Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42537.t1 | XP_003625136.1 | 98.3 | 233 | 4 | 0 | 1 | 233 | 1 | 233 | 4.10E-110 | 407.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42537.t1 | O22230 | 52.6 | 209 | 74 | 4 | 20 | 205 | 38 | 244 | 1.5e-49 | 197.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42537.t1 | G7KTH6 | 98.3 | 233 | 4 | 0 | 1 | 233 | 1 | 233 | 3.0e-110 | 407.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene42537.t1 | TF | HSF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049259 | MS.gene42537 | 0.802107 | 6.56E-49 | -1.69E-46 |
| MS.gene052053 | MS.gene42537 | 0.808498 | 3.01E-50 | -1.69E-46 |
| MS.gene052560 | MS.gene42537 | 0.839651 | 1.39E-57 | -1.69E-46 |
| MS.gene054056 | MS.gene42537 | 0.801092 | 1.06E-48 | -1.69E-46 |
| MS.gene058111 | MS.gene42537 | 0.80356 | 3.29E-49 | -1.69E-46 |
| MS.gene058628 | MS.gene42537 | 0.821407 | 4.10E-53 | -1.69E-46 |
| MS.gene058630 | MS.gene42537 | 0.800417 | 1.46E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42537.t1 | MTR_7g091370 | 98.283 | 233 | 4 | 0 | 1 | 233 | 1 | 233 | 2.52e-172 | 473 |
| MS.gene42537.t1 | MTR_5g089170 | 43.781 | 201 | 103 | 2 | 15 | 205 | 18 | 218 | 2.44e-51 | 167 |
| MS.gene42537.t1 | MTR_5g017470 | 43.850 | 187 | 81 | 1 | 16 | 178 | 3 | 189 | 3.36e-50 | 165 |
| MS.gene42537.t1 | MTR_5g010680 | 44.162 | 197 | 75 | 2 | 20 | 181 | 22 | 218 | 3.38e-50 | 167 |
| MS.gene42537.t1 | MTR_1g100777 | 38.912 | 239 | 100 | 3 | 16 | 208 | 12 | 250 | 4.44e-50 | 166 |
| MS.gene42537.t1 | MTR_3g101870 | 37.553 | 237 | 93 | 4 | 2 | 190 | 9 | 238 | 4.82e-48 | 162 |
| MS.gene42537.t1 | MTR_0020s0020 | 43.216 | 199 | 77 | 2 | 20 | 182 | 31 | 229 | 3.26e-44 | 151 |
| MS.gene42537.t1 | MTR_4g088900 | 46.154 | 169 | 83 | 4 | 20 | 181 | 31 | 198 | 2.95e-42 | 142 |
| MS.gene42537.t1 | MTR_5g029680 | 49.020 | 153 | 74 | 2 | 19 | 170 | 29 | 178 | 2.74e-41 | 147 |
| MS.gene42537.t1 | MTR_1g061170 | 46.541 | 159 | 74 | 2 | 12 | 170 | 39 | 186 | 1.02e-39 | 142 |
| MS.gene42537.t1 | MTR_7g095680 | 56.190 | 105 | 42 | 1 | 9 | 113 | 40 | 140 | 5.46e-38 | 135 |
| MS.gene42537.t1 | MTR_3g104550 | 45.062 | 162 | 76 | 3 | 9 | 170 | 37 | 185 | 5.81e-38 | 136 |
| MS.gene42537.t1 | MTR_6g043060 | 56.989 | 93 | 40 | 0 | 21 | 113 | 21 | 113 | 4.60e-37 | 132 |
| MS.gene42537.t1 | MTR_1g102860 | 52.033 | 123 | 56 | 1 | 5 | 127 | 23 | 142 | 6.18e-37 | 132 |
| MS.gene42537.t1 | MTR_1g071360 | 40.860 | 186 | 84 | 4 | 20 | 203 | 30 | 191 | 2.71e-36 | 130 |
