AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene42604

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42604.t1 MTR_4g063800 98.777 654 8 0 1 654 1 654 0.0 1321
MS.gene42604.t1 MTR_1g094215 54.968 624 267 3 6 629 12 621 0.0 627
MS.gene42604.t1 MTR_7g059405 51.587 630 282 6 9 626 14 632 0.0 608
MS.gene42604.t1 MTR_1g094215 60.754 451 166 2 183 633 3 442 3.63e-175 506
MS.gene42604.t1 MTR_7g078330 42.742 620 337 4 12 628 38 642 6.47e-164 484
MS.gene42604.t1 MTR_4g485520 57.784 379 158 1 255 631 105 483 1.58e-149 442
MS.gene42604.t1 MTR_4g485520 57.784 379 158 1 255 631 273 651 9.57e-148 443
MS.gene42604.t1 MTR_4g485520 40.152 132 52 5 25 137 39 162 8.17e-12 68.9
MS.gene42604.t1 MTR_5g083030 36.189 677 378 16 9 637 24 694 1.30e-117 367
MS.gene42604.t1 MTR_2g018010 37.519 661 371 17 6 635 33 682 1.18e-107 342
MS.gene42604.t1 MTR_7g116600 40.941 425 227 12 213 628 43 452 1.48e-85 276
MS.gene42604.t1 MTR_3g078160 30.078 645 404 16 18 632 35 662 2.57e-80 268
MS.gene42604.t1 MTR_3g078160 30.078 645 404 16 18 632 35 662 3.23e-80 268
MS.gene42604.t1 MTR_7g053260 37.897 409 228 10 231 629 60 452 3.70e-80 261
MS.gene42604.t1 MTR_3g466220 54.643 280 126 1 351 630 530 808 2.35e-79 269
MS.gene42604.t1 MTR_3g466220 28.525 305 191 8 26 328 6 285 5.12e-27 117
MS.gene42604.t1 MTR_3g466220 54.448 281 127 1 351 631 551 830 2.40e-79 269
MS.gene42604.t1 MTR_3g466220 28.525 305 191 8 26 328 27 306 5.72e-27 117
MS.gene42604.t1 MTR_7g097020 48.399 281 144 1 351 631 480 759 2.38e-72 249
MS.gene42604.t1 MTR_7g097020 25.228 329 182 7 23 330 31 316 2.62e-23 105
MS.gene42604.t1 MTR_1g069845 46.263 281 150 1 351 631 321 600 5.57e-69 236
MS.gene42604.t1 MTR_1g069845 37.838 148 77 2 177 322 57 191 2.61e-23 105
MS.gene42604.t1 MTR_1g069845 46.263 281 150 1 351 631 438 717 2.82e-68 237
MS.gene42604.t1 MTR_1g069845 27.469 324 199 8 9 322 11 308 1.28e-23 106
MS.gene42604.t1 MTR_1g069845 46.263 281 150 1 351 631 442 721 2.86e-68 237
MS.gene42604.t1 MTR_1g069845 27.469 324 199 8 9 322 15 312 1.38e-23 106
MS.gene42604.t1 MTR_1g018180 42.453 318 176 2 321 631 27 344 1.06e-67 225
MS.gene42604.t1 MTR_4g107010 37.371 388 231 6 256 631 281 668 2.16e-66 232
MS.gene42604.t1 MTR_3g078160 30.957 533 326 13 7 514 24 539 2.39e-66 228
MS.gene42604.t1 MTR_2g026130 47.925 265 138 0 368 632 190 454 1.69e-64 220
MS.gene42604.t1 MTR_1g079450 36.145 415 241 9 229 634 45 444 9.70e-63 215
MS.gene42604.t1 MTR_3g103050 43.262 282 156 1 353 630 51 332 1.08e-61 209
MS.gene42604.t1 MTR_5g034440 29.709 653 415 17 9 632 33 670 3.93e-60 214
MS.gene42604.t1 MTR_4g028960 29.675 647 412 17 9 628 35 665 1.89e-59 212
MS.gene42604.t1 MTR_1g093965 37.457 291 89 4 268 558 1 198 2.49e-50 174
MS.gene42604.t1 MTR_3g085610 25.362 690 410 17 60 653 53 733 1.08e-49 185
MS.gene42604.t1 MTR_1g093995 37.113 291 90 4 268 558 1 198 2.03e-49 171
MS.gene42604.t1 MTR_4g091880 32.817 387 222 11 252 624 2 364 1.90e-46 169
MS.gene42604.t1 MTR_8g080280 26.042 672 389 18 60 633 54 715 8.07e-45 171
MS.gene42604.t1 MTR_4g091880 31.579 380 208 11 252 624 2 336 3.67e-43 159
MS.gene42604.t1 MTR_2g011140 31.649 376 227 11 259 623 19 375 1.14e-42 158
MS.gene42604.t1 MTR_3g078340 35.842 279 168 4 354 626 212 485 8.16e-39 150
MS.gene42604.t1 MTR_4g085720 32.134 389 237 12 255 628 14 390 2.47e-36 141
MS.gene42604.t1 MTR_7g106340 28.641 412 250 12 249 628 2 401 1.53e-33 133
MS.gene42604.t1 MTR_3g065080 25.355 422 268 13 242 634 23 426 1.37e-32 131
MS.gene42604.t1 MTR_5g077510 27.681 401 246 15 255 627 35 419 6.91e-31 126
MS.gene42604.t1 MTR_6g008170 31.746 252 167 3 375 623 260 509 2.46e-30 126
MS.gene42604.t1 MTR_5g015210 27.322 366 244 7 255 613 67 417 1.40e-29 122
MS.gene42604.t1 MTR_2g087350 32.198 323 189 10 255 559 6 316 8.70e-28 116
MS.gene42604.t1 MTR_6g071340 27.338 417 241 17 255 630 5 400 9.22e-28 116
MS.gene42604.t1 MTR_8g092870 27.342 395 253 12 255 624 10 395 1.23e-27 116
MS.gene42604.t1 MTR_5g048050 26.859 417 243 17 255 630 25 420 4.49e-27 115
MS.gene42604.t1 MTR_1g056840 28.247 308 171 8 259 525 11 309 6.35e-27 114
MS.gene42604.t1 MTR_3g095730 28.894 398 241 14 255 624 13 396 1.34e-26 113
MS.gene42604.t1 MTR_3g106140 31.834 289 177 8 351 624 108 391 1.43e-26 114
MS.gene42604.t1 MTR_1g014420 32.624 282 169 9 368 634 144 419 1.80e-26 114
MS.gene42604.t1 MTR_1g056880 25.481 416 255 12 259 628 11 417 3.27e-26 112
MS.gene42604.t1 MTR_8g077205 23.370 629 385 20 33 612 31 611 4.34e-26 114
MS.gene42604.t1 MTR_5g069340 33.574 277 179 4 353 624 34 310 1.50e-25 108
MS.gene42604.t1 MTR_5g069340 28.522 291 155 5 311 550 31 319 1.08e-14 76.3
MS.gene42604.t1 MTR_2g007630 34.510 255 109 8 268 520 1 199 4.84e-25 105
MS.gene42604.t1 MTR_1g056870 25.359 418 253 13 259 628 11 417 1.90e-24 107
MS.gene42604.t1 MTR_8g077205 24.742 388 237 12 241 612 151 499 3.91e-24 107
MS.gene42604.t1 MTR_1g017770 25.260 384 263 8 255 627 45 415 1.68e-23 104
MS.gene42604.t1 MTR_5g020570 48.235 85 42 1 246 330 266 348 6.92e-21 97.8
MS.gene42604.t1 MTR_5g020570 48.235 85 42 1 246 330 281 363 8.12e-21 97.8
