Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42007.t1 | XP_003626350.1 | 84.3 | 581 | 83 | 3 | 1 | 573 | 1 | 581 | 4.80E-277 | 963.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42007.t1 | Q5XQC7 | 65.9 | 580 | 183 | 5 | 1 | 566 | 1 | 579 | 4.8e-217 | 755.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42007.t1 | A2Q3G1 | 84.3 | 581 | 83 | 3 | 1 | 573 | 1 | 581 | 3.5e-277 | 963.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene000424 | MS.gene42007 | PPI |
| MS.gene030511 | MS.gene42007 | PPI |
| MS.gene42007 | MS.gene70112 | PPI |
| MS.gene42007 | MS.gene49772 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42007.t1 | MTR_7g114130 | 84.337 | 581 | 83 | 3 | 1 | 573 | 1 | 581 | 0.0 | 1001 |
| MS.gene42007.t1 | MTR_1g048160 | 82.118 | 576 | 99 | 2 | 1 | 572 | 1 | 576 | 0.0 | 979 |
| MS.gene42007.t1 | MTR_8g096190 | 58.478 | 578 | 226 | 4 | 1 | 565 | 1 | 577 | 0.0 | 683 |
| MS.gene42007.t1 | MTR_8g096190 | 57.636 | 550 | 219 | 4 | 1 | 537 | 1 | 549 | 0.0 | 639 |
| MS.gene42007.t1 | MTR_8g096190 | 56.814 | 521 | 211 | 4 | 1 | 508 | 1 | 520 | 0.0 | 594 |
| MS.gene42007.t1 | MTR_7g114100 | 70.439 | 433 | 91 | 6 | 145 | 573 | 13 | 412 | 0.0 | 590 |
| MS.gene42007.t1 | MTR_7g033100 | 32.000 | 250 | 123 | 9 | 330 | 554 | 107 | 334 | 3.80e-22 | 99.8 |
| MS.gene42007.t1 | MTR_7g033100 | 32.000 | 250 | 123 | 9 | 330 | 554 | 107 | 334 | 4.84e-22 | 99.0 |
| MS.gene42007.t1 | MTR_3g086520 | 32.271 | 251 | 121 | 11 | 330 | 554 | 125 | 352 | 1.49e-20 | 95.1 |
| MS.gene42007.t1 | MTR_3g086520 | 32.271 | 251 | 121 | 11 | 330 | 554 | 125 | 352 | 1.62e-20 | 95.1 |
| MS.gene42007.t1 | MTR_3g086520 | 32.271 | 251 | 121 | 11 | 330 | 554 | 122 | 349 | 1.63e-20 | 95.1 |
| MS.gene42007.t1 | MTR_3g075530 | 29.078 | 282 | 147 | 12 | 324 | 574 | 88 | 347 | 2.59e-20 | 94.4 |
| MS.gene42007.t1 | MTR_8g089670 | 30.403 | 273 | 140 | 10 | 330 | 577 | 132 | 379 | 2.31e-19 | 91.7 |
| MS.gene42007.t1 | MTR_6g092020 | 28.364 | 275 | 143 | 9 | 330 | 572 | 74 | 326 | 4.44e-19 | 90.1 |
| MS.gene42007.t1 | MTR_2g063843 | 28.364 | 275 | 143 | 9 | 330 | 572 | 87 | 339 | 5.23e-19 | 89.7 |
| MS.gene42007.t1 | MTR_8g447220 | 26.686 | 341 | 185 | 13 | 278 | 576 | 26 | 343 | 6.98e-19 | 89.7 |
| MS.gene42007.t1 | MTR_8g447220 | 27.719 | 285 | 162 | 9 | 278 | 541 | 26 | 287 | 1.79e-18 | 87.0 |
| MS.gene42007.t1 | MTR_2g063857 | 27.698 | 278 | 144 | 9 | 330 | 572 | 95 | 350 | 2.44e-18 | 88.2 |
| MS.gene42007.t1 | MTR_2g063907 | 28.058 | 278 | 143 | 9 | 330 | 572 | 81 | 336 | 2.49e-18 | 87.8 |
| MS.gene42007.t1 | MTR_6g092100 | 28.261 | 276 | 143 | 9 | 330 | 572 | 29 | 282 | 3.34e-18 | 85.9 |
| MS.gene42007.t1 | MTR_2g063857 | 27.698 | 278 | 144 | 9 | 330 | 572 | 95 | 350 | 4.44e-18 | 86.7 |
| MS.gene42007.t1 | MTR_3g096520 | 28.882 | 322 | 168 | 15 | 269 | 554 | 39 | 335 | 1.71e-17 | 85.5 |
| MS.gene42007.t1 | MTR_3g096520 | 28.261 | 322 | 170 | 14 | 269 | 554 | 56 | 352 | 1.74e-17 | 85.9 |
| MS.gene42007.t1 | MTR_3g096520 | 28.882 | 322 | 168 | 15 | 269 | 554 | 39 | 335 | 1.78e-17 | 85.5 |
| MS.gene42007.t1 | MTR_6g021730 | 29.032 | 248 | 133 | 8 | 330 | 554 | 127 | 354 | 2.52e-17 | 85.5 |
| MS.gene42007.t1 | MTR_7g081170 | 27.742 | 155 | 95 | 4 | 359 | 504 | 85 | 231 | 1.43e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42007.t1 | AT1G08860 | 65.862 | 580 | 183 | 5 | 1 | 566 | 1 | 579 | 0.0 | 783 |
| MS.gene42007.t1 | AT5G61910 | 58.406 | 577 | 228 | 3 | 1 | 566 | 769 | 1344 | 0.0 | 692 |
| MS.gene42007.t1 | AT5G61900 | 58.406 | 577 | 228 | 3 | 1 | 566 | 1 | 576 | 0.0 | 689 |
| MS.gene42007.t1 | AT5G61900 | 58.406 | 577 | 228 | 3 | 1 | 566 | 1 | 576 | 0.0 | 689 |
| MS.gene42007.t1 | AT5G07300 | 55.979 | 577 | 239 | 4 | 1 | 563 | 1 | 576 | 0.0 | 662 |
| MS.gene42007.t1 | AT1G67800 | 31.200 | 250 | 125 | 9 | 330 | 554 | 93 | 320 | 3.70e-21 | 96.7 |
| MS.gene42007.t1 | AT1G67800 | 31.200 | 250 | 125 | 9 | 330 | 554 | 93 | 320 | 3.70e-21 | 96.7 |
| MS.gene42007.t1 | AT1G67800 | 31.200 | 250 | 125 | 9 | 330 | 554 | 93 | 320 | 3.70e-21 | 96.7 |
| MS.gene42007.t1 | AT1G67800 | 31.200 | 250 | 125 | 9 | 330 | 554 | 93 | 320 | 3.70e-21 | 96.7 |
| MS.gene42007.t1 | AT1G67800 | 31.200 | 250 | 125 | 9 | 330 | 554 | 113 | 340 | 4.70e-21 | 96.7 |
| MS.gene42007.t1 | AT1G67800 | 31.200 | 250 | 125 | 9 | 330 | 554 | 113 | 340 | 4.75e-21 | 96.3 |
| MS.gene42007.t1 | AT3G01650 | 31.600 | 250 | 124 | 9 | 330 | 554 | 156 | 383 | 2.09e-20 | 95.1 |
| MS.gene42007.t1 | AT3G01650 | 31.600 | 250 | 124 | 9 | 330 | 554 | 156 | 383 | 2.09e-20 | 95.1 |
| MS.gene42007.t1 | AT5G14420 | 30.400 | 250 | 127 | 9 | 330 | 554 | 122 | 349 | 9.98e-20 | 92.8 |
| MS.gene42007.t1 | AT5G14420 | 30.400 | 250 | 127 | 9 | 330 | 554 | 122 | 349 | 9.98e-20 | 92.8 |
| MS.gene42007.t1 | AT5G14420 | 30.400 | 250 | 127 | 9 | 330 | 554 | 122 | 349 | 9.98e-20 | 92.8 |
| MS.gene42007.t1 | AT5G14420 | 30.400 | 250 | 127 | 9 | 330 | 554 | 122 | 349 | 9.98e-20 | 92.8 |
| MS.gene42007.t1 | AT5G63970 | 28.669 | 293 | 155 | 11 | 315 | 574 | 16 | 287 | 1.07e-18 | 88.6 |
| MS.gene42007.t1 | AT5G63970 | 28.669 | 293 | 155 | 11 | 315 | 574 | 16 | 287 | 1.07e-18 | 88.6 |
