Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42364.t1 | XP_013462091.1 | 95.8 | 356 | 13 | 1 | 1 | 356 | 1 | 354 | 3.20E-183 | 651 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42364.t1 | A0A072V374 | 95.8 | 356 | 13 | 1 | 1 | 356 | 1 | 354 | 2.3e-183 | 651.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene42364 | 0.836274 | 1.03E-56 | -1.69E-46 |
| MS.gene050099 | MS.gene42364 | 0.814175 | 1.76E-51 | -1.69E-46 |
| MS.gene051662 | MS.gene42364 | 0.850425 | 1.71E-60 | -1.69E-46 |
| MS.gene052600 | MS.gene42364 | 0.826833 | 2.18E-54 | -1.69E-46 |
| MS.gene054701 | MS.gene42364 | 0.8011 | 1.06E-48 | -1.69E-46 |
| MS.gene054942 | MS.gene42364 | 0.848609 | 5.49E-60 | -1.69E-46 |
| MS.gene057121 | MS.gene42364 | 0.804353 | 2.25E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42364.t1 | MTR_3g111540 | 95.787 | 356 | 13 | 1 | 1 | 356 | 1 | 354 | 0.0 | 687 |
| MS.gene42364.t1 | MTR_3g077500 | 29.907 | 321 | 206 | 6 | 42 | 349 | 56 | 370 | 4.86e-46 | 161 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42364.t1 | AT1G48460 | 60.584 | 274 | 104 | 1 | 83 | 356 | 71 | 340 | 5.92e-120 | 350 |
| MS.gene42364.t1 | AT1G48460 | 53.650 | 274 | 86 | 2 | 83 | 356 | 71 | 303 | 2.36e-98 | 294 |
| MS.gene42364.t1 | AT5G63040 | 29.762 | 336 | 222 | 5 | 13 | 346 | 35 | 358 | 1.14e-34 | 130 |
| MS.gene42364.t1 | AT5G63040 | 29.762 | 336 | 222 | 5 | 13 | 346 | 35 | 358 | 1.23e-34 | 130 |
Find 75 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGAGGCTATTCCCTTCT+AGG | 0.161760 | 3.1:+89144180 | MS.gene42364:CDS |
| AGATATCAGAAACAGAATTT+TGG | 0.173325 | 3.1:+89141617 | MS.gene42364:CDS |
| AGTTCTAGTGTTCCTGTTAA+TGG | 0.210562 | 3.1:+89141861 | MS.gene42364:CDS |
| GAGCTCTTACTTATGGGTTT+TGG | 0.226459 | 3.1:+89142001 | MS.gene42364:CDS |
| AGACAAACCTCAAATATAAT+AGG | 0.229602 | 3.1:-89143846 | None:intergenic |
| GCTTCTGATTCCAATGTAAA+TGG | 0.239192 | 3.1:+89141813 | MS.gene42364:CDS |
| AGCAGCACAGCCAACTAAAA+AGG | 0.270995 | 3.1:-89143766 | None:intergenic |
| TTAGAGCTGTACTGTAAATA+TGG | 0.272745 | 3.1:-89143603 | None:intergenic |
| CATCAACTTCTCGGCAAAAT+TGG | 0.283065 | 3.1:-89144036 | None:intergenic |
| AAGAGGAGAGCTCTTACTTA+TGG | 0.285229 | 3.1:+89141994 | MS.gene42364:CDS |
| GTTCTAGTGTTCCTGTTAAT+GGG | 0.303684 | 3.1:+89141862 | MS.gene42364:CDS |
| GAACCATTTCATGGTAAATC+AGG | 0.312758 | 3.1:+89141900 | MS.gene42364:CDS |
| GAACGAAGTGGAGCTTTGTT+TGG | 0.345152 | 3.1:+89144098 | MS.gene42364:CDS |
| TGCATACAATACCCAGTAAC+TGG | 0.357271 | 3.1:-89144136 | None:intergenic |
| TTTATTACTGACACGATGTT+TGG | 0.357578 | 3.1:-89141479 | None:intergenic |
| CCACTTCGTTCTAGTACTTC+AGG | 0.361982 | 3.1:-89144086 | None:intergenic |
| TCTAGTCCCTATTATATTTG+AGG | 0.362027 | 3.1:+89143839 | MS.gene42364:CDS |
| ATTTGCATTTGAGAGACATT+TGG | 0.369154 | 3.1:+89143791 | MS.gene42364:CDS |
| AATGGGTTGGAACCATTTCA+TGG | 0.370157 | 3.1:+89141891 | MS.gene42364:CDS |
| TACTGGGTATTGTATGCATT+TGG | 0.376974 | 3.1:+89144141 | MS.gene42364:CDS |
| CTTTCGCAGTCACAAGCAAC+TGG | 0.380671 | 3.1:+89141578 | MS.gene42364:intron |