| MS.gene42537.t1 | MTR_1g071360 | 40.323 | 186 | 85 | 3 | 20 | 203 | 27 | 188 | 4.00e-36 | 131 |
| MS.gene42537.t1 | MTR_2g100680 | 53.509 | 114 | 49 | 2 | 1 | 113 | 12 | 122 | 7.28e-36 | 132 |
| MS.gene42537.t1 | MTR_8g087540 | 43.750 | 144 | 72 | 1 | 13 | 156 | 3 | 137 | 1.44e-35 | 130 |
| MS.gene42537.t1 | MTR_8g083100 | 58.242 | 91 | 38 | 0 | 23 | 113 | 23 | 113 | 1.80e-33 | 125 |
| MS.gene42537.t1 | MTR_6g086805 | 39.394 | 165 | 75 | 2 | 21 | 172 | 10 | 162 | 1.67e-32 | 121 |
| MS.gene42537.t1 | MTR_2g100670 | 54.255 | 94 | 43 | 0 | 20 | 113 | 31 | 124 | 3.17e-32 | 119 |
| MS.gene42537.t1 | MTR_4g077970 | 43.333 | 150 | 80 | 2 | 22 | 170 | 12 | 157 | 1.36e-31 | 120 |
| MS.gene42537.t1 | MTR_2g100670 | 54.255 | 94 | 43 | 0 | 20 | 113 | 139 | 232 | 2.83e-31 | 119 |
| MS.gene42537.t1 | MTR_2g017890 | 46.667 | 105 | 56 | 0 | 22 | 126 | 15 | 119 | 3.67e-31 | 118 |
| MS.gene42537.t1 | MTR_8g105780 | 54.255 | 94 | 42 | 1 | 21 | 113 | 21 | 114 | 2.89e-30 | 115 |
| MS.gene42537.t1 | MTR_4g045757 | 50.000 | 58 | 29 | 0 | 22 | 79 | 14 | 71 | 4.18e-16 | 71.2 |
| MS.gene42537.t1 | MTR_5g047190 | 37.634 | 93 | 51 | 2 | 30 | 115 | 1 | 93 | 4.80e-15 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42537.t1 | AT2G41690 | 61.667 | 180 | 51 | 3 | 20 | 181 | 38 | 217 | 2.37e-71 | 218 |
| MS.gene42537.t1 | AT5G62020 | 40.316 | 253 | 91 | 7 | 20 | 219 | 21 | 266 | 7.10e-50 | 165 |
| MS.gene42537.t1 | AT1G46264 | 41.784 | 213 | 86 | 3 | 11 | 185 | 23 | 235 | 5.74e-49 | 164 |
| MS.gene42537.t1 | AT4G36990 | 45.641 | 195 | 88 | 3 | 12 | 188 | 4 | 198 | 2.42e-46 | 155 |
| MS.gene42537.t1 | AT4G11660 | 41.589 | 214 | 79 | 2 | 20 | 187 | 57 | 270 | 2.02e-45 | 155 |
| MS.gene42537.t1 | AT1G32330 | 48.026 | 152 | 79 | 0 | 19 | 170 | 34 | 185 | 7.20e-42 | 148 |
| MS.gene42537.t1 | AT1G32330 | 48.026 | 152 | 79 | 0 | 19 | 170 | 34 | 185 | 7.33e-42 | 148 |
| MS.gene42537.t1 | AT4G17750 | 62.105 | 95 | 36 | 0 | 20 | 114 | 50 | 144 | 2.85e-39 | 142 |
| MS.gene42537.t1 | AT5G43840 | 53.043 | 115 | 54 | 0 | 12 | 126 | 9 | 123 | 9.40e-39 | 135 |
| MS.gene42537.t1 | AT3G63350 | 57.009 | 107 | 42 | 1 | 6 | 112 | 16 | 118 | 1.31e-38 | 135 |
| MS.gene42537.t1 | AT2G26150 | 45.679 | 162 | 75 | 4 | 9 | 170 | 35 | 183 | 9.88e-38 | 135 |
| MS.gene42537.t1 | AT2G26150 | 45.679 | 162 | 75 | 4 | 9 | 170 | 35 | 183 | 9.88e-38 | 135 |
| MS.gene42537.t1 | AT3G51910 | 54.286 | 105 | 48 | 0 | 12 | 116 | 19 | 123 | 1.44e-37 | 132 |
| MS.gene42537.t1 | AT5G03720 | 43.860 | 171 | 83 | 3 | 22 | 191 | 55 | 213 | 1.89e-37 | 135 |