| MS.gene42007.t1 | AT1G79380 | 28.625 | 269 | 143 | 10 | 315 | 554 | 58 | 306 | 4.87e-18 | 87.0 |
Find 122 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACATCAATTATATACATTT+TGG | 0.084771 | 6.4:+17204908 | None:intergenic |
| TGCTTTAACCACAGCATTTA+TGG | 0.114808 | 6.4:+17205648 | None:intergenic |
| CTATATGGACCCACATTATT+TGG | 0.120245 | 6.4:-17205952 | MS.gene42007:CDS |
| AGACAAAGTGGTCTCCATTT+TGG | 0.193575 | 6.4:+17207658 | None:intergenic |
| TTCTGTTGTACAAGCTCTTT+TGG | 0.196545 | 6.4:-17205010 | MS.gene42007:CDS |
| TTACGAAGTGTGAGTCTATA+TGG | 0.268277 | 6.4:-17205967 | MS.gene42007:CDS |
| TAATAAAATGTTTCCTGCTT+GGG | 0.269847 | 6.4:-17206269 | MS.gene42007:CDS |
| ATAACTTCAGTCTTTGAAAT+AGG | 0.278320 | 6.4:+17207697 | None:intergenic |
| CACGGCATCATTGTTCTTCT+CGG | 0.285193 | 6.4:+17209085 | None:intergenic |
| ACATTATCTTTCGTTGTTCT+CGG | 0.299853 | 6.4:-17207896 | MS.gene42007:CDS |
| TTTGCAGCCATGTTCATTAC+AGG | 0.304763 | 6.4:+17205928 | None:intergenic |
| TTCTCACCTCAGAGTTGATT+GGG | 0.321477 | 6.4:+17206188 | None:intergenic |
| TGGATTCGAACTAAATTTCA+TGG | 0.331679 | 6.4:-17206941 | MS.gene42007:CDS |
| CCCTTATCGATTCTTATAGT+TGG | 0.331752 | 6.4:-17205616 | MS.gene42007:CDS |
| ATTGCATATGCCACAATCAT+AGG | 0.336592 | 6.4:+17208685 | None:intergenic |
| CTTACTATGCACTTCTTTCA+TGG | 0.340719 | 6.4:+17205297 | None:intergenic |
| ACAACAATTTAAATCCAAAA+TGG | 0.352815 | 6.4:-17207672 | MS.gene42007:CDS |
| GATGGAAAATTGGAAGAATT+AGG | 0.355883 | 6.4:-17208655 | MS.gene42007:CDS |
| CATTCTGGATTCAAAGAATT+CGG | 0.362170 | 6.4:+17208616 | None:intergenic |
| TTGACCAGCCACCTCTTGTT+TGG | 0.365121 | 6.4:+17209115 | None:intergenic |
| TTTGGGGTGGATAAGGGTAT+TGG | 0.367961 | 6.4:+17204926 | None:intergenic |
| TTTCTCACCTCAGAGTTGAT+TGG | 0.367981 | 6.4:+17206187 | None:intergenic |
| TTGCATTACATCGATTTATC+TGG | 0.374898 | 6.4:-17206781 | MS.gene42007:CDS |
| TTGGGGTGGATAAGGGTATT+GGG | 0.375741 | 6.4:+17204927 | None:intergenic |
| AATGAAAGGAGATGGAAAAT+TGG | 0.379656 | 6.4:-17208665 | MS.gene42007:CDS |
| GCTTAACCTTGACGGTTAGA+AGG | 0.385288 | 6.4:-17207992 | MS.gene42007:CDS |
| CCCATAGGACGGCGTTGTTA+CGG | 0.386213 | 6.4:-17205683 | MS.gene42007:intron |
| AGCATGTAATTTACTTGATC+GGG | 0.388048 | 6.4:-17208820 | MS.gene42007:CDS |
| AAAATTTATGTAGGCTATCA+TGG | 0.398003 | 6.4:-17206323 | MS.gene42007:intron |
| TTCTCTTGTCCGTGTGTCAA+TGG | 0.399081 | 6.4:+17207115 | None:intergenic |
| AATGGCAAACATGTACTTAT+CGG | 0.403352 | 6.4:-17207321 | MS.gene42007:CDS |
| TGTAGGAGTTGAAGGCATAA+TGG | 0.403444 | 6.4:-17206007 | MS.gene42007:CDS |
| TTCTTCGTTATAGGTTCTAA+AGG | 0.405469 | 6.4:-17207028 | MS.gene42007:intron |
| CTAATAAAATGTTTCCTGCT+TGG | 0.407672 | 6.4:-17206270 | MS.gene42007:CDS |
| GGTTAAGCTCCGGCTTGGTT+TGG | 0.413516 | 6.4:+17208007 | None:intergenic |
| TGTCTTAATCTCCAGCAGTT+TGG | 0.414339 | 6.4:-17207640 | MS.gene42007:CDS |
| TCGATGTAATGCAAAGAATC+TGG | 0.423247 | 6.4:+17206790 | None:intergenic |
| TGTGGATCATTATTGTGAAA+AGG | 0.427709 | 6.4:-17206995 | MS.gene42007:CDS |
| CTATGTATTACTTATCATTA+CGG | 0.432076 | 6.4:-17205863 | MS.gene42007:intron |
| ACCAACTATAAGAATCGATA+AGG | 0.436043 | 6.4:+17205615 | None:intergenic |
| CAGGTATTGGATGCTGATAA+TGG | 0.440119 | 6.4:-17205379 | MS.gene42007:CDS |
| TATCTTTCGTTGTTCTCGGT+TGG | 0.441185 | 6.4:-17207892 | MS.gene42007:CDS |
| CAGCATGTAATTTACTTGAT+CGG | 0.441863 | 6.4:-17208821 | MS.gene42007:CDS |
| TTACTATGCACTTCTTTCAT+GGG | 0.442233 | 6.4:+17205298 | None:intergenic |
| TCTTCGTTATAGGTTCTAAA+GGG | 0.443242 | 6.4:-17207027 | MS.gene42007:intron |
| AATAAAATGTTTCCTGCTTG+GGG | 0.447902 | 6.4:-17206268 | MS.gene42007:CDS |
| ATTATATGTCCAGCTTCAAA+TGG | 0.448349 | 6.4:-17206826 | MS.gene42007:intron |
| TCTAAAGGGTCAACTATTTG+TGG | 0.454038 | 6.4:-17207013 | MS.gene42007:CDS |
| ATTCTTGATATCCTTAGAAA+AGG | 0.456825 | 6.4:+17207742 | None:intergenic |
| TTACTTTACTTCCAAACTGC+TGG | 0.462818 | 6.4:+17207629 | None:intergenic |
| TCGATTCTTATAGTTGGTGT+TGG | 0.472872 | 6.4:-17205610 | MS.gene42007:CDS |
| CGAATTCTTTGAATCCAGAA+TGG | 0.475874 | 6.4:-17208615 | MS.gene42007:CDS |
| AACAGTCTCCTCAGCATGAA+TGG | 0.478948 | 6.4:+17207938 | None:intergenic |
| ATGGTTGCGGTAGATTTCAC+TGG | 0.480284 | 6.4:-17206922 | MS.gene42007:intron |
| CTGAGTGATCAAGACTTCCT+AGG | 0.482617 | 6.4:-17208162 | MS.gene42007:CDS |
| CGAACTAAATTTCATGGTTG+CGG | 0.485552 | 6.4:-17206935 | MS.gene42007:CDS |
| GTGTAGGTTGTAGGAGTTGA+AGG | 0.486099 | 6.4:-17206015 | MS.gene42007:intron |
| TCGGTTAAATTCATACCAAA+AGG | 0.492733 | 6.4:-17206758 | MS.gene42007:intron |
| TGCTTTGATTTCAATAGCAA+TGG | 0.495572 | 6.4:-17207339 | MS.gene42007:CDS |
| GACATTGACACAAGATATCA+TGG | 0.496552 | 6.4:-17208378 | MS.gene42007:CDS |
| AATTTGCGCCACTTCTCTCT+TGG | 0.505427 | 6.4:+17207146 | None:intergenic |
| TGATCGGGACATTGCGTCGA+AGG | 0.510329 | 6.4:-17208805 | MS.gene42007:intron |
| GTCAAGGTTAAGCTCCGGCT+TGG | 0.510784 | 6.4:+17208002 | None:intergenic |
| AAGCCGGAGCTTAACCTTGA+CGG | 0.512192 | 6.4:-17208000 | MS.gene42007:CDS |
| ATGGCAAACATGTACTTATC+GGG | 0.518005 | 6.4:-17207320 | MS.gene42007:intron |
