7.4:21121256-21121275 | MS.gene41793:intron | 30.0% | |
| AGACTCTAAATCCCATTAAA+TGG | + | chr7.4:21119237-21119256 | None:intergenic | 30.0% | |
| ATAAACTTATAACATGGGAC+AGG | + | chr7.4:21119017-21119036 | None:intergenic | 30.0% | |
| ATAAAGCTACGCATAACTAT+TGG | + | chr7.4:21120395-21120414 | None:intergenic | 30.0% | |
| ATCCCATTAAATGGAGAAAT+TGG | + | chr7.4:21119228-21119247 | None:intergenic | 30.0% | |
| ATCCTTTGCCTCTAATAAAA+GGG | - | chr7.4:21121931-21121950 | MS.gene41793:intron | 30.0% | |
| ATGAAAAAACATGGACATAG+AGG | + | chr7.4:21120106-21120125 | None:intergenic | 30.0% | |
| ATGTTGCAAGCTTCTATTAA+AGG | + | chr7.4:21120040-21120059 | None:intergenic | 30.0% | |
| ATTAATATCAACACTGTCAG+AGG | - | chr7.4:21121659-21121678 | MS.gene41793:intron | 30.0% | |
| ATTTGTCACAAGATAAATCC+AGG | - | chr7.4:21120904-21120923 | MS.gene41793:intron | 30.0% | |
| CACATTGATCATTGAAGTTA+TGG | + | chr7.4:21119383-21119402 | None:intergenic | 30.0% | |
| CATAACTTCAATGATCAATG+TGG | - | chr7.4:21119381-21119400 | MS.gene41793:intron | 30.0% | |
| CTGGTCATAAACTTATAACA+TGG | + | chr7.4:21119023-21119042 | None:intergenic | 30.0% | |
| CTTGTCATATATGTCTTCTT+AGG | - | chr7.4:21120952-21120971 | MS.gene41793:intron | 30.0% | |
| GACATCTGTTAGTTAGTTAT+AGG | - | chr7.4:21119913-21119932 | MS.gene41793:intron | 30.0% | |
| GAGCAATATAAGATTAGTGT+TGG | - | chr7.4:21122060-21122079 | MS.gene41793:intron | 30.0% | |
| GATTGTTCAAAAACTTGAAC+TGG | - | chr7.4:21118451-21118470 | MS.gene41793:intron | 30.0% | |
| GCAACAAACAGAAGTAAATT+TGG | + | chr7.4:21118142-21118161 | None:intergenic | 30.0% | |
| GCAATGAATATCCTAAAAGA+AGG | - | chr7.4:21120685-21120704 | MS.gene41793:intron | 30.0% | |
| GCAATGCAAGAAGATAATAT+GGG | - | chr7.4:21118325-21118344 | MS.gene41793:intron | 30.0% | |
| TAAAGCAGTCATACATATCT+AGG | - | chr7.4:21120989-21121008 | MS.gene41793:intron | 30.0% | |
| TACAAGAAAAAACAGAACTC+AGG | - | chr7.4:21121749-21121768 | MS.gene41793:intron | 30.0% | |
| TCCCAATTTCTCCATTTAAT+GGG | - | chr7.4:21119223-21119242 | MS.gene41793:intron | 30.0% | |
| TCCCATTAAATGGAGAAATT+GGG | + | chr7.4:21119227-21119246 | None:intergenic | 30.0% | |
| TGCAATGCAAGAAGATAATA+TGG | - | chr7.4:21118324-21118343 | MS.gene41793:intron | 30.0% | |
| TGCTTACACTTTAATCATGT+GGG | - | chr7.4:21119054-21119073 | MS.gene41793:intron | 30.0% | |
| TGTTCTGCTATTACATTACT+TGG | + | chr7.4:21120194-21120213 | None:intergenic | 30.0% | |
| TTCCCAATTTCTCCATTTAA+TGG | - | chr7.4:21119222-21119241 | MS.gene41793:intron | 30.0% | |
| TTGCTTACACTTTAATCATG+TGG | - | chr7.4:21119053-21119072 | MS.gene41793:intron | 30.0% | |
| TTGGTGAAGTTTCATAACTT+AGG | + | chr7.4:21119453-21119472 | None:intergenic | 30.0% | |