| MS.gene42537.t1 | AT5G03720 | 43.860 | 171 | 83 | 3 | 22 | 191 | 55 | 213 | 1.89e-37 | 135 |
| MS.gene42537.t1 | AT3G22830 | 56.604 | 106 | 46 | 0 | 12 | 117 | 51 | 156 | 6.29e-37 | 134 |
| MS.gene42537.t1 | AT3G24520 | 43.421 | 152 | 68 | 2 | 21 | 172 | 16 | 149 | 5.82e-36 | 130 |
| MS.gene42537.t1 | AT3G02990 | 46.980 | 149 | 74 | 1 | 22 | 170 | 23 | 166 | 2.58e-35 | 130 |
| MS.gene42537.t1 | AT5G16820 | 59.140 | 93 | 38 | 0 | 22 | 114 | 27 | 119 | 1.20e-33 | 126 |
| MS.gene42537.t1 | AT5G16820 | 59.140 | 93 | 38 | 0 | 22 | 114 | 27 | 119 | 1.20e-33 | 126 |
| MS.gene42537.t1 | AT4G13980 | 57.143 | 91 | 39 | 0 | 23 | 113 | 24 | 114 | 8.21e-33 | 124 |
| MS.gene42537.t1 | AT5G54070 | 52.174 | 92 | 44 | 0 | 21 | 112 | 70 | 161 | 5.08e-32 | 119 |
| MS.gene42537.t1 | AT5G45710 | 36.493 | 211 | 111 | 4 | 15 | 215 | 6 | 203 | 1.33e-29 | 113 |
| MS.gene42537.t1 | AT5G45710 | 36.493 | 211 | 111 | 4 | 15 | 215 | 6 | 203 | 1.33e-29 | 113 |
| MS.gene42537.t1 | AT1G67970 | 41.509 | 159 | 78 | 4 | 21 | 176 | 18 | 164 | 1.00e-28 | 111 |
| MS.gene42537.t1 | AT4G18880 | 49.524 | 105 | 53 | 0 | 22 | 126 | 15 | 119 | 2.41e-26 | 105 |
| MS.gene42537.t1 | AT4G18870 | 39.773 | 88 | 53 | 0 | 22 | 109 | 146 | 233 | 4.22e-20 | 87.0 |
| MS.gene42537.t1 | AT4G18870 | 36.842 | 95 | 59 | 1 | 15 | 109 | 6 | 99 | 1.19e-16 | 77.4 |
| MS.gene42537.t1 | AT1G77570 | 34.444 | 90 | 56 | 2 | 23 | 109 | 27 | 116 | 2.78e-11 | 60.1 |
Find 46 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGAGAAAGAAGGATTAAA+AGG | 0.312750 | 7.1:-16183300 | MS.gene42537:CDS |
| ATAAAAGGCCAATGCTGTTT+GGG | 0.344706 | 7.1:-16183342 | MS.gene42537:CDS |
| AAGCTAAAGATGATGATAAA+AGG | 0.345414 | 7.1:-16183357 | MS.gene42537:CDS |
| GTAAAGTTGCAACAAGTAGA+TGG | 0.356542 | 7.1:-16183672 | MS.gene42537:CDS |
| GTGTAAAGAACTACTTGATT+TGG | 0.382134 | 7.1:-16183413 | MS.gene42537:CDS |
| AATGCTGTTTGGGGTGAGAT+TGG | 0.405597 | 7.1:-16183332 | MS.gene42537:CDS |
| GGAGTAGTTATTAGTGAGAA+GGG | 0.409709 | 7.1:-16184951 | MS.gene42537:CDS |
| GATAAAAGGCCAATGCTGTT+TGG | 0.412696 | 7.1:-16183343 | MS.gene42537:CDS |
| TATTAGTGAGAAGGGATTGT+TGG | 0.414198 | 7.1:-16184943 | MS.gene42537:CDS |
| CGATGAAGGAACGGCGTTTG+TGG | 0.421292 | 7.1:-16184829 | MS.gene42537:CDS |
| TCATCAACCTCATCAACTTC+GGG | 0.428531 | 7.1:-16183520 | MS.gene42537:CDS |
| GATATCACACCATCGGTTAT+CGG | 0.429226 | 7.1:+16184858 | None:intergenic |
| GGCGTTTGTGGTGTGGCAGC+CGG | 0.436959 | 7.1:-16184817 | MS.gene42537:CDS |
| AGGAGTAGTTATTAGTGAGA+AGG | 0.465195 | 7.1:-16184952 | MS.gene42537:CDS |