| AAATGTTTACAAACCTTGGT+GGG | 0.518875 | 6.4:+17208351 | None:intergenic |
| TCAAAGCACTCAATAAGTAA+TGG | 0.527968 | 6.4:+17207354 | None:intergenic |
| CGCCTCATAAAAGAAATTCA+CGG | 0.528129 | 6.4:+17209067 | None:intergenic |
| CATTACAGGTCCAAATAATG+TGG | 0.528168 | 6.4:+17205942 | None:intergenic |
| TCTTGCTTTAGTGATTTGAA+TGG | 0.529244 | 6.4:-17209140 | MS.gene42007:CDS |
| AAAATGTTTACAAACCTTGG+TGG | 0.535594 | 6.4:+17208350 | None:intergenic |
| AAGTGCAACTTGCCTCTCCT+AGG | 0.543366 | 6.4:+17208145 | None:intergenic |
| CCAACTATAAGAATCGATAA+GGG | 0.543759 | 6.4:+17205616 | None:intergenic |
| CGTCGCTTAAGAAGTTCTAC+TGG | 0.546983 | 6.4:-17205355 | MS.gene42007:CDS |
| AGTGCTGTTATATGATGAAA+CGG | 0.551687 | 6.4:+17205891 | None:intergenic |
| AAACGCTGATTTCAAGAGCA+TGG | 0.551958 | 6.4:-17205587 | MS.gene42007:CDS |
| TTTATTGACTACATATCTAG+TGG | 0.553134 | 6.4:-17206961 | MS.gene42007:CDS |
| TGCAAAGAATCTGGCTTGTG+AGG | 0.553928 | 6.4:+17206799 | None:intergenic |
| ATGTAGGCTATCATGGAGGT+TGG | 0.561867 | 6.4:-17206316 | MS.gene42007:intron |
| TAACCGTCAAGGTTAAGCTC+CGG | 0.564476 | 6.4:+17207997 | None:intergenic |
| TACTATGCACTTCTTTCATG+GGG | 0.565387 | 6.4:+17205299 | None:intergenic |
| TCAGAGTGATCCTATGATTG+TGG | 0.565783 | 6.4:-17208695 | MS.gene42007:intron |
| GACTGTTGCGGCAAGGAGTG+CGG | 0.566725 | 6.4:-17207922 | MS.gene42007:CDS |
| GCGATTGTGCACGCAAGTTG+AGG | 0.567202 | 6.4:-17209033 | MS.gene42007:intron |
| TTGACGGTTAGAAGGAAAAG+AGG | 0.571744 | 6.4:-17207984 | MS.gene42007:CDS |
| TAGGCTATCATGGAGGTTGG+AGG | 0.578214 | 6.4:-17206313 | MS.gene42007:CDS |
| GGAGCCAAACAAGAGGTGGC+TGG | 0.584629 | 6.4:-17209119 | MS.gene42007:CDS |
| GCATATGCAATGAAAGGAGA+TGG | 0.584810 | 6.4:-17208673 | MS.gene42007:CDS |
| ATTGACACACGGACAAGAGA+AGG | 0.588157 | 6.4:-17207113 | MS.gene42007:intron |
| TTTGTCATGCCATTGACACA+CGG | 0.590225 | 6.4:-17207124 | MS.gene42007:CDS |
| AAAGAGGGAATAGAAACGAT+GGG | 0.591292 | 6.4:-17207968 | MS.gene42007:CDS |
| TTTGGAGGAAAGTTACCTGC+GGG | 0.593775 | 6.4:-17206244 | MS.gene42007:CDS |
| TGCTGGAGATTAAGACAAAG+TGG | 0.593909 | 6.4:+17207646 | None:intergenic |
| ATTACATCGATTTATCTGGT+CGG | 0.601030 | 6.4:-17206777 | MS.gene42007:CDS |
| GGCAATTACCATTCATGCTG+AGG | 0.602088 | 6.4:-17207946 | MS.gene42007:CDS |
| TAAGGGTATTGGGAAACAAG+TGG | 0.603176 | 6.4:+17204937 | None:intergenic |
| ATAAAATGTTTCCTGCTTGG+GGG | 0.603588 | 6.4:-17206267 | MS.gene42007:CDS |
| GGCAAGTTGCACTTTATCAG+AGG | 0.610347 | 6.4:-17208136 | MS.gene42007:intron |
| CTGAGGAGACTGTTGCGGCA+AGG | 0.611959 | 6.4:-17207929 | MS.gene42007:CDS |
| AAGCTCTACCAAGAGAGAAG+TGG | 0.613699 | 6.4:-17207154 | MS.gene42007:CDS |
| TCAAGAAACCATAAATGCTG+TGG | 0.616964 | 6.4:-17205656 | MS.gene42007:CDS |
| GAAGCAATAGCTTACACAAG+TGG | 0.619505 | 6.4:+17208550 | None:intergenic |
| TCTCGGTTGGATAACAAAGA+CGG | 0.620614 | 6.4:-17207879 | MS.gene42007:CDS |
| ATATCAAGAATCGTTGAGAG+TGG | 0.622336 | 6.4:-17207730 | MS.gene42007:CDS |
| AGATAGTGACCAAACCAAGC+CGG | 0.622761 | 6.4:-17208016 | MS.gene42007:CDS |
| GAATGGAGCCAAACAAGAGG+TGG | 0.626205 | 6.4:-17209123 | MS.gene42007:CDS |
| AAAAGAGGGAATAGAAACGA+TGG | 0.628984 | 6.4:-17207969 | MS.gene42007:CDS |
| TCATGCTGAGGAGACTGTTG+CGG | 0.635107 | 6.4:-17207934 | MS.gene42007:CDS |
| ATTACAGGTCCAAATAATGT+GGG | 0.639830 | 6.4:+17205943 | None:intergenic |
| CAATGAGATACGTTACCCGC+AGG | 0.641741 | 6.4:+17206229 | None:intergenic |
| TCAAGAATCGTTGAGAGTGG+AGG | 0.644421 | 6.4:-17207727 | MS.gene42007:CDS |
| ATTGTGGCATATGCAATGAA+AGG | 0.656157 | 6.4:-17208679 | MS.gene42007:CDS |
| ATATCATGGTGTTCCCACCA+AGG | 0.656561 | 6.4:-17208364 | MS.gene42007:intron |
| TGATCAAGACTTCCTAGGAG+AGG | 0.663008 | 6.4:-17208157 | MS.gene42007:CDS |
| TTTGAATGGAGCCAAACAAG+AGG | 0.663232 | 6.4:-17209126 | MS.gene42007:CDS |
| TGACGGTTAGAAGGAAAAGA+GGG | 0.665772 | 6.4:-17207983 | MS.gene42007:CDS |
| ATTTGGACCTGTAATGAACA+TGG | 0.666765 | 6.4:-17205935 | MS.gene42007:CDS |
| TGGGAGCCCAATCAACTCTG+AGG | 0.696472 | 6.4:-17206194 | MS.gene42007:intron |
| GTTTGGAGGAAAGTTACCTG+CGG | 0.698546 | 6.4:-17206245 | MS.gene42007:CDS |
| CGCTGATTTCAAGAGCATGG+AGG | 0.715202 | 6.4:-17205584 | MS.gene42007:intron |
| AAGAGGGAATAGAAACGATG+GGG | 0.727845 | 6.4:-17207967 | MS.gene42007:CDS |
| ATTTATGTAGGCTATCATGG+AGG | 0.738507 | 6.4:-17206320 | MS.gene42007:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTCAAGATTATAAAATA+AGG | + | chr6.4:17205093-17205112 | None:intergenic | 10.0% |
| !! | ATAAAAGTCAAAAATTGATT+AGG | + | chr6.4:17209082-17209101 | None:intergenic | 15.0% |
| !! | ATAAATTGTTCTATTAACTA+AGG | - | chr6.4:17207164-17207183 | MS.gene42007:CDS | 15.0% |
| !! | TAATAAAATTTCTTCGTTAT+AGG | - | chr6.4:17207021-17207040 | MS.gene42007:intron | 15.0% |
| !! | TATTGAATAATTAATGTATC+TGG | + | chr6.4:17207954-17207973 | None:intergenic | 15.0% |
| !!! | ATTCATTGGTTATTTTTAAT+TGG | + | chr6.4:17208339-17208358 | None:intergenic | 15.0% |
| !!! | TAAGCAAATATTATTTTTTC+AGG | + | chr6.4:17207979-17207998 | None:intergenic | 15.0% |
| !!! | TTTCTATTTTGAATAACATA+GGG | - | chr6.4:17207678-17207697 | MS.gene42007:CDS | 15.0% |