| TTTAAATGGAACACCATTCT+TGG | - | chr7.4:21120332-21120351 | MS.gene41793:intron | 30.0% | |
| TTTGTTTCAGAATCTGTTGA+TGG | - | chr7.4:21119678-21119697 | MS.gene41793:intron | 30.0% | |
| ! | AAGTCTATCCCAAATTTGTT+GGG | - | chr7.4:21121375-21121394 | MS.gene41793:intron | 30.0% |
| ! | AGTATTTAGTTTACCTCGTA+CGG | - | chr7.4:21119113-21119132 | MS.gene41793:intron | 30.0% |
| ! | ATTGTCTAAAATCCAAAACC+GGG | - | chr7.4:21121588-21121607 | MS.gene41793:intron | 30.0% |
| ! | GTTTCATTGGTAAATTTTCC+AGG | + | chr7.4:21119638-21119657 | None:intergenic | 30.0% |
| ! | TAATAGCTTCCAATTAGCTT+TGG | + | chr7.4:21119767-21119786 | None:intergenic | 30.0% |
| ! | TGATGTCCTTGTAATTGTTT+TGG | + | chr7.4:21121169-21121188 | None:intergenic | 30.0% |
| ! | TTCATTGGTAAATTTTCCAG+GGG | + | chr7.4:21119636-21119655 | None:intergenic | 30.0% |
| ! | TTGCTGTTAAAATGCTACTT+AGG | - | chr7.4:21118271-21118290 | MS.gene41793:intron | 30.0% |
| !! | AAAATGCTACTTAGGTTGAT+GGG | - | chr7.4:21118279-21118298 | MS.gene41793:intron | 30.0% |
| !! | AATCTTTTCTAGTATGAACC+CGG | + | chr7.4:21121609-21121628 | None:intergenic | 30.0% |
| !! | AGAGATGATGTTTTGGATTA+AGG | - | chr7.4:21120708-21120727 | MS.gene41793:intron | 30.0% |
| !! | TAAAATGCTACTTAGGTTGA+TGG | - | chr7.4:21118278-21118297 | MS.gene41793:intron | 30.0% |
| !! | TAACTTAGGAAACTTGTTAG+TGG | + | chr7.4:21119439-21119458 | None:intergenic | 30.0% |
| !!! | CAAGTTTTCTAGAATAGCTT+AGG | + | chr7.4:21120812-21120831 | None:intergenic | 30.0% |
| AAAATTTGGAAGAGCTTACC+TGG | + | chr7.4:21120925-21120944 | None:intergenic | 35.0% | |
| AAATAAGAAAACAACGGTGG+TGG | + | chr7.4:21119660-21119679 | None:intergenic | 35.0% | |
| AACACCATTCTTGGATGTAT+AGG | - | chr7.4:21120341-21120360 | MS.gene41793:intron | 35.0% | |
| ACAATGTAACAGTCATTTGC+AGG | + | chr7.4:21118035-21118054 | None:intergenic | 35.0% | |
| ATCATGCTACAAGGATGAAT+TGG | - | chr7.4:21117943-21117962 | MS.gene41793:intron | 35.0% | |
| ATTTGTGACGATCTCACTAA+AGG | + | chr7.4:21118742-21118761 | None:intergenic | 35.0% | |
| CATCCTTTGCCTCTAATAAA+AGG | - | chr7.4:21121930-21121949 | MS.gene41793:intron | 35.0% | |
| CCAGATATATAGAGCAATGA+TGG | + | chr7.4:21120261-21120280 | None:intergenic | 35.0% | |
| CCATCATTGCTCTATATATC+TGG | - | chr7.4:21120258-21120277 | MS.gene41793:intron | 35.0% | |
| CTTACACTTTAATCATGTGG+GGG | - | chr7.4:21119056-21119075 | MS.gene41793:intron | 35.0% | |
| GATACAACAAACAGAACTGA+TGG | + | chr7.4:21119566-21119585 | None:intergenic | 35.0% | |
| GCAAAGGATGCTTACATATA+GGG | + | chr7.4:21121920-21121939 | None:intergenic | 35.0% | |
| GCTTACACTTTAATCATGTG+GGG | - | chr7.4:21119055-21119074 | MS.gene41793:intron | 35.0% | |
