AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41955


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41955.t1 MTR_6g045467 92.457 464 19 2 1 464 1 448 0.0 827
MS.gene41955.t1 MTR_6g045467 92.457 464 19 2 1 464 1 448 0.0 827
MS.gene41955.t1 MTR_4g117360 86.141 469 61 1 1 465 1 469 0.0 791
MS.gene41955.t1 MTR_6g045467 91.706 422 19 2 1 422 1 406 0.0 771
MS.gene41955.t1 MTR_7g010900 68.870 469 134 3 1 465 1 461 0.0 639
MS.gene41955.t1 MTR_6g045467 92.541 362 11 2 103 464 1 346 0.0 637
MS.gene41955.t1 MTR_6g045467 92.011 363 13 2 102 464 3 349 0.0 636
MS.gene41955.t1 MTR_6g045467 92.011 363 13 2 102 464 3 349 0.0 635
MS.gene41955.t1 MTR_7g094620 63.877 454 146 6 22 463 26 473 0.0 521
MS.gene41955.t1 MTR_4g092610 55.340 412 164 5 37 434 18 423 1.72e-149 434
MS.gene41955.t1 MTR_2g010520 53.398 412 176 4 37 434 18 427 3.95e-139 407
MS.gene41955.t1 MTR_3g111830 46.667 450 207 6 27 453 9 448 5.52e-133 394
MS.gene41955.t1 MTR_2g010520 63.265 294 107 1 37 329 18 311 1.47e-131 384
MS.gene41955.t1 MTR_6g052300 45.392 434 200 8 27 441 15 430 2.31e-122 367
MS.gene41955.t1 MTR_6g051860 50.794 315 153 2 12 325 62 375 9.16e-109 330
MS.gene41955.t1 MTR_2g010520 63.223 242 88 1 37 277 18 259 5.80e-104 312
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41955.t1 AT4G14240 75.336 446 97 4 22 464 26 461 0.0 628
MS.gene41955.t1 AT4G14230 70.067 451 128 2 17 465 20 465 0.0 624
MS.gene41955.t1 AT4G14240 73.991 446 94 5 22 464 26 452 0.0 605
MS.gene41955.t1 AT1G03270 65.180 471 145 5 22 476 24 491 0.0 564
MS.gene41955.t1 AT4G14240 74.114 367 82 4 101 464 1 357 1.83e-173 493
MS.gene41955.t1 AT4G33700 53.207 421 176 5 28 434 9 422 3.40e-142 415
MS.gene41955.t1 AT5G52790 50.711 422 180 5 19 438 1 396 2.86e-140 410
MS.gene41955.t1 AT5G52790 50.588 425 182 5 19 441 1 399 5.84e-140 412
MS.gene41955.t1 AT2G14520 52.206 408 189 4 30 434 11 415 4.47e-138 404
MS.gene41955.t1 AT1G47330 48.458 454 206 5 24 450 5 457 1.65e-137 407
MS.gene41955.t1 AT2G14520 51.449 414 189 5 30 434 11 421 2.48e-136 400
MS.gene41955.t1 AT2G14520 51.449 414 189 5 30 434 11 421 2.48e-136 400
MS.gene41955.t1 AT5G52790 50.000 406 175 5 19 422 1 380 1.86e-130 384
MS.gene41955.t1 AT5G52790 50.000 406 175 5 19 422 1 380 1.86e-130 384
MS.gene41955.t1 AT5G52790 49.755 408 177 5 19 424 1 382 7.03e-130 385
MS.gene41955.t1 AT4G33700 61.538 273 104 1 28 299 9 281 5.02e-117 346
MS.gene41955.t1 AT1G47330 46.950 377 172 5 101 450 1 376 8.20e-109 331
MS.gene41955.t1 AT4G33700 50.578 346 150 5 103 434 1 339 1.81e-105 318
MS.gene41955.t1 AT2G14520 49.267 341 161 5 103 434 1 338 5.76e-102 309

Find 110 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAATCCCAGGAATATTAT+TGG 0.236548 6.4:+19061271 MS.gene41955:CDS
CCATATGACTACTTCCCTTT+TGG 0.252902 6.4:-19061605 None:intergenic
CTGACAGGGGTCTCTGATTC+AGG 0.253158 6.4:-19061427 None:intergenic
TCTATGTAATGCTGTTTCTA+TGG 0.263654 6.4:+19058781 MS.gene41955:CDS
AGGCCACATGCCACGATTCC+TGG 0.276195 6.4:+19063015 MS.gene41955:CDS
CCGGTCAACTTTCGGATTGA+TGG 0.299677 6.4:-19062216 None:intergenic
GTCAAGCCTTCAAAGCTTAC+TGG 0.302358 6.4:+19061786 MS.gene41955:CDS
AAAGCTCTTGTCTCCATTCA+TGG 0.311809 6.4:+19060135 MS.gene41955:CDS
GTGCTAGATTCCGCCCTTCC+AGG 0.315116 6.4:-19063033 None:intergenic
CAGGTTCTGGATTGCGTACT+GGG 0.343310 6.4:+19060078 MS.gene41955:intron
TCAGGTTCTGGATTGCGTAC+TGG 0.343532 6.4:+19060077 MS.gene41955:intron
TAAAAGCCCAATAATATTCC+TGG 0.351419 6.4:-19061278 None:intergenic
AACCGCTTACTGCTCCCTTT+TGG 0.354937 6.4:-19062239 None:intergenic
GAAATCCCAGGAATATTATT+GGG 0.356949 6.4:+19061272 MS.gene41955:CDS
AAAGAAAATGTTGATTCAAT+AGG 0.371631 6.4:-19060813 None:intergenic
TACTCCATTGCTACAAGAAC+TGG 0.375041 6.4:+19061731 MS.gene41955:CDS
TTAATGCCAGTAAGCTTTGA+AGG 0.381157 6.4:-19061792 None:intergenic
CTTGATTGAAGAGTTTATCT+AGG 0.383532 6.4:-19059664 None:intergenic
AGCCGAGTTCCTGTCTATTC+TGG 0.385497 6.4:+19061250 MS.gene41955:CDS
AAGAGTTTATCTAGGTATAG+AGG 0.389663 6.4:-19059656 None:intergenic
ATGTTACCCTCTTTCTTATC+CGG 0.389771 6.4:+19059937 MS.gene41955:CDS
GCCAACGAAAGCATACCTTT+TGG 0.390456 6.4:+19058165 MS.gene41955:CDS
ATCTCAAATCAGGGAGGCAT+TGG 0.390658 6.4:+19061204 MS.gene41955:intron
CTCTTTGCCGGAGTCATGTC+CGG 0.396365 6.4:+19058234 MS.gene41955:CDS
CAAGCAATTTGTAGTAGATA+TGG 0.402882 6.4:+19059863 MS.gene41955:CDS
AAGGACGGAATCACGGATAA+AGG 0.410119 6.4:+19062995 MS.gene41955:CDS
TTATGCAGCGATCATTCTTC+CGG 0.415941 6.4:+19058721 MS.gene41955:intron
CCGAAAGTTGACCGGCCAAA+AGG 0.426420 6.4:+19062224 MS.gene41955:CDS
AACAAGAAAACAGCATATTC+CGG 0.426683 6.4:-19058211 None:intergenic
TCGTTCAGTATATCGTATAA+AGG 0.429657 6.4:-19061579 None:intergenic
TTTAGATGTTAATTCAAAGT+TGG 0.434582 6.4:+19060833 MS.gene41955:CDS
AATATGTTGATGTTCATAAC+AGG 0.435184 6.4:+19062031 MS.gene41955:CDS
GGAACGACGAGGCTTTATTT+AGG 0.438067 6.4:+19060100 MS.gene41955:CDS
CACTACGTTCAAGAATTTCA+AGG 0.449665 6.4:-19058293 None:intergenic
CGAAAGTTGACCGGCCAAAA+GGG 0.460989 6.4:+19062225 MS.gene41955:CDS
TTATACCTCCATGCCATGAA+TGG 0.470063 6.4:-19060148 None:intergenic
CCAAAAGGGAAGTAGTCATA+TGG 0.470886 6.4:+19061605 MS.gene41955:CDS
GTAGAATTTACCTTTCCAAC+CGG 0.473889 6.4:-19059956 None:intergenic
TACCCTCTTTCTTATCCGGT+TGG 0.476027 6.4:+19059941 MS.gene41955:CDS
TATACTGAACGAGTTCCAAA+AGG 0.480137 6.4:+19061590 MS.gene41955:CDS
CGGATAGATACTGCACTGAC+AGG 0.486816 6.4:-19061442 None:intergenic
TTGGCGAGAGCATGATGGTC+AGG 0.488438 6.4:-19058147 None:intergenic
AATATTCACGGTGAAGTGAT+TGG 0.493535 6.4:+19061870 MS.gene41955:CDS
