Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054701.t1 | XP_003614114.1 | 96.4 | 579 | 20 | 1 | 1 | 579 | 1 | 578 | 1.10E-286 | 995.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054701.t1 | F4I0K2 | 61.4 | 591 | 197 | 8 | 1 | 573 | 1 | 578 | 5.0e-174 | 612.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054701.t1 | G7JY18 | 96.4 | 579 | 20 | 1 | 1 | 579 | 1 | 578 | 8.2e-287 | 995.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene054701 | 0.80978 | 1.60E-50 | -1.69E-46 |
| MS.gene052600 | MS.gene054701 | 0.821833 | 3.27E-53 | -1.69E-46 |
| MS.gene054701 | MS.gene054942 | 0.804098 | 2.54E-49 | -1.69E-46 |
| MS.gene054701 | MS.gene058833 | 0.823493 | 1.34E-53 | -1.69E-46 |
| MS.gene054701 | MS.gene06420 | 0.805449 | 1.33E-49 | -1.69E-46 |
| MS.gene054701 | MS.gene068549 | 0.80984 | 1.55E-50 | -1.69E-46 |
| MS.gene054701 | MS.gene068972 | 0.805031 | 1.62E-49 | -1.69E-46 |
| MS.gene054701 | MS.gene073833 | 0.823076 | 1.68E-53 | -1.69E-46 |
| MS.gene054701 | MS.gene09573 | 0.805263 | 1.45E-49 | -1.69E-46 |
| MS.gene054701 | MS.gene30855 | 0.81154 | 6.65E-51 | -1.69E-46 |
| MS.gene054701 | MS.gene42364 | 0.8011 | 1.06E-48 | -1.69E-46 |
| MS.gene054701 | MS.gene54286 | 0.845397 | 4.17E-59 | -1.69E-46 |
| MS.gene054701 | MS.gene59564 | 0.827507 | 1.51E-54 | -1.69E-46 |
| MS.gene054701 | MS.gene69119 | 0.819934 | 8.95E-53 | -1.69E-46 |
| MS.gene054701 | MS.gene72128 | 0.824857 | 6.43E-54 | -1.69E-46 |
| MS.gene054701 | MS.gene72130 | 0.822882 | 1.87E-53 | -1.69E-46 |
| MS.gene054701 | MS.gene85851 | 0.80631 | 8.75E-50 | -1.69E-46 |
| MS.gene054701 | MS.gene86003 | 0.822303 | 2.55E-53 | -1.69E-46 |
| MS.gene054701 | MS.gene86259 | 0.848315 | 6.63E-60 | -1.69E-46 |
| MS.gene054701 | MS.gene89326 | 0.801578 | 8.43E-49 | -1.69E-46 |
| MS.gene054701 | MS.gene92752 | 0.800511 | 1.39E-48 | -1.69E-46 |
| MS.gene054701 | MS.gene92931 | 0.829779 | 4.25E-55 | -1.69E-46 |
| MS.gene054701 | MS.gene93202 | 0.822303 | 2.55E-53 | -1.69E-46 |
| MS.gene054701 | MS.gene93731 | 0.811566 | 6.57E-51 | -1.69E-46 |
| MS.gene054701 | MS.gene94440 | 0.828866 | 7.08E-55 | -1.69E-46 |
| MS.gene054701 | MS.gene95277 | 0.82908 | 6.29E-55 | -1.69E-46 |
| MS.gene054701 | MS.gene98277 | 0.825809 | 3.83E-54 | -1.69E-46 |
| MS.gene054701 | MS.gene99261 | 0.862526 | 4.76E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054701.t1 | MTR_5g044990 | 96.373 | 579 | 20 | 1 | 1 | 579 | 1 | 578 | 0.0 | 1156 |
| MS.gene054701.t1 | MTR_4g019165 | 44.330 | 388 | 190 | 6 | 189 | 561 | 81 | 457 | 1.66e-111 | 341 |
| MS.gene054701.t1 | MTR_1g076850 | 31.322 | 348 | 200 | 5 | 210 | 554 | 7 | 318 | 2.31e-50 | 177 |
| MS.gene054701.t1 | MTR_2g098950 | 32.686 | 309 | 183 | 5 | 251 | 556 | 40 | 326 | 1.87e-49 | 174 |
| MS.gene054701.t1 | MTR_4g067310 | 31.214 | 346 | 199 | 6 | 211 | 553 | 15 | 324 | 2.82e-49 | 174 |
| MS.gene054701.t1 | MTR_1g101950 | 29.942 | 344 | 204 | 5 | 211 | 551 | 23 | 332 | 1.10e-47 | 170 |
| MS.gene054701.t1 | MTR_6g089480 | 31.250 | 304 | 186 | 5 | 251 | 551 | 20 | 303 | 3.18e-47 | 168 |
| MS.gene054701.t1 | MTR_6g089480 | 32.234 | 273 | 162 | 5 | 251 | 520 | 20 | 272 | 2.62e-44 | 159 |
| MS.gene054701.t1 | MTR_6g089480 | 32.222 | 270 | 160 | 5 | 251 | 517 | 20 | 269 | 9.58e-44 | 157 |
| MS.gene054701.t1 | MTR_5g079460 | 30.725 | 345 | 201 | 7 | 210 | 551 | 66 | 375 | 3.19e-43 | 159 |
| MS.gene054701.t1 | MTR_1g057810 | 29.934 | 304 | 189 | 5 | 253 | 553 | 276 | 558 | 7.50e-38 | 147 |
| MS.gene054701.t1 | MTR_7g075860 | 28.788 | 330 | 196 | 7 | 210 | 534 | 40 | 335 | 7.70e-38 | 144 |
| MS.gene054701.t1 | MTR_1g105150 | 28.289 | 304 | 180 | 6 | 253 | 553 | 276 | 544 | 1.78e-31 | 129 |
| MS.gene054701.t1 | MTR_1g069745 | 26.230 | 305 | 188 | 8 | 251 | 551 | 9 | 280 | 1.45e-29 | 119 |
| MS.gene054701.t1 | MTR_1g069490 | 26.000 | 300 | 197 | 6 | 258 | 551 | 113 | 393 | 4.16e-28 | 117 |
| MS.gene054701.t1 | MTR_1g054730 | 31.126 | 151 | 99 | 2 | 275 | 422 | 154 | 302 | 8.92e-17 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054701.t1 | AT1G69200 | 57.939 | 592 | 216 | 9 | 1 | 573 | 1 | 578 | 0.0 | 657 |
| MS.gene054701.t1 | AT3G54090 | 43.590 | 390 | 204 | 5 | 187 | 561 | 78 | 466 | 8.36e-108 | 332 |
| MS.gene054701.t1 | AT5G51830 | 30.899 | 356 | 209 | 5 | 204 | 556 | 16 | 337 | 3.08e-51 | 179 |
| MS.gene054701.t1 | AT5G51830 | 30.899 | 356 | 209 | 5 | 204 | 556 | 16 | 337 | 3.08e-51 | 179 |
| MS.gene054701.t1 | AT2G31390 | 34.219 | 301 | 173 | 5 | 251 | 548 | 35 | 313 | 4.82e-50 | 176 |
| MS.gene054701.t1 | AT3G59480 | 32.039 | 309 | 185 | 5 | 251 | 556 | 36 | 322 | 4.77e-49 | 173 |
| MS.gene054701.t1 | AT4G10260 | 31.429 | 350 | 201 | 6 | 210 | 556 | 5 | 318 | 1.74e-48 | 172 |
| MS.gene054701.t1 | AT1G06030 | 30.205 | 341 | 199 | 5 | 211 | 548 | 11 | 315 | 3.26e-47 | 168 |