| GGACTTCCAAAACAATTACA+AGG | - | chr7.4:21121160-21121179 | MS.gene41793:intron | 35.0% | |
| GTAAATCGTAGAGAATACAG+CGG | + | chr7.4:21119534-21119553 | None:intergenic | 35.0% | |
| GTAGTTGTCCTAATAATGAG+TGG | + | chr7.4:21121401-21121420 | None:intergenic | 35.0% | |
| GTGGAACGAAATGACTTATT+TGG | + | chr7.4:21119722-21119741 | None:intergenic | 35.0% | |
| TAAACGAATTTCCCCAGAAT+AGG | + | chr7.4:21120780-21120799 | None:intergenic | 35.0% | |
| TAGTCCTTACCACAATCAAT+AGG | + | chr7.4:21119985-21120004 | None:intergenic | 35.0% | |
| TCATGCTACAAGGATGAATT+GGG | - | chr7.4:21117944-21117963 | MS.gene41793:intron | 35.0% | |
| TCGACAATAATTGCACTTTG+AGG | - | chr7.4:21121685-21121704 | MS.gene41793:intron | 35.0% | |
| TGCTATTACATTACTTGGCT+TGG | + | chr7.4:21120189-21120208 | None:intergenic | 35.0% | |
| TTAAGCTAAGGAGTCAAGAA+AGG | - | chr7.4:21120235-21120254 | MS.gene41793:intron | 35.0% | |
| TTCAAAGAAGAGCTAAGCAT+TGG | + | chr7.4:21121541-21121560 | None:intergenic | 35.0% | |
| TTCTACCTTAAGTGGAATGA+AGG | + | chr7.4:21121850-21121869 | None:intergenic | 35.0% | |
| TTGACCTATACATCCAAGAA+TGG | + | chr7.4:21120348-21120367 | None:intergenic | 35.0% | |
| ! | AAGAAGGAGAGATGATGTTT+TGG | - | chr7.4:21120701-21120720 | MS.gene41793:intron | 35.0% |
| ! | ACATCATCTCTCCTTCTTTT+AGG | + | chr7.4:21120699-21120718 | None:intergenic | 35.0% |
| ! | AGCATACTTATGTTTTCCAC+TGG | - | chr7.4:21118482-21118501 | MS.gene41793:intron | 35.0% |
| ! | CAGATTTTCGAACTTGTGTA+TGG | + | chr7.4:21119490-21119509 | None:intergenic | 35.0% |
| ! | TCTAAGCACCCTTTTATTAG+AGG | + | chr7.4:21121942-21121961 | None:intergenic | 35.0% |
| ! | TGCTTAGATATAGTGATGGA+GGG | - | chr7.4:21121954-21121973 | MS.gene41793:intron | 35.0% |
| ! | TTCACCTGTATCTTTTGTAG+AGG | - | chr7.4:21122155-21122174 | MS.gene41793:CDS | 35.0% |
| AATGAGTGGCCCAACAAATT+TGG | + | chr7.4:21121387-21121406 | None:intergenic | 40.0% | |
| ACAACAAACAGAACTGATGG+AGG | + | chr7.4:21119563-21119582 | None:intergenic | 40.0% | |
| ACTGTGTGAATCATGCTACA+AGG | - | chr7.4:21117934-21117953 | MS.gene41793:CDS | 40.0% | |
| AGCTTGCAACATCTTATTCC+AGG | - | chr7.4:21120048-21120067 | MS.gene41793:intron | 40.0% | |
| AGGATGCTTACATATAGGGA+CGG | + | chr7.4:21121916-21121935 | None:intergenic | 40.0% | |
| ATAAGTAAGTGTGCCTGTGT+GGG | + | chr7.4:21120587-21120606 | None:intergenic | 40.0% | |
| ATGAGTGGCCCAACAAATTT+GGG | + | chr7.4:21121386-21121405 | None:intergenic | 40.0% | |
| CACAACCTTCATTCCACTTA+AGG | - | chr7.4:21121842-21121861 | MS.gene41793:intron | 40.0% | |
| CTTAAGTGGAATGAAGGTTG+TGG | + | chr7.4:21121844-21121863 | None:intergenic | 40.0% | |