| TTCCAATGTAAATGGTTCAT+TGG | 0.384931 | 3.1:+89141821 | MS.gene42364:CDS |
| TGGAGCTTTGTTTGGAATGA+TGG | 0.401307 | 3.1:+89144106 | MS.gene42364:CDS |
| GAACCTGATTTACCATGAAA+TGG | 0.410530 | 3.1:-89141903 | None:intergenic |
| ACCTCTGCTTTCCTCACAAC+GGG | 0.412478 | 3.1:+89143663 | MS.gene42364:CDS |
| AGAGGAGAGCTCTTACTTAT+GGG | 0.413551 | 3.1:+89141995 | MS.gene42364:CDS |
| AAAGATGATATGAATGCAAC+AGG | 0.422615 | 3.1:-89142026 | None:intergenic |
| GACAAACCTCAAATATAATA+GGG | 0.437022 | 3.1:-89143845 | None:intergenic |
| GAGAAGTGAAGTGGTTGAGA+GGG | 0.440340 | 3.1:-89141457 | None:intergenic |
| TACAGTACAGCTCTAAAAGA+TGG | 0.450227 | 3.1:+89143610 | MS.gene42364:CDS |
| CATAGAGTACATCAACTTCT+CGG | 0.455751 | 3.1:-89144045 | None:intergenic |
| AAAAGATGGGGTCTCATCAC+TGG | 0.458268 | 3.1:+89143624 | MS.gene42364:CDS |
| ACTTCCCTTCTTCTACAGAT+TGG | 0.459140 | 3.1:-89141950 | None:intergenic |
| TTTGATTTCAGCATTCAAAC+AGG | 0.466305 | 3.1:+89141728 | MS.gene42364:intron |
| TTCCAATGAACCATTTACAT+TGG | 0.468010 | 3.1:-89141823 | None:intergenic |
| GAAGTTGATGTACTCTATGA+AGG | 0.469649 | 3.1:+89144049 | MS.gene42364:CDS |
| CAGAGGTTATATATCCTTTG+AGG | 0.492149 | 3.1:-89143647 | None:intergenic |
| GGAGAAGTGAAGTGGTTGAG+AGG | 0.505328 | 3.1:-89141458 | None:intergenic |
| CATTGATGACGTTTCTCTTG+AGG | 0.505870 | 3.1:+89144165 | MS.gene42364:CDS |
| ACAGTACAGCTCTAAAAGAT+GGG | 0.516922 | 3.1:+89143611 | MS.gene42364:CDS |
| GTCGGTGGTTCGCATGGCAG+CGG | 0.518805 | 3.1:+89143728 | MS.gene42364:CDS |
| ACAGACGTGGGTCATCGTGC+TGG | 0.519318 | 3.1:+89143814 | MS.gene42364:CDS |
| ATTCTGCCACAGTTCTTCGT+TGG | 0.519550 | 3.1:+89142050 | MS.gene42364:CDS |
| ATCTGTAGAAGAAGGGAAGT+TGG | 0.519792 | 3.1:+89141953 | MS.gene42364:CDS |
| CTTCGTTGGCACTGTTGTTG+CGG | 0.536995 | 3.1:+89142064 | MS.gene42364:CDS |
| ACACACCAATCTGTAGAAGA+AGG | 0.538353 | 3.1:+89141945 | MS.gene42364:CDS |
| TTCTAGTGTTCCTGTTAATG+GGG | 0.540217 | 3.1:+89141863 | MS.gene42364:CDS |
| GGTCTCATCACTGGCCTCAA+AGG | 0.549169 | 3.1:+89143633 | MS.gene42364:CDS |
| GAGCTCTCCTCTTGTTTGAA+CGG | 0.557951 | 3.1:-89141984 | None:intergenic |
| GTCACATACAAAAGAAGAAG+AGG | 0.559688 | 3.1:-89143702 | None:intergenic |
| GACCTGGTCGGTGGTTCGCA+TGG | 0.562381 | 3.1:+89143722 | MS.gene42364:CDS |
| TGCCATGCGAACCACCGACC+AGG | 0.563381 | 3.1:-89143724 | None:intergenic |
| TGTACTGTAAATATGGCCTC+TGG | 0.563744 | 3.1:-89143596 | None:intergenic |
| AAGTTGATGTACTCTATGAA+GGG | 0.577690 | 3.1:+89144050 | MS.gene42364:CDS |
| TCCGAGGCACTGTTCTATGT+CGG | 0.580851 | 3.1:+89143540 | MS.gene42364:CDS |
| ATCTGCTCCGTTCAAACAAG+AGG | 0.588809 | 3.1:+89141977 | MS.gene42364:CDS |
| GAGAGACATTTGGACAGACG+TGG | 0.588933 | 3.1:+89143801 | MS.gene42364:CDS |
| TTTCTGCTACTGGCCTAGAA+GGG | 0.597512 | 3.1:-89144193 | None:intergenic |
| TCAAATATAATAGGGACTAG+AGG | 0.608339 | 3.1:-89143837 | None:intergenic |
| CACACCAATCTGTAGAAGAA+GGG | 0.610794 | 3.1:+89141946 | MS.gene42364:CDS |
| TGTGACTTCATTCTCTTCCG+AGG | 0.611821 | 3.1:+89143524 | MS.gene42364:CDS |
| AACCTCTGCTTTCCTCACAA+CGG | 0.613720 | 3.1:+89143662 | MS.gene42364:CDS |