| MS.gene054701.t1 | AT1G06020 | 31.894 | 301 | 180 | 5 | 251 | 548 | 36 | 314 | 7.40e-47 | 168 |
| MS.gene054701.t1 | AT1G66430 | 30.435 | 345 | 202 | 7 | 210 | 551 | 64 | 373 | 3.84e-46 | 167 |
Find 130 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAGATTGCAAAGCATTT+TGG | 0.178739 | 5.3:+32632237 | MS.gene054701:CDS |
| CGGTCAGCATTGATAGTAAA+AGG | 0.213176 | 5.3:+32630940 | MS.gene054701:CDS |
| CCTCCTCTTGTTTGTTGCTT+TGG | 0.218528 | 5.3:+32630663 | MS.gene054701:CDS |
| CTCATCTATGTCACCGATTT+CGG | 0.228080 | 5.3:-32630547 | None:intergenic |
| TCACGAGTGAAAGGGGTAAT+TGG | 0.237851 | 5.3:-32632585 | None:intergenic |
| GTCTTTGCCGACACCTTCTT+AGG | 0.255694 | 5.3:-32630169 | None:intergenic |
| AAAATTATATTCTCCTCTTT+AGG | 0.289032 | 5.3:-32630501 | None:intergenic |
| TGCATCTAGTTCTGCTGCTT+TGG | 0.313717 | 5.3:+32630428 | MS.gene054701:CDS |
| GAGAAATTTGTTAGGGCTCC+TGG | 0.317093 | 5.3:+32630783 | MS.gene054701:CDS |
| GGAAGAAGAGAAAGAAGTTA+AGG | 0.324640 | 5.3:+32630449 | MS.gene054701:CDS |
| CTCAAAATTCAGTGTAAATC+TGG | 0.327725 | 5.3:+32630043 | MS.gene054701:CDS |
| CCTTTATCAGTTATCAAATC+AGG | 0.336586 | 5.3:-32633173 | None:intergenic |
| CCTGATTTGATAACTGATAA+AGG | 0.337736 | 5.3:+32633173 | MS.gene054701:CDS |
| CACGAGTGAAAGGGGTAATT+GGG | 0.359391 | 5.3:-32632584 | None:intergenic |
| GACATTACTCCTGACCCTTA+TGG | 0.367773 | 5.3:+32633296 | MS.gene054701:CDS |
| AAACTTGCAGATGATGAATA+TGG | 0.370202 | 5.3:+32630870 | MS.gene054701:CDS |
| TATCACCTGGTTCAACTAAC+TGG | 0.371257 | 5.3:-32633362 | None:intergenic |
| CACTGATGAAGATTGGTAAA+AGG | 0.375060 | 5.3:+32630976 | MS.gene054701:CDS |
| GGAGCCCTGAGAAATTTGTT+AGG | 0.379308 | 5.3:+32630775 | MS.gene054701:CDS |
| CATAGTGGTGCAACTACTTC+AGG | 0.392247 | 5.3:-32632462 | None:intergenic |
| TCTGGAGACGGCATTGTTGC+AGG | 0.393744 | 5.3:+32632618 | MS.gene054701:CDS |
| AGAAATTTGTTAGGGCTCCT+GGG | 0.394154 | 5.3:+32630784 | MS.gene054701:CDS |
| AACAAATCAATTGTCCCTTC+TGG | 0.394435 | 5.3:-32630220 | None:intergenic |
| AGAAGGGACAATTGATTTGT+TGG | 0.395531 | 5.3:+32630222 | MS.gene054701:CDS |
| TAAACCTTCCTATGCCACTA+TGG | 0.397175 | 5.3:+32632280 | MS.gene054701:CDS |
| ACTATGGCATGAAAATCTTA+AGG | 0.402957 | 5.3:+32632479 | MS.gene054701:CDS |
| CTCACTTTCTTCCACTTCCC+AGG | 0.409532 | 5.3:+32629699 | MS.gene054701:CDS |
| GGAGCCCTAACAAATTTCTC+AGG | 0.414232 | 5.3:-32630780 | None:intergenic |
| CTGAAGTAGTTGCACCACTA+TGG | 0.424724 | 5.3:+32632463 | MS.gene054701:CDS |
| TCTATGAACGTAGTTCAACT+TGG | 0.431744 | 5.3:+32630016 | MS.gene054701:CDS |
| GGATGAGACTGACGATGGTT+TGG | 0.435291 | 5.3:+32630593 | MS.gene054701:CDS |
| ACTCGTGACATGTCAGCATC+TGG | 0.448444 | 5.3:+32632600 | MS.gene054701:CDS |
| CTTCAGGTAGGCCTGCCAAT+AGG | 0.463718 | 5.3:+32630709 | MS.gene054701:CDS |
| AGCTCGATGGTGCTGTTAGC+GGG | 0.465873 | 5.3:+32632550 | MS.gene054701:CDS |
| ACTATCAATGCTGACCGATC+GGG | 0.466215 | 5.3:-32630934 | None:intergenic |
| TACTATCAATGCTGACCGAT+CGG | 0.468391 | 5.3:-32630935 | None:intergenic |
| GACTGACGATGGTTTGGATC+TGG | 0.473146 | 5.3:+32630599 | MS.gene054701:CDS |
| TTCATGATCTATAAGCCTAT+TGG | 0.479296 | 5.3:-32630724 | None:intergenic |
| TGTGGTGTAGTAATGTATCT+TGG | 0.479747 | 5.3:-32632526 | None:intergenic |
| GCCATTGCTCTTGCTAGTCT+AGG | 0.481898 | 5.3:+32630825 | MS.gene054701:CDS |
| TTGGTGTCAAATTCTTCAGA+TGG | 0.483845 | 5.3:-32632405 | None:intergenic |
| CTATGAACGTAGTTCAACTT+GGG | 0.491056 | 5.3:+32630017 | MS.gene054701:CDS |
| TGTCAAACAATCTTCAGCAC+AGG | 0.492667 | 5.3:-32631024 | None:intergenic |
| ATCAAGTATGCAATTGATTG+TGG | 0.493118 | 5.3:+32633212 | MS.gene054701:CDS |
| GAGCCCTGAGAAATTTGTTA+GGG | 0.499725 | 5.3:+32630776 | MS.gene054701:CDS |
| GGTGGTGGTGAAGCCGAAAT+CGG | 0.500614 | 5.3:+32630534 | MS.gene054701:CDS |
| TAAGGCATCTAAACCTAAGA+AGG | 0.501445 | 5.3:+32630156 | MS.gene054701:CDS |
| GTACCATCTCCCTCCGATGA+TGG | 0.504195 | 5.3:+32630274 | MS.gene054701:CDS |
| TCGATCTCATGTGACGATCA+AGG | 0.504311 | 5.3:-32632200 | None:intergenic |
| TCAAGTATGCAATTGATTGT+GGG | 0.509821 | 5.3:+32633213 | MS.gene054701:CDS |
| GGTGTCTCACTGATGAAGAT+TGG | 0.511624 | 5.3:+32630969 | MS.gene054701:CDS |
| AGTACGCGGCTTTCCTCCAC+AGG | 0.514235 | 5.3:+32633262 | MS.gene054701:CDS |
| ATTGATAGTAAAAGGGCTAC+AGG | 0.515434 | 5.3:+32630948 | MS.gene054701:CDS |
| GAAATTTGTTAGGGCTCCTG+GGG | 0.518314 | 5.3:+32630785 | MS.gene054701:CDS |
| GATAAAGGGTACCTGGGAAG+TGG | 0.519562 | 5.3:-32629710 | None:intergenic |
| TCTTCCTGAGAGTGCCATAG+TGG | 0.525516 | 5.3:-32632294 | None:intergenic |
| TATGCCACTATGGCACTCTC+AGG | 0.527107 | 5.3:+32632290 | MS.gene054701:CDS |
| CTTTCCTCCACAGGAAGATA+CGG | 0.528005 | 5.3:+32633271 | MS.gene054701:CDS |
| CATACTTGATGCTATGCTCT+AGG | 0.530128 | 5.3:-32633199 | None:intergenic |
| CAACTACTTCAGGTTCGTAA+TGG | 0.531970 | 5.3:-32632452 | None:intergenic |