MS.gene42604.t1 MTR_8g027140 23.826 596 397 17 27 607 37 590 1.46e-20 97.1
MS.gene42604.t1 MTR_3g067685 33.700 273 174 5 357 624 45 315 1.54e-20 94.7
MS.gene42604.t1 MTR_1g094025 45.217 115 40 1 429 543 188 279 3.56e-20 92.0
MS.gene42604.t1 MTR_8g039560 30.303 297 187 9 348 626 3 297 9.62e-20 91.7
MS.gene42604.t1 MTR_3g115670 26.862 376 231 11 254 591 29 398 1.10e-19 94.4
MS.gene42604.t1 MTR_5g079550 27.083 288 169 4 339 624 46 294 1.14e-19 91.7
MS.gene42604.t1 MTR_3g096370 49.398 83 41 1 255 336 10 92 1.73e-19 91.7
MS.gene42604.t1 MTR_1g056910 25.369 406 239 13 255 624 6 383 1.94e-19 91.7
MS.gene42604.t1 MTR_7g117890 22.621 557 373 12 1 544 10 521 4.52e-19 92.4
MS.gene42604.t1 MTR_1g094205 51.250 80 39 0 327 406 25 104 5.20e-18 80.1
MS.gene42604.t1 MTR_1g090320 38.356 146 79 7 256 399 514 650 1.38e-17 87.8
MS.gene42604.t1 MTR_1g090320 38.356 146 79 7 256 399 516 652 1.41e-17 87.8
MS.gene42604.t1 MTR_4g051515 27.469 324 191 13 255 550 6 313 4.01e-17 84.7
MS.gene42604.t1 MTR_8g103227 35.878 131 77 4 221 349 363 488 7.60e-15 79.0
MS.gene42604.t1 MTR_1g076400 28.065 367 223 13 254 588 261 618 1.58e-14 77.8
MS.gene42604.t1 MTR_5g032010 47.761 67 35 0 255 321 732 798 2.52e-14 77.0
MS.gene42604.t1 MTR_2g096850 48.529 68 35 0 254 321 739 806 1.15e-13 75.1
MS.gene42604.t1 MTR_2g096850 48.529 68 35 0 254 321 588 655 1.22e-13 74.7
MS.gene42604.t1 MTR_7g094910 28.829 222 154 3 353 571 185 405 6.08e-13 72.4
MS.gene42604.t1 MTR_7g094910 28.829 222 154 3 353 571 185 405 8.50e-13 72.0
MS.gene42604.t1 MTR_7g094900 28.829 222 154 3 353 571 204 424 9.06e-13 72.0
MS.gene42604.t1 MTR_7g005940 39.437 71 42 1 252 321 592 662 2.45e-12 70.9
MS.gene42604.t1 MTR_7g005940 39.437 71 42 1 252 321 592 662 2.61e-12 70.9
MS.gene42604.t1 MTR_7g007780 31.169 154 103 1 382 532 588 741 4.36e-12 70.1
MS.gene42604.t1 MTR_1g104870 30.769 195 131 4 353 544 198 391 4.42e-12 69.7
MS.gene42604.t1 MTR_1g100820 48.485 66 34 0 256 321 649 714 4.59e-12 69.7
MS.gene42604.t1 MTR_1g100820 48.485 66 34 0 256 321 647 712 4.63e-12 69.7
MS.gene42604.t1 MTR_3g110138 34.667 150 94 3 490 636 152 300 4.86e-12 67.8
MS.gene42604.t1 MTR_5g005940 29.381 194 135 2 353 544 195 388 7.81e-12 68.9
MS.gene42604.t1 MTR_5g005940 29.381 194 135 2 353 544 195 388 8.96e-12 68.6
MS.gene42604.t1 MTR_7g077780 37.000 100 58 3 226 325 802 896 1.33e-11 68.6
MS.gene42604.t1 MTR_5g032010 27.632 152 85 4 170 321 436 562 7.45e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42604.t1 AT3G46510 68.092 655 202 3 1 652 1 651 0.0 884
MS.gene42604.t1 AT2G28830 65.832 559 177 9 86 635 17 570 0.0 698
MS.gene42604.t1 AT3G54850 53.376 622 275 4 4 624 11 618 0.0 617
MS.gene42604.t1 AT1G23030 44.252 635 303 9 9 628 11 609 6.66e-155 460
MS.gene42604.t1 AT5G42340 41.413 623 345 4 6 628 54 656 3.78e-153 457
MS.gene42604.t1 AT1G71020 44.700 651 288 14 9 628 11 620 1.17e-152 455
MS.gene42604.t1 AT1G71020 54.412 408 172 5 228 628 72 472 5.07e-137 410
MS.gene42604.t1 AT1G29340 36.254 582 335 14 72 628 117 687 9.36e-89 292
MS.gene42604.t1 AT3G07360 38.701 385 217 8 256 628 75 452 2.25e-82 268
MS.gene42604.t1 AT2G23140 49.518 311 146 3 331 634 325 631 2.35e-81 270
MS.gene42604.t1 AT2G23140 51.685 89 37 1 255 343 41 123 6.01e-24 107
MS.gene42604.t1 AT2G23140 49.518 311 146 3 331 634 325 631 2.35e-81 270
MS.gene42604.t1 AT2G23140 51.685 89 37 1 255 343 41 123 6.01e-24 107
MS.gene42604.t1 AT2G23140 49.518 311 146 3 331 634 517 823 1.03e-80 273
MS.gene42604.t1 AT2G23140 51.685 89 37 1 255 343 233 315 6.29e-24 107
MS.gene42604.t1 AT2G23140 49.518 311 146 3 331 634 514 820 1.18e-80 272
MS.gene42604.t1 AT2G23140 51.685 89 37 1 255 343 230 312 7.08e-24 107
MS.gene42604.t1 AT2G23140 49.518 311 146 3 331 634 514 820 1.18e-80 272
MS.gene42604.t1 AT2G23140 51.685 89 37 1 255 343 230 312 7.08e-24 107
MS.gene42604.t1 AT5G67340 46.865 303 155 3 333 634 407 704 3.91e-72 247
MS.gene42604.t1 AT5G67340 32.249 369 221 10 255 607 240 595 6.70e-39 153
MS.gene42604.t1 AT5G67340 46.865 303 155 3 333 634 407 704 3.91e-72 247
MS.gene42604.t1 AT5G67340 32.249 369 221 10 255 607 240 595 6.70e-39 153
MS.gene42604.t1 AT5G01830 29.580 666 384 18 14 642 42 659 7.91e-71 243
MS.gene42604.t1 AT3G01400 45.520 279 151 1 353 630 64 342 7.47e-65 218
MS.gene42604.t1 AT3G54790 47.653 277 143 2 356 631 441 716 2.44e-63 223
MS.gene42604.t1 AT3G54790 32.804 189 100 4 145 327 107 274 2.89e-21 99.0
MS.gene42604.t1 AT3G54790 34.270 178 113 4 349 524 517 692 6.54e-13 72.4
MS.gene42604.t1 AT3G54790 47.653 277 143 2 356 631 477 752 5.00e-63 223
MS.gene42604.t1 AT3G54790 32.804 189 100 4 145 327 143 310 3.57e-21 99.0
MS.gene42604.t1 AT3G54790 34.270 178 113 4 349 524 553 728 5.72e-13 72.8
MS.gene42604.t1 AT3G54790 47.653 277 143 2 356 631 477 752 5.00e-63 223
MS.gene42604.t1 AT3G54790 32.804 189 100 4 145 327 143 310 3.57e-21 99.0
MS.gene42604.t1 AT3G54790 34.270 178 113 4 349 524 553 728 5.72e-13 72.8
MS.gene42604.t1 AT5G58680 44.286 280 154 2 353 630 62 341 5.43e-62 210
MS.gene42604.t1 AT1G60190 29.147 621 407 17 35 633 60 669 3.10e-61 217