| TCTAGTGTTCCTGTTAATGG+GGG | 0.617974 | 3.1:+89141864 | MS.gene42364:CDS |
| AGTTGATGTACTCTATGAAG+GGG | 0.619565 | 3.1:+89144051 | MS.gene42364:CDS |
| TCCGACATAGAACAGTGCCT+CGG | 0.628444 | 3.1:-89143541 | None:intergenic |
| AGGTGGCTGATCGTGTCCAG+AGG | 0.630587 | 3.1:+89143580 | MS.gene42364:CDS |
| TCTAGTACTTCAGGTGACGC+AGG | 0.632274 | 3.1:-89144077 | None:intergenic |
| TTTGTATGTGACCTGGTCGG+TGG | 0.632802 | 3.1:+89143713 | MS.gene42364:CDS |
| CGATGTTTGGAGAAGTGAAG+TGG | 0.648063 | 3.1:-89141466 | None:intergenic |
| CCTGAAGTACTAGAACGAAG+TGG | 0.656210 | 3.1:+89144086 | MS.gene42364:CDS |
| CAGTACAGCTCTAAAAGATG+GGG | 0.663248 | 3.1:+89143612 | MS.gene42364:CDS |
| AGAGACATTTGGACAGACGT+GGG | 0.672518 | 3.1:+89143802 | MS.gene42364:CDS |
| ATACAAAAGAAGAAGAGGAA+CGG | 0.679901 | 3.1:-89143697 | None:intergenic |
| ACCCGTTGTGAGGAAAGCAG+AGG | 0.694025 | 3.1:-89143664 | None:intergenic |
| ACAGTGCCAACGAAGAACTG+TGG | 0.710210 | 3.1:-89142056 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATGATTTGATTTTAAA+AGG | + | chr3.1:89142092-89142111 | MS.gene42364:CDS | 10.0% |
| !!! | ATTTATAACAATTTGTTGAA+TGG | - | chr3.1:89141701-89141720 | None:intergenic | 15.0% |
| !!! | GAAATTATTTTGTTTACTTA+AGG | - | chr3.1:89143028-89143047 | None:intergenic | 15.0% |
| !! | CTTTGATAAAACTTAATGAA+AGG | - | chr3.1:89142419-89142438 | None:intergenic | 20.0% |
| !! | GTTAATACCAAATTAGTTAT+TGG | + | chr3.1:89142926-89142945 | MS.gene42364:intron | 20.0% |
| !! | TATAAAGCCAATAACTAATT+TGG | - | chr3.1:89142936-89142955 | None:intergenic | 20.0% |
| !!! | AAATGTACGATTTTTGTTTT+TGG | + | chr3.1:89141656-89141675 | MS.gene42364:intron | 20.0% |
| !!! | AATGTACGATTTTTGTTTTT+GGG | + | chr3.1:89141657-89141676 | MS.gene42364:intron | 20.0% |
| !!! | ATGATAATTGTTTTTGTTGT+AGG | + | chr3.1:89142780-89142799 | MS.gene42364:intron | 20.0% |
| !!! | ATTAAAGAACCTTCATTTTT+GGG | + | chr3.1:89141753-89141772 | MS.gene42364:CDS | 20.0% |
| !!! | CAGAATTTTATTTTACTTGT+CGG | - | chr3.1:89142742-89142761 | None:intergenic | 20.0% |
| ! | AAAAGAATGGAGTTACATAA+AGG | + | chr3.1:89143413-89143432 | MS.gene42364:intron | 25.0% |
| ! | AAGAAGAAAAAAAGTTAGTG+TGG | - | chr3.1:89141558-89141577 | None:intergenic | 25.0% |
| ! | AGACAAACCTCAAATATAAT+AGG | - | chr3.1:89143849-89143868 | None:intergenic | 25.0% |
| ! | ATCAGCAATATAAACACATT+AGG | - | chr3.1:89142849-89142868 | None:intergenic | 25.0% |
| ! | CCATTCATAATTACAAAACA+TGG | - | chr3.1:89142556-89142575 | None:intergenic | 25.0% |
| ! | CCATTCATAATTTCAAAACA+TGG | - | chr3.1:89143142-89143161 | None:intergenic | 25.0% |
| ! | GACAAACCTCAAATATAATA+GGG | - | chr3.1:89143848-89143867 | None:intergenic | 25.0% |
| ! | GTTAATGCCAAATTATTTAG+TGG | + | chr3.1:89142340-89142359 | MS.gene42364:intron | 25.0% |
| ! | TATATGGTAGTATGTTGTTA+AGG | + | chr3.1:89142890-89142909 | MS.gene42364:intron | 25.0% |
| ! | TGGGATTGAAAAAATTTCAA+AGG | + | chr3.1:89141772-89141791 | MS.gene42364:CDS | 25.0% |
| !! | AGATATCAGAAACAGAATTT+TGG | + | chr3.1:89141617-89141636 | MS.gene42364:CDS | 25.0% |