| ATAGAATGAAAGATGCCCTC+TGG | 0.535787 | 5.3:+32630754 | MS.gene054701:CDS |
| CGATGGTGCTGTTAGCGGGA+TGG | 0.537947 | 5.3:+32632554 | MS.gene054701:CDS |
| ATTGTGGGGTAATAGATCAA+TGG | 0.539254 | 5.3:+32633228 | MS.gene054701:CDS |
| AATTGTCCCTTCTGGAGACT+CGG | 0.539534 | 5.3:-32630212 | None:intergenic |
| TCTTGCTAGTCTAGGTGGCA+AGG | 0.541756 | 5.3:+32630833 | MS.gene054701:CDS |
| TGAGAGTGCCATAGTGGCAT+AGG | 0.545969 | 5.3:-32632288 | None:intergenic |
| GTAATAGATCAATGGATACT+TGG | 0.547151 | 5.3:+32633236 | MS.gene054701:CDS |
| GGTGGAAAAGAAAGCAACTA+AGG | 0.550577 | 5.3:+32630138 | MS.gene054701:CDS |
| AAATATTGACGTGTTGAAAG+AGG | 0.554016 | 5.3:+32631058 | MS.gene054701:CDS |
| GCTGACATGTCACGAGTGAA+AGG | 0.554856 | 5.3:-32632594 | None:intergenic |
| CTGACATGTCACGAGTGAAA+GGG | 0.562056 | 5.3:-32632593 | None:intergenic |
| GCCTTCCTTTACTGAAAATG+TGG | 0.563651 | 5.3:+32630569 | MS.gene054701:CDS |
| GAACCATCATCGGAGGGAGA+TGG | 0.564704 | 5.3:-32630277 | None:intergenic |
| GGTCAGCATTGATAGTAAAA+GGG | 0.566795 | 5.3:+32630941 | MS.gene054701:CDS |
| GAGCTCGATGGTGCTGTTAG+CGG | 0.567047 | 5.3:+32632549 | MS.gene054701:CDS |
| AAGAGCAATGGCAACACTAC+CGG | 0.568293 | 5.3:-32630814 | None:intergenic |
| TTTCTTCTTAGAACCATCAT+CGG | 0.571399 | 5.3:-32630287 | None:intergenic |
| CTTCTTAGAACCATCATCGG+AGG | 0.573931 | 5.3:-32630284 | None:intergenic |
| TGGATACTTGGTCGAGTACG+CGG | 0.574750 | 5.3:+32633248 | MS.gene054701:CDS |
| AAGTGGAAGAAAGTGAGCAA+GGG | 0.575285 | 5.3:-32629693 | None:intergenic |
| TGTGCAGGTGTAACTTGACT+TGG | 0.580944 | 5.3:+32629978 | MS.gene054701:intron |
| TGATCTATAAGCCTATTGGC+AGG | 0.586380 | 5.3:-32630720 | None:intergenic |
| GACATGTCAGCATCTGGAGA+CGG | 0.587386 | 5.3:+32632606 | MS.gene054701:CDS |
| TTCTTAGAACCATCATCGGA+GGG | 0.590029 | 5.3:-32630283 | None:intergenic |
| TTCCTTTACTGAAAATGTGG+AGG | 0.597118 | 5.3:+32630572 | MS.gene054701:CDS |
| GTCAAACAATCTTCAGCACA+GGG | 0.597382 | 5.3:-32631023 | None:intergenic |
| CCAAAGCAACAAACAAGAGG+AGG | 0.601556 | 5.3:-32630663 | None:intergenic |
| CTGGTCATGTTGCAATGGCT+AGG | 0.601708 | 5.3:+32630062 | MS.gene054701:CDS |
| TCGAAAGCCGAGTCTCCAGA+AGG | 0.601773 | 5.3:+32630205 | MS.gene054701:CDS |
| CAAGTATGCAATTGATTGTG+GGG | 0.603065 | 5.3:+32633214 | MS.gene054701:CDS |
| GCTAGGAAGAAAGCTTCACT+AGG | 0.607054 | 5.3:+32630079 | MS.gene054701:CDS |
| GCAAGGGAAAGAGACGACAT+TGG | 0.610392 | 5.3:-32629677 | None:intergenic |
| CAAGAACTAGAGTTCCTATG+TGG | 0.612087 | 5.3:+32632375 | MS.gene054701:CDS |
| CAGATGGTGTTATTCCACAT+AGG | 0.614200 | 5.3:-32632389 | None:intergenic |
| ATCTAAACCTAAGAAGGTGT+CGG | 0.614511 | 5.3:+32630162 | MS.gene054701:CDS |
| ATTGCTCTTGCTAGTCTAGG+TGG | 0.617176 | 5.3:+32630828 | MS.gene054701:CDS |
| GAGGACATAAGTGATACTTA+CGG | 0.618077 | 5.3:+32630636 | MS.gene054701:CDS |
| TCTCATGTGACGATCAAGGA+GGG | 0.619151 | 5.3:-32632196 | None:intergenic |
| AAGGCGAAGGAAACCTAAAG+AGG | 0.620452 | 5.3:+32630488 | MS.gene054701:CDS |
| AAATTTCTCAGGGCTCCAGA+GGG | 0.621942 | 5.3:-32630769 | None:intergenic |
| CAAATTTCTCAGGGCTCCAG+AGG | 0.624526 | 5.3:-32630770 | None:intergenic |
| ACCTAGACTAGCAAGAGCAA+TGG | 0.625002 | 5.3:-32630826 | None:intergenic |
| CTATTGGCAGGCCTACCTGA+AGG | 0.625259 | 5.3:-32630708 | None:intergenic |
| AGACGTTCATTCAGCAAGTG+TGG | 0.625558 | 5.3:+32632322 | MS.gene054701:CDS |
| GAGCCCTAACAAATTTCTCA+GGG | 0.627364 | 5.3:-32630779 | None:intergenic |
| GAAGTGGAAGAAAGTGAGCA+AGG | 0.632203 | 5.3:-32629694 | None:intergenic |
| CGAAAGCCGAGTCTCCAGAA+GGG | 0.633282 | 5.3:+32630206 | MS.gene054701:CDS |
| ATGTCCTCCGTATCTTCCTG+TGG | 0.633557 | 5.3:-32633278 | None:intergenic |
| GTAATGGACAAACTTTGACC+TGG | 0.633703 | 5.3:-32632436 | None:intergenic |
| GCTCCAAAGCAACAAACAAG+AGG | 0.633915 | 5.3:-32630666 | None:intergenic |
| AGTGCCATAGTGGCATAGGA+AGG | 0.633942 | 5.3:-32632284 | None:intergenic |
| TAGTGAAAATGAACCTGTGG+TGG | 0.634519 | 5.3:+32630120 | MS.gene054701:CDS |
| GGGCATCTTTCATTCTATCG+TGG | 0.641992 | 5.3:-32630749 | None:intergenic |
| TATGAACGTAGTTCAACTTG+GGG | 0.642217 | 5.3:+32630018 | MS.gene054701:CDS |
| ACGAGTGAAAGGGGTAATTG+GGG | 0.647030 | 5.3:-32632583 | None:intergenic |
| CGATTACAGAAACAGAGTAT+CGG | 0.647080 | 5.3:+32633327 | MS.gene054701:CDS |
| ACATAAGTGATACTTACGGT+TGG | 0.647130 | 5.3:+32630640 | MS.gene054701:CDS |
| TCCTCCGTATCTTCCTGTGG+AGG | 0.647479 | 5.3:-32633275 | None:intergenic |
| TAAATCTGGTCATGTTGCAA+TGG | 0.648584 | 5.3:+32630057 | MS.gene054701:CDS |
| TGACATGTCACGAGTGAAAG+GGG | 0.649548 | 5.3:-32632592 | None:intergenic |
| TGGTGCTGTTAGCGGGATGG+AGG | 0.653175 | 5.3:+32632557 | MS.gene054701:CDS |
| AAATTTGTTAGGGCTCCTGG+GGG | 0.655673 | 5.3:+32630786 | MS.gene054701:CDS |
| AAATAATGTTCAAACCCGAT+CGG | 0.661932 | 5.3:+32630920 | MS.gene054701:CDS |
| TACTACACCACAGAGCTCGA+TGG | 0.665232 | 5.3:+32632537 | MS.gene054701:CDS |