MS.gene42604.t1 AT1G24330 28.103 701 390 21 30 634 30 712 2.54e-58 210
MS.gene42604.t1 AT1G24330 28.103 701 390 21 30 634 30 712 2.54e-58 210
MS.gene42604.t1 AT4G16490 44.964 278 151 1 357 632 189 466 2.26e-56 199
MS.gene42604.t1 AT5G18320 35.128 390 226 11 255 629 72 449 9.83e-56 196
MS.gene42604.t1 AT1G67530 27.545 668 381 19 60 632 52 711 4.25e-55 201
MS.gene42604.t1 AT1G67530 27.545 668 381 19 60 632 52 711 4.25e-55 201
MS.gene42604.t1 AT1G67530 27.545 668 381 19 60 632 52 711 4.25e-55 201
MS.gene42604.t1 AT1G10560 27.871 653 409 18 27 637 52 684 2.84e-53 195
MS.gene42604.t1 AT3G07360 35.494 324 190 8 317 628 1 317 3.77e-53 186
MS.gene42604.t1 AT3G07360 35.494 324 190 8 317 628 1 317 3.77e-53 186
MS.gene42604.t1 AT3G07360 35.494 324 190 8 317 628 1 317 3.77e-53 186
MS.gene42604.t1 AT3G07360 35.494 324 190 8 317 628 1 317 3.77e-53 186
MS.gene42604.t1 AT3G07360 35.494 324 190 8 317 628 1 317 3.77e-53 186
MS.gene42604.t1 AT3G07360 35.494 324 190 8 317 628 1 317 3.77e-53 186
MS.gene42604.t1 AT3G07360 35.494 324 190 8 317 628 1 317 3.77e-53 186
MS.gene42604.t1 AT3G07360 35.494 324 190 8 317 628 1 317 3.77e-53 186
MS.gene42604.t1 AT3G07360 35.494 324 190 8 317 628 1 317 3.77e-53 186
MS.gene42604.t1 AT1G27910 26.126 666 394 17 60 634 52 710 2.91e-49 184
MS.gene42604.t1 AT4G21350 32.361 377 236 7 255 626 5 367 2.68e-48 174
MS.gene42604.t1 AT3G19380 34.301 379 213 13 255 610 14 379 1.92e-41 156
MS.gene42604.t1 AT5G62560 35.971 278 171 3 354 626 237 512 1.10e-39 154
MS.gene42604.t1 AT5G62560 23.990 396 258 11 250 611 26 412 2.24e-14 77.0
MS.gene42604.t1 AT5G18340 32.692 364 210 13 210 546 15 370 1.24e-39 152
MS.gene42604.t1 AT1G49780 32.741 394 230 12 255 624 14 396 5.88e-39 149
MS.gene42604.t1 AT2G35930 30.789 393 244 12 255 629 12 394 1.93e-36 142
MS.gene42604.t1 AT5G18330 29.240 342 217 8 255 585 65 392 2.85e-36 142
MS.gene42604.t1 AT5G65200 33.220 295 183 5 354 636 227 519 1.45e-34 139
MS.gene42604.t1 AT5G40140 31.757 296 192 4 333 624 214 503 4.49e-32 131
MS.gene42604.t1 AT5G40140 27.859 341 216 9 255 584 58 379 1.17e-20 96.7
MS.gene42604.t1 AT5G65920 28.499 393 258 10 243 627 48 425 3.34e-31 127
MS.gene42604.t1 AT5G65920 28.499 393 258 10 243 627 48 425 3.34e-31 127
MS.gene42604.t1 AT1G67530 28.664 307 186 7 60 337 52 354 6.53e-31 128
MS.gene42604.t1 AT4G31890 36.900 271 148 10 370 624 162 425 2.09e-30 126
MS.gene42604.t1 AT4G31890 36.900 271 148 10 370 624 162 425 2.09e-30 126
MS.gene42604.t1 AT4G31890 36.900 271 148 10 370 624 162 425 2.09e-30 126
MS.gene42604.t1 AT3G52450 27.869 427 249 15 251 629 3 418 3.60e-30 124
MS.gene42604.t1 AT3G47820 32.384 281 180 5 354 626 208 486 4.64e-28 119
MS.gene42604.t1 AT3G49810 28.084 381 251 10 255 627 64 429 1.53e-27 116
MS.gene42604.t1 AT1G66160 26.633 398 246 16 255 629 33 407 2.84e-27 115
MS.gene42604.t1 AT2G25130 35.075 268 150 10 374 624 132 392 1.25e-26 114
MS.gene42604.t1 AT5G09800 27.157 394 245 14 255 624 11 386 5.16e-26 111
MS.gene42604.t1 AT1G08315 29.966 297 187 9 348 624 4 299 9.75e-25 105
MS.gene42604.t1 AT5G37490 24.936 393 264 11 255 627 31 412 1.48e-24 107
MS.gene42604.t1 AT5G14510 34.173 278 170 8 354 623 3 275 4.06e-24 104
MS.gene42604.t1 AT5G64660 27.451 408 238 14 255 624 10 397 1.92e-22 100
MS.gene42604.t1 AT4G12710 27.000 300 176 5 338 633 77 337 2.15e-19 91.3
MS.gene42604.t1 AT1G66160 24.372 398 239 17 255 629 33 391 4.63e-18 87.4
MS.gene42604.t1 AT3G18710 23.450 371 238 13 247 590 4 355 3.59e-17 84.7
MS.gene42604.t1 AT3G03440 28.223 287 167 4 339 623 92 341 5.16e-17 84.3
MS.gene42604.t1 AT4G36550 43.243 74 42 0 255 328 219 292 6.30e-16 82.0
MS.gene42604.t1 AT1G76390 25.255 392 239 14 238 584 4 386 2.64e-15 80.1
MS.gene42604.t1 AT1G76390 25.255 392 239 14 238 584 4 386 2.64e-15 80.1
MS.gene42604.t1 AT1G20780 28.033 239 141 5 259 489 27 242 4.17e-15 79.7
MS.gene42604.t1 AT1G20780 28.033 239 141 5 259 489 27 242 4.17e-15 79.7
MS.gene42604.t1 AT1G20780 28.033 239 141 5 259 489 27 242 4.17e-15 79.7
MS.gene42604.t1 AT1G01680 47.222 72 38 0 254 325 232 303 9.03e-15 76.3
MS.gene42604.t1 AT2G45920 44.578 83 43 1 243 325 316 395 1.44e-14 76.6
MS.gene42604.t1 AT1G01660 40.217 92 50 2 235 326 483 569 3.63e-14 76.3
MS.gene42604.t1 AT1G01660 40.217 92 50 2 235 326 482 568 4.20e-14 75.9
MS.gene42604.t1 AT3G11840 45.556 90 47 2 247 335 2 90 5.11e-14 75.5
MS.gene42604.t1 AT2G44900 33.766 154 99 1 382 532 599 752 6.19e-14 75.9
MS.gene42604.t1 AT2G44900 33.766 154 99 1 382 532 599 752 6.19e-14 75.9
MS.gene42604.t1 AT3G60350 31.461 178 117 2 382 554 590 767 1.72e-13 74.7
MS.gene42604.t1 AT3G60350 31.461 178 117 2 382 554 590 767 1.72e-13 74.7
MS.gene42604.t1 AT5G65500 39.216 102 60 1 222 321 680 781 2.97e-13 73.6
MS.gene42604.t1 AT5G65500 39.216 102 60 1 222 321 688 789 3.01e-13 73.6
MS.gene42604.t1 AT3G61390 41.892 74 41 1 248 321 273 344 4.83e-13 71.6
MS.gene42604.t1 AT3G61390 41.892 74 41 1 248 321 348 419 8.23e-13 71.2
MS.gene42604.t1 AT5G13060 31.034 203 134 5 353 551 227 427 1.09e-12 71.6
MS.gene42604.t1 AT2G45910 40.000 95 52 3 231 325 744 833 1.86e-12 71.2