| TGCAATGAAAGATTCAAGAA+AGG | 0.469330 | 7.1:-16183643 | MS.gene42537:CDS |
| GAGAGTTACTATCCGAGATT+CGG | 0.475046 | 7.1:-16183615 | MS.gene42537:CDS |
| TTGCTATGCTTGAAGAGTGT+TGG | 0.486048 | 7.1:+16184771 | None:intergenic |
| ATCATCAACCTCATCAACTT+CGG | 0.493338 | 7.1:-16183521 | MS.gene42537:CDS |
| CTGAGCTAACAAGCATGAAA+AGG | 0.494508 | 7.1:-16183438 | MS.gene42537:CDS |
| CATGTATGTCTTCAACAAGA+AGG | 0.524524 | 7.1:+16184893 | None:intergenic |
| GAGCAACAAGCAACAACAAA+CGG | 0.533270 | 7.1:-16183578 | MS.gene42537:CDS |
| ATGTTCAACAAGGAGAAAGA+AGG | 0.541421 | 7.1:-16183309 | MS.gene42537:CDS |
| GTCTTCAACAAGAAGGGTGA+TGG | 0.545694 | 7.1:+16184900 | None:intergenic |
| GAGAAGGGATTGTTGGAATG+TGG | 0.547926 | 7.1:-16184936 | MS.gene42537:CDS |
| AATCTCACCCCAAACAGCAT+TGG | 0.559832 | 7.1:+16183334 | None:intergenic |
| CTTGTTGAAGACATACATGT+TGG | 0.560125 | 7.1:-16184889 | MS.gene42537:CDS |
| AGATTCGGAGAAGAAAAGCT+TGG | 0.562625 | 7.1:-16183600 | MS.gene42537:CDS |
| TAACCGATGGTGTGATATCG+TGG | 0.574458 | 7.1:-16184854 | MS.gene42537:CDS |
| TAAAGTTGCAACAAGTAGAT+GGG | 0.577262 | 7.1:-16183671 | MS.gene42537:CDS |
| ATGTATGTCTTCAACAAGAA+GGG | 0.585625 | 7.1:+16184894 | None:intergenic |
| GTTTGTGGTGTGGCAGCCGG+CGG | 0.593281 | 7.1:-16184814 | MS.gene42537:CDS |
| TTCGGGTTACACTAATCTAG+TGG | 0.594205 | 7.1:-16183503 | MS.gene42537:CDS |
| TGAAAACAAGCGACTCAAAG+AGG | 0.607328 | 7.1:-16183479 | MS.gene42537:CDS |
| GTCGAGGATCCGATAACCGA+TGG | 0.607491 | 7.1:-16184867 | MS.gene42537:CDS |
| AAAGAAATAGAAATAATGGA+AGG | 0.609607 | 7.1:-16184972 | None:intergenic |
| AGTGTAACCCGAAGTTGATG+AGG | 0.609806 | 7.1:+16183513 | None:intergenic |
| GTGATATCGTGGAACGATGA+AGG | 0.614245 | 7.1:-16184843 | MS.gene42537:CDS |
| ATCGTGGAACGATGAAGGAA+CGG | 0.618716 | 7.1:-16184838 | MS.gene42537:CDS |
| GAAGACATACATGTTGGTCG+AGG | 0.623457 | 7.1:-16184883 | MS.gene42537:CDS |
| AAGGAACGGCGTTTGTGGTG+TGG | 0.626326 | 7.1:-16184824 | MS.gene42537:CDS |
| ATATCACGAGCAAACTCCGC+CGG | 0.632816 | 7.1:+16184798 | None:intergenic |
| GCGACTCAAAGAGGAAAATG+TGG | 0.640956 | 7.1:-16183470 | MS.gene42537:CDS |
| TATGCTTGAAGAGTGTTGGA+AGG | 0.652326 | 7.1:+16184775 | None:intergenic |
| GTGAGATTGGATGTTCAACA+AGG | 0.660188 | 7.1:-16183319 | MS.gene42537:CDS |
| GTTCCACGATATCACACCAT+CGG | 0.688849 | 7.1:+16184851 | None:intergenic |
| TAAAAGGCCAATGCTGTTTG+GGG | 0.694963 | 7.1:-16183341 | MS.gene42537:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTATTATTTCAAATTTT+GGG | + | chr7.1:16183761-16183780 | None:intergenic | 10.0% |