| ACCTAGTGAAAATGAACCTG+TGG | 0.687100 | 5.3:+32630117 | MS.gene054701:CDS |
| TCCTCCACAGGAAGATACGG+AGG | 0.688149 | 5.3:+32633274 | MS.gene054701:CDS |
| AACAGCACCATCGAGCTCTG+TGG | 0.705418 | 5.3:-32632544 | None:intergenic |
| ATGAACGTAGTTCAACTTGG+GGG | 0.712399 | 5.3:+32630019 | MS.gene054701:CDS |
| ATCTCATGTGACGATCAAGG+AGG | 0.730500 | 5.3:-32632197 | None:intergenic |
| GTGGAGGATGAGACTGACGA+TGG | 0.806142 | 5.3:+32630588 | MS.gene054701:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATAATTCTTCAATAA+AGG | + | chr5.3:32629833-32629852 | MS.gene054701:intron | 10.0% |
| !! | AATTAGTAGTATTATAATAA+AGG | + | chr5.3:32631485-32631504 | MS.gene054701:intron | 10.0% |
| !! | ATTAGTAGTATTATAATAAA+GGG | + | chr5.3:32631486-32631505 | MS.gene054701:intron | 10.0% |
| !! | ATTTCATTAAAAATCAAAAT+TGG | - | chr5.3:32629781-32629800 | None:intergenic | 10.0% |
| !! | CACATATATATTAAAAAAAT+AGG | + | chr5.3:32631371-32631390 | MS.gene054701:intron | 10.0% |
| !!! | AATTTTGATTTTTAATGAAA+TGG | + | chr5.3:32629780-32629799 | MS.gene054701:intron | 10.0% |
| !!! | ATTTTGATTTTTAATGAAAT+GGG | + | chr5.3:32629781-32629800 | MS.gene054701:intron | 10.0% |
| !! | ATAGATTTCAAGAAAAAAAT+AGG | - | chr5.3:32631866-32631885 | None:intergenic | 15.0% |
| !! | ATATATGAGATGATAAATTA+GGG | - | chr5.3:32631464-32631483 | None:intergenic | 15.0% |
| !! | ATTTCAACATTATTTAACAA+GGG | - | chr5.3:32632707-32632726 | None:intergenic | 15.0% |
| !! | TAGATTTCAAGAAAAAAATA+GGG | - | chr5.3:32631865-32631884 | None:intergenic | 15.0% |
| !! | TATATATGAGATGATAAATT+AGG | - | chr5.3:32631465-32631484 | None:intergenic | 15.0% |
| !!! | AATATAATTTTAGAGGATAA+AGG | + | chr5.3:32630513-32630532 | MS.gene054701:CDS | 15.0% |
| !!! | ATGTATCTATTAATTTGAAA+TGG | + | chr5.3:32631531-32631550 | MS.gene054701:intron | 15.0% |
| !!! | ATTATAATAAAGGGTATATT+TGG | + | chr5.3:32631495-32631514 | MS.gene054701:intron | 15.0% |
| !!! | TGTATCTATTAATTTGAAAT+GGG | + | chr5.3:32631532-32631551 | MS.gene054701:intron | 15.0% |
| !! | AAAATTATATTCTCCTCTTT+AGG | - | chr5.3:32630504-32630523 | None:intergenic | 20.0% |
| !! | AAGAATCATTTAATATGTGA+TGG | + | chr5.3:32632748-32632767 | MS.gene054701:intron | 20.0% |
| !! | AATCCATTTGAAAAACATAA+AGG | + | chr5.3:32632678-32632697 | MS.gene054701:intron | 20.0% |
| !! | ATATATGTGAAAATGATGAA+AGG | - | chr5.3:32631360-32631379 | None:intergenic | 20.0% |
| !! | GATTTCAACATTATTTAACA+AGG | - | chr5.3:32632708-32632727 | None:intergenic | 20.0% |
| !! | TACTTAACAGTTAACATATA+AGG | + | chr5.3:32632010-32632029 | MS.gene054701:intron | 20.0% |
| !! | TTAATAGACTCAATAACATT+TGG | - | chr5.3:32632131-32632150 | None:intergenic | 20.0% |
| !!! | ATTTTTGCTATCTTATTTTC+TGG | + | chr5.3:32632830-32632849 | MS.gene054701:intron | 20.0% |
| !!! | TTTATGTTTTTCAAATGGAT+TGG | - | chr5.3:32632679-32632698 | None:intergenic | 20.0% |
| !!! | TTTCCTTTATGTTTTTCAAA+TGG | - | chr5.3:32632684-32632703 | None:intergenic | 20.0% |
| !!! | TTTCCTTTCATAGTAATTTT+AGG | + | chr5.3:32632927-32632946 | MS.gene054701:intron | 20.0% |
| !!! | TTTTTAAGACTACAGATAAA+GGG | - | chr5.3:32629727-32629746 | None:intergenic | 20.0% |
| !!! | TTTTTTAAGACTACAGATAA+AGG | - | chr5.3:32629728-32629747 | None:intergenic | 20.0% |
| ! | AATGATTCTTCTCATAATAG+TGG | - | chr5.3:32632738-32632757 | None:intergenic | 25.0% |
| ! | ATGATTCTTCTCATAATAGT+GGG | - | chr5.3:32632737-32632756 | None:intergenic | 25.0% |
| ! | ATGCATACATTTAAGCAAAA+AGG | + | chr5.3:32631678-32631697 | MS.gene054701:intron | 25.0% |
| ! | CAAATGATTATTGTGTGAAA+GGG | - | chr5.3:32631805-32631824 | None:intergenic | 25.0% |
| ! | CTAAGATGTGCTTATAATTA+GGG | + | chr5.3:32631583-32631602 | MS.gene054701:intron | 25.0% |
| ! | TAAGATGTGCTTATAATTAG+GGG | + | chr5.3:32631584-32631603 | MS.gene054701:intron | 25.0% |
| ! | TAGACACATTTGTATACAAA+AGG | - | chr5.3:32631440-32631459 | None:intergenic | 25.0% |
| ! | TCTCCTAAAATTACTATGAA+AGG | - | chr5.3:32632933-32632952 | None:intergenic | 25.0% |
| !! | AACATGAATGATTTTGTAGA+TGG | + | chr5.3:32631705-32631724 | MS.gene054701:intron | 25.0% |
| !! | AGAGGAGAATATAATTTTAG+AGG | + | chr5.3:32630506-32630525 | MS.gene054701:CDS | 25.0% |
| !! | TCTAAGATGTGCTTATAATT+AGG | + | chr5.3:32631582-32631601 | MS.gene054701:intron | 25.0% |
| !! | TTCACTAAATAGCTTAGTTT+TGG | - | chr5.3:32631756-32631775 | None:intergenic | 25.0% |
| !! | TTGTTAGAATGATGATGAAA+GGG | - | chr5.3:32631272-32631291 | None:intergenic | 25.0% |
| !! | TTTGTTAGAATGATGATGAA+AGG | - | chr5.3:32631273-32631292 | None:intergenic | 25.0% |
| !!! | AATTTTGAAGTGAGTATGTT+GGG | + | chr5.3:32629871-32629890 | MS.gene054701:intron | 25.0% |
| !!! | ATAATTTTAGAGGATAAAGG+TGG | + | chr5.3:32630516-32630535 | MS.gene054701:CDS | 25.0% |
| !!! | TAATCGATTTTATGCCATAA+GGG | - | chr5.3:32633313-32633332 | None:intergenic | 25.0% |