MS.gene42604.t1 AT2G45910 40.000 95 52 3 231 325 744 833 1.86e-12 71.2
MS.gene42604.t1 AT1G56040 49.231 65 33 0 256 320 354 418 2.20e-12 70.1
MS.gene42604.t1 AT2G27430 29.577 284 179 11 353 624 79 353 2.47e-12 70.1
MS.gene42604.t1 AT1G68940 28.689 244 139 8 248 482 293 510 5.31e-12 69.7
MS.gene42604.t1 AT1G68940 28.689 244 139 8 248 482 240 457 6.36e-12 69.7
MS.gene42604.t1 AT1G68940 28.689 244 139 8 248 482 293 510 6.70e-12 69.3
MS.gene42604.t1 AT5G57035 43.939 66 37 0 256 321 709 774 9.54e-12 68.9

Find 166 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCAATTTGTGCATTTATC+AGG 0.177369 4.2:+41405806 MS.gene42604:CDS
TCCTTTGTTACTCTCATATA+TGG 0.195722 4.2:-41405571 None:intergenic
CTGCATTCTCTTTGTTCCTT+GGG 0.231918 4.2:-41406019 None:intergenic
GCAGTAAGTGGTGGGGATCC+AGG 0.247820 4.2:+41404273 MS.gene42604:CDS
AAGGTTACAATTGGTTCTTC+AGG 0.278194 4.2:+41405711 MS.gene42604:CDS
GGATGAAGCGTTGGCCATTT+TGG 0.278879 4.2:+41405908 MS.gene42604:CDS
TTCAGTTATCGATGAAAATA+AGG 0.279171 4.2:+41405692 MS.gene42604:CDS
CAGCATCTTTCTTACCCCTT+TGG 0.282789 4.2:-41405773 None:intergenic
AGCATCTTTCTTACCCCTTT+GGG 0.282881 4.2:-41405772 None:intergenic
GCTGCATTCTCTTTGTTCCT+TGG 0.285240 4.2:-41406020 None:intergenic
ACTAGCCAAAATTGCCAAAA+TGG 0.285425 4.2:-41405922 None:intergenic
GCTAAGGAACTTCTCAGATT+TGG 0.295867 4.2:+41402004 MS.gene42604:CDS
ACAGCAAAAGGTGTTTCTTC+AGG 0.311919 4.2:+41404381 MS.gene42604:CDS
CTTCACACCATTGTTCTATC+AGG 0.313644 4.2:-41405257 None:intergenic
CCAATGGCAGCTTTCCCTTC+AGG 0.315540 4.2:-41405948 None:intergenic
GCAGCTGATCTCTGGTCTTC+AGG 0.329317 4.2:-41405402 None:intergenic
TCAATCTTACTTCGCTCAGC+TGG 0.330557 4.2:-41405348 None:intergenic
GACCACCGGATGTGAGCTTT+TGG 0.331751 4.2:-41405380 None:intergenic
CAGGCTGATGCTGATTTACT+TGG 0.340262 4.2:-41405321 None:intergenic
TGCTCTTGAGTTCGGGAGTC+TGG 0.340307 4.2:-41405522 None:intergenic
ATCTTCTCGATGCGCGCCCC+TGG 0.352916 4.2:-41404291 None:intergenic
TCCTTTGTTTGAAGAGATAA+GGG 0.360810 4.2:+41401913 MS.gene42604:CDS
TGCAGAGGCAGTGCCGGTTT+TGG 0.360889 4.2:+41405974 MS.gene42604:CDS
TGAAGGAAGCAAGATTTATA+TGG 0.361351 4.2:+41402030 MS.gene42604:CDS
TAACAGCGTGCTCTTGAGTT+CGG 0.361836 4.2:-41405530 None:intergenic
TTTACTTGGCTCAGAAGTGC+TGG 0.364982 4.2:-41405307 None:intergenic
GTTTCTTCCGGAGCAGTTCC+AGG 0.384381 4.2:+41405600 MS.gene42604:CDS
TCTTCATACAACTTGGCATC+TGG 0.398945 4.2:-41404117 None:intergenic
TTCCTTTGTTTGAAGAGATA+AGG 0.399504 4.2:+41401912 MS.gene42604:CDS
TCAGAAGTGCTGGGTCGTTT+TGG 0.401535 4.2:-41405297 None:intergenic
GGTGCAATCCCTCTCCTTGT+TGG 0.402601 4.2:+41405486 MS.gene42604:CDS
AACAGCGTGCTCTTGAGTTC+GGG 0.403224 4.2:-41405529 None:intergenic
GCATAGTTCATGTGCTGAAA+AGG 0.405067 4.2:+41405622 MS.gene42604:CDS
AGCAGACAAACTGCAATTGA+TGG 0.407067 4.2:+41404203 MS.gene42604:CDS
GATGGCTCCATTGTTGGAAT+TGG 0.407719 4.2:+41406109 MS.gene42604:CDS
TTGGTAGAGTTTATTGGGAA+TGG 0.407949 4.2:+41405993 MS.gene42604:CDS
ATCATCAATTCCAAGGAAAT+CGG 0.412207 4.2:-41404471 None:intergenic
GATGAAAATAAGGTTACAAT+TGG 0.415858 4.2:+41405702 MS.gene42604:CDS
GATTTCCTTGGAATTGATGA+TGG 0.417773 4.2:+41404473 MS.gene42604:CDS
TCTCTCCGGCAGCTGATCTC+TGG 0.418758 4.2:-41405410 None:intergenic
TGGTTCATCAACTCTCCCTT+TGG 0.425568 4.2:-41404097 None:intergenic
CAGTAAGTGGTGGGGATCCA+GGG 0.426760 4.2:+41404274 MS.gene42604:CDS
CAATCTTACTTCGCTCAGCT+GGG 0.433494 4.2:-41405347 None:intergenic
TTCAGCACATGAACTATGCC+TGG 0.440688 4.2:-41405618 None:intergenic
ACTTCGCTCAGCTGGGGTGC+AGG 0.441160 4.2:-41405340 None:intergenic
CCAATAAACTCTACCAAAAC+CGG 0.442490 4.2:-41405987 None:intergenic
CAGGCTTCGTAAGACATAGT+TGG 0.445273 4.2:-41405238 None:intergenic
AAAGGAAGCATTGTTTCTTC+CGG 0.446293 4.2:+41405588 MS.gene42604:CDS
CATAGTTCATGTGCTGAAAA+GGG 0.446723 4.2:+41405623 MS.gene42604:CDS
AGGGGTGATGGCTCCATTGT+TGG 0.452643 4.2:+41406103 MS.gene42604:CDS
CACTGCCTCTGCAGCACCAA+TGG 0.454880 4.2:-41405964 None:intergenic
AGTAAACGTGGTGATTGATT+TGG 0.457278 4.2:+41401805 MS.gene42604:CDS
GATCCTGTCATTGTTTCAAC+AGG 0.460722 4.2:+41404495 MS.gene42604:CDS
CATTTAAAATCACTAGGAAT+AGG 0.461344 4.2:-41404447 None:intergenic
CGATGATATCCATCCACCTT+TGG 0.462065 4.2:+41406250 MS.gene42604:CDS
GGATATGTCAAGTTTATCAT+AGG 0.464570 4.2:-41403862 None:intergenic
CTATGAGGTGACAGCTCGGT+TGG 0.464861 4.2:+41403818 MS.gene42604:CDS
TGGTGCTGCAGAGGCAGTGC+CGG 0.466838 4.2:+41405968 MS.gene42604:CDS
AAGGGGAAGCATGGAAGCTC+GGG 0.473966 4.2:+41405641 MS.gene42604:CDS
GATGATACTAAAACAGCAAA+AGG 0.474082 4.2:+41404369 MS.gene42604:CDS
TTCAATTTGTGCATTTATCA+GGG 0.475536 4.2:+41405807 MS.gene42604:CDS
TACCTGCTCTTTAACTTCAT+CGG 0.476627 4.2:-41403883 None:intergenic
GATCAGCTGCCGGAGAGATC+CGG 0.476956 4.2:+41405415 MS.gene42604:CDS
CTTCTCAGATTTGGTTGTGA+AGG 0.479378 4.2:+41402013 MS.gene42604:CDS
CATAGAAATTATTCATGATC+CGG 0.482794 4.2:-41403800 None:intergenic
AGCTCGGTTGGAACAATCAC+TGG 0.485729 4.2:+41403830 MS.gene42604:CDS
TACAGGTCCTTGAGAGGGAC+CGG 0.487024 4.2:+41403781 MS.gene42604:intron
GGCACAAGAGCTAGGGGTGA+TGG 0.490630 4.2:+41406091 MS.gene42604:CDS