| !!! | TTTTCTATTTTGAATAACAT+AGG | - | chr6.4:17207677-17207696 | MS.gene42007:CDS | 15.0% |
| !! | AAAATCGATGTACAAAAATT+TGG | + | chr6.4:17207354-17207373 | None:intergenic | 20.0% |
| !! | ACAACAATTTAAATCCAAAA+TGG | - | chr6.4:17206386-17206405 | MS.gene42007:intron | 20.0% |
| !! | ACTATATAAACCATATATGA+TGG | + | chr6.4:17206239-17206258 | None:intergenic | 20.0% |
| !! | CAATCAATTATAATCATTGA+CGG | + | chr6.4:17208282-17208301 | None:intergenic | 20.0% |
| !! | CTATGTATTACTTATCATTA+CGG | - | chr6.4:17208195-17208214 | MS.gene42007:intron | 20.0% |
| !!! | ATTTTTTTTTTCTTGTGTGT+AGG | - | chr6.4:17208027-17208046 | MS.gene42007:intron | 20.0% |
| !!! | GAAATGCTTTATGTTTTTTT+AGG | - | chr6.4:17207890-17207909 | MS.gene42007:CDS | 20.0% |
| !!! | TAAATTTTAGTATGTGGATT+AGG | + | chr6.4:17207723-17207742 | None:intergenic | 20.0% |
| !!! | TAGATTTGTTTTAGTTAGTT+AGG | + | chr6.4:17207581-17207600 | None:intergenic | 20.0% |
| !!! | TCACTATGATAATTTTAGAA+AGG | - | chr6.4:17205785-17205804 | MS.gene42007:intron | 20.0% |
| ! | AAAATTTATGTAGGCTATCA+TGG | - | chr6.4:17207735-17207754 | MS.gene42007:CDS | 25.0% |
| ! | AAATATCATAATTCACTCTC+CGG | + | chr6.4:17208011-17208030 | None:intergenic | 25.0% |
| ! | ACAAACTATAGCTCAAAAAT+AGG | - | chr6.4:17207535-17207554 | MS.gene42007:intron | 25.0% |
| ! | ACCTGAAAGAAAACAAAATA+AGG | + | chr6.4:17205649-17205668 | None:intergenic | 25.0% |
| ! | AGGTTTATTATTACAGGTAT+TGG | - | chr6.4:17208666-17208685 | MS.gene42007:CDS | 25.0% |
| ! | ATATGCATTCTCATATGTAT+AGG | + | chr6.4:17205286-17205305 | None:intergenic | 25.0% |
| ! | ATCAATGAACAAAATTTGCA+GGG | + | chr6.4:17206982-17207001 | None:intergenic | 25.0% |
| ! | ATCGGGTAATGTAATATTAA+TGG | - | chr6.4:17206755-17206774 | MS.gene42007:intron | 25.0% |
| ! | ATGTAACATTATATTCGTTC+AGG | + | chr6.4:17206627-17206646 | None:intergenic | 25.0% |
| ! | ATTCTTGATATCCTTAGAAA+AGG | + | chr6.4:17206319-17206338 | None:intergenic | 25.0% |
| ! | CAAAAAATGTTTACAAACCT+TGG | + | chr6.4:17205714-17205733 | None:intergenic | 25.0% |
| ! | CCACATACTAAAATTTATGT+AGG | - | chr6.4:17207726-17207745 | MS.gene42007:CDS | 25.0% |
| ! | CCTGAAAGAAAACAAAATAA+GGG | + | chr6.4:17205648-17205667 | None:intergenic | 25.0% |
| ! | CTTGTATTAGATTATTCACA+AGG | - | chr6.4:17207453-17207472 | MS.gene42007:intron | 25.0% |
| ! | GACAATGCATAATATATGTA+AGG | + | chr6.4:17208946-17208965 | None:intergenic | 25.0% |
| ! | GTACTAAGGTTTATTATTAC+AGG | - | chr6.4:17208660-17208679 | MS.gene42007:CDS | 25.0% |
| ! | TAATAAAATGTTTCCTGCTT+GGG | - | chr6.4:17207789-17207808 | MS.gene42007:intron | 25.0% |
| ! | TACAACTTAAGATGTATTCA+TGG | - | chr6.4:17205048-17205067 | MS.gene42007:intron | 25.0% |
| ! | TATTTGCTTATATATGAGAC+CGG | - | chr6.4:17207989-17208008 | MS.gene42007:CDS | 25.0% |
| ! | TTAAATTTCTTTCACTATGC+AGG | - | chr6.4:17206676-17206695 | MS.gene42007:intron | 25.0% |
| !! | TTTATTGACTACATATCTAG+TGG | - | chr6.4:17207097-17207116 | MS.gene42007:intron | 25.0% |
| !!! | ACTATTTTCAAGCTTAAAGT+TGG | - | chr6.4:17208822-17208841 | MS.gene42007:CDS | 25.0% |
| !!! | ATAACTTCAGTCTTTGAAAT+AGG | + | chr6.4:17206364-17206383 | None:intergenic | 25.0% |
| !!! | CCTACATAAATTTTAGTATG+TGG | + | chr6.4:17207729-17207748 | None:intergenic | 25.0% |
| !!! | CGATTTTTCAAGATTTTGTT+GGG | - | chr6.4:17207367-17207386 | MS.gene42007:intron | 25.0% |
| !!! | CTAATTTTTTCTATCCATTC+TGG | + | chr6.4:17205460-17205479 | None:intergenic | 25.0% |
| !!! | CTCATTGTTTTAATCTGAAT+GGG | - | chr6.4:17207845-17207864 | MS.gene42007:intron | 25.0% |
| !!! | GATTTTTCAAGATTTTGTTG+GGG | - | chr6.4:17207368-17207387 | MS.gene42007:intron | 25.0% |
| !!! | TCGATTTTTCAAGATTTTGT+TGG | - | chr6.4:17207366-17207385 | MS.gene42007:intron | 25.0% |
| !!! | TCTCATTGTTTTAATCTGAA+TGG | - | chr6.4:17207844-17207863 | MS.gene42007:intron | 25.0% |
| !!! | TTATTTTTAATTGGTATGCG+CGG | + | chr6.4:17208330-17208349 | None:intergenic | 25.0% |
| !!! | TTTAGAAAGGTGTAATTTTG+TGG | - | chr6.4:17205798-17205817 | MS.gene42007:intron | 25.0% |
| !!! | TTTTTTTTATGTCAACCATC+CGG | - | chr6.4:17206503-17206522 | MS.gene42007:intron | 25.0% |
| AAAATGTTTACAAACCTTGG+TGG | + | chr6.4:17205711-17205730 | None:intergenic | 30.0% | |
| AAATGTTTACAAACCTTGGT+GGG | + | chr6.4:17205710-17205729 | None:intergenic | 30.0% | |
| AATAAAATGTTTCCTGCTTG+GGG | - | chr6.4:17207790-17207809 | MS.gene42007:intron | 30.0% | |
| AATGAAAGGAGATGGAAAAT+TGG | - | chr6.4:17205393-17205412 | MS.gene42007:intron | 30.0% | |
| AATGGCAAACATGTACTTAT+CGG | - | chr6.4:17206737-17206756 | MS.gene42007:intron | 30.0% | |
| ACATTATCTTTCGTTGTTCT+CGG | - | chr6.4:17206162-17206181 | MS.gene42007:intron | 30.0% | |
| ACCAACTATAAGAATCGATA+AGG | + | chr6.4:17208446-17208465 | None:intergenic | 30.0% | |
| AGCATGTAATTTACTTGATC+GGG | - | chr6.4:17205238-17205257 | MS.gene42007:intron | 30.0% | |
| ATCCAATTCGTTAGAACAAA+AGG | + | chr6.4:17205174-17205193 | None:intergenic | 30.0% | |
| ATTACAGGTCCAAATAATGT+GGG | + | chr6.4:17208118-17208137 | None:intergenic | 30.0% | |
| ATTATATGTCCAGCTTCAAA+TGG | - | chr6.4:17207232-17207251 | MS.gene42007:intron | 30.0% | |