| !!! | TCACTAAATAGCTTAGTTTT+GGG | - | chr5.3:32631755-32631774 | None:intergenic | 25.0% |
| AAACCAAAAAGTAATGCTGT+TGG | + | chr5.3:32631964-32631983 | MS.gene054701:intron | 30.0% | |
| AAACTTGCAGATGATGAATA+TGG | + | chr5.3:32630870-32630889 | MS.gene054701:CDS | 30.0% | |
| AAATAATGTTCAAACCCGAT+CGG | + | chr5.3:32630920-32630939 | MS.gene054701:CDS | 30.0% | |
| AAATATTGACGTGTTGAAAG+AGG | + | chr5.3:32631058-32631077 | MS.gene054701:CDS | 30.0% | |
| ACTATGGCATGAAAATCTTA+AGG | + | chr5.3:32632479-32632498 | MS.gene054701:CDS | 30.0% | |
| AGACAATATCACGATTGAAT+CGG | + | chr5.3:32632950-32632969 | MS.gene054701:intron | 30.0% | |
| AGGAAGTGAAAAAAGTTACA+AGG | + | chr5.3:32630469-32630488 | MS.gene054701:CDS | 30.0% | |
| ATCAAGTATGCAATTGATTG+TGG | + | chr5.3:32633212-32633231 | MS.gene054701:CDS | 30.0% | |
| CCAAATGATTATTGTGTGAA+AGG | - | chr5.3:32631806-32631825 | None:intergenic | 30.0% | |
| CCTTTATCAGTTATCAAATC+AGG | - | chr5.3:32633176-32633195 | None:intergenic | 30.0% | |
| CCTTTCACACAATAATCATT+TGG | + | chr5.3:32631803-32631822 | MS.gene054701:intron | 30.0% | |
| CTATCATTTGTTTAGAAACG+TGG | + | chr5.3:32631882-32631901 | MS.gene054701:intron | 30.0% | |
| CTCAAAATTCAGTGTAAATC+TGG | + | chr5.3:32630043-32630062 | MS.gene054701:CDS | 30.0% | |
| GTAATAGATCAATGGATACT+TGG | + | chr5.3:32633236-32633255 | MS.gene054701:CDS | 30.0% | |
| GTGTTAGTTAAACGTTGATA+TGG | + | chr5.3:32630397-32630416 | MS.gene054701:intron | 30.0% | |
| TCAAGTATGCAATTGATTGT+GGG | + | chr5.3:32633213-32633232 | MS.gene054701:CDS | 30.0% | |
| TTAGTGTATAATTCTTGTGC+TGG | + | chr5.3:32629921-32629940 | MS.gene054701:intron | 30.0% | |
| TTCATGATCTATAAGCCTAT+TGG | - | chr5.3:32630727-32630746 | None:intergenic | 30.0% | |
| TTGATTGTATGTCAGATTCT+CGG | + | chr5.3:32632042-32632061 | MS.gene054701:intron | 30.0% | |
| TTGGATCTGGAAAAATATGA+TGG | + | chr5.3:32630612-32630631 | MS.gene054701:CDS | 30.0% | |
| TTTCTTCTTAGAACCATCAT+CGG | - | chr5.3:32630290-32630309 | None:intergenic | 30.0% | |
| ! | ATAAGTTCTAGTCTCATCAT+TGG | + | chr5.3:32631148-32631167 | MS.gene054701:intron | 30.0% |
| ! | CCTGATTTGATAACTGATAA+AGG | + | chr5.3:32633173-32633192 | MS.gene054701:CDS | 30.0% |
| ! | TTAAGATTTTCATGCCATAG+TGG | - | chr5.3:32632480-32632499 | None:intergenic | 30.0% |
| ! | TTTTAGTAACATGCACAGAA+TGG | - | chr5.3:32631414-32631433 | None:intergenic | 30.0% |
| !! | ATCAAGATTGCAAAGCATTT+TGG | + | chr5.3:32632237-32632256 | MS.gene054701:CDS | 30.0% |
| !! | GTAATCGATTTTATGCCATA+AGG | - | chr5.3:32633314-32633333 | None:intergenic | 30.0% |
| !!! | AAGGTTTTGTTTGTGACTAA+TGG | + | chr5.3:32632498-32632517 | MS.gene054701:CDS | 30.0% |
| !!! | CAATTTTGAAGTGAGTATGT+TGG | + | chr5.3:32629870-32629889 | MS.gene054701:intron | 30.0% |
| !!! | CAGCATTACTTTTTGGTTTA+TGG | - | chr5.3:32631963-32631982 | None:intergenic | 30.0% |
| AACAAATCAATTGTCCCTTC+TGG | - | chr5.3:32630223-32630242 | None:intergenic | 35.0% | |
| AACACGAAAGACTCGAAAAA+AGG | + | chr5.3:32630309-32630328 | MS.gene054701:CDS | 35.0% | |
| AACGATGTTGTCTATTGCAA+TGG | + | chr5.3:32631624-32631643 | MS.gene054701:intron | 35.0% | |
| AAGGAGCTTATGAATAGAGA+TGG | - | chr5.3:32631341-32631360 | None:intergenic | 35.0% | |
| ACACGAAAGACTCGAAAAAA+GGG | + | chr5.3:32630310-32630329 | MS.gene054701:CDS | 35.0% | |
| ACATAAGTGATACTTACGGT+TGG | + | chr5.3:32630640-32630659 | MS.gene054701:CDS | 35.0% | |
| ATTAAGAACACATCTCATGC+AGG | + | chr5.3:32632146-32632165 | MS.gene054701:intron | 35.0% | |
| ATTGTGGGGTAATAGATCAA+TGG | + | chr5.3:32633228-32633247 | MS.gene054701:CDS | 35.0% | |
| CAAGTATGCAATTGATTGTG+GGG | + | chr5.3:32633214-32633233 | MS.gene054701:CDS | 35.0% | |
| CACTGATGAAGATTGGTAAA+AGG | + | chr5.3:32630976-32630995 | MS.gene054701:CDS | 35.0% | |
| CGATTACAGAAACAGAGTAT+CGG | + | chr5.3:32633327-32633346 | MS.gene054701:CDS | 35.0% | |
| CTATGAACGTAGTTCAACTT+GGG | + | chr5.3:32630017-32630036 | MS.gene054701:CDS | 35.0% | |
| CTTTGTTGCATTGCTTCATA+AGG | - | chr5.3:32632781-32632800 | None:intergenic | 35.0% | |
| GACAATAAGGATTGAACCTT+AGG | + | chr5.3:32631906-32631925 | MS.gene054701:intron | 35.0% | |
| GAGGACATAAGTGATACTTA+CGG | + | chr5.3:32630636-32630655 | MS.gene054701:CDS | 35.0% | |
| GATGAAAGGGCTTACAAATA+CGG | - | chr5.3:32631259-32631278 | None:intergenic | 35.0% | |
| GCTTAATGAATGCCATAACA+AGG | + | chr5.3:32632972-32632991 | MS.gene054701:intron | 35.0% | |
| GGAAGAAGAGAAAGAAGTTA+AGG | + | chr5.3:32630449-32630468 | MS.gene054701:CDS | 35.0% | |
| GTAATATAAGTCCTGAGTGT+TGG | - | chr5.3:32633000-32633019 | None:intergenic | 35.0% | |
| TAAATCTGGTCATGTTGCAA+TGG | + | chr5.3:32630057-32630076 | MS.gene054701:CDS | 35.0% | |
| TATGAACGTAGTTCAACTTG+GGG | + | chr5.3:32630018-32630037 | MS.gene054701:CDS | 35.0% | |