| !! | CCATGTTTTGTAATTATGAA+TGG | + | chr3.1:89142553-89142572 | MS.gene42364:intron | 25.0% |
| !! | GATATCAGAAACAGAATTTT+GGG | + | chr3.1:89141618-89141637 | MS.gene42364:CDS | 25.0% |
| !! | GATTAAAGAACCTTCATTTT+TGG | + | chr3.1:89141752-89141771 | MS.gene42364:CDS | 25.0% |
| !! | TATTTTACTTGTCGGAAATT+CGG | - | chr3.1:89142734-89142753 | None:intergenic | 25.0% |
| !! | TCACAATATCTGCATTTTAT+TGG | - | chr3.1:89143509-89143528 | None:intergenic | 25.0% |
| !! | TTTATGTAACTCCATTCTTT+TGG | - | chr3.1:89143414-89143433 | None:intergenic | 25.0% |
| !!! | ACTATTTGTTGTTATCTTTG+TGG | + | chr3.1:89143108-89143127 | MS.gene42364:intron | 25.0% |
| !!! | ATATTCTGGTTGTTATTTCA+CGG | - | chr3.1:89142814-89142833 | None:intergenic | 25.0% |
| !!! | CCATGTTTTGAAATTATGAA+TGG | + | chr3.1:89143139-89143158 | MS.gene42364:intron | 25.0% |
| !!! | TTTTTCAATCCCAAAAATGA+AGG | - | chr3.1:89141765-89141784 | None:intergenic | 25.0% |
| AAAGAAATGACTTTGTATGC+CGG | - | chr3.1:89142445-89142464 | None:intergenic | 30.0% | |
| AAAGATGATATGAATGCAAC+AGG | - | chr3.1:89142029-89142048 | None:intergenic | 30.0% | |
| AAGAGTTATACAACAAACAG+AGG | - | chr3.1:89142652-89142671 | None:intergenic | 30.0% | |
| AGAAATGCAGAGAAATTCAA+GGG | - | chr3.1:89143183-89143202 | None:intergenic | 30.0% | |
| AGTTCTTTGTCTACACTATA+TGG | + | chr3.1:89142874-89142893 | MS.gene42364:intron | 30.0% | |
| ATAACAACAAATAGTGTCAG+TGG | - | chr3.1:89143103-89143122 | None:intergenic | 30.0% | |
| ATACAAAAGAAGAAGAGGAA+CGG | - | chr3.1:89143700-89143719 | None:intergenic | 30.0% | |
| ATTTGCATTTGAGAGACATT+TGG | + | chr3.1:89143791-89143810 | MS.gene42364:CDS | 30.0% | |
| CATCAAGCCACTAAATAATT+TGG | - | chr3.1:89142350-89142369 | None:intergenic | 30.0% | |
| GAAATTCTGTTCCAAAAGAA+TGG | + | chr3.1:89143400-89143419 | MS.gene42364:intron | 30.0% | |
| TAGAAATGCAGAGAAATTCA+AGG | - | chr3.1:89143184-89143203 | None:intergenic | 30.0% | |
| TCAAATATAATAGGGACTAG+AGG | - | chr3.1:89143840-89143859 | None:intergenic | 30.0% | |
| TCAATTACCAATAGTCTTTG+AGG | - | chr3.1:89142981-89143000 | None:intergenic | 30.0% | |
| TCTAGTCCCTATTATATTTG+AGG | + | chr3.1:89143839-89143858 | MS.gene42364:CDS | 30.0% | |
| TGAAAGGATCAATTATCAAC+AGG | - | chr3.1:89142403-89142422 | None:intergenic | 30.0% | |
| TGAGTTCTCACTAACATATA+TGG | + | chr3.1:89143262-89143281 | MS.gene42364:intron | 30.0% | |
| TTAGAGCTGTACTGTAAATA+TGG | - | chr3.1:89143606-89143625 | None:intergenic | 30.0% | |
| TTCCAATGAACCATTTACAT+TGG | - | chr3.1:89141826-89141845 | None:intergenic | 30.0% | |
| TTCCAATGTAAATGGTTCAT+TGG | + | chr3.1:89141821-89141840 | MS.gene42364:CDS | 30.0% | |
| TTTATTACTGACACGATGTT+TGG | - | chr3.1:89141482-89141501 | None:intergenic | 30.0% | |
| ! | AATTTAAAGCACAGAACAGA+AGG | - | chr3.1:89142166-89142185 | None:intergenic | 30.0% |
| ! | ATTTTGCCAAAATCGCTAAA+AGG | - | chr3.1:89143317-89143336 | None:intergenic | 30.0% |
| ! | CAAAGACTATTGGTAATTGA+TGG | + | chr3.1:89142981-89143000 | MS.gene42364:intron | 30.0% |
| ! | TGTATACCTTTTAGCGATTT+TGG | + | chr3.1:89143308-89143327 | MS.gene42364:intron | 30.0% |