| CTTGTTAGTGGAATAGTGAC+AGG | + | chr7.4:21119427-21119446 | None:intergenic | 40.0% | |
| GGCAAAGGATGCTTACATAT+AGG | + | chr7.4:21121921-21121940 | None:intergenic | 40.0% | |
| GTAGGAAATTGTACTGTCTC+TGG | - | chr7.4:21118980-21118999 | MS.gene41793:intron | 40.0% | |
| GTGCTTAGATATAGTGATGG+AGG | - | chr7.4:21121953-21121972 | MS.gene41793:intron | 40.0% | |
| TATAAGTAAGTGTGCCTGTG+TGG | + | chr7.4:21120588-21120607 | None:intergenic | 40.0% | |
| TCTTGGATGTATAGGTCAAC+TGG | - | chr7.4:21120349-21120368 | MS.gene41793:intron | 40.0% | |
| TGAATCTGCTGTTGCAACTT+TGG | - | chr7.4:21118682-21118701 | MS.gene41793:intron | 40.0% | |
| TGACCTCTTCCAAAGCTAAT+TGG | - | chr7.4:21119755-21119774 | MS.gene41793:intron | 40.0% | |
| TGTAAGCAATGCTATAGCTC+TGG | + | chr7.4:21119042-21119061 | None:intergenic | 40.0% | |
| TTGGCAAAATTCAGAACGGT+AGG | - | chr7.4:21118701-21118720 | MS.gene41793:intron | 40.0% | |
| TTGTATGTACCTCATCCTCT+TGG | + | chr7.4:21118361-21118380 | None:intergenic | 40.0% | |
| TTGTTGGGCCACTCATTATT+AGG | - | chr7.4:21121390-21121409 | MS.gene41793:intron | 40.0% | |
| ! | AAAAGGGAGCCTATTGATTG+TGG | - | chr7.4:21119973-21119992 | MS.gene41793:intron | 40.0% |
| ! | ACTTTGAGGACATTGATTGG+AGG | - | chr7.4:21121699-21121718 | MS.gene41793:intron | 40.0% |
| ! | AGGGTGCTTAGATATAGTGA+TGG | - | chr7.4:21121950-21121969 | MS.gene41793:intron | 40.0% |
| ! | ATTGGTAAATTTTCCAGGGG+CGG | + | chr7.4:21119633-21119652 | None:intergenic | 40.0% |
| ! | CACCCTTTTATTAGAGGCAA+AGG | + | chr7.4:21121936-21121955 | None:intergenic | 40.0% |
| ! | CACGCATATCTCAAGCTTTT+AGG | - | chr7.4:21121233-21121252 | MS.gene41793:intron | 40.0% |
| ! | CTGTATCTTTTGTAGAGGCT+CGG | - | chr7.4:21122160-21122179 | MS.gene41793:CDS | 40.0% |
| ! | TGCACTTTGAGGACATTGAT+TGG | - | chr7.4:21121696-21121715 | MS.gene41793:intron | 40.0% |
| ! | TGCTTAGCTCTTCTTTGAAC+CGG | - | chr7.4:21121542-21121561 | MS.gene41793:intron | 40.0% |
| ! | TTCTAGTATGAACCCGGTTT+TGG | + | chr7.4:21121603-21121622 | None:intergenic | 40.0% |
| !! | AAAAGCTAGCTTTAGGGTGA+AGG | + | chr7.4:21121309-21121328 | None:intergenic | 40.0% |
| !! | AACCCCAAAAGCTAGCTTTA+GGG | + | chr7.4:21121315-21121334 | None:intergenic | 40.0% |
| !! | CTTCCAATTAGCTTTGGAAG+AGG | + | chr7.4:21119761-21119780 | None:intergenic | 40.0% |
| !! | TTAGCTTTGGAAGAGGTCAT+TGG | + | chr7.4:21119754-21119773 | None:intergenic | 40.0% |
| !!! | TCACCCTAAAGCTAGCTTTT+GGG | - | chr7.4:21121309-21121328 | MS.gene41793:intron | 40.0% |
| !!! | TTCACCCTAAAGCTAGCTTT+TGG | - | chr7.4:21121308-21121327 | MS.gene41793:intron | 40.0% |
| AAATCGGAACCAAGAGGATG+AGG | - | chr7.4:21118349-21118368 | MS.gene41793:intron | 45.0% | |