| TCTATGAACGTAGTTCAACT+TGG | + | chr5.3:32630016-32630035 | MS.gene054701:CDS | 35.0% | |
| TGAAAAAAGTTACAAGGCGA+AGG | + | chr5.3:32630475-32630494 | MS.gene054701:CDS | 35.0% | |
| TGTGGTGTAGTAATGTATCT+TGG | - | chr5.3:32632529-32632548 | None:intergenic | 35.0% | |
| TTCCTTTACTGAAAATGTGG+AGG | + | chr5.3:32630572-32630591 | MS.gene054701:CDS | 35.0% | |
| ! | ATCCTCCACATTTTCAGTAA+AGG | - | chr5.3:32630577-32630596 | None:intergenic | 35.0% |
| ! | ATCTAAACCTAAGAAGGTGT+CGG | + | chr5.3:32630162-32630181 | MS.gene054701:CDS | 35.0% |
| ! | ATTGATAGTAAAAGGGCTAC+AGG | + | chr5.3:32630948-32630967 | MS.gene054701:CDS | 35.0% |
| ! | TAAGGCATCTAAACCTAAGA+AGG | + | chr5.3:32630156-32630175 | MS.gene054701:CDS | 35.0% |
| ! | TCCACATTTTCAGTAAAGGA+AGG | - | chr5.3:32630573-32630592 | None:intergenic | 35.0% |
| ! | TCTGGAAAAATATGATGGAG+AGG | + | chr5.3:32630617-32630636 | MS.gene054701:CDS | 35.0% |
| ! | TTGGTGATATAGCAGCATTA+TGG | + | chr5.3:32631167-32631186 | MS.gene054701:intron | 35.0% |
| !! | AGAAGGGACAATTGATTTGT+TGG | + | chr5.3:32630222-32630241 | MS.gene054701:CDS | 35.0% |
| !! | ATTTTAGAGGATAAAGGTGG+TGG | + | chr5.3:32630519-32630538 | MS.gene054701:CDS | 35.0% |
| !! | CAACCAACAGCATTACTTTT+TGG | - | chr5.3:32631970-32631989 | None:intergenic | 35.0% |
| !! | GGTCAGCATTGATAGTAAAA+GGG | + | chr5.3:32630941-32630960 | MS.gene054701:CDS | 35.0% |
| !! | TGAAACATCTCTCTAAAGCT+AGG | + | chr5.3:32633091-32633110 | MS.gene054701:intron | 35.0% |
| !! | TTGGGTTTCAGTTCAAGTTT+TGG | + | chr5.3:32629889-32629908 | MS.gene054701:intron | 35.0% |
| !! | TTGGTGTCAAATTCTTCAGA+TGG | - | chr5.3:32632408-32632427 | None:intergenic | 35.0% |
| !!! | CTGTTTTGTTTTAGCTGCTT+GGG | + | chr5.3:32632091-32632110 | MS.gene054701:intron | 35.0% |
| !!! | TAGCTTAGTTTTGGGATAGT+TGG | - | chr5.3:32631747-32631766 | None:intergenic | 35.0% |
| !!! | TCTGTTTTGTTTTAGCTGCT+TGG | + | chr5.3:32632090-32632109 | MS.gene054701:intron | 35.0% |
| AAGTGGAAGAAAGTGAGCAA+GGG | - | chr5.3:32629696-32629715 | None:intergenic | 40.0% | |
| ACCTAGTGAAAATGAACCTG+TGG | + | chr5.3:32630117-32630136 | MS.gene054701:CDS | 40.0% | |
| ATAGAATGAAAGATGCCCTC+TGG | + | chr5.3:32630754-32630773 | MS.gene054701:CDS | 40.0% | |
| ATGAACGTAGTTCAACTTGG+GGG | + | chr5.3:32630019-32630038 | MS.gene054701:CDS | 40.0% | |
| CAACTTGGACATAGAAGCTT+TGG | + | chr5.3:32631930-32631949 | MS.gene054701:intron | 40.0% | |
| CAAGAACTAGAGTTCCTATG+TGG | + | chr5.3:32632375-32632394 | MS.gene054701:CDS | 40.0% | |
| CATACTTGATGCTATGCTCT+AGG | - | chr5.3:32633202-32633221 | None:intergenic | 40.0% | |
| CCTTGCCAACAAAATCCAAT+CGG | - | chr5.3:32632864-32632883 | None:intergenic | 40.0% | |
| GAAGCAATGCAACAAAGTAC+TGG | + | chr5.3:32632784-32632803 | MS.gene054701:intron | 40.0% | |
| GAGCCCTAACAAATTTCTCA+GGG | - | chr5.3:32630782-32630801 | None:intergenic | 40.0% | |
| GAGCTTATGAATAGAGATGG+AGG | - | chr5.3:32631338-32631357 | None:intergenic | 40.0% | |
| GATTGAACCTTAGGACAACT+TGG | + | chr5.3:32631915-32631934 | MS.gene054701:intron | 40.0% | |
| GCCTTCCTTTACTGAAAATG+TGG | + | chr5.3:32630569-32630588 | MS.gene054701:CDS | 40.0% | |
| GGTGGAAAAGAAAGCAACTA+AGG | + | chr5.3:32630138-32630157 | MS.gene054701:CDS | 40.0% | |
| GTCAAACAATCTTCAGCACA+GGG | - | chr5.3:32631026-32631045 | None:intergenic | 40.0% | |
| GTTGGTTGAAAGCTCATGAA+TGG | + | chr5.3:32631982-32632001 | MS.gene054701:intron | 40.0% | |
| TAAACCTTCCTATGCCACTA+TGG | + | chr5.3:32632280-32632299 | MS.gene054701:CDS | 40.0% | |
| TACTATCAATGCTGACCGAT+CGG | - | chr5.3:32630938-32630957 | None:intergenic | 40.0% | |
| TAGTGAAAATGAACCTGTGG+TGG | + | chr5.3:32630120-32630139 | MS.gene054701:CDS | 40.0% | |
| TCTATGTCCAAGTTGTCCTA+AGG | - | chr5.3:32631925-32631944 | None:intergenic | 40.0% | |
| TCTTGTCTTTGCAATTGTGC+AGG | + | chr5.3:32629963-32629982 | MS.gene054701:intron | 40.0% | |
| TGATCTATAAGCCTATTGGC+AGG | - | chr5.3:32630723-32630742 | None:intergenic | 40.0% | |
| TGTCAAACAATCTTCAGCAC+AGG | - | chr5.3:32631027-32631046 | None:intergenic | 40.0% | |
| TTAGAAACGTGGCGACAATA+AGG | + | chr5.3:32631893-32631912 | MS.gene054701:intron | 40.0% | |
| TTCTTAGAACCATCATCGGA+GGG | - | chr5.3:32630286-32630305 | None:intergenic | 40.0% | |
| TTGACACCAAAAACAATGCC+AGG | + | chr5.3:32632418-32632437 | MS.gene054701:CDS | 40.0% | |
| TTGACGTGTTGAAAGAGGTA+CGG | + | chr5.3:32631063-32631082 | MS.gene054701:intron | 40.0% | |
| ! | ACCACAGGTTCATTTTCACT+AGG | - | chr5.3:32630121-32630140 | None:intergenic | 40.0% |
| ! | ATCAGCCGATTGGATTTTGT+TGG | + | chr5.3:32632856-32632875 | MS.gene054701:intron | 40.0% |
| ! | CAACTACTTCAGGTTCGTAA+TGG | - | chr5.3:32632455-32632474 | None:intergenic | 40.0% |
| ! | CTTTGACCTGGCATTGTTTT+TGG | - | chr5.3:32632427-32632446 | None:intergenic | 40.0% |
| ! | GATTTTATGCCATAAGGGTC+AGG | - | chr5.3:32633308-32633327 | None:intergenic | 40.0% |