AGTGATTGGTATTATCACTT+TGG 0.495868 6.4:+19061884 MS.gene41955:CDS
TTCTCTTCATCAATTAGTTG+TGG 0.497519 6.4:-19061666 None:intergenic
CTGTCAGTGCAGTATCTATC+CGG 0.501210 6.4:+19061443 MS.gene41955:CDS
AGTTGCAGCTGCTTCCTCAA+TGG 0.501520 6.4:+19062185 MS.gene41955:CDS
GTTGTGAAGACTACGGGAAA+AGG 0.504332 6.4:+19061633 MS.gene41955:CDS
GTCATGTCCGGTCTCACACT+TGG 0.509099 6.4:+19058246 MS.gene41955:CDS
GAATCCAGTTCTTGTAGCAA+TGG 0.511663 6.4:-19061735 None:intergenic
ATGTTAATTCAAAGTTGGAC+TGG 0.514990 6.4:+19060838 MS.gene41955:CDS
AAACACACCGTGGTATTCTC+CGG 0.516611 6.4:-19061462 None:intergenic
TCTCAAATCAGGGAGGCATT+GGG 0.517004 6.4:+19061205 MS.gene41955:intron
CATGAGACCAAGTGTGAGAC+CGG 0.518128 6.4:-19058253 None:intergenic
CTCAAGAGGGTAAGCGGGAA+AGG 0.520366 6.4:+19062976 MS.gene41955:CDS
CTGGGATTTCCAGAATAGAC+AGG 0.522711 6.4:-19061259 None:intergenic
CAGGAACTCGGCTGTGCCCG+CGG 0.523586 6.4:-19061240 None:intergenic
AGCACTTGATTTGACCGAAA+AGG 0.528383 6.4:+19060332 MS.gene41955:CDS
GAAGTAAAGTAACAAGAAGC+TGG 0.529515 6.4:-19058760 None:intergenic
ACGCACAAGCCATGAAAAGT+TGG 0.534177 6.4:-19059900 None:intergenic
TCCAAAAGGTATGCTTTCGT+TGG 0.534308 6.4:-19058166 None:intergenic
AAAAGCCCAATAATATTCCT+GGG 0.537470 6.4:-19061277 None:intergenic
AGCGGGAAAGGACGGAATCA+CGG 0.544015 6.4:+19062988 MS.gene41955:CDS
AGGAACTCGGCTGTGCCCGC+GGG 0.545017 6.4:-19061239 None:intergenic
CCTTCTTACGAAAATATTCA+CGG 0.545232 6.4:+19061858 MS.gene41955:CDS
ACATGCCACGATTCCTGGAA+GGG 0.545699 6.4:+19063020 MS.gene41955:CDS
TGGGAAAGATTCTTGCCCGC+GGG 0.549753 6.4:+19061224 MS.gene41955:CDS
TAAGTCTCAAGAGGGTAAGC+GGG 0.551610 6.4:+19062971 MS.gene41955:CDS
CCATCAATCCGAAAGTTGAC+CGG 0.552352 6.4:+19062216 MS.gene41955:CDS
TCTTTCTTATCCGGTTGGAA+AGG 0.558257 6.4:+19059946 MS.gene41955:CDS
TCGTATAAAGGCATATCAGA+TGG 0.565213 6.4:-19061567 None:intergenic
TATCTACTACAAATTGCTTG+TGG 0.565273 6.4:-19059860 None:intergenic
ATCCATGTTGCAGATCCAAA+AGG 0.568878 6.4:-19058180 None:intergenic
TGATGGAGCTCGTGCCATTG+AGG 0.569237 6.4:-19062199 None:intergenic
CTTGAAATTCTTGAACGTAG+TGG 0.572868 6.4:+19058294 MS.gene41955:CDS
AGTAGATATGGTCTTGCTGT+AGG 0.575361 6.4:+19059875 MS.gene41955:CDS
CACATGCCACGATTCCTGGA+AGG 0.577469 6.4:+19063019 MS.gene41955:CDS
CTGTCTATTCTGGAAATCCC+AGG 0.579697 6.4:+19061260 MS.gene41955:CDS
TTTCCAACCGGATAAGAAAG+AGG 0.579776 6.4:-19059944 None:intergenic
GCTGCTGTTGTGAAGACTAC+GGG 0.582286 6.4:+19061627 MS.gene41955:CDS
ATGTAATGCTGTTTCTATGG+AGG 0.583032 6.4:+19058784 MS.gene41955:CDS
TTGCATGCAGGAAGAAATTG+TGG 0.584566 6.4:+19061996 MS.gene41955:intron
AGAGGGTAAGCGGGAAAGGA+CGG 0.587640 6.4:+19062980 MS.gene41955:CDS
GGATAGATACTGCACTGACA+GGG 0.588476 6.4:-19061441 None:intergenic
CTAAGTCTCAAGAGGGTAAG+CGG 0.591364 6.4:+19062970 MS.gene41955:CDS
CTTCCAGGAATCGTGGCATG+TGG 0.592987 6.4:-19063018 None:intergenic
GGCTGCTGTTGTGAAGACTA+CGG 0.594701 6.4:+19061626 MS.gene41955:CDS
TGCAGCGATCATTCTTCCGG+TGG 0.596464 6.4:+19058724 MS.gene41955:intron
ATACTGAACGAGTTCCAAAA+GGG 0.596540 6.4:+19061591 MS.gene41955:CDS
ACTAGTTTGCAGACTAGTGA+TGG 0.600874 6.4:+19061822 MS.gene41955:CDS
ACTAGTGATGGCACATTAAG+CGG 0.601228 6.4:+19061834 MS.gene41955:CDS
TCTTGTCTCCATTCATGGCA+TGG 0.603983 6.4:+19060140 MS.gene41955:CDS
TGTGAGACCGGACATGACTC+CGG 0.604884 6.4:-19058241 None:intergenic
TTGGGAAAGATTCTTGCCCG+CGG 0.604895 6.4:+19061223 MS.gene41955:CDS
TTTCGTTGGCGAGAGCATGA+TGG 0.622269 6.4:-19058152 None:intergenic
TTCCAACCGGATAAGAAAGA+GGG 0.628963 6.4:-19059943 None:intergenic
GGTGCTGACTAAGTCTCAAG+AGG 0.631021 6.4:+19062962 MS.gene41955:CDS
TTCCGCCCTTCCAGGAATCG+TGG 0.634116 6.4:-19063025 None:intergenic
TGCCACGATTCCTGGAAGGG+CGG 0.640280 6.4:+19063023 MS.gene41955:CDS
GATGAGACAACAATTATCAG+TGG 0.641472 6.4:+19060309 MS.gene41955:CDS
TGTCTCCATTCATGGCATGG+AGG 0.641880 6.4:+19060143 MS.gene41955:CDS
GGAAGAAATTGTGGATGAGA+CGG 0.647783 6.4:+19062005 MS.gene41955:intron
TTCCAGAATAGACAGGAACT+CGG 0.650536 6.4:-19061252 None:intergenic
AGGTTCTGGATTGCGTACTG+GGG 0.664585 6.4:+19060079 MS.gene41955:intron
GATAGATACTGCACTGACAG+GGG 0.670187 6.4:-19061440 None:intergenic
GCAACATGGATTGCTTACGC+CGG 0.670459 6.4:+19058192 MS.gene41955:CDS
GTGCTGACTAAGTCTCAAGA+GGG 0.686971 6.4:+19062963 MS.gene41955:CDS
TTGCGTACTGGGGAACGACG+AGG 0.706727 6.4:+19060089 MS.gene41955:CDS
TATCTATCCGGAGAATACCA+CGG 0.709255 6.4:+19061455 MS.gene41955:CDS
GTCCCCACAGGATAAACACG+TGG 0.738674 6.4:+19062941 MS.gene41955:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATTAAAGAAACTATT+GGG - chr6.4:19058373-19058392 None:intergenic 10.0%
!! AATTAATATTCTATGAAATA+CGG + chr6.4:19058393-19058412 MS.gene41955:intron 10.0%
!! AATTATTTAGTTAATATTCA+CGG + chr6.4:19058529-19058548 MS.gene41955:intron 10.0%
!! TAAATAATTAAAGAAACTAT+TGG - chr6.4:19058374-19058393 None:intergenic 10.0%
!! AAAAAAAAAAATGACTGAAT+TGG + chr6.4:19060939-19060958 MS.gene41955:intron 15.0%
!! AAAATTTGTAAAATTTGTAG+AGG - chr6.4:19059321-19059340 None:intergenic 15.0%
!! AAATTTGTAAAATTTGTAGA+GGG - chr6.4:19059320-19059339 None:intergenic 15.0%
!! ATTAAGAAAACACAAAAATT+AGG - chr6.4:19060395-19060414 None:intergenic 15.0%
!! TAAACTAATTTATTGTTGAA+TGG - chr6.4:19062589-19062608 None:intergenic 15.0%
!!! GTATTGTTTATAAGTTTTTA+AGG - chr6.4:19059147-19059166 None:intergenic 15.0%
!!! TTACAATGGTATATATTTTA+GGG + chr6.4:19061542-19061561 MS.gene41955:intron 15.0%
!!! TTATGTTTTGTTATAGAAAT+AGG + chr6.4:19058970-19058989 MS.gene41955:intron 15.0%
!!! TTCAGTCATTTTTTTTTTTA+TGG - chr6.4:19060938-19060957 None:intergenic 15.0%
