Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41861.t1 | XP_003624824.2 | 94.7 | 113 | 6 | 0 | 6 | 118 | 117 | 229 | 6.60E-56 | 226.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41861.t1 | A2Q1Y8 | 94.7 | 113 | 6 | 0 | 6 | 118 | 117 | 229 | 4.7e-56 | 226.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04991 | MS.gene41861 | 0.804225 | 2.39E-49 | -1.69E-46 |
| MS.gene060851 | MS.gene41861 | -0.809531 | 1.81E-50 | -1.69E-46 |
| MS.gene060852 | MS.gene41861 | -0.80868 | 2.75E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41861.t1 | MTR_7g088040 | 94.690 | 113 | 6 | 0 | 6 | 118 | 117 | 229 | 2.26e-77 | 228 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41861.t1 | AT3G56820 | 67.857 | 112 | 34 | 2 | 7 | 118 | 111 | 220 | 2.75e-51 | 161 |
| MS.gene41861.t1 | AT3G56820 | 68.807 | 109 | 32 | 2 | 10 | 118 | 98 | 204 | 1.09e-50 | 159 |
| MS.gene41861.t1 | AT3G56820 | 73.333 | 45 | 12 | 0 | 7 | 51 | 111 | 155 | 3.58e-20 | 80.5 |
Find 24 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGTGCTGCTATCAAGTTTA+GGG | 0.274684 | 7.3:-21288974 | MS.gene41861:intron |
| GTTCGGAGTGCTTACTTTAT+AGG | 0.282848 | 7.3:-21287496 | MS.gene41861:CDS |
| GGGGTGCTGCTATCAAGTTT+AGG | 0.298006 | 7.3:-21288975 | MS.gene41861:CDS |
| CAAGTACGGACTTTAATGTT+TGG | 0.354005 | 7.3:-21287441 | MS.gene41861:CDS |
| CTCTTCATCTCGGTGAAATT+CGG | 0.355507 | 7.3:-21289056 | MS.gene41861:CDS |
| AACAGCGAGGTAACTGATAT+TGG | 0.393984 | 7.3:-21287607 | MS.gene41861:CDS |
| TATAGTTTATGATACTATCT+TGG | 0.398381 | 7.3:+21287470 | None:intergenic |
| CATCTCGGTGAAATTCGGCC+TGG | 0.431710 | 7.3:-21289051 | MS.gene41861:CDS |
| ATCTCGGTGAAATTCGGCCT+GGG | 0.434068 | 7.3:-21289050 | MS.gene41861:CDS |
| ACTTGTGCTTCTCTTCATCT+CGG | 0.490984 | 7.3:-21289066 | MS.gene41861:CDS |
| AAAGCATGTGCAGTATGAGC+AGG | 0.498771 | 7.3:+21287535 | None:intergenic |
| TAGTGAACATAGATCCGGTT+CGG | 0.501356 | 7.3:-21287513 | MS.gene41861:CDS |
| ATAAAGTAAGCACTCCGAAC+CGG | 0.512043 | 7.3:+21287499 | None:intergenic |
| TGCTTTAGTGAACATAGATC+CGG | 0.514575 | 7.3:-21287518 | MS.gene41861:CDS |
| TGATTTCCTCTCAACTTCCC+AGG | 0.521431 | 7.3:+21289033 | None:intergenic |
| AACATTAAAGTCCGTACTTG+AGG | 0.548423 | 7.3:+21287444 | None:intergenic |
| AAACTATAATGCCTCAAGTA+CGG | 0.551251 | 7.3:-21287455 | MS.gene41861:CDS |
| GGCTATGCTGAGGTGACCAT+TGG | 0.556044 | 7.3:-21287586 | MS.gene41861:CDS |
| AACAACCTCATCTCTGCCAA+TGG | 0.586486 | 7.3:+21287570 | None:intergenic |