| CAGCATGTAATTTACTTGAT+CGG | - | chr6.4:17205237-17205256 | MS.gene42007:intron | 30.0% | |
| CATTCTGGATTCAAAGAATT+CGG | + | chr6.4:17205445-17205464 | None:intergenic | 30.0% | |
| CCAACTATAAGAATCGATAA+GGG | + | chr6.4:17208445-17208464 | None:intergenic | 30.0% | |
| CTAATAAAATGTTTCCTGCT+TGG | - | chr6.4:17207788-17207807 | MS.gene42007:intron | 30.0% | |
| GAACAAAAGGCGAAAAAAAT+AGG | + | chr6.4:17205161-17205180 | None:intergenic | 30.0% | |
| GAAGATCATGAACAATTCAT+TGG | + | chr6.4:17208353-17208372 | None:intergenic | 30.0% | |
| GAGAAATGTTCTTAGTACTA+AGG | - | chr6.4:17208646-17208665 | MS.gene42007:CDS | 30.0% | |
| GATCAATGAACAAAATTTGC+AGG | + | chr6.4:17206983-17207002 | None:intergenic | 30.0% | |
| GATGGAAAATTGGAAGAATT+AGG | - | chr6.4:17205403-17205422 | MS.gene42007:intron | 30.0% | |
| GATTATAGACTTTGTGACAT+TGG | - | chr6.4:17205987-17206006 | MS.gene42007:CDS | 30.0% | |
| TCGGTTAAATTCATACCAAA+AGG | - | chr6.4:17207300-17207319 | MS.gene42007:intron | 30.0% | |
| TCTTGCTTTAGTGATTTGAA+TGG | - | chr6.4:17204918-17204937 | MS.gene42007:CDS | 30.0% | |
| TGCAACAGAAAAAGAAACTT+AGG | + | chr6.4:17208516-17208535 | None:intergenic | 30.0% | |
| TGGATTCGAACTAAATTTCA+TGG | - | chr6.4:17207117-17207136 | MS.gene42007:CDS | 30.0% | |
| TGTAAAGCCTAAAGAAGTTT+AGG | + | chr6.4:17206794-17206813 | None:intergenic | 30.0% | |
| TGTGGATCATTATTGTGAAA+AGG | - | chr6.4:17207063-17207082 | MS.gene42007:intron | 30.0% | |
| TGTTACGTAATGACTTGAAA+CGG | - | chr6.4:17205305-17205324 | MS.gene42007:CDS | 30.0% | |
| TGTTTAGCCTAAACTTCTTT+AGG | - | chr6.4:17206784-17206803 | MS.gene42007:CDS | 30.0% | |
| TTACTATGCACTTCTTTCAT+GGG | + | chr6.4:17208763-17208782 | None:intergenic | 30.0% | |
| TTTCCTTTCAAGAATTTAGC+AGG | + | chr6.4:17205824-17205843 | None:intergenic | 30.0% | |
| ! | AGTGCTGTTATATGATGAAA+CGG | + | chr6.4:17208170-17208189 | None:intergenic | 30.0% |
| ! | TCAAAGCACTCAATAAGTAA+TGG | + | chr6.4:17206707-17206726 | None:intergenic | 30.0% |
| ! | TGCTTTGATTTCAATAGCAA+TGG | - | chr6.4:17206719-17206738 | MS.gene42007:intron | 30.0% |
| ! | TTCTTCGTTATAGGTTCTAA+AGG | - | chr6.4:17207030-17207049 | MS.gene42007:intron | 30.0% |
| !! | ATTACATCGATTTATCTGGT+CGG | - | chr6.4:17207281-17207300 | MS.gene42007:intron | 30.0% |
| !! | CAATTATATACATTTTGGGG+TGG | + | chr6.4:17209148-17209167 | None:intergenic | 30.0% |
| !! | TCTCATGTTTTTGTGTACTA+TGG | - | chr6.4:17206014-17206033 | MS.gene42007:intron | 30.0% |
| !! | TCTTCGTTATAGGTTCTAAA+GGG | - | chr6.4:17207031-17207050 | MS.gene42007:intron | 30.0% |
| !! | TTGCATTACATCGATTTATC+TGG | - | chr6.4:17207277-17207296 | MS.gene42007:intron | 30.0% |
| !!! | CCCTTATTTTGTTTTCTTTC+AGG | - | chr6.4:17205645-17205664 | MS.gene42007:CDS | 30.0% |
| !!! | GTCATCTTGTTTTTTCTTGT+AGG | - | chr6.4:17206291-17206310 | MS.gene42007:CDS | 30.0% |
| AAAAGAGGGAATAGAAACGA+TGG | - | chr6.4:17206089-17206108 | MS.gene42007:intron | 35.0% | |
| AAAGAGGGAATAGAAACGAT+GGG | - | chr6.4:17206090-17206109 | MS.gene42007:intron | 35.0% | |
| AATGAACATGGCTGCAAAAA+TGG | - | chr6.4:17208135-17208154 | MS.gene42007:intron | 35.0% | |
| ATAAAATGTTTCCTGCTTGG+GGG | - | chr6.4:17207791-17207810 | MS.gene42007:intron | 35.0% | |
| ATACCAAGCTCCATCATATA+TGG | - | chr6.4:17206226-17206245 | MS.gene42007:CDS | 35.0% | |
| ATATCAAGAATCGTTGAGAG+TGG | - | chr6.4:17206328-17206347 | MS.gene42007:intron | 35.0% | |
| ATGGCAAACATGTACTTATC+GGG | - | chr6.4:17206738-17206757 | MS.gene42007:intron | 35.0% | |
| ATTGCATATGCCACAATCAT+AGG | + | chr6.4:17205376-17205395 | None:intergenic | 35.0% | |
| ATTGTGGCATATGCAATGAA+AGG | - | chr6.4:17205379-17205398 | MS.gene42007:CDS | 35.0% | |
| ATTTATGTAGGCTATCATGG+AGG | - | chr6.4:17207738-17207757 | MS.gene42007:CDS | 35.0% | |
| ATTTGGACCTGTAATGAACA+TGG | - | chr6.4:17208123-17208142 | MS.gene42007:intron | 35.0% | |
| CAGAAAAAGAAACTTAGGCA+AGG | + | chr6.4:17208511-17208530 | None:intergenic | 35.0% | |
| CATTACAGGTCCAAATAATG+TGG | + | chr6.4:17208119-17208138 | None:intergenic | 35.0% | |
| CGAACTAAATTTCATGGTTG+CGG | - | chr6.4:17207123-17207142 | MS.gene42007:CDS | 35.0% | |
| CGAATTCTTTGAATCCAGAA+TGG | - | chr6.4:17205443-17205462 | MS.gene42007:intron | 35.0% | |
| CGCCTCATAAAAGAAATTCA+CGG | + | chr6.4:17204994-17205013 | None:intergenic | 35.0% | |
| CTAAGAACATTTCTCGAATC+AGG | + | chr6.4:17208641-17208660 | None:intergenic | 35.0% | |
| CTATATGGACCCACATTATT+TGG | - | chr6.4:17208106-17208125 | MS.gene42007:intron | 35.0% | |
| CTTACTATGCACTTCTTTCA+TGG | + | chr6.4:17208764-17208783 | None:intergenic | 35.0% | |
| GACATTGACACAAGATATCA+TGG | - | chr6.4:17205680-17205699 | MS.gene42007:intron | 35.0% | |
| GATGCACAATTGTAACATCA+AGG | - | chr6.4:17206835-17206854 | MS.gene42007:intron | 35.0% | |
| GTAAGCTTGATACTTGTCAA+TGG | - | chr6.4:17207322-17207341 | MS.gene42007:CDS | 35.0% | |
| TACTATGCACTTCTTTCATG+GGG | + | chr6.4:17208762-17208781 | None:intergenic | 35.0% | |
| TCAAGAAACCATAAATGCTG+TGG | - | chr6.4:17208402-17208421 | MS.gene42007:intron | 35.0% | |
| TCGATGTAATGCAAAGAATC+TGG | + | chr6.4:17207271-17207290 | None:intergenic | 35.0% | |