| ! | TTCTGTTCTGTGCTTTAAAT+TGG | + | chr3.1:89142165-89142184 | MS.gene42364:intron | 30.0% |
| ! | TTTGATTTCAGCATTCAAAC+AGG | + | chr3.1:89141728-89141747 | MS.gene42364:intron | 30.0% |
| ! | TTTGTTTGTGCTGTTAAATG+TGG | + | chr3.1:89143443-89143462 | MS.gene42364:intron | 30.0% |
| !! | AAGTTGATGTACTCTATGAA+GGG | + | chr3.1:89144050-89144069 | MS.gene42364:CDS | 30.0% |
| !! | CTGTTTGTTGTATAACTCTT+GGG | + | chr3.1:89142652-89142671 | MS.gene42364:intron | 30.0% |
| !! | TCTGTTTGTTGTATAACTCT+TGG | + | chr3.1:89142651-89142670 | MS.gene42364:intron | 30.0% |
| !! | TTAAGTTTTATCAAAGCCTC+CGG | + | chr3.1:89142423-89142442 | MS.gene42364:intron | 30.0% |
| AAGCTAACAACAACTAGTGT+TGG | - | chr3.1:89142520-89142539 | None:intergenic | 35.0% | |
| ACAAATCCGATAGAATAACG+TGG | - | chr3.1:89143349-89143368 | None:intergenic | 35.0% | |
| ATGGAGTTACATAAAGGTCA+TGG | + | chr3.1:89143419-89143438 | MS.gene42364:intron | 35.0% | |
| CAGAGGTTATATATCCTTTG+AGG | - | chr3.1:89143650-89143669 | None:intergenic | 35.0% | |
| CATAGAGTACATCAACTTCT+CGG | - | chr3.1:89144048-89144067 | None:intergenic | 35.0% | |
| CTGTTAATGGGGGTTATAAT+GGG | + | chr3.1:89141874-89141893 | MS.gene42364:CDS | 35.0% | |
| GAAATGCAGAGAAATTCAAG+GGG | - | chr3.1:89143182-89143201 | None:intergenic | 35.0% | |
| GAACCATTTCATGGTAAATC+AGG | + | chr3.1:89141900-89141919 | MS.gene42364:CDS | 35.0% | |
| GAACCTGATTTACCATGAAA+TGG | - | chr3.1:89141906-89141925 | None:intergenic | 35.0% | |
| GCTTCTGATTCCAATGTAAA+TGG | + | chr3.1:89141813-89141832 | MS.gene42364:CDS | 35.0% | |
| GGAACAGCAATCATATATTC+TGG | - | chr3.1:89142828-89142847 | None:intergenic | 35.0% | |
| GTCACATACAAAAGAAGAAG+AGG | - | chr3.1:89143705-89143724 | None:intergenic | 35.0% | |
| GTGTTTCCACGTTATTCTAT+CGG | + | chr3.1:89143340-89143359 | MS.gene42364:intron | 35.0% | |
| GTTCTAGTGTTCCTGTTAAT+GGG | + | chr3.1:89141862-89141881 | MS.gene42364:CDS | 35.0% | |
| GTTCTCACTAACATATATGG+AGG | + | chr3.1:89143265-89143284 | MS.gene42364:intron | 35.0% | |
| TCAATTATCAACAGGCTTTG+AGG | - | chr3.1:89142395-89142414 | None:intergenic | 35.0% | |
| TCTCACTCAGATAACATACA+TGG | + | chr3.1:89142610-89142629 | MS.gene42364:intron | 35.0% | |
| TGAGAGGAATAACAACAACT+TGG | + | chr3.1:89143927-89143946 | MS.gene42364:intron | 35.0% | |
| TGTATAACTCTTGGGTATCT+TGG | + | chr3.1:89142660-89142679 | MS.gene42364:intron | 35.0% | |
| TTCTAGTGTTCCTGTTAATG+GGG | + | chr3.1:89141863-89141882 | MS.gene42364:CDS | 35.0% | |
| ! | AGTTCTAGTGTTCCTGTTAA+TGG | + | chr3.1:89141861-89141880 | MS.gene42364:CDS | 35.0% |
| ! | AGTTGATGTACTCTATGAAG+GGG | + | chr3.1:89144051-89144070 | MS.gene42364:CDS | 35.0% |
| ! | ATGGTGATTTTCCAGTTACT+GGG | + | chr3.1:89144125-89144144 | MS.gene42364:CDS | 35.0% |
| ! | CAGGTTCTGTCTCTTTTTAT+GGG | + | chr3.1:89141919-89141938 | MS.gene42364:CDS | 35.0% |
| ! | GTTCTGTGCTTTAAATTGGA+TGG | + | chr3.1:89142169-89142188 | MS.gene42364:intron | 35.0% |
| ! | TACTGGGTATTGTATGCATT+TGG | + | chr3.1:89144141-89144160 | MS.gene42364:CDS | 35.0% |