| ATTCGGCCTGGGAAGTTGAG+AGG | 0.620512 | 7.3:-21289039 | MS.gene41861:CDS |
| AAGCATGTGCAGTATGAGCA+GGG | 0.642060 | 7.3:+21287536 | None:intergenic |
| AACTGATATTGGCTATGCTG+AGG | 0.679963 | 7.3:-21287596 | MS.gene41861:CDS |
| GGTGACCATTGGCAGAGATG+AGG | 0.708921 | 7.3:-21287575 | MS.gene41861:CDS |
| TTTGCAGGTGGAAAACAGCG+AGG | 0.739005 | 7.3:-21287620 | MS.gene41861:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAAAAAAACATACTA+TGG | + | chr7.3:21287564-21287583 | None:intergenic | 10.0% |
| !!! | GTTTCTTTTTTTTTTTTTTT+TGG | + | chr7.3:21287804-21287823 | None:intergenic | 10.0% |
| !!! | AAATATCAACTTAAGTTTTT+TGG | - | chr7.3:21289480-21289499 | MS.gene41861:intron | 15.0% |
| !!! | TCATGATAATTTTGTTTAAT+AGG | + | chr7.3:21287758-21287777 | None:intergenic | 15.0% |
| !! | AAAAAGATTCTTCATTTCAT+TGG | + | chr7.3:21289658-21289677 | None:intergenic | 20.0% |
| !! | AAAAGATTCTTCATTTCATT+GGG | + | chr7.3:21289657-21289676 | None:intergenic | 20.0% |
| !! | AACTATCAATTATACATCAA+TGG | + | chr7.3:21288559-21288578 | None:intergenic | 20.0% |
| !! | AGATAAAATGCTAGTTATAT+TGG | - | chr7.3:21288462-21288481 | MS.gene41861:intron | 20.0% |
| !! | TATAGTTTATGATACTATCT+TGG | + | chr7.3:21289882-21289901 | None:intergenic | 20.0% |
| !!! | CTATTATTTTCGTAAATGAA+AGG | + | chr7.3:21287616-21287635 | None:intergenic | 20.0% |
| !!! | TATTTTGCAAACCAATTTTA+TGG | - | chr7.3:21289078-21289097 | MS.gene41861:CDS | 20.0% |
| !!! | TTCTTCGTGATTTTAAAATT+GGG | + | chr7.3:21287728-21287747 | None:intergenic | 20.0% |
| !!! | TTTCTTCGTGATTTTAAAAT+TGG | + | chr7.3:21287729-21287748 | None:intergenic | 20.0% |
| !!! | TTTTTTAAGAAAACACACTA+TGG | + | chr7.3:21287535-21287554 | None:intergenic | 20.0% |
| ! | AAGAGTAAAGAATACACTAT+TGG | - | chr7.3:21287840-21287859 | MS.gene41861:intron | 25.0% |
| ! | AAGCAAACACTAAAAATGTT+TGG | - | chr7.3:21289051-21289070 | MS.gene41861:CDS | 25.0% |
| ! | ACAACCTAACATAATAGTTA+AGG | + | chr7.3:21288724-21288743 | None:intergenic | 25.0% |
| ! | ACCAAATTAATTTAAGAGAG+AGG | + | chr7.3:21288414-21288433 | None:intergenic | 25.0% |
| ! | AGTAATAACTATAGTATACC+TGG | + | chr7.3:21288814-21288833 | None:intergenic | 25.0% |
| ! | ATATTTAGTATGTACATGTG+TGG | + | chr7.3:21289466-21289485 | None:intergenic | 25.0% |
| ! | ATTAATTTAAGAGAGAGGAA+AGG | + | chr7.3:21288409-21288428 | None:intergenic | 25.0% |
| ! | CAAATATAAGTTTGCAAACT+AGG | + | chr7.3:21289276-21289295 | None:intergenic | 25.0% |