!!! TTTACAATGGTATATATTTT+AGG + chr6.4:19061541-19061560 MS.gene41955:intron 15.0%
!!! TTTTAAATTATTTGTTGTGT+CGG + chr6.4:19058648-19058667 MS.gene41955:intron 15.0%
!! AAATGAAGAAAATGAAATCT+TGG - chr6.4:19060990-19061009 None:intergenic 20.0%
!! AGTTAATTCTTAAGATATTG+AGG - chr6.4:19062666-19062685 None:intergenic 20.0%
!! ATATACCATTGTAAATCAAT+TGG - chr6.4:19061536-19061555 None:intergenic 20.0%
!! ATATCTTAAGAATTAACTCT+TGG + chr6.4:19062668-19062687 MS.gene41955:intron 20.0%
!! GAAAATTGTATCTTCATAAA+CGG + chr6.4:19059105-19059124 MS.gene41955:intron 20.0%
!! GACAAGTTATTATTATTAGT+TGG - chr6.4:19059821-19059840 None:intergenic 20.0%
!! GATAATGCATAATATATGTA+AGG + chr6.4:19060890-19060909 MS.gene41955:intron 20.0%
!! TTAATTAGATAGTTAAGTGA+AGG + chr6.4:19062620-19062639 MS.gene41955:intron 20.0%
!! TTTAGATGTTAATTCAAAGT+TGG + chr6.4:19060833-19060852 MS.gene41955:CDS 20.0%
!!! AAAGAAAATGTTGATTCAAT+AGG - chr6.4:19060816-19060835 None:intergenic 20.0%
!!! AAATTCCAATTGATTTACAA+TGG + chr6.4:19061528-19061547 MS.gene41955:intron 20.0%
!!! AGTCATTTTTTTTTTTATGG+TGG - chr6.4:19060935-19060954 None:intergenic 20.0%
!!! CAACAATAAATATTTTCCAA+TGG - chr6.4:19061066-19061085 None:intergenic 20.0%
!!! CAATTGATAGTATTAATACA+TGG - chr6.4:19059377-19059396 None:intergenic 20.0%
!!! GATAAACATTGTTTTGTAAA+TGG - chr6.4:19059294-19059313 None:intergenic 20.0%
!!! TTTTCAGGAAAATAAAATAG+TGG - chr6.4:19061170-19061189 None:intergenic 20.0%
! AATAAGCTAATCCTAGTTTA+TGG + chr6.4:19059212-19059231 MS.gene41955:intron 25.0%
! AATAGTCAACGCATTAAAAA+TGG - chr6.4:19058124-19058143 None:intergenic 25.0%
! AATATGTTGATGTTCATAAC+AGG + chr6.4:19062031-19062050 MS.gene41955:CDS 25.0%
! ACAACATAGAAATTACTAGA+TGG - chr6.4:19060761-19060780 None:intergenic 25.0%
! AGAAAATAAGTGATTTCAGT+TGG - chr6.4:19062307-19062326 None:intergenic 25.0%
! ATATAAGGATGGAATTATCA+TGG - chr6.4:19062534-19062553 None:intergenic 25.0%
! ATGTCTTAACATGAATTGAA+AGG + chr6.4:19062411-19062430 MS.gene41955:intron 25.0%
! CATGTATTAAGAAAAGTTGT+TGG - chr6.4:19059489-19059508 None:intergenic 25.0%
! GAAAATAAGTGATTTCAGTT+GGG - chr6.4:19062306-19062325 None:intergenic 25.0%
! TTAAAAATTTATTCCCGTTG+CGG + chr6.4:19061485-19061504 MS.gene41955:intron 25.0%
! TTAACTAGTGTCTTCTATTT+GGG + chr6.4:19060489-19060508 MS.gene41955:intron 25.0%
! TTGCATATATCTTACATGTA+GGG - chr6.4:19061114-19061133 None:intergenic 25.0%
! TTTAACTAGTGTCTTCTATT+TGG + chr6.4:19060488-19060507 MS.gene41955:intron 25.0%
! TTTGATGCAAAGAAAAATGT+TGG + chr6.4:19061690-19061709 MS.gene41955:CDS 25.0%
! TTTGCATATATCTTACATGT+AGG - chr6.4:19061115-19061134 None:intergenic 25.0%
!! AAAATAAGTCTTGTCAACTT+TGG + chr6.4:19060193-19060212 MS.gene41955:intron 25.0%
!!! AAATTTTTAAAAACACACCG+TGG - chr6.4:19061475-19061494 None:intergenic 25.0%
!!! AATGGTCTTGTAATTAGAAT+TGG - chr6.4:19059276-19059295 None:intergenic 25.0%
!!! ATTTAACCTGCTTGTTTTTT+AGG + chr6.4:19060260-19060279 MS.gene41955:intron 25.0%
!!! ATTTCATTCAGTTTTATGTG+CGG - chr6.4:19061970-19061989 None:intergenic 25.0%
!!! ATTTTTTTTTTTATGGTGGC+CGG - chr6.4:19060931-19060950 None:intergenic 25.0%
!!! GTTACTTTCGTTCTTTTTTT+CGG + chr6.4:19059707-19059726 MS.gene41955:CDS 25.0%
!!! TCTTAGTTTCTTTGTTGTTA+GGG + chr6.4:19060868-19060887 MS.gene41955:intron 25.0%
!!! TTCTTAGTTTCTTTGTTGTT+AGG + chr6.4:19060867-19060886 MS.gene41955:intron 25.0%
AAAAGCCCAATAATATTCCT+GGG - chr6.4:19061280-19061299 None:intergenic 30.0%
AAAGAAACTATTGGGTTAAG+AGG - chr6.4:19058365-19058384 None:intergenic 30.0%
AACAAGAAAACAGCATATTC+CGG - chr6.4:19058214-19058233 None:intergenic 30.0%
AACAGCTTTCAAACAAACAA+AGG - chr6.4:19058886-19058905 None:intergenic 30.0%
AACCTGAAACAAATATTCGT+TGG - chr6.4:19060064-19060083 None:intergenic 30.0%
AAGAGTTTATCTAGGTATAG+AGG - chr6.4:19059659-19059678 None:intergenic 30.0%
AAGATGAAGTTTATGAAGCA+CGG - chr6.4:19058703-19058722 None:intergenic 30.0%
AATGATGTTGGAAATGGAAT+AGG + chr6.4:19060528-19060547 MS.gene41955:intron 30.0%
AGAAATGTGATAGCTTAAGT+TGG + chr6.4:19062765-19062784 MS.gene41955:intron 30.0%
AGAACTTCGTAAAATTGCTT+AGG - chr6.4:19059794-19059813 None:intergenic 30.0%
AGTGATTGGTATTATCACTT+TGG + chr6.4:19061884-19061903 MS.gene41955:CDS 30.0%
ATATATGCAAAACATATGCG+TGG + chr6.4:19061124-19061143 MS.gene41955:intron 30.0%
ATCCAACGAATATTTGTTTC+AGG + chr6.4:19060059-19060078 MS.gene41955:intron 30.0%
ATGATGTTGGAAATGGAATA+GGG + chr6.4:19060529-19060548 MS.gene41955:intron 30.0%
ATGCAAAGAAAAATGTTGGT+GGG + chr6.4:19061694-19061713 MS.gene41955:CDS 30.0%
ATGCTCTTTATACAAGCATA+TGG - chr6.4:19060714-19060733 None:intergenic 30.0%
ATGTTAATTCAAAGTTGGAC+TGG + chr6.4:19060838-19060857 MS.gene41955:CDS 30.0%
CAAGCAATTTGTAGTAGATA+TGG + chr6.4:19059863-19059882 MS.gene41955:CDS 30.0%
CCTTCTTACGAAAATATTCA+CGG + chr6.4:19061858-19061877 MS.gene41955:CDS 30.0%
CTTGATTGAAGAGTTTATCT+AGG - chr6.4:19059667-19059686 None:intergenic 30.0%
GAAACAAATATTCGTTGGAT+AGG - chr6.4:19060059-19060078 None:intergenic 30.0%
GAAATCCCAGGAATATTATT+GGG + chr6.4:19061272-19061291 MS.gene41955:CDS 30.0%
GAAATGTGATAGCTTAAGTT+GGG + chr6.4:19062766-19062785 MS.gene41955:intron 30.0%
GTCTTGTAATTAGAATTGGA+GGG - chr6.4:19059272-19059291 None:intergenic 30.0%
GTTAGATGTTCCGATAAAAA+GGG + chr6.4:19059517-19059536 MS.gene41955:intron 30.0%
TAAAAGCCCAATAATATTCC+TGG - chr6.4:19061281-19061300 None:intergenic 30.0%
TATCTACTACAAATTGCTTG+TGG - chr6.4:19059863-19059882 None:intergenic 30.0%
TCAGGAAAATAAAATAGTGG+AGG - chr6.4:19061167-19061186 None:intergenic 30.0%