| !!! | TTTTTATTTTGTAAAGTATT+AGG | - | chr7.1:16183638-16183657 | MS.gene42537:CDS | 10.0% |
| !! | AAAATTAAATACCTATTTGT+GGG | - | chr7.1:16184490-16184509 | MS.gene42537:intron | 15.0% |
| !! | AATAATAAACAGAGAAAAAA+TGG | - | chr7.1:16183770-16183789 | MS.gene42537:intron | 15.0% |
| !! | TAAAATTAAATACCTATTTG+TGG | - | chr7.1:16184489-16184508 | MS.gene42537:intron | 15.0% |
| !! | TTCAATTTATACCAAAAAAA+TGG | - | chr7.1:16184811-16184830 | MS.gene42537:CDS | 15.0% |
| !!! | AATTCATTGTTTATTTTTGA+AGG | - | chr7.1:16184135-16184154 | MS.gene42537:intron | 15.0% |
| !!! | AGTATTTTCAATTAAGATAT+AGG | - | chr7.1:16183968-16183987 | MS.gene42537:intron | 15.0% |
| !!! | CTGTTTATTATTTCAAATTT+TGG | + | chr7.1:16183762-16183781 | None:intergenic | 15.0% |
| !!! | GTATTTTCAATTAAGATATA+GGG | - | chr7.1:16183969-16183988 | MS.gene42537:intron | 15.0% |
| !!! | GTTTATTATTTCAAATTTTG+GGG | + | chr7.1:16183760-16183779 | None:intergenic | 15.0% |
| !! | AAAAAGGATAGGAAAAAAAA+AGG | - | chr7.1:16183823-16183842 | MS.gene42537:intron | 20.0% |
| !! | ATATTTGTTTAACCTAGTTT+AGG | - | chr7.1:16183884-16183903 | MS.gene42537:intron | 20.0% |
| !! | ATCTAAATATACGATCAATT+TGG | + | chr7.1:16183693-16183712 | None:intergenic | 20.0% |
| !! | TTCAAGAAAGAATTCATATT+TGG | + | chr7.1:16184398-16184417 | None:intergenic | 20.0% |
| !!! | AAAAAAAAACTAGTTTAGCT+AGG | - | chr7.1:16183920-16183939 | MS.gene42537:intron | 20.0% |
| !!! | AGAGAATATTTTATATCTTC+TGG | + | chr7.1:16184000-16184019 | None:intergenic | 20.0% |
| !!! | GTAAAGTTTTGTTAAGAAAA+AGG | - | chr7.1:16183807-16183826 | MS.gene42537:intron | 20.0% |
| !!! | TGTATTAAAAGCATGTTTTA+TGG | + | chr7.1:16184375-16184394 | None:intergenic | 20.0% |
| ! | AAGCTAAAGATGATGATAAA+AGG | - | chr7.1:16184843-16184862 | MS.gene42537:CDS | 25.0% |
| ! | AATATACGATCAATTTGGAA+TGG | + | chr7.1:16183688-16183707 | None:intergenic | 25.0% |
| ! | AATATAGTTAACCTGTTTCA+TGG | + | chr7.1:16183869-16183888 | None:intergenic | 25.0% |
| ! | ATAAACAGAGAAAAAATGGA+TGG | - | chr7.1:16183774-16183793 | MS.gene42537:intron | 25.0% |
| ! | ATAGAAAATTCAATGTTGGT+GGG | - | chr7.1:16184161-16184180 | MS.gene42537:intron | 25.0% |
| ! | CTCATGTTAATTGACATTAT+GGG | - | chr7.1:16184051-16184070 | MS.gene42537:intron | 25.0% |
| ! | TCATGTTAATTGACATTATG+GGG | - | chr7.1:16184052-16184071 | MS.gene42537:intron | 25.0% |
| ! | TCTCATGTTAATTGACATTA+TGG | - | chr7.1:16184050-16184069 | MS.gene42537:intron | 25.0% |
| ! | TTTGTTAAATGTGAAGGAAT+TGG | - | chr7.1:16183944-16183963 | MS.gene42537:intron | 25.0% |