| ! | TAGCATCACTTTATATCATT+GGG | + | chr7.3:21288889-21288908 | None:intergenic | 25.0% |
| ! | TAGTCCTTAACTATTATGTT+AGG | - | chr7.3:21288717-21288736 | MS.gene41861:intron | 25.0% |
| ! | TCCTCTCTCTTAAATTAATT+TGG | - | chr7.3:21288410-21288429 | MS.gene41861:intron | 25.0% |
| ! | TGAATGTTCGAATTAACATT+TGG | - | chr7.3:21288492-21288511 | MS.gene41861:intron | 25.0% |
| ! | TTAGCATCACTTTATATCAT+TGG | + | chr7.3:21288890-21288909 | None:intergenic | 25.0% |
| ! | TTTCAAAACCATGTTTGAAT+TGG | + | chr7.3:21288443-21288462 | None:intergenic | 25.0% |
| !! | TAATGAGACTTTTGTTCTTT+GGG | - | chr7.3:21288354-21288373 | MS.gene41861:intron | 25.0% |
| !! | TTTCATTGGGATTGTAATTT+TGG | + | chr7.3:21289644-21289663 | None:intergenic | 25.0% |
| !!! | GTTATTACTGAAAAAGTGTT+TGG | - | chr7.3:21288825-21288844 | MS.gene41861:intron | 25.0% |
| !!! | TGAAGAATCTTTTTTGTTGT+TGG | - | chr7.3:21289664-21289683 | MS.gene41861:intron | 25.0% |
| AAAAAAATGAAGATCGAGAG+AGG | + | chr7.3:21287481-21287500 | None:intergenic | 30.0% | |
| AAACTATAATGCCTCAAGTA+CGG | - | chr7.3:21289894-21289913 | MS.gene41861:intron | 30.0% | |
| AAGATGAAAATTACGCTCTA+CGG | - | chr7.3:21289002-21289021 | MS.gene41861:CDS | 30.0% | |
| ACATATCACATTTGATCCAA+TGG | + | chr7.3:21289175-21289194 | None:intergenic | 30.0% | |
| ATTGTGTTTGATGTTATACC+AGG | - | chr7.3:21288793-21288812 | MS.gene41861:intron | 30.0% | |
| CATTAATAGATCCTAGTTAC+AGG | + | chr7.3:21288959-21288978 | None:intergenic | 30.0% | |
| TACACTCCAAATTGAATAAG+AGG | + | chr7.3:21288520-21288539 | None:intergenic | 30.0% | |
| TGCTGTGTTAAAATAAGCTA+CGG | - | chr7.3:21289419-21289438 | MS.gene41861:intron | 30.0% | |
| TTAAAATGGAAACAAAGGGA+AGG | + | chr7.3:21289323-21289342 | None:intergenic | 30.0% | |
| TTGCTATGCAAAATGAAGTT+GGG | + | chr7.3:21289300-21289319 | None:intergenic | 30.0% | |
| TTGGTTCCTCTTATTCAATT+TGG | - | chr7.3:21288511-21288530 | MS.gene41861:intron | 30.0% | |
| ! | AATGAGACTTTTGTTCTTTG+GGG | - | chr7.3:21288355-21288374 | MS.gene41861:intron | 30.0% |
| ! | CGGTTTAAAATGGAAACAAA+GGG | + | chr7.3:21289327-21289346 | None:intergenic | 30.0% |
| ! | GTAATGAGACTTTTGTTCTT+TGG | - | chr7.3:21288353-21288372 | MS.gene41861:intron | 30.0% |
| ! | TCGGTTTAAAATGGAAACAA+AGG | + | chr7.3:21289328-21289347 | None:intergenic | 30.0% |
| !! | CTCAAAATGATTAGCTTATG+CGG | - | chr7.3:21289579-21289598 | MS.gene41861:intron | 30.0% |
| !!! | GATTTTAACTTGTTGACTTG+TGG | - | chr7.3:21288745-21288764 | MS.gene41861:intron | 30.0% |