| TCTAAAGGGTCAACTATTTG+TGG | - | chr6.4:17207045-17207064 | MS.gene42007:intron | 35.0% | |
| TGATTCAAACAGTACTTGCA+GGG | + | chr6.4:17205758-17205777 | None:intergenic | 35.0% | |
| TGCTTTAACCACAGCATTTA+TGG | + | chr6.4:17208413-17208432 | None:intergenic | 35.0% | |
| TTACGAAGTGTGAGTCTATA+TGG | - | chr6.4:17208091-17208110 | MS.gene42007:intron | 35.0% | |
| TTACTTTACTTCCAAACTGC+TGG | + | chr6.4:17206432-17206451 | None:intergenic | 35.0% | |
| TTGATTCAAACAGTACTTGC+AGG | + | chr6.4:17205759-17205778 | None:intergenic | 35.0% | |
| ! | AAACCATATATGATGGAGCT+TGG | + | chr6.4:17206232-17206251 | None:intergenic | 35.0% |
| ! | AATTTCTTTTATGAGGCGCA+TGG | - | chr6.4:17204996-17205015 | MS.gene42007:CDS | 35.0% |
| ! | ATCAAGGTTTTCTTGTCAAC+AGG | - | chr6.4:17206851-17206870 | MS.gene42007:intron | 35.0% |
| ! | ATTTCTTTTATGAGGCGCAT+GGG | - | chr6.4:17204997-17205016 | MS.gene42007:CDS | 35.0% |
| ! | CAAGTATCAAGCTTACCTTT+TGG | + | chr6.4:17207318-17207337 | None:intergenic | 35.0% |
| ! | TCGATTCTTATAGTTGGTGT+TGG | - | chr6.4:17208448-17208467 | MS.gene42007:intron | 35.0% |
| ! | TCTTGTAGGATCCTTTTCTA+AGG | - | chr6.4:17206305-17206324 | MS.gene42007:CDS | 35.0% |
| ! | TGAACTTAACTCAGTTGGTA+GGG | + | chr6.4:17208968-17208987 | None:intergenic | 35.0% |
| ! | TGCCGTGAATTTCTTTTATG+AGG | - | chr6.4:17204989-17205008 | MS.gene42007:CDS | 35.0% |
| ! | TTCTGTTGTACAAGCTCTTT+TGG | - | chr6.4:17209048-17209067 | MS.gene42007:CDS | 35.0% |
| ! | TTTTCTTGTGTGTAGGTTGT+AGG | - | chr6.4:17208034-17208053 | MS.gene42007:intron | 35.0% |
| !! | CCCTTATCGATTCTTATAGT+TGG | - | chr6.4:17208442-17208461 | MS.gene42007:intron | 35.0% |
| !! | TTCATGGTATCTTTAGAGCT+TGG | - | chr6.4:17205064-17205083 | MS.gene42007:intron | 35.0% |
| !!! | ATACATTTTGGGGTGGATAA+GGG | + | chr6.4:17209141-17209160 | None:intergenic | 35.0% |
| !!! | TATACATTTTGGGGTGGATA+AGG | + | chr6.4:17209142-17209161 | None:intergenic | 35.0% |
| AAGAGGGAATAGAAACGATG+GGG | - | chr6.4:17206091-17206110 | MS.gene42007:intron | 40.0% | |
| AGACATGTTGTGCACAAAGA+TGG | + | chr6.4:17206460-17206479 | None:intergenic | 40.0% | |
| ATGATCTTCTTCCCATAGGA+CGG | - | chr6.4:17208364-17208383 | MS.gene42007:intron | 40.0% | |
| CCACCTGTCAAAACACAATA+GGG | + | chr6.4:17209022-17209041 | None:intergenic | 40.0% | |
| GAAGCAATAGCTTACACAAG+TGG | + | chr6.4:17205511-17205530 | None:intergenic | 40.0% | |
| GCATATGCAATGAAAGGAGA+TGG | - | chr6.4:17205385-17205404 | MS.gene42007:intron | 40.0% | |
| GGCTGAAATCTGGATTACTA+GGG | + | chr6.4:17206546-17206565 | None:intergenic | 40.0% | |
| GTGAACTTAACTCAGTTGGT+AGG | + | chr6.4:17208969-17208988 | None:intergenic | 40.0% | |
| GTTCATGATCTTCTTCCCAT+AGG | - | chr6.4:17208360-17208379 | MS.gene42007:intron | 40.0% | |
| TAAGGTCTAAGTTTCAACCC+CGG | + | chr6.4:17208928-17208947 | None:intergenic | 40.0% | |
| TAATCCAGATTTCAGCCGAA+AGG | - | chr6.4:17206549-17206568 | MS.gene42007:intron | 40.0% | |
| TATCTTTCGTTGTTCTCGGT+TGG | - | chr6.4:17206166-17206185 | MS.gene42007:intron | 40.0% | |
| TCAGAGTGATCCTATGATTG+TGG | - | chr6.4:17205363-17205382 | MS.gene42007:CDS | 40.0% | |
| TCCACCTGTCAAAACACAAT+AGG | + | chr6.4:17209023-17209042 | None:intergenic | 40.0% | |
| TCTCGGTTGGATAACAAAGA+CGG | - | chr6.4:17206179-17206198 | MS.gene42007:intron | 40.0% | |
| TGACGGTTAGAAGGAAAAGA+GGG | - | chr6.4:17206075-17206094 | MS.gene42007:intron | 40.0% | |
| TGAGCAAGTAACTGCACTAT+AGG | + | chr6.4:17207494-17207513 | None:intergenic | 40.0% | |
| TGCTGGAGATTAAGACAAAG+TGG | + | chr6.4:17206415-17206434 | None:intergenic | 40.0% | |
| TGGCCTGCTAAATTCTTGAA+AGG | - | chr6.4:17205818-17205837 | MS.gene42007:intron | 40.0% | |
| TGTCTTAATCTCCAGCAGTT+TGG | - | chr6.4:17206418-17206437 | MS.gene42007:intron | 40.0% | |
| TTGACGGTTAGAAGGAAAAG+AGG | - | chr6.4:17206074-17206093 | MS.gene42007:intron | 40.0% | |
| TTTCTGTTGCACATAGACAC+TGG | - | chr6.4:17208525-17208544 | MS.gene42007:intron | 40.0% | |
| TTTGAATGGAGCCAAACAAG+AGG | - | chr6.4:17204932-17204951 | MS.gene42007:CDS | 40.0% | |
| TTTGCAGCCATGTTCATTAC+AGG | + | chr6.4:17208133-17208152 | None:intergenic | 40.0% | |
| TTTGTCATGCCATTGACACA+CGG | - | chr6.4:17206934-17206953 | MS.gene42007:CDS | 40.0% | |
| ! | AGACAAAGTGGTCTCCATTT+TGG | + | chr6.4:17206403-17206422 | None:intergenic | 40.0% |
| ! | CACTCAGATTTATTGACTGC+AGG | + | chr6.4:17205883-17205902 | None:intergenic | 40.0% |
| ! | CGCCTTTTGTTCTAACGAAT+TGG | - | chr6.4:17205169-17205188 | MS.gene42007:intron | 40.0% |
| ! | TCTCTTGGTAGAGCTTTTCA+AGG | + | chr6.4:17206900-17206919 | None:intergenic | 40.0% |
| ! | TCTTTTCCTTCTAACCGTCA+AGG | + | chr6.4:17206075-17206094 | None:intergenic | 40.0% |
| ! | TGTAGGAGTTGAAGGCATAA+TGG | - | chr6.4:17208051-17208070 | MS.gene42007:intron | 40.0% |
| ! | TGTTGTACAAGCTCTTTTGG+AGG | - | chr6.4:17209051-17209070 | MS.gene42007:CDS | 40.0% |
| ! | TTCTCACCTCAGAGTTGATT+GGG | + | chr6.4:17207873-17207892 | None:intergenic | 40.0% |
| ! | TTTCTCACCTCAGAGTTGAT+TGG | + | chr6.4:17207874-17207893 | None:intergenic | 40.0% |
| !! | AAACGCTGATTTCAAGAGCA+TGG | - | chr6.4:17208471-17208490 | MS.gene42007:intron | 40.0% |