| ! | TCAGGTTCTGTCTCTTTTTA+TGG | + | chr3.1:89141918-89141937 | MS.gene42364:CDS | 35.0% |
| ! | TGCTCTTTTTGTCTACACTT+CGG | + | chr3.1:89142283-89142302 | MS.gene42364:intron | 35.0% |
| ! | TTCTTCTTTTGTATGTGACC+TGG | + | chr3.1:89143706-89143725 | MS.gene42364:CDS | 35.0% |
| !! | ACAGTACAGCTCTAAAAGAT+GGG | + | chr3.1:89143611-89143630 | MS.gene42364:CDS | 35.0% |
| !! | ACTAGTTGTTGTTAGCTTTG+TGG | + | chr3.1:89142522-89142541 | MS.gene42364:intron | 35.0% |
| !! | GAAGTTGATGTACTCTATGA+AGG | + | chr3.1:89144049-89144068 | MS.gene42364:CDS | 35.0% |
| !! | TACAGTACAGCTCTAAAAGA+TGG | + | chr3.1:89143610-89143629 | MS.gene42364:CDS | 35.0% |
| !! | TGAAATTGAATTGACTTGCC+AGG | + | chr3.1:89143983-89144002 | MS.gene42364:intron | 35.0% |
| AAGAGGAGAGCTCTTACTTA+TGG | + | chr3.1:89141994-89142013 | MS.gene42364:CDS | 40.0% | |
| ACACACCAATCTGTAGAAGA+AGG | + | chr3.1:89141945-89141964 | MS.gene42364:CDS | 40.0% | |
| ACTTCCCTTCTTCTACAGAT+TGG | - | chr3.1:89141953-89141972 | None:intergenic | 40.0% | |
| AGAGGAGAGCTCTTACTTAT+GGG | + | chr3.1:89141995-89142014 | MS.gene42364:CDS | 40.0% | |
| AGTGTAGACAAAAAGAGCAG+CGG | - | chr3.1:89142282-89142301 | None:intergenic | 40.0% | |
| ATCTGTAGAAGAAGGGAAGT+TGG | + | chr3.1:89141953-89141972 | MS.gene42364:CDS | 40.0% | |
| ATGCGAACCTCAAAGACTAT+TGG | + | chr3.1:89142971-89142990 | MS.gene42364:intron | 40.0% | |
| CACACCAATCTGTAGAAGAA+GGG | + | chr3.1:89141946-89141965 | MS.gene42364:CDS | 40.0% | |
| CATCAACTTCTCGGCAAAAT+TGG | - | chr3.1:89144039-89144058 | None:intergenic | 40.0% | |
| CCATTATAACCCCCATTAAC+AGG | - | chr3.1:89141876-89141895 | None:intergenic | 40.0% | |
| CCTGTTAATGGGGGTTATAA+TGG | + | chr3.1:89141873-89141892 | MS.gene42364:CDS | 40.0% | |
| GCTGATACAATCTGTATACC+TGG | - | chr3.1:89144004-89144023 | None:intergenic | 40.0% | |
| GGCAAAACTTTGTGTTTCCA+TGG | + | chr3.1:89142681-89142700 | MS.gene42364:intron | 40.0% | |
| TCTAGTGTTCCTGTTAATGG+GGG | + | chr3.1:89141864-89141883 | MS.gene42364:CDS | 40.0% | |
| TGCATACAATACCCAGTAAC+TGG | - | chr3.1:89144139-89144158 | None:intergenic | 40.0% | |
| TGTACTGTAAATATGGCCTC+TGG | - | chr3.1:89143599-89143618 | None:intergenic | 40.0% | |
| TGTTTCCATGGTGTTCTGTT+GGG | + | chr3.1:89142693-89142712 | MS.gene42364:intron | 40.0% | |
| ! | ACTTGCAACATTTTTGCAGG+TGG | + | chr3.1:89143563-89143582 | MS.gene42364:CDS | 40.0% |
| ! | CAATTTTCAAACCCGTTGTG+AGG | - | chr3.1:89143677-89143696 | None:intergenic | 40.0% |
| ! | CGCTAAAAGGTATACAGCAA+AGG | - | chr3.1:89143304-89143323 | None:intergenic | 40.0% |
| ! | CTAACAACAACTAGTGTTGG+TGG | - | chr3.1:89142517-89142536 | None:intergenic | 40.0% |
| ! | CTTTTTGTCTACACTTCGGT+AGG | + | chr3.1:89142287-89142306 | MS.gene42364:intron | 40.0% |
| ! | GAGCTCTTACTTATGGGTTT+TGG | + | chr3.1:89142001-89142020 | MS.gene42364:CDS | 40.0% |
| ! | GATGGTGATTTTCCAGTTAC+TGG | + | chr3.1:89144124-89144143 | MS.gene42364:CDS | 40.0% |
| ! | TCTTTTGTATGTGACCTGGT+CGG | + | chr3.1:89143710-89143729 | MS.gene42364:CDS | 40.0% |
| !! | AATGGGTTGGAACCATTTCA+TGG | + | chr3.1:89141891-89141910 | MS.gene42364:CDS | 40.0% |