| !!! | TTGTTCAGTTGTTTGGTTTT+CGG | + | chr7.3:21289389-21289408 | None:intergenic | 30.0% |
| AACATTAAAGTCCGTACTTG+AGG | + | chr7.3:21289908-21289927 | None:intergenic | 35.0% | |
| AATGCTTATTGATCCAATGG+TGG | + | chr7.3:21289151-21289170 | None:intergenic | 35.0% | |
| ATTGAAAGAACCCTTCGTTA+AGG | + | chr7.3:21288679-21288698 | None:intergenic | 35.0% | |
| CAAGTACGGACTTTAATGTT+TGG | - | chr7.3:21289908-21289927 | MS.gene41861:intron | 35.0% | |
| CCTTCAAACTCGGTTTAAAA+TGG | + | chr7.3:21289337-21289356 | None:intergenic | 35.0% | |
| CTAACTCTTGTTCAGTTGTT+TGG | + | chr7.3:21289396-21289415 | None:intergenic | 35.0% | |
| CTCATGACATCATTCTTAGA+AGG | - | chr7.3:21288910-21288929 | MS.gene41861:intron | 35.0% | |
| CTGTGTTAAAATAAGCTACG+GGG | - | chr7.3:21289421-21289440 | MS.gene41861:intron | 35.0% | |
| GATCAACCATGTTGACATAT+CGG | - | chr7.3:21288609-21288628 | MS.gene41861:intron | 35.0% | |
| GCTGTGTTAAAATAAGCTAC+GGG | - | chr7.3:21289420-21289439 | MS.gene41861:intron | 35.0% | |
| GTAGAAAACAAACTTGTGCA+TGG | - | chr7.3:21289215-21289234 | MS.gene41861:intron | 35.0% | |
| GTTCATTGCCAATTCAAACA+TGG | - | chr7.3:21288432-21288451 | MS.gene41861:intron | 35.0% | |
| GTTGCTATGCAAAATGAAGT+TGG | + | chr7.3:21289301-21289320 | None:intergenic | 35.0% | |
| GTTGTGACTTATTGACCTAA+CGG | - | chr7.3:21289193-21289212 | MS.gene41861:intron | 35.0% | |
| TAACCATCGAGACATGTAAA+TGG | - | chr7.3:21287684-21287703 | MS.gene41861:intron | 35.0% | |
| TAGTATGTACATGTGTGGTT+GGG | + | chr7.3:21289461-21289480 | None:intergenic | 35.0% | |
| TCACTTGTGCACCATAAAAT+TGG | + | chr7.3:21289092-21289111 | None:intergenic | 35.0% | |
| TGCTTTAGTGAACATAGATC+CGG | - | chr7.3:21289831-21289850 | MS.gene41861:intron | 35.0% | |
| TTAGTATGTACATGTGTGGT+TGG | + | chr7.3:21289462-21289481 | None:intergenic | 35.0% | |
| TTTAGTGTTTGCTTGATCGT+AGG | + | chr7.3:21289045-21289064 | None:intergenic | 35.0% | |
| ! | AACTTGTTTGTTTCCACCAT+TGG | - | chr7.3:21289135-21289154 | MS.gene41861:intron | 35.0% |
| ! | AGGATGATGGTATGTTGATT+TGG | + | chr7.3:21287967-21287986 | None:intergenic | 35.0% |
| ! | CATCAATGGTTGATATCATG+CGG | + | chr7.3:21288545-21288564 | None:intergenic | 35.0% |
| ! | CCATTTTAAACCGAGTTTGA+AGG | - | chr7.3:21289334-21289353 | MS.gene41861:intron | 35.0% |
| !! | CAAGTTTGTTTTCTACCGTT+AGG | + | chr7.3:21289211-21289230 | None:intergenic | 35.0% |
| !! | GATGGTATGTTGATTTGGAT+TGG | + | chr7.3:21287962-21287981 | None:intergenic | 35.0% |