TCGTTCAGTATATCGTATAA+AGG - chr6.4:19061582-19061601 None:intergenic 30.0%
TGCATATATCTTACATGTAG+GGG - chr6.4:19061113-19061132 None:intergenic 30.0%
TGTTAGATGTTCCGATAAAA+AGG + chr6.4:19059516-19059535 MS.gene41955:intron 30.0%
TTCAGTGTAATTACAAGTGT+CGG - chr6.4:19058601-19058620 None:intergenic 30.0%
TTCTCTTCATCAATTAGTTG+TGG - chr6.4:19061669-19061688 None:intergenic 30.0%
TTGGGCTATATTTCTTATGA+CGG - chr6.4:19062695-19062714 None:intergenic 30.0%
TTGTTGAATGGAATATGACT+TGG - chr6.4:19062577-19062596 None:intergenic 30.0%
! TTTGAGCTTGAAGCTTTTAA+TGG - chr6.4:19062469-19062488 None:intergenic 30.0%
! TTTTCCAATGGTCTAGTAAT+TGG - chr6.4:19061054-19061073 None:intergenic 30.0%
!! CAATGTCTTTCTGGAATATA+AGG - chr6.4:19062549-19062568 None:intergenic 30.0%
!! GGAATTTTTCACAGTTTGTT+TGG - chr6.4:19061515-19061534 None:intergenic 30.0%
!! TCTATGTAATGCTGTTTCTA+TGG + chr6.4:19058781-19058800 MS.gene41955:CDS 30.0%
!!! TTTTTTTTTTTATGGTGGCC+GGG - chr6.4:19060930-19060949 None:intergenic 30.0%
AACACCAATTACTAGACCAT+TGG + chr6.4:19061047-19061066 MS.gene41955:intron 35.0%
AAGTTTATGAAGCACGGATA+TGG - chr6.4:19058697-19058716 None:intergenic 35.0%
AATATTCACGGTGAAGTGAT+TGG + chr6.4:19061870-19061889 MS.gene41955:CDS 35.0%
ACAAGCACTTACCATAAACT+AGG - chr6.4:19059226-19059245 None:intergenic 35.0%
AGATAAGCGCTTATTCTCTA+AGG + chr6.4:19059003-19059022 MS.gene41955:intron 35.0%
AGCATACTGAGATAGAATCT+CGG + chr6.4:19062829-19062848 MS.gene41955:intron 35.0%
AGCATCAATGATGTTGGAAA+TGG + chr6.4:19060522-19060541 MS.gene41955:intron 35.0%
ATACATTCTCGTGCATACTT+GGG + chr6.4:19060643-19060662 MS.gene41955:intron 35.0%
ATACTGAACGAGTTCCAAAA+GGG + chr6.4:19061591-19061610 MS.gene41955:CDS 35.0%
ATAGTACAGATGTTGTTCCA+TGG + chr6.4:19059982-19060001 MS.gene41955:intron 35.0%
ATATATCTTACATGTAGGGG+TGG - chr6.4:19061110-19061129 None:intergenic 35.0%
ATGTTACCCTCTTTCTTATC+CGG + chr6.4:19059937-19059956 MS.gene41955:CDS 35.0%
ATTGGACATTTGAAAGCCAA+TGG - chr6.4:19059624-19059643 None:intergenic 35.0%
CACTACGTTCAAGAATTTCA+AGG - chr6.4:19058296-19058315 None:intergenic 35.0%
CATAATATATGTAAGGTCCG+AGG + chr6.4:19060897-19060916 MS.gene41955:intron 35.0%
CCAAGAATAAAATAGTTGCG+TGG - chr6.4:19060224-19060243 None:intergenic 35.0%
CTATTCTCGTATATAGACGA+TGG + chr6.4:19060018-19060037 MS.gene41955:intron 35.0%
CTTGAAATTCTTGAACGTAG+TGG + chr6.4:19058294-19058313 MS.gene41955:CDS 35.0%
CTTTCAAATGTCCAATATGC+AGG + chr6.4:19059628-19059647 MS.gene41955:intron 35.0%
GAAGTAAAGTAACAAGAAGC+TGG - chr6.4:19058763-19058782 None:intergenic 35.0%
GATGAGACAACAATTATCAG+TGG + chr6.4:19060309-19060328 MS.gene41955:CDS 35.0%
GATGCAAAGAAAAATGTTGG+TGG + chr6.4:19061693-19061712 MS.gene41955:CDS 35.0%
GGAAATCCCAGGAATATTAT+TGG + chr6.4:19061271-19061290 MS.gene41955:CDS 35.0%
GGTTCACAATTGATTGTGAA+AGG - chr6.4:19060374-19060393 None:intergenic 35.0%
GTAGAATTTACCTTTCCAAC+CGG - chr6.4:19059959-19059978 None:intergenic 35.0%
TATACTGAACGAGTTCCAAA+AGG + chr6.4:19061590-19061609 MS.gene41955:CDS 35.0%
TGCAAAGAAAAATGTTGGTG+GGG + chr6.4:19061695-19061714 MS.gene41955:CDS 35.0%
TTGCTATCTTTGTACTTCAC+TGG + chr6.4:19059749-19059768 MS.gene41955:intron 35.0%
TTTCACAAGCTCAAACCAAA+CGG - chr6.4:19059031-19059050 None:intergenic 35.0%
TTTCGTGTTTCTCTGTTGTA+TGG + chr6.4:19062378-19062397 MS.gene41955:intron 35.0%
! AAGCATTTTCTCAGCTCAAT+AGG - chr6.4:19062332-19062351 None:intergenic 35.0%
! AATTGCAGCACTTACCTTTT+CGG - chr6.4:19060349-19060368 None:intergenic 35.0%
! CCACGCAACTATTTTATTCT+TGG + chr6.4:19060221-19060240 MS.gene41955:intron 35.0%
! CCGTGAATATTTTCGTAAGA+AGG - chr6.4:19061861-19061880 None:intergenic 35.0%
! GGTCTTGTAATTAGAATTGG+AGG - chr6.4:19059273-19059292 None:intergenic 35.0%
! TAGGCAGGATAAAAGTTTTC+AGG - chr6.4:19061185-19061204 None:intergenic 35.0%
! TCGTATAAAGGCATATCAGA+TGG - chr6.4:19061570-19061589 None:intergenic 35.0%
! TGTTTTCTTGTTCTCTTTGC+CGG + chr6.4:19058222-19058241 MS.gene41955:CDS 35.0%
! TTAATGCCAGTAAGCTTTGA+AGG - chr6.4:19061795-19061814 None:intergenic 35.0%
! TTCGTTGGATAGGTAGTTTT+CGG - chr6.4:19060049-19060068 None:intergenic 35.0%
!! ATGTAATGCTGTTTCTATGG+AGG + chr6.4:19058784-19058803 MS.gene41955:CDS 35.0%
!! CGAATATTTGTTTCAGGTTC+TGG + chr6.4:19060065-19060084 MS.gene41955:intron 35.0%
!! GTCTTTCTGGAATATAAGGA+TGG - chr6.4:19062545-19062564 None:intergenic 35.0%
!!! TTGTTTTTTAGGCTGGGAAA+GGG + chr6.4:19060271-19060290 MS.gene41955:intron 35.0%
!!! TTTCGTTCTTTTTTTCGGTG+AGG + chr6.4:19059712-19059731 MS.gene41955:CDS 35.0%
!!! TTTTTTTTTTATGGTGGCCG+GGG - chr6.4:19060929-19060948 None:intergenic 35.0%
AAAGCTCTTGTCTCCATTCA+TGG + chr6.4:19060135-19060154 MS.gene41955:CDS 40.0%
AAGGATGGAATTATCATGGC+AGG - chr6.4:19062530-19062549 None:intergenic 40.0%
AATGCTTCCTCTATGGAGTT+CGG + chr6.4:19062345-19062364 MS.gene41955:intron 40.0%
AATTTCTTCCTGCATGCAAG+AGG - chr6.4:19061995-19062014 None:intergenic 40.0%
ACATGATCACTGGAAGTGAA+CGG - chr6.4:19060611-19060630 None:intergenic 40.0%
ACTAGTGATGGCACATTAAG+CGG + chr6.4:19061834-19061853 MS.gene41955:CDS 40.0%
ACTATTGGGTTAAGAGGAAG+AGG - chr6.4:19058359-19058378 None:intergenic 40.0%
AGGATGGAATTATCATGGCA+GGG - chr6.4:19062529-19062548 None:intergenic 40.0%
ATACTGAGATAGAATCTCGG+AGG + chr6.4:19062832-19062851 MS.gene41955:intron 40.0%
ATCCATGTTGCAGATCCAAA+AGG - chr6.4:19058183-19058202 None:intergenic 40.0%
ATCCTGCCTATCTCAAATCA+GGG + chr6.4:19061195-19061214 MS.gene41955:intron 40.0%
ATGTTGGGCTATGTCCATTA+TGG - chr6.4:19062729-19062748 None:intergenic 40.0%