| ACGTTTCGCATGTCATATCC+TGG | - | chr7.4:21121444-21121463 | MS.gene41793:CDS | 45.0% | |
| AGGTAGCTGAGAGGAAACTT+TGG | + | chr7.4:21119606-21119625 | None:intergenic | 45.0% | |
| AGTGGAATGAAGGTTGTGGT+AGG | + | chr7.4:21121840-21121859 | None:intergenic | 45.0% | |
| ATAGATCAACCAAGCCTGAC+CGG | + | chr7.4:21121564-21121583 | None:intergenic | 45.0% | |
| ATGCTTACATATAGGGACGG+AGG | + | chr7.4:21121913-21121932 | None:intergenic | 45.0% | |
| ATGGGAAAATCGGAACCAAG+AGG | - | chr7.4:21118343-21118362 | MS.gene41793:intron | 45.0% | |
| CAAACAGAACTGATGGAGGA+TGG | + | chr7.4:21119559-21119578 | None:intergenic | 45.0% | |
| CGAGCCTCTACAAAAGATAC+AGG | + | chr7.4:21122162-21122181 | None:intergenic | 45.0% | |
| CGTTTCGCATGTCATATCCT+GGG | - | chr7.4:21121445-21121464 | MS.gene41793:CDS | 45.0% | |
| GATTGTGGTAAGGACTACAC+AGG | - | chr7.4:21119988-21120007 | MS.gene41793:intron | 45.0% | |
| GCATCTCTTTCTCGTTGCAA+AGG | + | chr7.4:21118307-21118326 | None:intergenic | 45.0% | |
| TCGTAGAGAATACAGCGGAA+AGG | + | chr7.4:21119529-21119548 | None:intergenic | 45.0% | |
| TGCTTACATATAGGGACGGA+GGG | + | chr7.4:21121912-21121931 | None:intergenic | 45.0% | |
| TGGACATAGAGGTTGAGCTT+CGG | + | chr7.4:21120095-21120114 | None:intergenic | 45.0% | |
| TTTGGAAGCAGCGAAAACGA+CGG | + | chr7.4:21119588-21119607 | None:intergenic | 45.0% | |
| ! | AACAACGGTGGTGGTTTCAT+TGG | + | chr7.4:21119651-21119670 | None:intergenic | 45.0% |
| ! | AGGACATTGATTGGAGGACA+CGG | - | chr7.4:21121705-21121724 | MS.gene41793:intron | 45.0% |
| ! | GGAGCCTATTGATTGTGGTA+AGG | - | chr7.4:21119978-21119997 | MS.gene41793:intron | 45.0% |
| !! | CAACCCCAAAAGCTAGCTTT+AGG | + | chr7.4:21121316-21121335 | None:intergenic | 45.0% |
| !!! | CACCCTAAAGCTAGCTTTTG+GGG | - | chr7.4:21121310-21121329 | MS.gene41793:intron | 45.0% |
| !!! | CTAGCTTTTGGGGTTGAGTT+GGG | - | chr7.4:21121320-21121339 | MS.gene41793:intron | 45.0% |
| !!! | TGTTTTGGAAGTCCAGTCGA+AGG | + | chr7.4:21121154-21121173 | None:intergenic | 45.0% |
| AGCAGTTGCAGCAGCTAAGA+AGG | - | chr7.4:21118595-21118614 | MS.gene41793:intron | 50.0% | |
| AGCCAACTTAGTCCTTCGAC+TGG | - | chr7.4:21121139-21121158 | MS.gene41793:intron | 50.0% | |
| AGCTCTTCTTTGAACCGGTC+AGG | - | chr7.4:21121547-21121566 | MS.gene41793:intron | 50.0% | |
| AGGCAGTTTGACAGCTGTCA+TGG | - | chr7.4:21119933-21119952 | MS.gene41793:intron | 50.0% | |
| AGTCGGTGTGATGTGCATGA+CGG | + | chr7.4:21118247-21118266 | None:intergenic | 50.0% | |
| CTCTGATATCGACGACGAAG+AGG | - | chr7.4:21117973-21117992 | MS.gene41793:intron | 50.0% | |
| GCATGTCATATCCTGGGCAT+CGG | - | chr7.4:21121451-21121470 | MS.gene41793:CDS | 50.0% | |