| AACAGCGAGGTAACTGATAT+TGG | - | chr7.3:21289742-21289761 | MS.gene41861:intron | 40.0% | |
| AACGCAATGTCATCAACAAC+CGG | - | chr7.3:21287920-21287939 | MS.gene41861:intron | 40.0% | |
| AATCCAACCACGATTATCCT+TGG | + | chr7.3:21288212-21288231 | None:intergenic | 40.0% | |
| ACTTGTGCTTCTCTTCATCT+CGG | - | chr7.3:21288283-21288302 | MS.gene41861:intron | 40.0% | |
| AGAACCCTTCGTTAAGGATT+TGG | + | chr7.3:21288673-21288692 | None:intergenic | 40.0% | |
| AGTTACAGGTAGCAGTTTAG+TGG | + | chr7.3:21288945-21288964 | None:intergenic | 40.0% | |
| ATAAAGTAAGCACTCCGAAC+CGG | + | chr7.3:21289853-21289872 | None:intergenic | 40.0% | |
| ATGAGCCAAATCCTTAACGA+AGG | - | chr7.3:21288665-21288684 | MS.gene41861:intron | 40.0% | |
| ATGTCAACATGGTTGATCGT+CGG | + | chr7.3:21288607-21288626 | None:intergenic | 40.0% | |
| ATTGGGATGTGTAAACTCGA+CGG | + | chr7.3:21287711-21287730 | None:intergenic | 40.0% | |
| CAATGACCGATATGTCAACA+TGG | + | chr7.3:21288618-21288637 | None:intergenic | 40.0% | |
| CACATCATTGCCTTCAAACT+CGG | + | chr7.3:21289347-21289366 | None:intergenic | 40.0% | |
| CTAAACTGCTACCTGTAACT+AGG | - | chr7.3:21288945-21288964 | MS.gene41861:intron | 40.0% | |
| CTCTTCATCTCGGTGAAATT+CGG | - | chr7.3:21288293-21288312 | MS.gene41861:intron | 40.0% | |
| GAAACAAACAAGTTCGTGCA+TGG | + | chr7.3:21289129-21289148 | None:intergenic | 40.0% | |
| GATGAGAAGAGCGATATGAA+CGG | + | chr7.3:21288111-21288130 | None:intergenic | 40.0% | |
| GGCAATGCTTATTGATCCAA+TGG | + | chr7.3:21289154-21289173 | None:intergenic | 40.0% | |
| GTTCACAGTAATCTGTTTGC+AGG | - | chr7.3:21289714-21289733 | MS.gene41861:intron | 40.0% | |
| TAAGGAGTTAAACATCCAGC+AGG | + | chr7.3:21288852-21288871 | None:intergenic | 40.0% | |
| TAGTGAACATAGATCCGGTT+CGG | - | chr7.3:21289836-21289855 | MS.gene41861:intron | 40.0% | |
| TGAGCCAAATCCTTAACGAA+GGG | - | chr7.3:21288666-21288685 | MS.gene41861:intron | 40.0% | |
| TTATCCTTGGCAATAGGAGA+AGG | + | chr7.3:21288199-21288218 | None:intergenic | 40.0% | |
| ! | AACTGATATTGGCTATGCTG+AGG | - | chr7.3:21289753-21289772 | MS.gene41861:intron | 40.0% |
| ! | GAGCGTAATTTTCATCTTGC+TGG | + | chr7.3:21289000-21289019 | None:intergenic | 40.0% |
| ! | GGATCAATAAGCATTGCCAT+TGG | - | chr7.3:21289156-21289175 | MS.gene41861:intron | 40.0% |
| ! | GTTCGGAGTGCTTACTTTAT+AGG | - | chr7.3:21289853-21289872 | MS.gene41861:intron | 40.0% |
| !! | TAGCTCTAATGTCGTCGTTT+GGG | + | chr7.3:21288150-21288169 | None:intergenic | 40.0% |