| !! | TTTTCAATTAAGATATAGGG+TGG | - | chr7.1:16183972-16183991 | MS.gene42537:intron | 25.0% |
| !!! | GTTTTGTTAAGAAAAAGGAT+AGG | - | chr7.1:16183812-16183831 | MS.gene42537:intron | 25.0% |
| !!! | TCATTGTTTATTTTTGAAGG+AGG | - | chr7.1:16184138-16184157 | MS.gene42537:intron | 25.0% |
| AAGGAGAAAGAAGGATTAAA+AGG | - | chr7.1:16184900-16184919 | MS.gene42537:CDS | 30.0% | |
| ACAACACTTAATAAGCAACA+TGG | - | chr7.1:16184318-16184337 | MS.gene42537:intron | 30.0% | |
| ATGTATGTCTTCAACAAGAA+GGG | + | chr7.1:16183309-16183328 | None:intergenic | 30.0% | |
| CATGTTAATTGACATTATGG+GGG | - | chr7.1:16184053-16184072 | MS.gene42537:intron | 30.0% | |
| GACTTGTGAGTTTGAATTTA+AGG | + | chr7.1:16184103-16184122 | None:intergenic | 30.0% | |
| GAGGATAGAAAATTCAATGT+TGG | - | chr7.1:16184157-16184176 | MS.gene42537:intron | 30.0% | |
| GATAGAAAATTCAATGTTGG+TGG | - | chr7.1:16184160-16184179 | MS.gene42537:intron | 30.0% | |
| GTGTAAAGAACTACTTGATT+TGG | - | chr7.1:16184787-16184806 | MS.gene42537:CDS | 30.0% | |
| TAAAGTTGCAACAAGTAGAT+GGG | - | chr7.1:16184529-16184548 | MS.gene42537:intron | 30.0% | |
| TACCAAAAAAATGGAAGAAG+AGG | - | chr7.1:16184820-16184839 | MS.gene42537:CDS | 30.0% | |
| TCAACACAAAAACCTAAACT+AGG | + | chr7.1:16183899-16183918 | None:intergenic | 30.0% | |
| TCTTTCATGATGAACTTAAG+TGG | - | chr7.1:16184437-16184456 | MS.gene42537:intron | 30.0% | |
| TGCAATGAAAGATTCAAGAA+AGG | - | chr7.1:16184557-16184576 | MS.gene42537:intron | 30.0% | |
| TTAGATGTATGTACGTACAT+AGG | + | chr7.1:16183484-16183503 | None:intergenic | 30.0% | |
| !!! | CTAGGTTTTGTTAAATGTGA+AGG | - | chr7.1:16183938-16183957 | MS.gene42537:intron | 30.0% |
| !!! | TTCCTCTTCTTCCATTTTTT+TGG | + | chr7.1:16184825-16184844 | None:intergenic | 30.0% |
| ACCTATTTGTGGGATGTATA+GGG | - | chr7.1:16184500-16184519 | MS.gene42537:intron | 35.0% | |
| AGGAGTAGTTATTAGTGAGA+AGG | - | chr7.1:16183248-16183267 | MS.gene42537:CDS | 35.0% | |
| ATCATCAACCTCATCAACTT+CGG | - | chr7.1:16184679-16184698 | MS.gene42537:intron | 35.0% | |
| ATGTTCAACAAGGAGAAAGA+AGG | - | chr7.1:16184891-16184910 | MS.gene42537:CDS | 35.0% | |
| ATTAACATGAGAAACGAGGA+TGG | + | chr7.1:16184042-16184061 | None:intergenic | 35.0% | |
| CATGTATGTCTTCAACAAGA+AGG | + | chr7.1:16183310-16183329 | None:intergenic | 35.0% | |
| CTTGTTGAAGACATACATGT+TGG | - | chr7.1:16183311-16183330 | MS.gene42537:CDS | 35.0% | |
| GGAGTAGTTATTAGTGAGAA+GGG | - | chr7.1:16183249-16183268 | MS.gene42537:CDS | 35.0% | |