CAAAGAGTTAGGCAGGTTTA+GGG - chr6.4:19059597-19059616 None:intergenic 40.0%
CATACATTCTCGTGCATACT+TGG + chr6.4:19060642-19060661 MS.gene41955:intron 40.0%
CCAAAAGGGAAGTAGTCATA+TGG + chr6.4:19061605-19061624 MS.gene41955:CDS 40.0%
CCTTCTCAGAAAAAACAAGC+TGG + chr6.4:19058321-19058340 MS.gene41955:CDS 40.0%
CTGAGAAAATGCTTCCTCTA+TGG + chr6.4:19062338-19062357 MS.gene41955:intron 40.0%
CTTGGGTTCTCTCTATTCTT+TGG + chr6.4:19060660-19060679 MS.gene41955:intron 40.0%
GAATCCAGTTCTTGTAGCAA+TGG - chr6.4:19061738-19061757 None:intergenic 40.0%
GCACGAGAATGTATGACTAA+CGG - chr6.4:19060637-19060656 None:intergenic 40.0%
GGAAGAAATTGTGGATGAGA+CGG + chr6.4:19062005-19062024 MS.gene41955:intron 40.0%
GGTTGAATTAACCATGTGCT+CGG + chr6.4:19062791-19062810 MS.gene41955:intron 40.0%
TAAGTGTAGTGTCACATAGC+AGG - chr6.4:19058455-19058474 None:intergenic 40.0%
TAATATTCACGGACAGTCCT+TGG + chr6.4:19058540-19058559 MS.gene41955:intron 40.0%
TACTCCATTGCTACAAGAAC+TGG + chr6.4:19061731-19061750 MS.gene41955:CDS 40.0%
TATCCTGCCTATCTCAAATC+AGG + chr6.4:19061194-19061213 MS.gene41955:intron 40.0%
TATCTATCCGGAGAATACCA+CGG + chr6.4:19061455-19061474 MS.gene41955:CDS 40.0%
TATGAAATACGGACACTCCT+TGG + chr6.4:19058404-19058423 MS.gene41955:intron 40.0%
TCAAAGAGTTAGGCAGGTTT+AGG - chr6.4:19059598-19059617 None:intergenic 40.0%
TCACGTGACTATGTGATGTT+GGG - chr6.4:19062744-19062763 None:intergenic 40.0%
TCCAAATCCATCTCGGATAT+GGG - chr6.4:19062900-19062919 None:intergenic 40.0%
TCTTTCTTATCCGGTTGGAA+AGG + chr6.4:19059946-19059965 MS.gene41955:CDS 40.0%
TGAAATTACCTCTTGCATGC+AGG + chr6.4:19061984-19062003 MS.gene41955:intron 40.0%
TTATACCTCCATGCCATGAA+TGG - chr6.4:19060151-19060170 None:intergenic 40.0%
TTATGCAGCGATCATTCTTC+CGG + chr6.4:19058721-19058740 MS.gene41955:intron 40.0%
TTCACAAGCTCAAACCAAAC+GGG - chr6.4:19059030-19059049 None:intergenic 40.0%
TTCCAACCGGATAAGAAAGA+GGG - chr6.4:19059946-19059965 None:intergenic 40.0%
TTCCAGAATAGACAGGAACT+CGG - chr6.4:19061255-19061274 None:intergenic 40.0%
TTCCGATAAAAAGGGACTGT+GGG + chr6.4:19059525-19059544 MS.gene41955:intron 40.0%
TTGCATGCAGGAAGAAATTG+TGG + chr6.4:19061996-19062015 MS.gene41955:intron 40.0%
TTGGACAAGCAATGTCTTTC+TGG - chr6.4:19062558-19062577 None:intergenic 40.0%
TTTCCAACCGGATAAGAAAG+AGG - chr6.4:19059947-19059966 None:intergenic 40.0%
! ACTAGTTTGCAGACTAGTGA+TGG + chr6.4:19061822-19061841 MS.gene41955:CDS 40.0%
! AGCACTTGATTTGACCGAAA+AGG + chr6.4:19060332-19060351 MS.gene41955:CDS 40.0%
! AGTAGATATGGTCTTGCTGT+AGG + chr6.4:19059875-19059894 MS.gene41955:CDS 40.0%
! CCATATGACTACTTCCCTTT+TGG - chr6.4:19061608-19061627 None:intergenic 40.0%
! GTTGTTTCCCTCAAACTAGT+AGG + chr6.4:19061082-19061101 MS.gene41955:intron 40.0%
! TAACTTGTCGCTCTAATTGC+AGG + chr6.4:19059832-19059851 MS.gene41955:intron 40.0%
! TACCTTTTGGATCTGCAACA+TGG + chr6.4:19058178-19058197 MS.gene41955:CDS 40.0%
! TCCAAAAGGTATGCTTTCGT+TGG - chr6.4:19058169-19058188 None:intergenic 40.0%
! TTTTTAACAGACTGCTGAGG+AGG + chr6.4:19060782-19060801 MS.gene41955:intron 40.0%
!! ATTATGGCAGAGGGGTATTT+GGG - chr6.4:19062713-19062732 None:intergenic 40.0%
!! GTAATTACAAGTGTCGGTGT+CGG - chr6.4:19058595-19058614 None:intergenic 40.0%
!! GTGTTTTTAACAGACTGCTG+AGG + chr6.4:19060779-19060798 MS.gene41955:intron 40.0%
!! TGTGATAGCTTAAGTTGGGA+CGG + chr6.4:19062770-19062789 MS.gene41955:intron 40.0%
!!! AACCTGCTTGTTTTTTAGGC+TGG + chr6.4:19060264-19060283 MS.gene41955:intron 40.0%
!!! ACCTGCTTGTTTTTTAGGCT+GGG + chr6.4:19060265-19060284 MS.gene41955:intron 40.0%
!!! CCAGCTTGTTTTTTCTGAGA+AGG - chr6.4:19058324-19058343 None:intergenic 40.0%
!!! CGGTGAGTTTTGGAATAACA+CGG - chr6.4:19060591-19060610 None:intergenic 40.0%
!!! CTTGTTTTTTAGGCTGGGAA+AGG + chr6.4:19060270-19060289 MS.gene41955:intron 40.0%
!!! TGGTGTTGCTTTTTAACCAC+CGG - chr6.4:19058743-19058762 None:intergenic 40.0%
!!! TGTTTTTTAGGCTGGGAAAG+GGG + chr6.4:19060272-19060291 MS.gene41955:intron 40.0%
AAACACACCGTGGTATTCTC+CGG - chr6.4:19061465-19061484 None:intergenic 45.0%
AAGGACGGAATCACGGATAA+AGG + chr6.4:19062995-19063014 MS.gene41955:CDS 45.0%
AATGGCCTCCAAATCCATCT+CGG - chr6.4:19062907-19062926 None:intergenic 45.0%
ACGCACAAGCCATGAAAAGT+TGG - chr6.4:19059903-19059922 None:intergenic 45.0%
ATGCTTCCTCTATGGAGTTC+GGG + chr6.4:19062346-19062365 MS.gene41955:intron 45.0%
CAAATACCCCTCTGCCATAA+TGG + chr6.4:19062712-19062731 MS.gene41955:intron 45.0%
CCAATGGCTGTCAAAGAGTT+AGG - chr6.4:19059608-19059627 None:intergenic 45.0%
CCATCAATCCGAAAGTTGAC+CGG + chr6.4:19062216-19062235 MS.gene41955:CDS 45.0%
CCTAACTCTTTGACAGCCAT+TGG + chr6.4:19059605-19059624 MS.gene41955:intron 45.0%
CTAACGGAACACATGATCAC+TGG - chr6.4:19060621-19060640 None:intergenic 45.0%
CTAAGTCTCAAGAGGGTAAG+CGG + chr6.4:19062970-19062989 MS.gene41955:CDS 45.0%
CTATGTCCATTATGGCAGAG+GGG - chr6.4:19062721-19062740 None:intergenic 45.0%
CTCACGTGACTATGTGATGT+TGG - chr6.4:19062745-19062764 None:intergenic 45.0%
CTCCAAATCCATCTCGGATA+TGG - chr6.4:19062901-19062920 None:intergenic 45.0%
CTGGGATTTCCAGAATAGAC+AGG - chr6.4:19061262-19061281 None:intergenic 45.0%
CTGTCAGTGCAGTATCTATC+CGG + chr6.4:19061443-19061462 MS.gene41955:CDS 45.0%
GCTATGTCCATTATGGCAGA+GGG - chr6.4:19062722-19062741 None:intergenic 45.0%
GTCAAGCCTTCAAAGCTTAC+TGG + chr6.4:19061786-19061805 MS.gene41955:CDS 45.0%
GTTCCGATAAAAAGGGACTG+TGG + chr6.4:19059524-19059543 MS.gene41955:intron 45.0%
GTTGTGAAGACTACGGGAAA+AGG + chr6.4:19061633-19061652 MS.gene41955:CDS 45.0%
GTTTGTTTGGAAGACCGCAA+CGG - chr6.4:19061502-19061521 None:intergenic 45.0%