| !! | TTAGCTCTAATGTCGTCGTT+TGG | + | chr7.3:21288151-21288170 | None:intergenic | 40.0% |
| !! | TTGATTTGGATTGGTCTTCG+CGG | + | chr7.3:21287953-21287972 | None:intergenic | 40.0% |
| !!! | TCAGTTGTTTGGTTTTCGGT+TGG | + | chr7.3:21289385-21289404 | None:intergenic | 40.0% |
| AAAGCATGTGCAGTATGAGC+AGG | + | chr7.3:21289817-21289836 | None:intergenic | 45.0% | |
| AACAACCTCATCTCTGCCAA+TGG | + | chr7.3:21289782-21289801 | None:intergenic | 45.0% | |
| AAGCATGTGCAGTATGAGCA+GGG | + | chr7.3:21289816-21289835 | None:intergenic | 45.0% | |
| ATAAGCTACGGGGTTCTCAA+CGG | - | chr7.3:21289431-21289450 | MS.gene41861:intron | 45.0% | |
| CACAGTAATCTGTTTGCAGG+TGG | - | chr7.3:21289717-21289736 | MS.gene41861:intron | 45.0% | |
| CCACGATTATCCTTGGCAAT+AGG | + | chr7.3:21288205-21288224 | None:intergenic | 45.0% | |
| CCTATTGCCAAGGATAATCG+TGG | - | chr7.3:21288202-21288221 | MS.gene41861:intron | 45.0% | |
| CGAGTTTGAAGGCAATGATG+TGG | - | chr7.3:21289345-21289364 | MS.gene41861:intron | 45.0% | |
| CTTTCCTTCTCCTATTGCCA+AGG | - | chr7.3:21288192-21288211 | MS.gene41861:intron | 45.0% | |
| CTTTCTTCCAGCATTTCAGG+TGG | - | chr7.3:21288253-21288272 | MS.gene41861:intron | 45.0% | |
| GCACTTTCTTCCAGCATTTC+AGG | - | chr7.3:21288250-21288269 | MS.gene41861:intron | 45.0% | |
| GCGGTCTGTAGGCAAAATTT+GGG | - | chr7.3:21289598-21289617 | MS.gene41861:intron | 45.0% | |
| GGACCATTTACATGTCTCGA+TGG | + | chr7.3:21287690-21287709 | None:intergenic | 45.0% | |
| TGATTTCCTCTCAACTTCCC+AGG | + | chr7.3:21288319-21288338 | None:intergenic | 45.0% | |
| TGCGGTCTGTAGGCAAAATT+TGG | - | chr7.3:21289597-21289616 | MS.gene41861:intron | 45.0% | |
| TGGCAATAGGAGAAGGAAAG+CGG | + | chr7.3:21288192-21288211 | None:intergenic | 45.0% | |
| TTGAAGGAATGAGGTGACGA+GGG | + | chr7.3:21288029-21288048 | None:intergenic | 45.0% | |
| TTGCCAAGGATAATCGTGGT+TGG | - | chr7.3:21288206-21288225 | MS.gene41861:intron | 45.0% | |
| TTTGAAGGAATGAGGTGACG+AGG | + | chr7.3:21288030-21288049 | None:intergenic | 45.0% | |
| ! | AGCTCTAATGTCGTCGTTTG+GGG | + | chr7.3:21288149-21288168 | None:intergenic | 45.0% |
| ! | ATGAAGATCGAGAGAGGTGT+TGG | + | chr7.3:21287475-21287494 | None:intergenic | 45.0% |
| ! | GAAGAAAGTGCGAGAGCAAT+AGG | + | chr7.3:21288241-21288260 | None:intergenic | 45.0% |
| ! | GTGAGGTCTTTGAAGGAATG+AGG | + | chr7.3:21288038-21288057 | None:intergenic | 45.0% |
| !! | GAAAAAGTGTTTGGTCCTGC+TGG | - | chr7.3:21288834-21288853 | MS.gene41861:intron | 45.0% |