CAATATTGCTTCTTCACCAT+AGG 0.491132 4.2:-41401860 None:intergenic
AACTATGCCTGGAACTGCTC+CGG 0.492510 4.2:-41405607 None:intergenic
GCTAATCGACTTAGAACAGC+TGG 0.505726 4.2:-41404183 None:intergenic
TATGAGCAGGATCCGTGAGC+AGG 0.507208 4.2:+41406184 MS.gene42604:CDS
CGTGTAGCTATTGCTGAAGC+TGG 0.512659 4.2:+41405465 MS.gene42604:CDS
ATAGCACAGGCACAAGAGCT+AGG 0.513018 4.2:+41406083 MS.gene42604:CDS
TGTCATTGTTTCAACAGGAC+AGG 0.513071 4.2:+41404500 MS.gene42604:CDS
TGCAAGAAGCCGGATCTCTC+CGG 0.513959 4.2:-41405424 None:intergenic
TTAAAATCACTAGGAATAGG+AGG 0.515426 4.2:-41404444 None:intergenic
TGCATTCTCTTTGTTCCTTG+GGG 0.517239 4.2:-41406018 None:intergenic
ATCCGATGAAGTTAAAGAGC+AGG 0.517885 4.2:+41403881 MS.gene42604:CDS
AGGCTTCGTAAGACATAGTT+GGG 0.521487 4.2:-41405237 None:intergenic
GAATGATACTTCAAAAGCGT+TGG 0.522140 4.2:+41401955 MS.gene42604:CDS
GTGCATTTATCAGGGAAACA+AGG 0.522425 4.2:+41405815 MS.gene42604:CDS
TTGTTGGAATTGGCTCAAAA+CGG 0.523595 4.2:+41406119 MS.gene42604:CDS
GATGTTATTGAAGAAGATAA+AGG 0.525502 4.2:+41404317 MS.gene42604:CDS
GATTGCTGACAGAACCTAGC+GGG 0.527827 4.2:+41405877 MS.gene42604:CDS
TAGCACAGGCACAAGAGCTA+GGG 0.528830 4.2:+41406084 MS.gene42604:CDS
AGCTGCCATTGGTGCTGCAG+AGG 0.529056 4.2:+41405959 MS.gene42604:CDS
TCATGATCCGGTCCCTCTCA+AGG 0.529227 4.2:-41403788 None:intergenic
AGTGGTTGCAAGACGGCCAC+GGG 0.529594 4.2:+41405169 MS.gene42604:CDS
AAGTGGTTGCAAGACGGCCA+CGG 0.537005 4.2:+41405168 MS.gene42604:CDS
GCTGAGTGAGGGTACCCAAA+GGG 0.538821 4.2:+41405758 MS.gene42604:CDS
AGATGCTCTTGATTCAGCTA+AGG 0.539952 4.2:+41401988 MS.gene42604:CDS
CTTATCCAAAAGCTCACATC+CGG 0.540128 4.2:+41405375 MS.gene42604:CDS
CATCTCAGACTTCAGACCTA+TGG 0.543799 4.2:+41401844 MS.gene42604:CDS
CCTGAAGGGAAAGCTGCCAT+TGG 0.544099 4.2:+41405948 MS.gene42604:CDS
AAAGGGGAAGCATGGAAGCT+CGG 0.545017 4.2:+41405640 MS.gene42604:CDS
GTCAGCAATCGCATCAGCGT+CGG 0.546901 4.2:-41405864 None:intergenic
TGCATTTATCAGGGAAACAA+GGG 0.547628 4.2:+41405816 MS.gene42604:CDS
TTACTTGGCTCAGAAGTGCT+GGG 0.549928 4.2:-41405306 None:intergenic
GGTTAATGACCAAAGGTGGA+TGG 0.555167 4.2:-41406259 None:intergenic
ACTCAGTTCAGAAGAGCCAA+AGG 0.555212 4.2:+41404081 MS.gene42604:CDS
AAGGGAAAAGCAGTGAGGGC+TGG 0.555419 4.2:+41405834 MS.gene42604:CDS
ATCACTCGCTTTGCATGAGA+TGG 0.556433 4.2:+41404248 MS.gene42604:CDS
CTCAGTTCAGAAGAGCCAAA+GGG 0.557986 4.2:+41404082 MS.gene42604:CDS
GATCATGAATAATTTCTATG+AGG 0.559240 4.2:+41403803 MS.gene42604:CDS
GCAGACAAACTGCAATTGAT+GGG 0.560859 4.2:+41404204 MS.gene42604:CDS
GGGAATGGTGGATGAAGCGT+TGG 0.562828 4.2:+41405899 MS.gene42604:CDS
CATGAGATGGTGGCAGTAAG+TGG 0.567653 4.2:+41404261 MS.gene42604:CDS
AATTGATAGAGCGTATGAGC+AGG 0.569133 4.2:+41406171 MS.gene42604:CDS
AGATGGTGGCAGTAAGTGGT+GGG 0.569143 4.2:+41404265 MS.gene42604:CDS
CTTCATGCTGCTCCTGCTCA+CGG 0.570131 4.2:-41406196 None:intergenic
CATGTTTACAGGTCCTTGAG+AGG 0.570970 4.2:+41403775 MS.gene42604:intron
TTGAGTTCGGGAGTCTGGCA+CGG 0.571664 4.2:-41405517 None:intergenic
AGCGTTCTTGTATTGAGAAG+TGG 0.572077 4.2:+41405151 MS.gene42604:CDS
GCTCAAAACGGCACGGACAG+AGG 0.572383 4.2:+41406131 MS.gene42604:CDS
AGTAAGTGGTGGGGATCCAG+GGG 0.572444 4.2:+41404275 MS.gene42604:CDS
TCCCTTATCTCTTCAAACAA+AGG 0.573213 4.2:-41401914 None:intergenic
TCTCTGGTCTTCAGGACCAC+CGG 0.574184 4.2:-41405394 None:intergenic
TGACATATCTTCATACAACT+TGG 0.576837 4.2:-41404124 None:intergenic
AGGATCCATCATCAATTCCA+AGG 0.577421 4.2:-41404478 None:intergenic
ATGTTTACAGGTCCTTGAGA+GGG 0.582183 4.2:+41403776 MS.gene42604:intron
GAAGACCAGAGATCAGCTGC+CGG 0.583019 4.2:+41405405 MS.gene42604:CDS
TCAAGGTTAATGACCAAAGG+TGG 0.584812 4.2:-41406263 None:intergenic
TTCAGGAGCGATATCACCAC+TGG 0.585502 4.2:+41405728 MS.gene42604:CDS
TAAAATCACTAGGAATAGGA+GGG 0.588591 4.2:-41404443 None:intergenic
TGTGCTGAAAAGGGGAAGCA+TGG 0.589167 4.2:+41405632 MS.gene42604:CDS
TTATAAGTTATAACCATGGA+AGG 0.592122 4.2:+41401776 None:intergenic
AATCTTACTTCGCTCAGCTG+GGG 0.595667 4.2:-41405346 None:intergenic
TCCATATATGAGAGTAACAA+AGG 0.598454 4.2:+41405570 MS.gene42604:CDS
AAACAAGGGAAAAGCAGTGA+GGG 0.602719 4.2:+41405830 MS.gene42604:CDS
AAAATCACTAGGAATAGGAG+GGG 0.606405 4.2:-41404442 None:intergenic
ACTCGCTTTGCATGAGATGG+TGG 0.606609 4.2:+41404251 MS.gene42604:CDS
TGCTGAGTGAGGGTACCCAA+AGG 0.607211 4.2:+41405757 MS.gene42604:CDS
AGAGGAGACCAACAAGGAGA+GGG 0.607714 4.2:-41405494 None:intergenic
GAACAATGGTGTGAAGCCAA+TGG 0.610641 4.2:+41405264 MS.gene42604:CDS
GAGAGGAGACCAACAAGGAG+AGG 0.611374 4.2:-41405495 None:intergenic
ACAAAGGTGAACTAAAACCG+CGG 0.611799 4.2:-41406042 None:intergenic
GCAAATAGAAAACCTAGTCA+AGG 0.613079 4.2:+41404347 MS.gene42604:CDS
GTTGGGTGTGAGAACAGTAC+TGG 0.615065 4.2:-41405220 None:intergenic
TGTCCTGTTGAAACAATGAC+AGG 0.617108 4.2:-41404498 None:intergenic
ATTTCTATGAGGTGACAGCT+CGG 0.624398 4.2:+41403814 MS.gene42604:CDS
GAGATGGTGGCAGTAAGTGG+TGG 0.629382 4.2:+41404264 MS.gene42604:CDS
ATTGAGAAGTGGTTGCAAGA+CGG 0.630106 4.2:+41405162 MS.gene42604:CDS
ATCCAAAAGCTCACATCCGG+TGG 0.631621 4.2:+41405378 MS.gene42604:CDS
CTGAGTGAGGGTACCCAAAG+GGG 0.636025 4.2:+41405759 MS.gene42604:CDS