TAAGTCTCAAGAGGGTAAGC+GGG + chr6.4:19062971-19062990 MS.gene41955:CDS 45.0%
TACCCTCTTTCTTATCCGGT+TGG + chr6.4:19059941-19059960 MS.gene41955:CDS 45.0%
TAGAGGAAGAGCCTGCATAT+TGG - chr6.4:19059642-19059661 None:intergenic 45.0%
TCACAAGCTCAAACCAAACG+GGG - chr6.4:19059029-19059048 None:intergenic 45.0%
TCCCAGCCTAAAAAACAAGC+AGG - chr6.4:19060269-19060288 None:intergenic 45.0%
TCTCTTGTCATGACCCGTAA+AGG + chr6.4:19062859-19062878 MS.gene41955:intron 45.0%
TCTTGTCTCCATTCATGGCA+TGG + chr6.4:19060140-19060159 MS.gene41955:CDS 45.0%
TGAAGCACGGATATGGACAA+CGG - chr6.4:19058690-19058709 None:intergenic 45.0%
TTAAGACCCGAACTCCATAG+AGG - chr6.4:19062355-19062374 None:intergenic 45.0%
TTTGTTTGGAAGACCGCAAC+GGG - chr6.4:19061501-19061520 None:intergenic 45.0%
! ACCCATATCCGAGATGGATT+TGG + chr6.4:19062896-19062915 MS.gene41955:intron 45.0%
! ATCTCAAATCAGGGAGGCAT+TGG + chr6.4:19061204-19061223 MS.gene41955:intron 45.0%
! ATGCCTCCCTGATTTGAGAT+AGG - chr6.4:19061204-19061223 None:intergenic 45.0%
! CATATCCGAGATGGATTTGG+AGG + chr6.4:19062899-19062918 MS.gene41955:intron 45.0%
! CTCCCACAGTCCCTTTTTAT+CGG - chr6.4:19059530-19059549 None:intergenic 45.0%
! CTGTAGGTGCCAACTTTTCA+TGG + chr6.4:19059891-19059910 MS.gene41955:CDS 45.0%
! CTGTCTATTCTGGAAATCCC+AGG + chr6.4:19061260-19061279 MS.gene41955:CDS 45.0%
! GATAGATACTGCACTGACAG+GGG - chr6.4:19061443-19061462 None:intergenic 45.0%
! GGACCTAGTCAAAAGCGTAA+TGG - chr6.4:19062925-19062944 None:intergenic 45.0%
! GGATAGATACTGCACTGACA+GGG - chr6.4:19061444-19061463 None:intergenic 45.0%
! GGTGGATCCTACTAGTTTGA+GGG - chr6.4:19061092-19061111 None:intergenic 45.0%
! TGGAAGTGAACGGTGAGTTT+TGG - chr6.4:19060601-19060620 None:intergenic 45.0%
!! AGGCCATTACGCTTTTGACT+AGG + chr6.4:19062919-19062938 MS.gene41955:intron 45.0%
!! CATTATGGCAGAGGGGTATT+TGG - chr6.4:19062714-19062733 None:intergenic 45.0%
!! CTGGGAAGCATCAATGATGT+TGG + chr6.4:19060516-19060535 MS.gene41955:intron 45.0%
!! GCCAACGAAAGCATACCTTT+TGG + chr6.4:19058165-19058184 MS.gene41955:CDS 45.0%
!! GGAACGACGAGGCTTTATTT+AGG + chr6.4:19060100-19060119 MS.gene41955:CDS 45.0%
!! GTGCTGACTAAGTCTCAAGA+GGG + chr6.4:19062963-19062982 MS.gene41955:CDS 45.0%
!! TCTCAAATCAGGGAGGCATT+GGG + chr6.4:19061205-19061224 MS.gene41955:intron 45.0%
!! TTATTCTCTAAGGCCCCGTT+TGG + chr6.4:19059013-19059032 MS.gene41955:intron 45.0%
!!! GTTTTTTAGGCTGGGAAAGG+GGG + chr6.4:19060273-19060292 MS.gene41955:intron 45.0%
!!! TTTTCTTTTTATAAATAATT+AGG + chr6.4:19061381-19061400 MS.gene41955:intron 5.0%
ACATGCCACGATTCCTGGAA+GGG + chr6.4:19063020-19063039 MS.gene41955:CDS 50.0%
ACTAGACTCCGCTCCTTTAC+GGG - chr6.4:19062875-19062894 None:intergenic 50.0%
AGCACCACGTGTTTATCCTG+TGG - chr6.4:19062948-19062967 None:intergenic 50.0%
AGCCGAGTTCCTGTCTATTC+TGG + chr6.4:19061250-19061269 MS.gene41955:CDS 50.0%
AGTTGCAGCTGCTTCCTCAA+TGG + chr6.4:19062185-19062204 MS.gene41955:CDS 50.0%
ATACGGACACTCCTTGGATC+AGG + chr6.4:19058410-19058429 MS.gene41955:intron 50.0%
ATAGCCAGAGCTTGATGCCA+TGG - chr6.4:19060002-19060021 None:intergenic 50.0%
CACCACGTGTTTATCCTGTG+GGG - chr6.4:19062946-19062965 None:intergenic 50.0%
CACTAGACTCCGCTCCTTTA+CGG - chr6.4:19062876-19062895 None:intergenic 50.0%
CATGAGACCAAGTGTGAGAC+CGG - chr6.4:19058256-19058275 None:intergenic 50.0%
CCGGTCAACTTTCGGATTGA+TGG - chr6.4:19062219-19062238 None:intergenic 50.0%
CGAAAGTTGACCGGCCAAAA+GGG + chr6.4:19062225-19062244 MS.gene41955:CDS 50.0%
CTAGTGACCCATATCCGAGA+TGG + chr6.4:19062890-19062909 MS.gene41955:intron 50.0%
CTGAGATAGAATCTCGGAGG+AGG + chr6.4:19062835-19062854 MS.gene41955:intron 50.0%
CTGCCTATCTCAAATCAGGG+AGG + chr6.4:19061198-19061217 MS.gene41955:intron 50.0%
GCACCACGTGTTTATCCTGT+GGG - chr6.4:19062947-19062966 None:intergenic 50.0%
GCTGCTGTTGTGAAGACTAC+GGG + chr6.4:19061627-19061646 MS.gene41955:CDS 50.0%
GGCTATGTCCATTATGGCAG+AGG - chr6.4:19062723-19062742 None:intergenic 50.0%
GGCTGCTGTTGTGAAGACTA+CGG + chr6.4:19061626-19061645 MS.gene41955:CDS 50.0%
GTCTTCTATTTGGGCACGCT+GGG + chr6.4:19060498-19060517 MS.gene41955:intron 50.0%
TATGGACAACGGACACGACA+TGG - chr6.4:19058679-19058698 None:intergenic 50.0%
TCACGGACAGTCCTTGGATT+AGG + chr6.4:19058546-19058565 MS.gene41955:intron 50.0%
TGGCTGTCAAAGAGTTAGGC+AGG - chr6.4:19059604-19059623 None:intergenic 50.0%
TGTCATGACCCGTAAAGGAG+CGG + chr6.4:19062864-19062883 MS.gene41955:intron 50.0%
TGTCTCCATTCATGGCATGG+AGG + chr6.4:19060143-19060162 MS.gene41955:CDS 50.0%
TGTCTTCTATTTGGGCACGC+TGG + chr6.4:19060497-19060516 MS.gene41955:intron 50.0%
TGTTCCATGGCATCAAGCTC+TGG + chr6.4:19059995-19060014 MS.gene41955:intron 50.0%
TTGGGAAAGATTCTTGCCCG+CGG + chr6.4:19061223-19061242 MS.gene41955:CDS 50.0%
! AACCGCTTACTGCTCCCTTT+TGG - chr6.4:19062242-19062261 None:intergenic 50.0%
! CCTTTTGGCCGGTCAACTTT+CGG - chr6.4:19062227-19062246 None:intergenic 50.0%
! CGGATAGATACTGCACTGAC+AGG - chr6.4:19061445-19061464 None:intergenic 50.0%
! CTCCCTGATTTGAGATAGGC+AGG - chr6.4:19061200-19061219 None:intergenic 50.0%
! GCAACATGGATTGCTTACGC+CGG + chr6.4:19058192-19058211 MS.gene41955:CDS 50.0%
! GGGTGGATCCTACTAGTTTG+AGG - chr6.4:19061093-19061112 None:intergenic 50.0%
! TTTCGTTGGCGAGAGCATGA+TGG - chr6.4:19058155-19058174 None:intergenic 50.0%
!! AGGTTCTGGATTGCGTACTG+GGG + chr6.4:19060079-19060098 MS.gene41955:intron 50.0%
!! CAGGTTCTGGATTGCGTACT+GGG + chr6.4:19060078-19060097 MS.gene41955:intron 50.0%
!! GGTGCTGACTAAGTCTCAAG+AGG + chr6.4:19062962-19062981 MS.gene41955:CDS 50.0%
!! TCAGGTTCTGGATTGCGTAC+TGG + chr6.4:19060077-19060096 MS.gene41955:intron 50.0%