| !! | GATTAGCTTATGCGGTCTGT+AGG | - | chr7.3:21289587-21289606 | MS.gene41861:intron | 45.0% |
| !! | GGGTGCTGCTATCAAGTTTA+GGG | - | chr7.3:21288375-21288394 | MS.gene41861:intron | 45.0% |
| !! | TGAAGATCGAGAGAGGTGTT+GGG | + | chr7.3:21287474-21287493 | None:intergenic | 45.0% |
| AACAGCTCCACCTGAAATGC+TGG | + | chr7.3:21288263-21288282 | None:intergenic | 50.0% | |
| AGGAAGATGGAGAGGACGAA+AGG | + | chr7.3:21288067-21288086 | None:intergenic | 50.0% | |
| ATCTCGGTGAAATTCGGCCT+GGG | - | chr7.3:21288299-21288318 | MS.gene41861:intron | 50.0% | |
| CCACTTCCGCCATGTTTCAA+CGG | - | chr7.3:21287993-21288012 | MS.gene41861:intron | 50.0% | |
| GGAAGATGGAGAGGACGAAA+GGG | + | chr7.3:21288066-21288085 | None:intergenic | 50.0% | |
| GGAGAGAGTGAGGTCTTTGA+AGG | + | chr7.3:21288045-21288064 | None:intergenic | 50.0% | |
| GGCAATAGGAGAAGGAAAGC+GGG | + | chr7.3:21288191-21288210 | None:intergenic | 50.0% | |
| TGACATTGCGTTGCTGCTAC+TGG | + | chr7.3:21287912-21287931 | None:intergenic | 50.0% | |
| TGGGTCATGCGCACAAGTTA+AGG | + | chr7.3:21288870-21288889 | None:intergenic | 50.0% | |
| TTTGCAGGTGGAAAACAGCG+AGG | - | chr7.3:21289729-21289748 | MS.gene41861:intron | 50.0% | |
| ! | TTGAAACATGGCGGAAGTGG+AGG | + | chr7.3:21287993-21288012 | None:intergenic | 50.0% |
| !! | ATCGAGAGAGGTGTTGGGAA+GGG | + | chr7.3:21287469-21287488 | None:intergenic | 50.0% |
| !! | GGGGTGCTGCTATCAAGTTT+AGG | - | chr7.3:21288374-21288393 | MS.gene41861:intron | 50.0% |
| AACGGAGAGAGATCCAAGCG+AGG | + | chr7.3:21288093-21288112 | None:intergenic | 55.0% | |
| AAGGAATGAGGTGACGAGGG+AGG | + | chr7.3:21288026-21288045 | None:intergenic | 55.0% | |
| AGGAATGAGGTGACGAGGGA+GGG | + | chr7.3:21288025-21288044 | None:intergenic | 55.0% | |
| AGGACGAAAGGGAGAGAGTG+AGG | + | chr7.3:21288055-21288074 | None:intergenic | 55.0% | |
| ATTCGGCCTGGGAAGTTGAG+AGG | - | chr7.3:21288310-21288329 | MS.gene41861:intron | 55.0% | |
| CATCTCGGTGAAATTCGGCC+TGG | - | chr7.3:21288298-21288317 | MS.gene41861:intron | 55.0% | |
| CATTGCGTTGCTGCTACTGG+TGG | + | chr7.3:21287909-21287928 | None:intergenic | 55.0% | |
| CCAAGCGAGGAAGAGGAAGA+TGG | + | chr7.3:21288080-21288099 | None:intergenic | 55.0% | |
| CCATCTTCCTCTTCCTCGCT+TGG | - | chr7.3:21288077-21288096 | MS.gene41861:intron | 55.0% | |
| CGAGGAAGAGGAAGATGGAG+AGG | + | chr7.3:21288075-21288094 | None:intergenic | 55.0% | |
| CGTCGTTTGGGGAAGAGAGA+GGG | + | chr7.3:21288138-21288157 | None:intergenic | 55.0% | |
| GAAGTGGAGGAGGAGGATGA+TGG | + | chr7.3:21287980-21287999 | None:intergenic | 55.0% | |