| !! | CAGTACAGCTCTAAAAGATG+GGG | + | chr3.1:89143612-89143631 | MS.gene42364:CDS | 40.0% |
| !! | CATTGATGACGTTTCTCTTG+AGG | + | chr3.1:89144165-89144184 | MS.gene42364:CDS | 40.0% |
| !! | CTGCATTTCTAGTGCTTCTT+GGG | + | chr3.1:89143193-89143212 | MS.gene42364:intron | 40.0% |
| !! | GCTATAGCTCCCTTTTTAGT+TGG | + | chr3.1:89143756-89143775 | MS.gene42364:CDS | 40.0% |
| !! | GTTTTAGATGTAGACTCTCG+TGG | + | chr3.1:89143216-89143235 | MS.gene42364:intron | 40.0% |
| !! | TAATGGGGGTTATAATGGGT+TGG | + | chr3.1:89141878-89141897 | MS.gene42364:CDS | 40.0% |
| !! | TCTGCATTTCTAGTGCTTCT+TGG | + | chr3.1:89143192-89143211 | MS.gene42364:intron | 40.0% |
| !! | TGCATTTCTAGTGCTTCTTG+GGG | + | chr3.1:89143194-89143213 | MS.gene42364:intron | 40.0% |
| !! | TGGAGCTTTGTTTGGAATGA+TGG | + | chr3.1:89144106-89144125 | MS.gene42364:CDS | 40.0% |
| AAAACCCCAACAGAACACCA+TGG | - | chr3.1:89142701-89142720 | None:intergenic | 45.0% | |
| AAAAGATGGGGTCTCATCAC+TGG | + | chr3.1:89143624-89143643 | MS.gene42364:CDS | 45.0% | |
| AACCTCTGCTTTCCTCACAA+CGG | + | chr3.1:89143662-89143681 | MS.gene42364:CDS | 45.0% | |
| AGAGACATTTGGACAGACGT+GGG | + | chr3.1:89143802-89143821 | MS.gene42364:CDS | 45.0% | |
| AGCAGCACAGCCAACTAAAA+AGG | - | chr3.1:89143769-89143788 | None:intergenic | 45.0% | |
| AGTGGTAAGTACAGAACCAG+AGG | - | chr3.1:89143085-89143104 | None:intergenic | 45.0% | |
| ATCTGCTCCGTTCAAACAAG+AGG | + | chr3.1:89141977-89141996 | MS.gene42364:CDS | 45.0% | |
| ATTCTGCCACAGTTCTTCGT+TGG | + | chr3.1:89142050-89142069 | MS.gene42364:CDS | 45.0% | |
| CCACTTCGTTCTAGTACTTC+AGG | - | chr3.1:89144089-89144108 | None:intergenic | 45.0% | |
| CGATGTTTGGAGAAGTGAAG+TGG | - | chr3.1:89141469-89141488 | None:intergenic | 45.0% | |
| GAAATGACTTTGTATGCCGG+AGG | - | chr3.1:89142442-89142461 | None:intergenic | 45.0% | |
| GAGAAGTGAAGTGGTTGAGA+GGG | - | chr3.1:89141460-89141479 | None:intergenic | 45.0% | |
| GCAGCACAGCCAACTAAAAA+GGG | - | chr3.1:89143768-89143787 | None:intergenic | 45.0% | |
| GTGTTTCCATGGTGTTCTGT+TGG | + | chr3.1:89142692-89142711 | MS.gene42364:intron | 45.0% | |
| GTTTCCATGGTGTTCTGTTG+GGG | + | chr3.1:89142694-89142713 | MS.gene42364:intron | 45.0% | |
| TCTTGAGGCTATTCCCTTCT+AGG | + | chr3.1:89144180-89144199 | MS.gene42364:CDS | 45.0% | |
| TGTGACTTCATTCTCTTCCG+AGG | + | chr3.1:89143524-89143543 | MS.gene42364:CDS | 45.0% | |
| ! | CCTGAAGTACTAGAACGAAG+TGG | + | chr3.1:89144086-89144105 | MS.gene42364:CDS | 45.0% |
| ! | CGGACTTGCAACATTTTTGC+AGG | + | chr3.1:89143560-89143579 | MS.gene42364:CDS | 45.0% |
| ! | GAGCTCTCCTCTTGTTTGAA+CGG | - | chr3.1:89141987-89142006 | None:intergenic | 45.0% |
| ! | TTTCTGCTACTGGCCTAGAA+GGG | - | chr3.1:89144196-89144215 | None:intergenic | 45.0% |
| !! | GAACGAAGTGGAGCTTTGTT+TGG | + | chr3.1:89144098-89144117 | MS.gene42364:CDS | 45.0% |
| !! | TCAGTTCTGAAGCAAACCTC+TGG | + | chr3.1:89143066-89143085 | MS.gene42364:intron | 45.0% |
| !! | TTTTCTGCTACTGGCCTAGA+AGG | - | chr3.1:89144197-89144216 | None:intergenic | 45.0% |