AAGGTCCGAGGTTCAAACCC+CGG + chr6.4:19060909-19060928 MS.gene41955:intron 55.0%
ACATAGCAGGTGTCCGACAC+CGG - chr6.4:19058442-19058461 None:intergenic 55.0%
AGAGGGTAAGCGGGAAAGGA+CGG + chr6.4:19062980-19062999 MS.gene41955:CDS 55.0%
AGCGGGAAAGGACGGAATCA+CGG + chr6.4:19062988-19063007 MS.gene41955:CDS 55.0%
CACATGCCACGATTCCTGGA+AGG + chr6.4:19063019-19063038 MS.gene41955:CDS 55.0%
CCGAAAGTTGACCGGCCAAA+AGG + chr6.4:19062224-19062243 MS.gene41955:CDS 55.0%
CTCAAGAGGGTAAGCGGGAA+AGG + chr6.4:19062976-19062995 MS.gene41955:CDS 55.0%
CTCTTTGCCGGAGTCATGTC+CGG + chr6.4:19058234-19058253 MS.gene41955:CDS 55.0%
CTGACAGGGGTCTCTGATTC+AGG - chr6.4:19061430-19061449 None:intergenic 55.0%
CTTCCAGGAATCGTGGCATG+TGG - chr6.4:19063021-19063040 None:intergenic 55.0%
GGCCAAAAGGGAGCAGTAAG+CGG + chr6.4:19062237-19062256 MS.gene41955:intron 55.0%
GTCATGTCCGGTCTCACACT+TGG + chr6.4:19058246-19058265 MS.gene41955:CDS 55.0%
GTCCCCACAGGATAAACACG+TGG + chr6.4:19062941-19062960 MS.gene41955:intron 55.0%
TAACCATGTGCTCGGCGTGT+GGG + chr6.4:19062799-19062818 MS.gene41955:intron 55.0%
TCCTTGGATCAGGTGTGTCC+CGG + chr6.4:19058420-19058439 MS.gene41955:intron 55.0%
TGCAGCGATCATTCTTCCGG+TGG + chr6.4:19058724-19058743 MS.gene41955:intron 55.0%
TGGGAAAGATTCTTGCCCGC+GGG + chr6.4:19061224-19061243 MS.gene41955:CDS 55.0%
TGTCGGACATGACACGACAC+CGG - chr6.4:19058578-19058597 None:intergenic 55.0%
TGTGAGACCGGACATGACTC+CGG - chr6.4:19058244-19058263 None:intergenic 55.0%
TTAACCATGTGCTCGGCGTG+TGG + chr6.4:19062798-19062817 MS.gene41955:intron 55.0%
! GCTTACTGCTCCCTTTTGGC+CGG - chr6.4:19062238-19062257 None:intergenic 55.0%
! TCCTTGGATTAGGCGTGTCC+CGG + chr6.4:19058556-19058575 MS.gene41955:intron 55.0%
! TGATGGAGCTCGTGCCATTG+AGG - chr6.4:19062202-19062221 None:intergenic 55.0%
! TTGGCGAGAGCATGATGGTC+AGG - chr6.4:19058150-19058169 None:intergenic 55.0%
!! GCTTTTGACTAGGTCCCCAC+AGG + chr6.4:19062929-19062948 MS.gene41955:intron 55.0%
ACCGGGACACACCTGATCCA+AGG - chr6.4:19058424-19058443 None:intergenic 60.0%
ACCGGGACACGCCTAATCCA+AGG - chr6.4:19058560-19058579 None:intergenic 60.0%
AGGCCACATGCCACGATTCC+TGG + chr6.4:19063015-19063034 MS.gene41955:CDS 60.0%
CATAGCAGGTGTCCGACACC+GGG - chr6.4:19058441-19058460 None:intergenic 60.0%
GATCAGGTGTGTCCCGGTGT+CGG + chr6.4:19058426-19058445 MS.gene41955:intron 60.0%
GTCGGACATGACACGACACC+GGG - chr6.4:19058577-19058596 None:intergenic 60.0%
TGCCACGATTCCTGGAAGGG+CGG + chr6.4:19063023-19063042 MS.gene41955:CDS 60.0%
TTCCGCCCTTCCAGGAATCG+TGG - chr6.4:19063028-19063047 None:intergenic 60.0%
TTGCGTACTGGGGAACGACG+AGG + chr6.4:19060089-19060108 MS.gene41955:CDS 60.0%
GGTGGCCGGGGTTTGAACCT+CGG - chr6.4:19060917-19060936 None:intergenic 65.0%
TCTCCCACACGCCGAGCACA+TGG - chr6.4:19062805-19062824 None:intergenic 65.0%
AGGAACTCGGCTGTGCCCGC+GGG - chr6.4:19061242-19061261 None:intergenic 70.0%
CAGGAACTCGGCTGTGCCCG+CGG - chr6.4:19061243-19061262 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 19058108 19063052 19058108 ID=MS.gene41955
chr6.4 mRNA 19058108 19063052 19058108 ID=MS.gene41955.t1;Parent=MS.gene41955
chr6.4 exon 19058108 19058342 19058108 ID=MS.gene41955.t1.exon1;Parent=MS.gene41955.t1
chr6.4 CDS 19058108 19058342 19058108 ID=cds.MS.gene41955.t1;Parent=MS.gene41955.t1
chr6.4 exon 19058729 19058805 19058729 ID=MS.gene41955.t1.exon2;Parent=MS.gene41955.t1
chr6.4 CDS 19058729 19058805 19058729 ID=cds.MS.gene41955.t1;Parent=MS.gene41955.t1
chr6.4 exon 19059650 19059733 19059650 ID=MS.gene41955.t1.exon3;Parent=MS.gene41955.t1
chr6.4 CDS 19059650 19059733 19059650 ID=cds.MS.gene41955.t1;Parent=MS.gene41955.t1
chr6.4 exon 19059854 19059967 19059854 ID=MS.gene41955.t1.exon4;Parent=MS.gene41955.t1
chr6.4 CDS 19059854 19059967 19059854 ID=cds.MS.gene41955.t1;Parent=MS.gene41955.t1
chr6.4 exon 19060081 19060164 19060081 ID=MS.gene41955.t1.exon5;Parent=MS.gene41955.t1
chr6.4 CDS 19060081 19060164 19060081 ID=cds.MS.gene41955.t1;Parent=MS.gene41955.t1
chr6.4 exon 19060282 19060353 19060282 ID=MS.gene41955.t1.exon6;Parent=MS.gene41955.t1
chr6.4 CDS 19060282 19060353 19060282 ID=cds.MS.gene41955.t1;Parent=MS.gene41955.t1
chr6.4 exon 19060792 19060859 19060792 ID=MS.gene41955.t1.exon7;Parent=MS.gene41955.t1
chr6.4 CDS 19060792 19060859 19060792 ID=cds.MS.gene41955.t1;Parent=MS.gene41955.t1
chr6.4 exon 19061216 19061303 19061216 ID=MS.gene41955.t1.exon8;Parent=MS.gene41955.t1
chr6.4 CDS 19061216 19061303 19061216 ID=cds.MS.gene41955.t1;Parent=MS.gene41955.t1
chr6.4 exon 19061403 19061476 19061403 ID=MS.gene41955.t1.exon9;Parent=MS.gene41955.t1
chr6.4 CDS 19061403 19061476 19061403 ID=cds.MS.gene41955.t1;Parent=MS.gene41955.t1
chr6.4 exon 19061563 19061932 19061563 ID=MS.gene41955.t1.exon10;Parent=MS.gene41955.t1
chr6.4 CDS 19061563 19061932 19061563 ID=cds.MS.gene41955.t1;Parent=MS.gene41955.t1
chr6.4 exon 19062006 19062052 19062006 ID=MS.gene41955.t1.exon11;Parent=MS.gene41955.t1
chr6.4 CDS 19062006 19062052 19062006 ID=cds.MS.gene41955.t1;Parent=MS.gene41955.t1
chr6.4 exon 19062170 19062251 19062170 ID=MS.gene41955.t1.exon12;Parent=MS.gene41955.t1
chr6.4 CDS 19062170 19062251 19062170 ID=cds.MS.gene41955.t1;Parent=MS.gene41955.t1
chr6.4 exon 19062951 19063052 19062951 ID=MS.gene41955.t1.exon13;Parent=MS.gene41955.t1
chr6.4 CDS 19062951 19063052 19062951 ID=cds.MS.gene41955.t1;Parent=MS.gene41955.t1
Gene Sequence

>MS.gene41955