| GAGAGATCCAAGCGAGGAAG+AGG | + | chr7.3:21288087-21288106 | None:intergenic | 55.0% | |
| GCGGATCCGTTGAAACATGG+CGG | + | chr7.3:21288002-21288021 | None:intergenic | 55.0% | |
| GGCTATGCTGAGGTGACCAT+TGG | - | chr7.3:21289763-21289782 | MS.gene41861:intron | 55.0% | |
| GGTGACCATTGGCAGAGATG+AGG | - | chr7.3:21289774-21289793 | MS.gene41861:intron | 55.0% | |
| TCGTCGTTTGGGGAAGAGAG+AGG | + | chr7.3:21288139-21288158 | None:intergenic | 55.0% | |
| TTTGGGGAAGAGAGAGGGAG+TGG | + | chr7.3:21288133-21288152 | None:intergenic | 55.0% | |
| ! | AAACATGGCGGAAGTGGAGG+AGG | + | chr7.3:21287990-21288009 | None:intergenic | 55.0% |
| ! | CCGTTGAAACATGGCGGAAG+TGG | + | chr7.3:21287996-21288015 | None:intergenic | 55.0% |
| !! | GATCGAGAGAGGTGTTGGGA+AGG | + | chr7.3:21287470-21287489 | None:intergenic | 55.0% |
| !! | GTGGTAGTGGTGGTTCTCTC+TGG | + | chr7.3:21287887-21287906 | None:intergenic | 55.0% |
| GGAATGAGGTGACGAGGGAG+GGG | + | chr7.3:21288024-21288043 | None:intergenic | 60.0% | |
| GGGGCGGATCCGTTGAAACA+TGG | + | chr7.3:21288005-21288024 | None:intergenic | 60.0% | |
| TGCGTTGCTGCTACTGGTGG+TGG | + | chr7.3:21287906-21287925 | None:intergenic | 60.0% | |
| !! | GCTACTGGTGGTGGTAGTGG+TGG | + | chr7.3:21287897-21287916 | None:intergenic | 60.0% |
| !! | GCTGCTACTGGTGGTGGTAG+TGG | + | chr7.3:21287900-21287919 | None:intergenic | 60.0% |
| ATGAGGTGACGAGGGAGGGG+CGG | + | chr7.3:21288021-21288040 | None:intergenic | 65.0% | |
| ! | CATGGCGGAAGTGGAGGAGG+AGG | + | chr7.3:21287987-21288006 | None:intergenic | 65.0% |
| !! | TGGTCTTCGCGGTGTTGCGC+CGG | + | chr7.3:21287942-21287961 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 21287429 | 21289942 | 21287429 | ID=MS.gene41861 |
| chr7.3 | mRNA | 21287429 | 21289942 | 21287429 | ID=MS.gene41861.t1;Parent=MS.gene41861 |
| chr7.3 | exon | 21289918 | 21289942 | 21289918 | ID=MS.gene41861.t1.exon1;Parent=MS.gene41861.t1 |
| chr7.3 | CDS | 21289918 | 21289942 | 21289918 | ID=cds.MS.gene41861.t1;Parent=MS.gene41861.t1 |
| chr7.3 | exon | 21288975 | 21289099 | 21288975 | ID=MS.gene41861.t1.exon2;Parent=MS.gene41861.t1 |
| chr7.3 | CDS | 21288975 | 21289099 | 21288975 | ID=cds.MS.gene41861.t1;Parent=MS.gene41861.t1 |
| chr7.3 | exon | 21287429 | 21287635 | 21287429 | ID=MS.gene41861.t1.exon3;Parent=MS.gene41861.t1 |
| chr7.3 | CDS | 21287429 | 21287635 | 21287429 | ID=cds.MS.gene41861.t1;Parent=MS.gene41861.t1 |
| Gene Sequence |
| Protein sequence |