| GGCAGTTTGACAGCTGTCAT+GGG | - | chr7.4:21119934-21119953 | MS.gene41793:intron | 50.0% | |
| GTCCAGTCGAAGGACTAAGT+TGG | + | chr7.4:21121144-21121163 | None:intergenic | 50.0% | |
| GTCTATTGTTGCTCCCACAC+AGG | - | chr7.4:21120571-21120590 | MS.gene41793:intron | 50.0% | |
| TAGTGGAATAGTGACAGGCC+AGG | + | chr7.4:21119422-21119441 | None:intergenic | 50.0% | |
| TGGTAGTATCCTCTGTGACC+TGG | - | chr7.4:21119401-21119420 | MS.gene41793:intron | 50.0% | |
| TTCTTTGAACCGGTCAGGCT+TGG | - | chr7.4:21121552-21121571 | MS.gene41793:intron | 50.0% | |
| !!! | GCTAGCTTTTGGGGTTGAGT+TGG | - | chr7.4:21121319-21121338 | MS.gene41793:intron | 50.0% |
| AGGTCATTGGAGTTGCAGCG+TGG | + | chr7.4:21119741-21119760 | None:intergenic | 55.0% | |
| CGGACTGCAATGGTTGTCGA+AGG | - | chr7.4:21121725-21121744 | MS.gene41793:intron | 55.0% | |
| ! | AATTTTCCAGGGGCGGCACA+AGG | + | chr7.4:21119626-21119645 | None:intergenic | 55.0% |
| ! | TTGGAGGACACGGACTGCAA+TGG | - | chr7.4:21121715-21121734 | MS.gene41793:intron | 55.0% |
| !! | TGTCATATCCTGGGCATCGG+AGG | - | chr7.4:21121454-21121473 | MS.gene41793:CDS | 55.0% |
| AGTGACAGGCCAGGTCACAG+AGG | + | chr7.4:21119413-21119432 | None:intergenic | 60.0% | |
| GAAGCAGAGACGAGCGCAAC+AGG | - | chr7.4:21120488-21120507 | MS.gene41793:intron | 60.0% | |
| TCCAACAACCTCCGATGCCC+AGG | + | chr7.4:21121465-21121484 | None:intergenic | 60.0% | |
| !! | TCCTGGGCATCGGAGGTTGT+TGG | - | chr7.4:21121461-21121480 | MS.gene41793:CDS | 60.0% |
| GGCGGCACAAGGTAGCTGAG+AGG | + | chr7.4:21119615-21119634 | None:intergenic | 65.0% | |
| CAGCTACCTTGTGCCGCCCC+TGG | - | chr7.4:21119617-21119636 | MS.gene41793:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 21117830 | 21122303 | 21117830 | ID=MS.gene41793 |
| chr7.4 | mRNA | 21117830 | 21122303 | 21117830 | ID=MS.gene41793.t1;Parent=MS.gene41793 |
| chr7.4 | exon | 21122139 | 21122303 | 21122139 | ID=MS.gene41793.t1.exon1;Parent=MS.gene41793.t1 |
| chr7.4 | CDS | 21122139 | 21122303 | 21122139 | ID=cds.MS.gene41793.t1;Parent=MS.gene41793.t1 |
| chr7.4 | exon | 21121763 | 21121840 | 21121763 | ID=MS.gene41793.t1.exon2;Parent=MS.gene41793.t1 |
| chr7.4 | CDS | 21121763 | 21121840 | 21121763 | ID=cds.MS.gene41793.t1;Parent=MS.gene41793.t1 |
| chr7.4 | exon | 21121415 | 21121555 | 21121415 | ID=MS.gene41793.t1.exon3;Parent=MS.gene41793.t1 |
| chr7.4 | CDS | 21121415 | 21121555 | 21121415 | ID=cds.MS.gene41793.t1;Parent=MS.gene41793.t1 |
| chr7.4 | exon | 21117830 | 21117958 | 21117830 | ID=MS.gene41793.t1.exon4;Parent=MS.gene41793.t1 |
| chr7.4 | CDS | 21117830 | 21117958 | 21117830 | ID=cds.MS.gene41793.t1;Parent=MS.gene41793.t1 |
| Gene Sequence |
| Protein sequence |