| !! | CAGGTATTGGATGCTGATAA+TGG | - | chr6.4:17208679-17208698 | MS.gene42007:CDS | 40.0% |
| !! | TAAGGGTATTGGGAAACAAG+TGG | + | chr6.4:17209124-17209143 | None:intergenic | 40.0% |
| !!! | GAACCCTATTGTGTTTTGAC+AGG | - | chr6.4:17209016-17209035 | MS.gene42007:intron | 40.0% |
| AACAGTCTCCTCAGCATGAA+TGG | + | chr6.4:17206123-17206142 | None:intergenic | 45.0% | |
| AAGCTCTACCAAGAGAGAAG+TGG | - | chr6.4:17206904-17206923 | MS.gene42007:intron | 45.0% | |
| AATTTGCGCCACTTCTCTCT+TGG | + | chr6.4:17206915-17206934 | None:intergenic | 45.0% | |
| AGATAGTGACCAAACCAAGC+CGG | - | chr6.4:17206042-17206061 | MS.gene42007:intron | 45.0% | |
| ATATCATGGTGTTCCCACCA+AGG | - | chr6.4:17205694-17205713 | MS.gene42007:intron | 45.0% | |
| ATGGTTGCGGTAGATTTCAC+TGG | - | chr6.4:17207136-17207155 | MS.gene42007:CDS | 45.0% | |
| ATGTAGGCTATCATGGAGGT+TGG | - | chr6.4:17207742-17207761 | MS.gene42007:CDS | 45.0% | |
| ATGTCAACCATCCGGTTTCT+AGG | - | chr6.4:17206511-17206530 | MS.gene42007:intron | 45.0% | |
| ATTGACACACGGACAAGAGA+AGG | - | chr6.4:17206945-17206964 | MS.gene42007:CDS | 45.0% | |
| CACGGCATCATTGTTCTTCT+CGG | + | chr6.4:17204976-17204995 | None:intergenic | 45.0% | |
| CCAACTGAGTTAAGTTCACG+AGG | - | chr6.4:17208970-17208989 | MS.gene42007:intron | 45.0% | |
| CCTCGTGAACTTAACTCAGT+TGG | + | chr6.4:17208973-17208992 | None:intergenic | 45.0% | |
| CGGCTGAAATCTGGATTACT+AGG | + | chr6.4:17206547-17206566 | None:intergenic | 45.0% | |
| CGTCGCTTAAGAAGTTCTAC+TGG | - | chr6.4:17208703-17208722 | MS.gene42007:intron | 45.0% | |
| CTGAGTGATCAAGACTTCCT+AGG | - | chr6.4:17205896-17205915 | MS.gene42007:CDS | 45.0% | |
| CTTACCTTTCGGCTGAAATC+TGG | + | chr6.4:17206556-17206575 | None:intergenic | 45.0% | |
| GCCAGGCTTTACTTACCTTT+CGG | + | chr6.4:17206567-17206586 | None:intergenic | 45.0% | |
| GCTTAACCTTGACGGTTAGA+AGG | - | chr6.4:17206066-17206085 | MS.gene42007:intron | 45.0% | |
| GGCAAGTTGCACTTTATCAG+AGG | - | chr6.4:17205922-17205941 | MS.gene42007:CDS | 45.0% | |
| GGCAATTACCATTCATGCTG+AGG | - | chr6.4:17206112-17206131 | MS.gene42007:intron | 45.0% | |
| GTACTTGCAGGGATAACTCA+TGG | + | chr6.4:17205747-17205766 | None:intergenic | 45.0% | |
| GTGTAGGTTGTAGGAGTTGA+AGG | - | chr6.4:17208043-17208062 | MS.gene42007:intron | 45.0% | |
| GTTTGGAGGAAAGTTACCTG+CGG | - | chr6.4:17207813-17207832 | MS.gene42007:intron | 45.0% | |
| TAAACATGCCAGTGTCGTGT+CGG | - | chr6.4:17208596-17208615 | MS.gene42007:CDS | 45.0% | |
| TAACCGTCAAGGTTAAGCTC+CGG | + | chr6.4:17206064-17206083 | None:intergenic | 45.0% | |
| TCAAGAATCGTTGAGAGTGG+AGG | - | chr6.4:17206331-17206350 | MS.gene42007:intron | 45.0% | |
| TGATCAAGACTTCCTAGGAG+AGG | - | chr6.4:17205901-17205920 | MS.gene42007:CDS | 45.0% | |
| TGTCAACCATCCGGTTTCTA+GGG | - | chr6.4:17206512-17206531 | MS.gene42007:intron | 45.0% | |
| TTCCGAGTGGGAACAATTCT+TGG | + | chr6.4:17206589-17206608 | None:intergenic | 45.0% | |
| TTCTCTTGTCCGTGTGTCAA+TGG | + | chr6.4:17206946-17206965 | None:intergenic | 45.0% | |
| TTTGGAGGAAAGTTACCTGC+GGG | - | chr6.4:17207814-17207833 | MS.gene42007:intron | 45.0% | |
| ! | TGAGGATCTCCATTTGAAGC+TGG | + | chr6.4:17207244-17207263 | None:intergenic | 45.0% |
| ! | TGCAAAGAATCTGGCTTGTG+AGG | + | chr6.4:17207262-17207281 | None:intergenic | 45.0% |
| ! | TTTGGGGTGGATAAGGGTAT+TGG | + | chr6.4:17209135-17209154 | None:intergenic | 45.0% |
| !! | TTGGGGTGGATAAGGGTATT+GGG | + | chr6.4:17209134-17209153 | None:intergenic | 45.0% |
| !!! | CCCTATTGTGTTTTGACAGG+TGG | - | chr6.4:17209019-17209038 | MS.gene42007:intron | 45.0% |
| !! | AAAAATATTAATAAAAAAGT+TGG | + | chr6.4:17205334-17205353 | None:intergenic | 5.0% |
| !!! | TTTGTTATATATATATATAT+AGG | + | chr6.4:17205617-17205636 | None:intergenic | 5.0% |
| AAGCCGGAGCTTAACCTTGA+CGG | - | chr6.4:17206058-17206077 | MS.gene42007:intron | 50.0% | |
| AAGTGCAACTTGCCTCTCCT+AGG | + | chr6.4:17205916-17205935 | None:intergenic | 50.0% | |
| ACCTGAGTTCGATTCCGAGT+GGG | + | chr6.4:17206601-17206620 | None:intergenic | 50.0% | |
| AGTGGGAACAATTCTTGGCC+AGG | + | chr6.4:17206584-17206603 | None:intergenic | 50.0% | |
| ATGTTTCCTGCTTGGGGGTT+TGG | - | chr6.4:17207796-17207815 | MS.gene42007:intron | 50.0% | |
| CAATGAGATACGTTACCCGC+AGG | + | chr6.4:17207832-17207851 | None:intergenic | 50.0% | |
| GAATGGAGCCAAACAAGAGG+TGG | - | chr6.4:17204935-17204954 | MS.gene42007:CDS | 50.0% | |
| GCCGAAAGGTAAGTAAAGCC+TGG | - | chr6.4:17206563-17206582 | MS.gene42007:intron | 50.0% | |
| GGCCAAGAATTGTTCCCACT+CGG | - | chr6.4:17206584-17206603 | MS.gene42007:intron | 50.0% | |
| TAGGCTATCATGGAGGTTGG+AGG | - | chr6.4:17207745-17207764 | MS.gene42007:CDS | 50.0% | |
| TCATGCTGAGGAGACTGTTG+CGG | - | chr6.4:17206124-17206143 | MS.gene42007:intron | 50.0% | |
| TTGACCAGCCACCTCTTGTT+TGG | + | chr6.4:17204946-17204965 | None:intergenic | 50.0% | |
| ! | GTCAACCATCCGGTTTCTAG+GGG | - | chr6.4:17206513-17206532 | MS.gene42007:intron | 50.0% |
| ! | GTTTTCCCCTAGAAACCGGA+TGG | + | chr6.4:17206521-17206540 | None:intergenic | 50.0% |
| !! | CGCTGATTTCAAGAGCATGG+AGG | - | chr6.4:17208474-17208493 | MS.gene42007:intron | 50.0% |