ATAGTTCATGTGCTGAAAAG+GGG 0.637932 4.2:+41405624 MS.gene42604:CDS
CTGGTGACACTGCTGAGTGA+GGG 0.639920 4.2:+41405747 MS.gene42604:CDS
AGATCGACAGTATATAGCAC+AGG 0.640908 4.2:+41406070 MS.gene42604:CDS
CAGCTTCAGCAATAGCTACA+CGG 0.643002 4.2:-41405464 None:intergenic
ATTGCTGACAGAACCTAGCG+GGG 0.645182 4.2:+41405878 MS.gene42604:CDS
ACTGGTGACACTGCTGAGTG+AGG 0.651330 4.2:+41405746 MS.gene42604:CDS
TTCGGGAGTCTGGCACGGAG+AGG 0.652328 4.2:-41405512 None:intergenic
GGAATTGGCTCAAAACGGCA+CGG 0.652671 4.2:+41406124 MS.gene42604:CDS
GAACAAAGAGAATGCAGCCG+CGG 0.660054 4.2:+41406025 MS.gene42604:CDS
GCACGGAGAGGAGACCAACA+AGG 0.663191 4.2:-41405500 None:intergenic
TACGAAGCCTGATAGAACAA+TGG 0.663686 4.2:+41405250 MS.gene42604:CDS
AGCACAGGCACAAGAGCTAG+GGG 0.668550 4.2:+41406085 MS.gene42604:CDS
ACTGTCGATCTCCAGAACAA+AGG 0.679279 4.2:-41406058 None:intergenic
AATATTGCAACTTAGCACGA+AGG 0.688983 4.2:+41401876 MS.gene42604:CDS
TCACTCAGCAGTGTCACCAG+TGG 0.691086 4.2:-41405744 None:intergenic
ATCGGACATTTAAAATCACT+AGG 0.691184 4.2:-41404453 None:intergenic
GATGGTGGCAGTAAGTGGTG+GGG 0.697446 4.2:+41404266 MS.gene42604:CDS
GAAACAAGGGAAAAGCAGTG+AGG 0.704489 4.2:+41405829 MS.gene42604:CDS
TTGCTGACAGAACCTAGCGG+GGG 0.734349 4.2:+41405879 MS.gene42604:CDS
TTATTGGGAATGGATCCCCA+AGG 0.739408 4.2:+41406003 MS.gene42604:CDS
CGATTGCTGACAGAACCTAG+CGG 0.740963 4.2:+41405876 MS.gene42604:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTGTATAAAAAATTGA+AGG + chr4.2:41405014-41405033 MS.gene42604:intron 10.0%
!! AAAATAAAAAAATTGTAGTG+TGG - chr4.2:41403994-41404013 None:intergenic 15.0%
!! AAGTTTCTGTAATTATTAAA+TGG - chr4.2:41404730-41404749 None:intergenic 15.0%
!! AATTATCATGCTATATATTA+TGG + chr4.2:41403066-41403085 MS.gene42604:intron 15.0%
!! ATTAGATACACAATATTAAT+TGG - chr4.2:41403520-41403539 None:intergenic 15.0%
!! CAAAGTTAAAAAAAAAAACA+TGG - chr4.2:41403157-41403176 None:intergenic 15.0%
!! TAAAAAAAAATTATTCTGCT+TGG + chr4.2:41402154-41402173 MS.gene42604:intron 15.0%
!! TATATATTGATGAATTTCTT+TGG + chr4.2:41404966-41404985 MS.gene42604:intron 15.0%
!! TGTCATATATATATTTATTG+CGG + chr4.2:41403916-41403935 MS.gene42604:intron 15.0%
!! TTTACAATATTTGTACTATT+TGG + chr4.2:41403491-41403510 MS.gene42604:intron 15.0%
!! TTTCATTTCTATTGTTAAAA+AGG + chr4.2:41402789-41402808 MS.gene42604:intron 15.0%
!!! ATTGATAACTAATAATAGTA+AGG - chr4.2:41404765-41404784 None:intergenic 15.0%
!!! ATTTTAAAATTTCTTCTCTA+TGG + chr4.2:41404891-41404910 MS.gene42604:intron 15.0%
!!! ATTTTTGATTGAATTTGTAT+TGG + chr4.2:41402323-41402342 MS.gene42604:intron 15.0%
!!! CATGTTTTTTTTTTTAACTT+TGG + chr4.2:41403155-41403174 MS.gene42604:intron 15.0%
!!! GTATTTCTTTTTATCTATAT+GGG + chr4.2:41403553-41403572 MS.gene42604:intron 15.0%
!!! TAAAAAAAAAAACATGGTTT+TGG - chr4.2:41403151-41403170 None:intergenic 15.0%
!!! TGTATTTCTTTTTATCTATA+TGG + chr4.2:41403552-41403571 MS.gene42604:intron 15.0%
!!! TTTAACTCAATTTTAAGAAT+GGG - chr4.2:41403667-41403686 None:intergenic 15.0%
!!! TTTGTAATTAGATTTGTTTA+TGG + chr4.2:41402384-41402403 MS.gene42604:intron 15.0%
!!! TTTTAACAATAGAAATGAAA+GGG - chr4.2:41402789-41402808 None:intergenic 15.0%
!!! TTTTTAACAATAGAAATGAA+AGG - chr4.2:41402790-41402809 None:intergenic 15.0%
!! AATAGATCTAAAGGTTTATT+TGG + chr4.2:41404677-41404696 MS.gene42604:intron 20.0%
!! ACAAAAATCCATAATTATGA+AGG - chr4.2:41402423-41402442 None:intergenic 20.0%
!! GTCTTTACTATTAATTAAAG+CGG + chr4.2:41402634-41402653 MS.gene42604:intron 20.0%
!! TATATATTATGGATCATGAT+CGG + chr4.2:41403077-41403096 MS.gene42604:intron 20.0%
!! TTTAACAATAGAAATGAAAG+GGG - chr4.2:41402788-41402807 None:intergenic 20.0%
!!! AATTTTCTCAATAGATCTAA+AGG + chr4.2:41404668-41404687 MS.gene42604:intron 20.0%
!!! ATTTTACAATTATTATCGAG+GGG + chr4.2:41402665-41402684 MS.gene42604:intron 20.0%
!!! CATTTTACAATTATTATCGA+GGG + chr4.2:41402664-41402683 MS.gene42604:intron 20.0%
!!! GTTTAACTCAATTTTAAGAA+TGG - chr4.2:41403668-41403687 None:intergenic 20.0%
!!! TAATTAGATTTGTTTATGGT+TGG + chr4.2:41402388-41402407 MS.gene42604:intron 20.0%
!!! TCATTTTACAATTATTATCG+AGG + chr4.2:41402663-41402682 MS.gene42604:intron 20.0%
!!! TCTATTGTTAAAAAGGATTT+TGG + chr4.2:41402796-41402815 MS.gene42604:intron 20.0%
! AAGTGAAACCTTCATAATTA+TGG + chr4.2:41402412-41402431 MS.gene42604:intron 25.0%
! AGCATGATAATTAAACATCA+AGG - chr4.2:41403058-41403077 None:intergenic 25.0%
! AGTTAAACCAATATACTTAG+AGG + chr4.2:41403680-41403699 MS.gene42604:intron 25.0%
! ATAATAGTAAGGTGAAAACA+AGG - chr4.2:41404754-41404773 None:intergenic 25.0%
! ATACTCTCTTATAGACATTA+AGG + chr4.2:41404538-41404557 MS.gene42604:intron 25.0%
! CAGAACTATCTTAATAACAA+TGG - chr4.2:41403243-41403262 None:intergenic 25.0%
! CATAGAAATTATTCATGATC+CGG - chr4.2:41403803-41403822 None:intergenic 25.0%
! CATATATATATTTATTGCGG+TGG + chr4.2:41403919-41403938 MS.gene42604:intron 25.0%
! CTATTGAGATTTAATGTAGT+CGG + chr4.2:41404914-41404933 MS.gene42604:intron 25.0%
! GATCATGAATAATTTCTATG+AGG + chr4.2:41403803-41403822 MS.gene42604:CDS 25.0%
! GATGAAAATAAGGTTACAAT+TGG + chr4.2:41405702-41405721 MS.gene42604:CDS 25.0%