| GTAAAGTTGCAACAAGTAGA+TGG | - | chr7.1:16184528-16184547 | MS.gene42537:intron | 35.0% | |
| GTCAATTAACATGAGAAACG+AGG | + | chr7.1:16184046-16184065 | None:intergenic | 35.0% | |
| TAATTGACATTATGGGGGTT+TGG | - | chr7.1:16184058-16184077 | MS.gene42537:intron | 35.0% | |
| TACCTATTTGTGGGATGTAT+AGG | - | chr7.1:16184499-16184518 | MS.gene42537:intron | 35.0% | |
| TATTAGTGAGAAGGGATTGT+TGG | - | chr7.1:16183257-16183276 | MS.gene42537:CDS | 35.0% | |
| ! | ATAAAAGGCCAATGCTGTTT+GGG | - | chr7.1:16184858-16184877 | MS.gene42537:CDS | 35.0% |
| ! | GTTTTATGGTGCCTTACTAA+TGG | + | chr7.1:16184361-16184380 | None:intergenic | 35.0% |
| ! | TGAGTAAAGCACCATTAGTA+AGG | - | chr7.1:16184347-16184366 | MS.gene42537:intron | 35.0% |
| !!! | GCAACTTCTCTAGTTTTGTA+CGG | - | chr7.1:16183448-16183467 | MS.gene42537:CDS | 35.0% |
| AGATTCGGAGAAGAAAAGCT+TGG | - | chr7.1:16184600-16184619 | MS.gene42537:intron | 40.0% | |
| CTGAGCTAACAAGCATGAAA+AGG | - | chr7.1:16184762-16184781 | MS.gene42537:CDS | 40.0% | |
| GAGAGTTACTATCCGAGATT+CGG | - | chr7.1:16184585-16184604 | MS.gene42537:intron | 40.0% | |
| GAGCAACAAGCAACAACAAA+CGG | - | chr7.1:16184622-16184641 | MS.gene42537:intron | 40.0% | |
| GATAAAAGGCCAATGCTGTT+TGG | - | chr7.1:16184857-16184876 | MS.gene42537:CDS | 40.0% | |
| GTGAGATTGGATGTTCAACA+AGG | - | chr7.1:16184881-16184900 | MS.gene42537:CDS | 40.0% | |
| TCATCAACCTCATCAACTTC+GGG | - | chr7.1:16184680-16184699 | MS.gene42537:intron | 40.0% | |
| TCATGAGTACTCCATGAAAC+AGG | - | chr7.1:16183855-16183874 | MS.gene42537:intron | 40.0% | |
| TCCCTATACATCCCACAAAT+AGG | + | chr7.1:16184504-16184523 | None:intergenic | 40.0% | |
| TGAAAACAAGCGACTCAAAG+AGG | - | chr7.1:16184721-16184740 | MS.gene42537:intron | 40.0% | |
| ! | AGCTTTTCTTCTCCGAATCT+CGG | + | chr7.1:16184600-16184619 | None:intergenic | 40.0% |
| ! | GATATCACACCATCGGTTAT+CGG | + | chr7.1:16183345-16183364 | None:intergenic | 40.0% |
| ! | TAAAAGGCCAATGCTGTTTG+GGG | - | chr7.1:16184859-16184878 | MS.gene42537:CDS | 40.0% |
| ! | TTCGGGTTACACTAATCTAG+TGG | - | chr7.1:16184697-16184716 | MS.gene42537:intron | 40.0% |
| ! | TTGCTATGCTTGAAGAGTGT+TGG | + | chr7.1:16183432-16183451 | None:intergenic | 40.0% |
| !! | ATTATGGGGGTTTGGTAATG+AGG | - | chr7.1:16184066-16184085 | MS.gene42537:intron | 40.0% |
| !! | TATGCTTGAAGAGTGTTGGA+AGG | + | chr7.1:16183428-16183447 | None:intergenic | 40.0% |
| AATCTCACCCCAAACAGCAT+TGG | + | chr7.1:16184869-16184888 | None:intergenic | 45.0% | |
| ATCGTGGAACGATGAAGGAA+CGG | - | chr7.1:16183362-16183381 | MS.gene42537:CDS | 45.0% | |