| ! | TTTCTGGAAAATCAGCCGAT+TGG | + | chr5.3:32632846-32632865 | MS.gene054701:intron | 40.0% |
| !! | ACTACAGATAAAGGGTACCT+GGG | - | chr5.3:32629719-32629738 | None:intergenic | 40.0% |
| !! | AGAAATTTGTTAGGGCTCCT+GGG | + | chr5.3:32630784-32630803 | MS.gene054701:CDS | 40.0% |
| !! | CAGATGGTGTTATTCCACAT+AGG | - | chr5.3:32632392-32632411 | None:intergenic | 40.0% |
| !! | CGGTCAGCATTGATAGTAAA+AGG | + | chr5.3:32630940-32630959 | MS.gene054701:CDS | 40.0% |
| !! | CTCATCTATGTCACCGATTT+CGG | - | chr5.3:32630550-32630569 | None:intergenic | 40.0% |
| !! | GAGCCCTGAGAAATTTGTTA+GGG | + | chr5.3:32630776-32630795 | MS.gene054701:CDS | 40.0% |
| !! | GATTGCAAAGCATTTTGGAG+CGG | + | chr5.3:32632242-32632261 | MS.gene054701:CDS | 40.0% |
| !! | GTAATGGACAAACTTTGACC+TGG | - | chr5.3:32632439-32632458 | None:intergenic | 40.0% |
| AAATTTCTCAGGGCTCCAGA+GGG | - | chr5.3:32630772-32630791 | None:intergenic | 45.0% | |
| AAGAGCAATGGCAACACTAC+CGG | - | chr5.3:32630817-32630836 | None:intergenic | 45.0% | |
| AAGGCGAAGGAAACCTAAAG+AGG | + | chr5.3:32630488-32630507 | MS.gene054701:CDS | 45.0% | |
| ACCTAGACTAGCAAGAGCAA+TGG | - | chr5.3:32630829-32630848 | None:intergenic | 45.0% | |
| ACGAGTGAAAGGGGTAATTG+GGG | - | chr5.3:32632586-32632605 | None:intergenic | 45.0% | |
| ACTATCAATGCTGACCGATC+GGG | - | chr5.3:32630937-32630956 | None:intergenic | 45.0% | |
| AGACGTTCATTCAGCAAGTG+TGG | + | chr5.3:32632322-32632341 | MS.gene054701:CDS | 45.0% | |
| ATAACAAGGAGCCAACACTC+AGG | + | chr5.3:32632986-32633005 | MS.gene054701:intron | 45.0% | |
| ATCTCATGTGACGATCAAGG+AGG | - | chr5.3:32632200-32632219 | None:intergenic | 45.0% | |
| CACGAGTGAAAGGGGTAATT+GGG | - | chr5.3:32632587-32632606 | None:intergenic | 45.0% | |
| CATAGTGGTGCAACTACTTC+AGG | - | chr5.3:32632465-32632484 | None:intergenic | 45.0% | |
| CCAAAGCAACAAACAAGAGG+AGG | - | chr5.3:32630666-32630685 | None:intergenic | 45.0% | |
| CTGAAGTAGTTGCACCACTA+TGG | + | chr5.3:32632463-32632482 | MS.gene054701:CDS | 45.0% | |
| CTGACATGTCACGAGTGAAA+GGG | - | chr5.3:32632596-32632615 | None:intergenic | 45.0% | |
| CTTCTTAGAACCATCATCGG+AGG | - | chr5.3:32630287-32630306 | None:intergenic | 45.0% | |
| CTTTCCTCCACAGGAAGATA+CGG | + | chr5.3:32633271-32633290 | MS.gene054701:CDS | 45.0% | |
| GAAGTGGAAGAAAGTGAGCA+AGG | - | chr5.3:32629697-32629716 | None:intergenic | 45.0% | |
| GACATTACTCCTGACCCTTA+TGG | + | chr5.3:32633296-32633315 | MS.gene054701:CDS | 45.0% | |
| GCTAGGAAGAAAGCTTCACT+AGG | + | chr5.3:32630079-32630098 | MS.gene054701:CDS | 45.0% | |
| GCTCCAAAGCAACAAACAAG+AGG | - | chr5.3:32630669-32630688 | None:intergenic | 45.0% | |
| GGAGCCCTAACAAATTTCTC+AGG | - | chr5.3:32630783-32630802 | None:intergenic | 45.0% | |
| GGGCATCTTTCATTCTATCG+TGG | - | chr5.3:32630752-32630771 | None:intergenic | 45.0% | |
| GGTGTCTCACTGATGAAGAT+TGG | + | chr5.3:32630969-32630988 | MS.gene054701:CDS | 45.0% | |
| TCACGAGTGAAAGGGGTAAT+TGG | - | chr5.3:32632588-32632607 | None:intergenic | 45.0% | |
| TCGATCTCATGTGACGATCA+AGG | - | chr5.3:32632203-32632222 | None:intergenic | 45.0% | |
| TCTCATGTGACGATCAAGGA+GGG | - | chr5.3:32632199-32632218 | None:intergenic | 45.0% | |
| TGACATGTCACGAGTGAAAG+GGG | - | chr5.3:32632595-32632614 | None:intergenic | 45.0% | |
| TGTGCAGGTGTAACTTGACT+TGG | + | chr5.3:32629978-32629997 | MS.gene054701:intron | 45.0% | |
| ! | AATTGTCCCTTCTGGAGACT+CGG | - | chr5.3:32630215-32630234 | None:intergenic | 45.0% |
| ! | ATGCTTTTGTGCCTTCAGGT+AGG | + | chr5.3:32630697-32630716 | MS.gene054701:CDS | 45.0% |
| ! | ATTGCTCTTGCTAGTCTAGG+TGG | + | chr5.3:32630828-32630847 | MS.gene054701:CDS | 45.0% |
| ! | CAACATGCTTTTGTGCCTTC+AGG | + | chr5.3:32630693-32630712 | MS.gene054701:CDS | 45.0% |
| ! | CCGATTGGATTTTGTTGGCA+AGG | + | chr5.3:32632861-32632880 | MS.gene054701:intron | 45.0% |
| ! | CCTCCTCTTGTTTGTTGCTT+TGG | + | chr5.3:32630663-32630682 | MS.gene054701:CDS | 45.0% |
| ! | GGAGCCCTGAGAAATTTGTT+AGG | + | chr5.3:32630775-32630794 | MS.gene054701:CDS | 45.0% |
| !! | AAATTTGTTAGGGCTCCTGG+GGG | + | chr5.3:32630786-32630805 | MS.gene054701:CDS | 45.0% |
| !! | GAAATTTGTTAGGGCTCCTG+GGG | + | chr5.3:32630785-32630804 | MS.gene054701:CDS | 45.0% |
| !! | GACTACAGATAAAGGGTACC+TGG | - | chr5.3:32629720-32629739 | None:intergenic | 45.0% |
| !! | GAGAAATTTGTTAGGGCTCC+TGG | + | chr5.3:32630783-32630802 | MS.gene054701:CDS | 45.0% |
| !! | GTTGCTTTCTTTTCCACCAC+AGG | - | chr5.3:32630136-32630155 | None:intergenic | 45.0% |
| !! | TGAGTGTTGGCTCCTTGTTA+TGG | - | chr5.3:32632987-32633006 | None:intergenic | 45.0% |
| !! | TGCATCTAGTTCTGCTGCTT+TGG | + | chr5.3:32630428-32630447 | MS.gene054701:CDS | 45.0% |
| !!! | AGGTGGCAAGGTTGCTTTTA+TGG | + | chr5.3:32630845-32630864 | MS.gene054701:CDS | 45.0% |
| !!! | GGTGGCAAGGTTGCTTTTAT+GGG | + | chr5.3:32630846-32630865 | MS.gene054701:CDS | 45.0% |