! GATGTTATTGAAGAAGATAA+AGG + chr4.2:41404317-41404336 MS.gene42604:CDS 25.0%
! GCATGATAATTAAACATCAA+GGG - chr4.2:41403057-41403076 None:intergenic 25.0%
! GTTAAAAAGGTAAAATGTAG+AGG + chr4.2:41403293-41403312 MS.gene42604:intron 25.0%
! GTTAAACCAATATACTTAGA+GGG + chr4.2:41403681-41403700 MS.gene42604:intron 25.0%
! TATCATTCTTGACTTCAATT+TGG + chr4.2:41404575-41404594 MS.gene42604:intron 25.0%
! TTAACAATAGAAATGAAAGG+GGG - chr4.2:41402787-41402806 None:intergenic 25.0%
! TTCAATTTGTGCATTTATCA+GGG + chr4.2:41405807-41405826 MS.gene42604:CDS 25.0%
! TTCAGTTATCGATGAAAATA+AGG + chr4.2:41405692-41405711 MS.gene42604:CDS 25.0%
!! ATGGATTTTTGTGCTAAATT+GGG + chr4.2:41402431-41402450 MS.gene42604:intron 25.0%
!! CATTGTTATTAAGATAGTTC+TGG + chr4.2:41403241-41403260 MS.gene42604:intron 25.0%
!! CATTTAAAATCACTAGGAAT+AGG - chr4.2:41404450-41404469 None:intergenic 25.0%
!! CTCTCATTTTACTAACAAAA+AGG + chr4.2:41404836-41404855 MS.gene42604:intron 25.0%
!! TACTAAATTTTGCAAAAACC+TGG - chr4.2:41403443-41403462 None:intergenic 25.0%
!! TATGGATTTTTGTGCTAAAT+TGG + chr4.2:41402430-41402449 MS.gene42604:intron 25.0%
!! TGGTATTCAATTCAATGTTT+TGG + chr4.2:41402524-41402543 MS.gene42604:intron 25.0%
!! TTCTGATTTTTGATCTTGTA+TGG + chr4.2:41402504-41402523 MS.gene42604:intron 25.0%
!! TTTTACAATTATTATCGAGG+GGG + chr4.2:41402666-41402685 MS.gene42604:intron 25.0%
!! TTTTGGATGTAATCTGTTAA+AGG + chr4.2:41402541-41402560 MS.gene42604:intron 25.0%
!!! CATTTTGAGAATATATTGCA+TGG + chr4.2:41402454-41402473 MS.gene42604:intron 25.0%
!!! GGGATTGATTTTTTTATGAT+TGG + chr4.2:41402183-41402202 MS.gene42604:intron 25.0%
!!! TTGTTTTGATTCATGTTTAC+AGG + chr4.2:41403764-41403783 MS.gene42604:intron 25.0%
AAAATGTCAATAATGCACAC+TGG - chr4.2:41405053-41405072 None:intergenic 30.0%
AAATTCTTCTGTCGATATTC+AGG - chr4.2:41402763-41402782 None:intergenic 30.0%
AACAACTGAATCAACATCTA+AGG - chr4.2:41403749-41403768 None:intergenic 30.0%
AACATCAAGGGTAAAATGTT+TGG - chr4.2:41403045-41403064 None:intergenic 30.0%
AATTATTCTGCTTGGTTATG+TGG + chr4.2:41402162-41402181 MS.gene42604:intron 30.0%
AATTCTTCTGTCGATATTCA+GGG - chr4.2:41402762-41402781 None:intergenic 30.0%
AGAAAATTGTGTAAAGAGCA+TGG - chr4.2:41404656-41404675 None:intergenic 30.0%
ATATCTTCAGATTTCACATC+TGG - chr4.2:41402892-41402911 None:intergenic 30.0%
ATCATCAATTCCAAGGAAAT+CGG - chr4.2:41404474-41404493 None:intergenic 30.0%
ATTATTCTGCTTGGTTATGT+GGG + chr4.2:41402163-41402182 MS.gene42604:intron 30.0%
CTCTTATAGACATTAAGGTT+TGG + chr4.2:41404543-41404562 MS.gene42604:intron 30.0%
CTTCAATTTGTGCATTTATC+AGG + chr4.2:41405806-41405825 MS.gene42604:CDS 30.0%
GAATATATTGCATGGTGTTT+AGG + chr4.2:41402462-41402481 MS.gene42604:intron 30.0%
GATGATACTAAAACAGCAAA+AGG + chr4.2:41404369-41404388 MS.gene42604:CDS 30.0%
GGATATGTCAAGTTTATCAT+AGG - chr4.2:41403865-41403884 None:intergenic 30.0%
TAAAATCACTAGGAATAGGA+GGG - chr4.2:41404446-41404465 None:intergenic 30.0%
TCATCCAGGAAATATTGAAA+AGG - chr4.2:41404811-41404830 None:intergenic 30.0%
TCCATATATGAGAGTAACAA+AGG + chr4.2:41405570-41405589 MS.gene42604:CDS 30.0%
TCCTTTGTTACTCTCATATA+TGG - chr4.2:41405574-41405593 None:intergenic 30.0%
TGAAGGAAGCAAGATTTATA+TGG + chr4.2:41402030-41402049 MS.gene42604:CDS 30.0%
TGACATATCTTCATACAACT+TGG - chr4.2:41404127-41404146 None:intergenic 30.0%
TTAAAATCACTAGGAATAGG+AGG - chr4.2:41404447-41404466 None:intergenic 30.0%
TTGGTAAGATTATAGCTGTT+TGG + chr4.2:41403174-41403193 MS.gene42604:intron 30.0%
TTTAAGAATGGGATTCACAA+GGG - chr4.2:41403656-41403675 None:intergenic 30.0%
! ACTAAACCCTCTTTTATCAA+AGG + chr4.2:41403113-41403132 MS.gene42604:intron 30.0%
! ATAGCCTTTTCAATATTTCC+TGG + chr4.2:41404804-41404823 MS.gene42604:intron 30.0%
! ATCGGACATTTAAAATCACT+AGG - chr4.2:41404456-41404475 None:intergenic 30.0%
! GTTTAGGAAGTGTATTGAAA+AGG + chr4.2:41402478-41402497 MS.gene42604:intron 30.0%
! TCAATGATTTGTCCCAAAAA+TGG + chr4.2:41404780-41404799 MS.gene42604:intron 30.0%
! TCCTTTGTTTGAAGAGATAA+GGG + chr4.2:41401913-41401932 MS.gene42604:CDS 30.0%
! TGAAAAGGCTATACCATTTT+TGG - chr4.2:41404796-41404815 None:intergenic 30.0%
! TTCCTTTGTTTGAAGAGATA+AGG + chr4.2:41401912-41401931 MS.gene42604:CDS 30.0%
! TTTTAAATGTCCGATTTCCT+TGG + chr4.2:41404461-41404480 MS.gene42604:CDS 30.0%
! TTTTAGTATCATCCTTGACT+AGG - chr4.2:41404362-41404381 None:intergenic 30.0%
! TTTTGCACAGGAAGTTAAAA+AGG + chr4.2:41403280-41403299 MS.gene42604:intron 30.0%
!! GAAAAGGCTATACCATTTTT+GGG - chr4.2:41404795-41404814 None:intergenic 30.0%
!! TGTTAAAAAGGATTTTGGTG+AGG + chr4.2:41402801-41402820 MS.gene42604:intron 30.0%
!! TTTTAAGAATGGGATTCACA+AGG - chr4.2:41403657-41403676 None:intergenic 30.0%
!!! AACGCTTTTGAAGTATCATT+CGG - chr4.2:41401956-41401975 None:intergenic 30.0%
!!! TTTCTTTGGAACACAAGTTT+TGG + chr4.2:41404980-41404999 MS.gene42604:intron 30.0%
AAAATCACTAGGAATAGGAG+GGG - chr4.2:41404445-41404464 None:intergenic 35.0%
AAATGAGAGAATGATCATCC+AGG - chr4.2:41404825-41404844 None:intergenic 35.0%
AATATTGCAACTTAGCACGA+AGG + chr4.2:41401876-41401895 MS.gene42604:CDS 35.0%
AATGCTCCCTCTAAGTATAT+TGG - chr4.2:41403690-41403709 None:intergenic 35.0%