| !! | GGTCGTTTTCCCCTAGAAAC+CGG | + | chr6.4:17206525-17206544 | None:intergenic | 50.0% |
| CCCATAGGACGGCGTTGTTA+CGG | - | chr6.4:17208375-17208394 | MS.gene42007:CDS | 55.0% | |
| CCGTAACAACGCCGTCCTAT+GGG | + | chr6.4:17208378-17208397 | None:intergenic | 55.0% | |
| GACCTGAGTTCGATTCCGAG+TGG | + | chr6.4:17206602-17206621 | None:intergenic | 55.0% | |
| GCGATTGTGCACGCAAGTTG+AGG | - | chr6.4:17205025-17205044 | MS.gene42007:intron | 55.0% | |
| GTCAAGGTTAAGCTCCGGCT+TGG | + | chr6.4:17206059-17206078 | None:intergenic | 55.0% | |
| TCCCACTCGGAATCGAACTC+AGG | - | chr6.4:17206597-17206616 | MS.gene42007:intron | 55.0% | |
| TCCGTAACAACGCCGTCCTA+TGG | + | chr6.4:17208379-17208398 | None:intergenic | 55.0% | |
| TGATCGGGACATTGCGTCGA+AGG | - | chr6.4:17205253-17205272 | MS.gene42007:intron | 55.0% | |
| TGGGAGCCCAATCAACTCTG+AGG | - | chr6.4:17207864-17207883 | MS.gene42007:intron | 55.0% | |
| TTTCCTCCAAACCCCCAAGC+AGG | + | chr6.4:17207805-17207824 | None:intergenic | 55.0% | |
| TTTCCTGCTTGGGGGTTTGG+AGG | - | chr6.4:17207799-17207818 | MS.gene42007:intron | 55.0% | |
| ! | TCGTGTCGGTGTCTGACACT+AGG | - | chr6.4:17208610-17208629 | MS.gene42007:CDS | 55.0% |
| !! | GGTTAAGCTCCGGCTTGGTT+TGG | + | chr6.4:17206054-17206073 | None:intergenic | 55.0% |
| CTGAGGAGACTGTTGCGGCA+AGG | - | chr6.4:17206129-17206148 | MS.gene42007:intron | 60.0% | |
| GACTGTTGCGGCAAGGAGTG+CGG | - | chr6.4:17206136-17206155 | MS.gene42007:intron | 60.0% | |
| GGAGCCAAACAAGAGGTGGC+TGG | - | chr6.4:17204939-17204958 | MS.gene42007:CDS | 60.0% | |
| GTCAGACACCGACACGACAC+TGG | + | chr6.4:17208607-17208626 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 17204912 | 17209168 | 17204912 | ID=MS.gene42007 |
| chr6.4 | mRNA | 17204912 | 17209168 | 17204912 | ID=MS.gene42007.t1;Parent=MS.gene42007 |
| chr6.4 | exon | 17209034 | 17209168 | 17209034 | ID=MS.gene42007.t1.exon1;Parent=MS.gene42007.t1 |
| chr6.4 | CDS | 17209034 | 17209168 | 17209034 | ID=cds.MS.gene42007.t1;Parent=MS.gene42007.t1 |
| chr6.4 | exon | 17208806 | 17208853 | 17208806 | ID=MS.gene42007.t1.exon2;Parent=MS.gene42007.t1 |
| chr6.4 | CDS | 17208806 | 17208853 | 17208806 | ID=cds.MS.gene42007.t1;Parent=MS.gene42007.t1 |
| chr6.4 | exon | 17208565 | 17208713 | 17208565 | ID=MS.gene42007.t1.exon3;Parent=MS.gene42007.t1 |
| chr6.4 | CDS | 17208565 | 17208713 | 17208565 | ID=cds.MS.gene42007.t1;Parent=MS.gene42007.t1 |
| chr6.4 | exon | 17208365 | 17208413 | 17208365 | ID=MS.gene42007.t1.exon4;Parent=MS.gene42007.t1 |
| chr6.4 | CDS | 17208365 | 17208413 | 17208365 | ID=cds.MS.gene42007.t1;Parent=MS.gene42007.t1 |
| chr6.4 | exon | 17208137 | 17208193 | 17208137 | ID=MS.gene42007.t1.exon5;Parent=MS.gene42007.t1 |
| chr6.4 | CDS | 17208137 | 17208193 | 17208137 | ID=cds.MS.gene42007.t1;Parent=MS.gene42007.t1 |
| chr6.4 | exon | 17207866 | 17208036 | 17207866 | ID=MS.gene42007.t1.exon6;Parent=MS.gene42007.t1 |
| chr6.4 | CDS | 17207866 | 17208036 | 17207866 | ID=cds.MS.gene42007.t1;Parent=MS.gene42007.t1 |
| chr6.4 | exon | 17207633 | 17207767 | 17207633 | ID=MS.gene42007.t1.exon7;Parent=MS.gene42007.t1 |
| chr6.4 | CDS | 17207633 | 17207767 | 17207633 | ID=cds.MS.gene42007.t1;Parent=MS.gene42007.t1 |
| chr6.4 | exon | 17207321 | 17207382 | 17207321 | ID=MS.gene42007.t1.exon8;Parent=MS.gene42007.t1 |
| chr6.4 | CDS | 17207321 | 17207382 | 17207321 | ID=cds.MS.gene42007.t1;Parent=MS.gene42007.t1 |
| chr6.4 | exon | 17207114 | 17207207 | 17207114 | ID=MS.gene42007.t1.exon9;Parent=MS.gene42007.t1 |
| chr6.4 | CDS | 17207114 | 17207207 | 17207114 | ID=cds.MS.gene42007.t1;Parent=MS.gene42007.t1 |
| chr6.4 | exon | 17206923 | 17207037 | 17206923 | ID=MS.gene42007.t1.exon10;Parent=MS.gene42007.t1 |
| chr6.4 | CDS | 17206923 | 17207037 | 17206923 | ID=cds.MS.gene42007.t1;Parent=MS.gene42007.t1 |
| chr6.4 | exon | 17206759 | 17206835 | 17206759 | ID=MS.gene42007.t1.exon11;Parent=MS.gene42007.t1 |
| chr6.4 | CDS | 17206759 | 17206835 | 17206759 | ID=cds.MS.gene42007.t1;Parent=MS.gene42007.t1 |
| chr6.4 | exon | 17206195 | 17206332 | 17206195 | ID=MS.gene42007.t1.exon12;Parent=MS.gene42007.t1 |
| chr6.4 | CDS | 17206195 | 17206332 | 17206195 | ID=cds.MS.gene42007.t1;Parent=MS.gene42007.t1 |
| chr6.4 | exon | 17205864 | 17206031 | 17205864 | ID=MS.gene42007.t1.exon13;Parent=MS.gene42007.t1 |
| chr6.4 | CDS | 17205864 | 17206031 | 17205864 | ID=cds.MS.gene42007.t1;Parent=MS.gene42007.t1 |
| chr6.4 | exon | 17205585 | 17205698 | 17205585 | ID=MS.gene42007.t1.exon14;Parent=MS.gene42007.t1 |
| chr6.4 | CDS | 17205585 | 17205698 | 17205585 | ID=cds.MS.gene42007.t1;Parent=MS.gene42007.t1 |
| chr6.4 | exon | 17205302 | 17205398 | 17205302 | ID=MS.gene42007.t1.exon15;Parent=MS.gene42007.t1 |
| chr6.4 | CDS | 17205302 | 17205398 | 17205302 | ID=cds.MS.gene42007.t1;Parent=MS.gene42007.t1 |
| chr6.4 | exon | 17204912 | 17205042 | 17204912 | ID=MS.gene42007.t1.exon16;Parent=MS.gene42007.t1 |
| chr6.4 | CDS | 17204912 | 17205042 | 17204912 | ID=cds.MS.gene42007.t1;Parent=MS.gene42007.t1 |
| Gene Sequence |
| Protein sequence |