| ACAGTGCCAACGAAGAACTG+TGG | - | chr3.1:89142059-89142078 | None:intergenic | 50.0% | |
| ACCTCTGCTTTCCTCACAAC+GGG | + | chr3.1:89143663-89143682 | MS.gene42364:CDS | 50.0% | |
| ACTTCGGTAGGACACTGTTG+AGG | + | chr3.1:89142299-89142318 | MS.gene42364:intron | 50.0% | |
| ATGCAGCTTGACGAGTCTAC+TGG | + | chr3.1:89143902-89143921 | MS.gene42364:intron | 50.0% | |
| CTTCGTTGGCACTGTTGTTG+CGG | + | chr3.1:89142064-89142083 | MS.gene42364:CDS | 50.0% | |
| CTTTCGCAGTCACAAGCAAC+TGG | + | chr3.1:89141578-89141597 | MS.gene42364:intron | 50.0% | |
| GAGAGACATTTGGACAGACG+TGG | + | chr3.1:89143801-89143820 | MS.gene42364:CDS | 50.0% | |
| GGAGAAGTGAAGTGGTTGAG+AGG | - | chr3.1:89141461-89141480 | None:intergenic | 50.0% | |
| GGTGGTCAGTACAGAACTAG+AGG | - | chr3.1:89142499-89142518 | None:intergenic | 50.0% | |
| TCCGACATAGAACAGTGCCT+CGG | - | chr3.1:89143544-89143563 | None:intergenic | 50.0% | |
| TCTAGTACTTCAGGTGACGC+AGG | - | chr3.1:89144080-89144099 | None:intergenic | 50.0% | |
| TTTGTATGTGACCTGGTCGG+TGG | + | chr3.1:89143713-89143732 | MS.gene42364:CDS | 50.0% | |
| !! | TCCGAGGCACTGTTCTATGT+CGG | + | chr3.1:89143540-89143559 | MS.gene42364:CDS | 50.0% |
| ACCCGTTGTGAGGAAAGCAG+AGG | - | chr3.1:89143667-89143686 | None:intergenic | 55.0% | |
| ! | GACGAGTCTACTGGTCTGAG+AGG | + | chr3.1:89143911-89143930 | MS.gene42364:intron | 55.0% |
| ! | GGTCTCATCACTGGCCTCAA+AGG | + | chr3.1:89143633-89143652 | MS.gene42364:CDS | 55.0% |
| ACAGACGTGGGTCATCGTGC+TGG | + | chr3.1:89143814-89143833 | MS.gene42364:CDS | 60.0% | |
| AGGTGGCTGATCGTGTCCAG+AGG | + | chr3.1:89143580-89143599 | MS.gene42364:CDS | 60.0% | |
| GACCTGGTCGGTGGTTCGCA+TGG | + | chr3.1:89143722-89143741 | MS.gene42364:CDS | 65.0% | |
| GTCGGTGGTTCGCATGGCAG+CGG | + | chr3.1:89143728-89143747 | MS.gene42364:CDS | 65.0% | |
| TGCCATGCGAACCACCGACC+AGG | - | chr3.1:89143727-89143746 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 89141427 | 89144223 | 89141427 | ID=MS.gene42364 |
| chr3.1 | mRNA | 89141427 | 89144223 | 89141427 | ID=MS.gene42364.t1;Parent=MS.gene42364 |
| chr3.1 | exon | 89141427 | 89141489 | 89141427 | ID=MS.gene42364.t1.exon1;Parent=MS.gene42364.t1 |
| chr3.1 | CDS | 89141427 | 89141489 | 89141427 | ID=cds.MS.gene42364.t1;Parent=MS.gene42364.t1 |
| chr3.1 | exon | 89141587 | 89141659 | 89141587 | ID=MS.gene42364.t1.exon2;Parent=MS.gene42364.t1 |
| chr3.1 | CDS | 89141587 | 89141659 | 89141587 | ID=cds.MS.gene42364.t1;Parent=MS.gene42364.t1 |
| chr3.1 | exon | 89141739 | 89142113 | 89141739 | ID=MS.gene42364.t1.exon3;Parent=MS.gene42364.t1 |
| chr3.1 | CDS | 89141739 | 89142113 | 89141739 | ID=cds.MS.gene42364.t1;Parent=MS.gene42364.t1 |
| chr3.1 | exon | 89143520 | 89143860 | 89143520 | ID=MS.gene42364.t1.exon4;Parent=MS.gene42364.t1 |
| chr3.1 | CDS | 89143520 | 89143860 | 89143520 | ID=cds.MS.gene42364.t1;Parent=MS.gene42364.t1 |
| chr3.1 | exon | 89144005 | 89144223 | 89144005 | ID=MS.gene42364.t1.exon5;Parent=MS.gene42364.t1 |
| chr3.1 | CDS | 89144005 | 89144223 | 89144005 | ID=cds.MS.gene42364.t1;Parent=MS.gene42364.t1 |
| Gene Sequence |
| Protein sequence |