| GAAGACATACATGTTGGTCG+AGG | - | chr7.1:16183317-16183336 | MS.gene42537:CDS | 45.0% | |
| GAGAAGGGATTGTTGGAATG+TGG | - | chr7.1:16183264-16183283 | MS.gene42537:CDS | 45.0% | |
| GCGACTCAAAGAGGAAAATG+TGG | - | chr7.1:16184730-16184749 | MS.gene42537:intron | 45.0% | |
| GTCTTCAACAAGAAGGGTGA+TGG | + | chr7.1:16183303-16183322 | None:intergenic | 45.0% | |
| GTGATATCGTGGAACGATGA+AGG | - | chr7.1:16183357-16183376 | MS.gene42537:CDS | 45.0% | |
| GTTCCACGATATCACACCAT+CGG | + | chr7.1:16183352-16183371 | None:intergenic | 45.0% | |
| TAACCGATGGTGTGATATCG+TGG | - | chr7.1:16183346-16183365 | MS.gene42537:CDS | 45.0% | |
| TCTCTCCCTATTCAATACCC+CGG | - | chr7.1:16184015-16184034 | MS.gene42537:intron | 45.0% | |
| ! | AATGCTGTTTGGGGTGAGAT+TGG | - | chr7.1:16184868-16184887 | MS.gene42537:CDS | 45.0% |
| !! | AGTGTAACCCGAAGTTGATG+AGG | + | chr7.1:16184690-16184709 | None:intergenic | 45.0% |
| !! | ATGGTCCGGGGTATTGAATA+GGG | + | chr7.1:16184023-16184042 | None:intergenic | 45.0% |
| ATATCACGAGCAAACTCCGC+CGG | + | chr7.1:16183405-16183424 | None:intergenic | 50.0% | |
| ATGAGAAACGAGGATGGTCC+GGG | + | chr7.1:16184036-16184055 | None:intergenic | 50.0% | |
| CATGAGAAACGAGGATGGTC+CGG | + | chr7.1:16184037-16184056 | None:intergenic | 50.0% | |
| !! | GATGGTCCGGGGTATTGAAT+AGG | + | chr7.1:16184024-16184043 | None:intergenic | 50.0% |
| AAGGAACGGCGTTTGTGGTG+TGG | - | chr7.1:16183376-16183395 | MS.gene42537:CDS | 55.0% | |
| CGATGAAGGAACGGCGTTTG+TGG | - | chr7.1:16183371-16183390 | MS.gene42537:CDS | 55.0% | |
| GTCGAGGATCCGATAACCGA+TGG | - | chr7.1:16183333-16183352 | MS.gene42537:CDS | 55.0% | |
| TGAGAAACGAGGATGGTCCG+GGG | + | chr7.1:16184035-16184054 | None:intergenic | 55.0% | |
| GGCGTTTGTGGTGTGGCAGC+CGG | - | chr7.1:16183383-16183402 | MS.gene42537:CDS | 65.0% | |
| GTTTGTGGTGTGGCAGCCGG+CGG | - | chr7.1:16183386-16183405 | MS.gene42537:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 16183243 | 16184979 | 16183243 | ID=MS.gene42537 |
| chr7.1 | mRNA | 16183243 | 16184979 | 16183243 | ID=MS.gene42537.t1;Parent=MS.gene42537 |
| chr7.1 | exon | 16184737 | 16184979 | 16184737 | ID=MS.gene42537.t1.exon1;Parent=MS.gene42537.t1 |
| chr7.1 | CDS | 16184737 | 16184979 | 16184737 | ID=cds.MS.gene42537.t1;Parent=MS.gene42537.t1 |
| chr7.1 | exon | 16183243 | 16183701 | 16183243 | ID=MS.gene42537.t1.exon2;Parent=MS.gene42537.t1 |
| chr7.1 | CDS | 16183243 | 16183701 | 16183243 | ID=cds.MS.gene42537.t1;Parent=MS.gene42537.t1 |
| Gene Sequence |
| Protein sequence |