ATGAAGTTTGGAACCATTTTTAATGCGTTGACTATTACTCCTGACCATCATGCTCTCGCCAACGAAAGCATACCTTTTGGATCTGCAACATGGATTGCTTACGCCGGAATATGCTGTTTTCTTGTTCTCTTTGCCGGAGTCATGTCCGGTCTCACACTTGGTCTCATGTCTCTCAGTCTTGTAGACCTTGAAATTCTTGAACGTAGTGGTTCTCCTTCTCAGAAAAAACAAGCTGGTAGTTACTTAATCCTCTTCCTCTTAACCCAATAGTTTCTTTAATTATTTAATTAATATTCTATGAAATACGGACACTCCTTGGATCAGGTGTGTCCCGGTGTCGGACACCTGCTATGTGACACTACACTTATAATTACACTGAATTACATGAATTATGTGATTTTTTCAAATTATTAGTTTCTTTAATTATTTAGTTAATATTCACGGACAGTCCTTGGATTAGGCGTGTCCCGGTGTCGTGTCATGTCCGACACCGACACTTGTAATTACACTGAATTATAATTACATTGAATTATGTGATTTTTTTAAATTATTTGTTGTGTCGGCGTGTCCATGTCGTGTCCGTTGTCCATATCCGTGCTTCATAAACTTCATCTTATGCAGCGATCATTCTTCCGGTGGTTAAAAAGCAACACCAGCTTCTTGTTACTTTACTTCTATGTAATGCTGTTTCTATGGAGGTAATTCAATTTTAATACAATTATATTGACTTATTTAAGTAGTTTATCTATTGAAATTAACACTTGTGTTGTGAGATCCTTTGTTTGTTTGAAAGCTGTTTTCAACTTGTTTCTATAATCTTTGCATGATAGCTAGCTTATGCGAAAATAGTTTTGACTTTATTTTATGTTTTGTTATAGAAATAGGTTATACATATAGATAAGCGCTTATTCTCTAAGGCCCCGTTTGGTTTGAGCTTGTGAAAAATAGCTTATGTAAATAAATAAGCTTTTATTTTAATTTATAAGCTCTCACTAACGAAAATTGTATCTTCATAAACGGTTTTTTTCATAAACTACCTTAAAAACTTATAAACAATACATAAAAACTTATTTATTTGCATAAGCTGTTTTATATAAGCTCTAAAATAAGCTAATCCTAGTTTATGGTAAGTGCTTGTGCTATAAGCATTTGATTAATACTCCCTCCAATTCTAATTACAAGACCATTTACAAAACAATGTTTATCAGACCCTCTACAAATTTTACAAATTTTTAGATGCTTTTATTATTCTTTTTTTCAAATATACCATGTATTAATACTATCAATTGACTTGAAATATGAAAAAGTACGATTGAATGCATTATATATAAAGAGTAATTTAGTAATAATCATACATTTTTGTGATAAATTTATTTCTCCAACAACTTTTCTTAATACATGTAATTTTTGTTAGATGTTCCGATAAAAAGGGACTGTGGGAGTTCTTCATTTTGATTTTGTTTACACTTTACAGTTTACACTGATTCCCTAAACCTGCCTAACTCTTTGACAGCCATTGGCTTTCAAATGTCCAATATGCAGGCTCTTCCTCTATACCTAGATAAACTCTTCAATCAAGTTCTTGCTATCATTCTCTCTGTTACTTTCGTTCTTTTTTTCGGTGAGGTATGTCATTTTTTTTTGCTATCTTTGTACTTCACTGGTTTAGTCTCAACTTTTTTACCTAAGCAATTTTACGAAGTTCTTTTTCCAACTAATAATAATAACTTGTCGCTCTAATTGCAGGTTATTCCACAAGCAATTTGTAGTAGATATGGTCTTGCTGTAGGTGCCAACTTTTCATGGCTTGTGCGTATTTTAATGATTATATGTTACCCTCTTTCTTATCCGGTTGGAAAGGTAAATTCTACTATATAGTACAGATGTTGTTCCATGGCATCAAGCTCTGGCTATTCTCGTATATAGACGATGGCATCACCGAAAACTACCTATCCAACGAATATTTGTTTCAGGTTCTGGATTGCGTACTGGGGAACGACGAGGCTTTATTTAGGCGTGCTCAGTTAAAAGCTCTTGTCTCCATTCATGGCATGGAGGTATAAATGAATATTCTTTTTAGTAAACAAAATAAGTCTTGTCAACTTTGGTGAAGCCACGCAACTATTTTATTCTTGGTGTTAGATTCATAATCATTTAACCTGCTTGTTTTTTAGGCTGGGAAAGGGGGCGAACTTACACATGATGAGACAACAATTATCAGTGGAGCACTTGATTTGACCGAAAAGGTAAGTGCTGCAATTCACCTTTCACAATCAATTGTGAACCTAATTTTTGTGTTTTCTTAATGTCAATACGATACAAATTTTCAATATATGATATTCAATGCAGCAGAATATGAAGTTTCTTATCTGTCTTGAGTTTTAACTAGTGTCTTCTATTTGGGCACGCTGGGAAGCATCAATGATGTTGGAAATGGAATAGGGAACTAATGTTTATTAAATATTTATCAATGTGTCATGCCGTGTTATTCCAAAACTCACCGTTCACTTCCAGTGATCATGTGTTCCGTTAGTCATACATTCTCGTGCATACTTGGGTTCTCTCTATTCTTTGGTTCATTATTAACTATATCATGCTGTAAACCATATGCTTGTATAAAGAGCATATTTAAATTTAATGCATTATTTTTCCATCTAGTAATTTCTATGTTGTGTTTTTAACAGACTGCTGAGGAGGCTATGACTCCTATTGAATCAACATTTTCTTTAGATGTTAATTCAAAGTTGGACTGGTAAGCTTTCTTAGTTTCTTTGTTGTTAGGGATAATGCATAATATATGTAAGGTCCGAGGTTCAAACCCCGGCCACCATAAAAAAAAAAATGACTGAATTGGTTCTAAAAATGACTTTTCTATTTGTCCAAGATTTCATTTTCTTCATTTTTACAACTTATTGTTATGTTGACAATTTCTTGTCAACAACACCAATTACTAGACCATTGGAAAATATTTATTGTTGTTTCCCTCAAACTAGTAGGATCCACCCCTACATGTAAGATATATGCAAAACATATGCGTGGAGTAGAATCGTGTTTTTCCTCCACTATTTTATTTTCCTGAAAACTTTTATCCTGCCTATCTCAAATCAGGGAGGCATTGGGAAAGATTCTTGCCCGCGGGCACAGCCGAGTTCCTGTCTATTCTGGAAATCCCAGGAATATTATTGGGCTTTTAATTGTGTGTATTTTTCTACATTTTGACTTTATTTATATTATCTAATTTCTTTTATGTTCTTTTTTCGTCACATGTTTGTTTTTTCTTTTTATAAATAATTAGGTAAAAAATCTTCTTACTGTTAGACCTGAATCAGAGACCCCTGTCAGTGCAGTATCTATCCGGAGAATACCACGGTGTGTTTTTAAAAATTTATTCCCGTTGCGGTCTTCCAAACAAACTGTGAAAAATTCCAATTGATTTACAATGGTATATATTTTAGGGTTCCATCTGATATGCCTTTATACGATATACTGAACGAGTTCCAAAAGGGAAGTAGTCATATGGCTGCTGTTGTGAAGACTACGGGAAAAGGCAAAGAAACTCCACAACTAATTGATGAAGAGAAATTTGATGCAAAGAAAAATGTTGGTGGGGATTCACAGTTAACTACTCCATTGCTACAAGAACTGGATTCAAAATCAGAAAATGTTGTTGTTGACATTGTCAAGCCTTCAAAGCTTACTGGCATTAATATGCAAACTAGTTTGCAGACTAGTGATGGCACATTAAGCGGTCCTTCTTACGAAAATATTCACGGTGAAGTGATTGGTATTATCACTTTGGAAGATGTATTTGAAGAACTTCTGCAAGTAAATTTCTGTCTTCTGCAAGTTAATTTTTCTTCCGCACATAAAACTGAATGAAATTACCTCTTGCATGCAGGAAGAAATTGTGGATGAGACGGATGAATATGTTGATGTTCATAACAGGTAATAGAGACTAGAGACTATACACAAGAGAGTATCAAAATAAAATATACACAAGAGAGTATCAAAATAAAATTACTGTAAATTTGAATTTTAATGATGTATAATTTTATTTTGCAGAATACGTGTTGCAGCAGTTGCAGCTGCTTCCTCAATGGCACGAGCTCCATCAATCCGAAAGTTGACCGGCCAAAAGGGAGCAGTAAGCGGTTTAACATTACACTATTTTAATATTTGTTTCTCTGATATAGTTCCCAACTGAAATCACTTATTTTCTTTCCTATTGAGCTGAGAAAATGCTTCCTCTATGGAGTTCGGGTCTTAAACTTTTCGTGTTTCTCTGTTGTATGGTATATTTCTCATGTCTTAACATGAATTGAAAGGATTTATATCTTAGTCTAAGCTTATCTCTTCTTCCATTAAAAGCTTCAAGCTCAAATAATTTTTTAGATTTAAAAACTATATAGAAATTCAAACCCTGCCATGATAATTCCATCCTTATATTCCAGAAAGACATTGCTTGTCCAAGTCATATTCCATTCAACAATAAATTAGTTTAAGCATTATCTTTTAATTAGATAGTTAAGTGAAGGATAAATAGTTGTGATCTATACCTCAATATCTTAAGAATTAACTCTTGGACCGTCATAAGAAATATAGCCCAAATACCCCTCTGCCATAATGGACATAGCCCAACATCACATAGTCACGTGAGAGAAATGTGATAGCTTAAGTTGGGACGGTTGAATTAACCATGTGCTCGGCGTGTGGGAGAGATAAGCATACTGAGATAGAATCTCGGAGGAGGCTCTCTTGTCATGACCCGTAAAGGAGCGGAGTCTAGTGACCCATATCCGAGATGGATTTGGAGGCCATTACGCTTTTGACTAGGTCCCCACAGGATAAACACGTGGTGCTGACTAAGTCTCAAGAGGGTAAGCGGGAAAGGACGGAATCACGGATAAAGGCCACATGCCACGATTCCTGGAAGGGCGGAATCTAG

Protein sequence

>MS.gene41955.t1

MKFGTIFNALTITPDHHALANESIPFGSATWIAYAGICCFLVLFAGVMSGLTLGLMSLSLVDLEILERSGSPSQKKQAAIILPVVKKQHQLLVTLLLCNAVSMEALPLYLDKLFNQVLAIILSVTFVLFFGEVIPQAICSRYGLAVGANFSWLVRILMIICYPLSYPVGKVLDCVLGNDEALFRRAQLKALVSIHGMEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEALGKILARGHSRVPVYSGNPRNIIGLLIVKNLLTVRPESETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKTTGKGKETPQLIDEEKFDAKKNVGGDSQLTTPLLQELDSKSENVVVDIVKPSKLTGINMQTSLQTSDGTLSGPSYENIHGEVIGIITLEDVFEELLQEEIVDETDEYVDVHNRIRVAAVAAASSMARAPSIRKLTGQKGADKHVVLTKSQEGKRERTESRIKATCHDSWKGGI