| ACTCGTGACATGTCAGCATC+TGG | + | chr5.3:32632600-32632619 | MS.gene054701:CDS | 50.0% | |
| AGTGCCATAGTGGCATAGGA+AGG | - | chr5.3:32632287-32632306 | None:intergenic | 50.0% | |
| ATGTCCTCCGTATCTTCCTG+TGG | - | chr5.3:32633281-32633300 | None:intergenic | 50.0% | |
| CAAATTTCTCAGGGCTCCAG+AGG | - | chr5.3:32630773-32630792 | None:intergenic | 50.0% | |
| CTCACTTTCTTCCACTTCCC+AGG | + | chr5.3:32629699-32629718 | MS.gene054701:CDS | 50.0% | |
| CTGGTCATGTTGCAATGGCT+AGG | + | chr5.3:32630062-32630081 | MS.gene054701:CDS | 50.0% | |
| GACATGTCAGCATCTGGAGA+CGG | + | chr5.3:32632606-32632625 | MS.gene054701:CDS | 50.0% | |
| GCTGACATGTCACGAGTGAA+AGG | - | chr5.3:32632597-32632616 | None:intergenic | 50.0% | |
| GGATGAGACTGACGATGGTT+TGG | + | chr5.3:32630593-32630612 | MS.gene054701:CDS | 50.0% | |
| GGGCTTACAAATACGGACAG+AGG | - | chr5.3:32631252-32631271 | None:intergenic | 50.0% | |
| GTCTTTGCCGACACCTTCTT+AGG | - | chr5.3:32630172-32630191 | None:intergenic | 50.0% | |
| TACTACACCACAGAGCTCGA+TGG | + | chr5.3:32632537-32632556 | MS.gene054701:CDS | 50.0% | |
| TATGCCACTATGGCACTCTC+AGG | + | chr5.3:32632290-32632309 | MS.gene054701:CDS | 50.0% | |
| TGGATACTTGGTCGAGTACG+CGG | + | chr5.3:32633248-32633267 | MS.gene054701:CDS | 50.0% | |
| ! | GACTGACGATGGTTTGGATC+TGG | + | chr5.3:32630599-32630618 | MS.gene054701:CDS | 50.0% |
| ! | GCCATTGCTCTTGCTAGTCT+AGG | + | chr5.3:32630825-32630844 | MS.gene054701:CDS | 50.0% |
| ! | TCTTGCTAGTCTAGGTGGCA+AGG | + | chr5.3:32630833-32630852 | MS.gene054701:CDS | 50.0% |
| !! | GATAAAGGGTACCTGGGAAG+TGG | - | chr5.3:32629713-32629732 | None:intergenic | 50.0% |
| !! | TCTTCCTGAGAGTGCCATAG+TGG | - | chr5.3:32632297-32632316 | None:intergenic | 50.0% |
| !! | TGAGAGTGCCATAGTGGCAT+AGG | - | chr5.3:32632291-32632310 | None:intergenic | 50.0% |
| AACAGCACCATCGAGCTCTG+TGG | - | chr5.3:32632547-32632566 | None:intergenic | 55.0% | |
| CGAAAGCCGAGTCTCCAGAA+GGG | + | chr5.3:32630206-32630225 | MS.gene054701:CDS | 55.0% | |
| CTATTGGCAGGCCTACCTGA+AGG | - | chr5.3:32630711-32630730 | None:intergenic | 55.0% | |
| CTTCAGGTAGGCCTGCCAAT+AGG | + | chr5.3:32630709-32630728 | MS.gene054701:CDS | 55.0% | |
| GAACCATCATCGGAGGGAGA+TGG | - | chr5.3:32630280-32630299 | None:intergenic | 55.0% | |
| GTACCATCTCCCTCCGATGA+TGG | + | chr5.3:32630274-32630293 | MS.gene054701:CDS | 55.0% | |
| GTGGAGGATGAGACTGACGA+TGG | + | chr5.3:32630588-32630607 | MS.gene054701:CDS | 55.0% | |
| TCCTCCACAGGAAGATACGG+AGG | + | chr5.3:32633274-32633293 | MS.gene054701:CDS | 55.0% | |
| TCCTCCGTATCTTCCTGTGG+AGG | - | chr5.3:32633278-32633297 | None:intergenic | 55.0% | |
| TCGAAAGCCGAGTCTCCAGA+AGG | + | chr5.3:32630205-32630224 | MS.gene054701:CDS | 55.0% | |
| TCTGGAGACGGCATTGTTGC+AGG | + | chr5.3:32632618-32632637 | MS.gene054701:CDS | 55.0% | |
| ! | GGTGGTGGTGAAGCCGAAAT+CGG | + | chr5.3:32630534-32630553 | MS.gene054701:CDS | 55.0% |
| !! | AGCTCGATGGTGCTGTTAGC+GGG | + | chr5.3:32632550-32632569 | MS.gene054701:CDS | 55.0% |
| !! | GAGCTCGATGGTGCTGTTAG+CGG | + | chr5.3:32632549-32632568 | MS.gene054701:CDS | 55.0% |
| AGTACGCGGCTTTCCTCCAC+AGG | + | chr5.3:32633262-32633281 | MS.gene054701:CDS | 60.0% | |
| !! | CGATGGTGCTGTTAGCGGGA+TGG | + | chr5.3:32632554-32632573 | MS.gene054701:CDS | 60.0% |
| !! | TGGTGCTGTTAGCGGGATGG+AGG | + | chr5.3:32632557-32632576 | MS.gene054701:CDS | 60.0% |
| ACACTACCGGCACAACCCCC+AGG | - | chr5.3:32630804-32630823 | None:intergenic | 65.0% | |
| AGGGCTCCTGGGGGTTGTGC+CGG | + | chr5.3:32630795-32630814 | MS.gene054701:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 32629680 | 32633373 | 32629680 | ID=MS.gene054701 |
| chr5.3 | mRNA | 32629680 | 32633373 | 32629680 | ID=MS.gene054701.t1;Parent=MS.gene054701 |
| chr5.3 | exon | 32629680 | 32629720 | 32629680 | ID=MS.gene054701.t1.exon1;Parent=MS.gene054701.t1 |
| chr5.3 | CDS | 32629680 | 32629720 | 32629680 | ID=cds.MS.gene054701.t1;Parent=MS.gene054701.t1 |
| chr5.3 | exon | 32629985 | 32630331 | 32629985 | ID=MS.gene054701.t1.exon2;Parent=MS.gene054701.t1 |
| chr5.3 | CDS | 32629985 | 32630331 | 32629985 | ID=cds.MS.gene054701.t1;Parent=MS.gene054701.t1 |
| chr5.3 | exon | 32630427 | 32631079 | 32630427 | ID=MS.gene054701.t1.exon3;Parent=MS.gene054701.t1 |
| chr5.3 | CDS | 32630427 | 32631079 | 32630427 | ID=cds.MS.gene054701.t1;Parent=MS.gene054701.t1 |
| chr5.3 | exon | 32632168 | 32632639 | 32632168 | ID=MS.gene054701.t1.exon4;Parent=MS.gene054701.t1 |
| chr5.3 | CDS | 32632168 | 32632639 | 32632168 | ID=cds.MS.gene054701.t1;Parent=MS.gene054701.t1 |
| chr5.3 | exon | 32633147 | 32633373 | 32633147 | ID=MS.gene054701.t1.exon5;Parent=MS.gene054701.t1 |
| chr5.3 | CDS | 32633147 | 32633373 | 32633147 | ID=cds.MS.gene054701.t1;Parent=MS.gene054701.t1 |
| Gene Sequence |
| Protein sequence |