ACTAGCCAAAATTGCCAAAA+TGG - chr4.2:41405925-41405944 None:intergenic 35.0%
AGTAAACGTGGTGATTGATT+TGG + chr4.2:41401805-41401824 MS.gene42604:CDS 35.0%
ATAGCAATGCTTGAAACACT+GGG - chr4.2:41403348-41403367 None:intergenic 35.0%
ATAGTACCAACAGCTTCAAA+AGG - chr4.2:41403006-41403025 None:intergenic 35.0%
ATAGTTCATGTGCTGAAAAG+GGG + chr4.2:41405624-41405643 MS.gene42604:CDS 35.0%
CAATATTGCTTCTTCACCAT+AGG - chr4.2:41401863-41401882 None:intergenic 35.0%
CAGCTTAAAGACCATATTGT+GGG + chr4.2:41402975-41402994 MS.gene42604:intron 35.0%
CATAGTTCATGTGCTGAAAA+GGG + chr4.2:41405623-41405642 MS.gene42604:CDS 35.0%
CATATGAATGTTCTGACCTT+TGG + chr4.2:41403612-41403631 MS.gene42604:intron 35.0%
CCAATAAACTCTACCAAAAC+CGG - chr4.2:41405990-41406009 None:intergenic 35.0%
GATTTCCTTGGAATTGATGA+TGG + chr4.2:41404473-41404492 MS.gene42604:CDS 35.0%
GATTTGAATTCTATTCCGTG+TGG + chr4.2:41402688-41402707 MS.gene42604:intron 35.0%
GCAAATAGAAAACCTAGTCA+AGG + chr4.2:41404347-41404366 MS.gene42604:CDS 35.0%
TAGTACCAACAGCTTCAAAA+GGG - chr4.2:41403005-41403024 None:intergenic 35.0%
TATAGCAATGCTTGAAACAC+TGG - chr4.2:41403349-41403368 None:intergenic 35.0%
TCAGCTTAAAGACCATATTG+TGG + chr4.2:41402974-41402993 MS.gene42604:intron 35.0%
TCCCTTATCTCTTCAAACAA+AGG - chr4.2:41401917-41401936 None:intergenic 35.0%
TGAAAAGGTCAAACTAATCC+AGG + chr4.2:41403422-41403441 MS.gene42604:intron 35.0%
TGCATTTATCAGGGAAACAA+GGG + chr4.2:41405816-41405835 MS.gene42604:CDS 35.0%
TTGGTAGAGTTTATTGGGAA+TGG + chr4.2:41405993-41406012 MS.gene42604:CDS 35.0%
! AAGGTTACAATTGGTTCTTC+AGG + chr4.2:41405711-41405730 MS.gene42604:CDS 35.0%
! AGGGTACCTTTGATAAAAGA+GGG - chr4.2:41403122-41403141 None:intergenic 35.0%
! CATCGAGGCATAATAAGTTT+TGG - chr4.2:41403397-41403416 None:intergenic 35.0%
! GAATGATACTTCAAAAGCGT+TGG + chr4.2:41401955-41401974 MS.gene42604:CDS 35.0%
! GGTGTTTCTTCAGGATTTTA+CGG + chr4.2:41404390-41404409 MS.gene42604:CDS 35.0%
! TACCTGCTCTTTAACTTCAT+CGG - chr4.2:41403886-41403905 None:intergenic 35.0%
! TAGGGTACCTTTGATAAAAG+AGG - chr4.2:41403123-41403142 None:intergenic 35.0%
! TTGTTGGAATTGGCTCAAAA+CGG + chr4.2:41406119-41406138 MS.gene42604:CDS 35.0%
! TTTTGAGCCAATTCCAACAA+TGG - chr4.2:41406119-41406138 None:intergenic 35.0%
! TTTTTACAGTACGTTGTCCA+TGG + chr4.2:41403369-41403388 MS.gene42604:intron 35.0%
!! AAAGGAAGCATTGTTTCTTC+CGG + chr4.2:41405588-41405607 MS.gene42604:CDS 35.0%
!! CATAATAAGTTTTGGCACCA+TGG - chr4.2:41403389-41403408 None:intergenic 35.0%
!! CGGTTTTGGTAGAGTTTATT+GGG + chr4.2:41405988-41406007 MS.gene42604:CDS 35.0%
!!! AAACATGGTTTTGGAATCCT+AGG - chr4.2:41403142-41403161 None:intergenic 35.0%
!!! AACATGGTTTTGGAATCCTA+GGG - chr4.2:41403141-41403160 None:intergenic 35.0%
!!! GTTTTAGTTCACCTTTGTTC+TGG + chr4.2:41406047-41406066 MS.gene42604:CDS 35.0%
!!! TCTTTTATCAAAGGTACCCT+AGG + chr4.2:41403122-41403141 MS.gene42604:intron 35.0%
AAAAGGGAATGCCCACAATA+TGG - chr4.2:41402989-41403008 None:intergenic 40.0%
AAACAAGGGAAAAGCAGTGA+GGG + chr4.2:41405830-41405849 MS.gene42604:CDS 40.0%
AATTCTATTCCGTGTGGTAG+AGG + chr4.2:41402694-41402713 MS.gene42604:intron 40.0%
AATTGATAGAGCGTATGAGC+AGG + chr4.2:41406171-41406190 MS.gene42604:CDS 40.0%
ACAAAGGTGAACTAAAACCG+CGG - chr4.2:41406045-41406064 None:intergenic 40.0%
ACGAACATTTGAGCGACAAA+AGG + chr4.2:41402925-41402944 MS.gene42604:intron 40.0%
AGATCGACAGTATATAGCAC+AGG + chr4.2:41406070-41406089 MS.gene42604:CDS 40.0%
AGATGCTCTTGATTCAGCTA+AGG + chr4.2:41401988-41402007 MS.gene42604:CDS 40.0%
AGCAGACAAACTGCAATTGA+TGG + chr4.2:41404203-41404222 MS.gene42604:CDS 40.0%
AGCGTTCTTGTATTGAGAAG+TGG + chr4.2:41405151-41405170 MS.gene42604:CDS 40.0%
AGGATCCATCATCAATTCCA+AGG - chr4.2:41404481-41404500 None:intergenic 40.0%
AGGCTTCGTAAGACATAGTT+GGG - chr4.2:41405240-41405259 None:intergenic 40.0%
ATCCGATGAAGTTAAAGAGC+AGG + chr4.2:41403881-41403900 MS.gene42604:CDS 40.0%
ATCTGATAACCTCTACCACA+CGG - chr4.2:41402706-41402725 None:intergenic 40.0%
ATGTAACTGTAAGCATGGCA+AGG - chr4.2:41403581-41403600 None:intergenic 40.0%
ATGTTTACAGGTCCTTGAGA+GGG + chr4.2:41403776-41403795 MS.gene42604:intron 40.0%
ATTGAGAAGTGGTTGCAAGA+CGG + chr4.2:41405162-41405181 MS.gene42604:CDS 40.0%
ATTTCTATGAGGTGACAGCT+CGG + chr4.2:41403814-41403833 MS.gene42604:CDS 40.0%
CATGCTTACAGTTACATAGG+AGG + chr4.2:41403584-41403603 MS.gene42604:intron 40.0%
CCTATAATTTCCGAGATCTC+CGG + chr4.2:41402570-41402589 MS.gene42604:intron 40.0%
CGAAGAAGACAAATCGAGTA+CGG - chr4.2:41402606-41402625 None:intergenic 40.0%
CTCCTATGTAACTGTAAGCA+TGG - chr4.2:41403586-41403605 None:intergenic 40.0%
CTGCATTCTCTTTGTTCCTT+GGG - chr4.2:41406022-41406041 None:intergenic 40.0%
CTTATCCAAAAGCTCACATC+CGG + chr4.2:41405375-41405394 MS.gene42604:CDS 40.0%
CTTCACACCATTGTTCTATC+AGG - chr4.2:41405260-41405279 None:intergenic 40.0%
GAAACACTGGGCACAATTAA+AGG - chr4.2:41403336-41403355 None:intergenic 40.0%
GAGCGTAAGATATCTGCAAA+CGG + chr4.2:41404628-41404647 MS.gene42604:intron 40.0%
GATCCTGTCATTGTTTCAAC+AGG + chr4.2:41404495-41404514 MS.gene42604:CDS 40.0%
GCAGACAAACTGCAATTGAT+GGG + chr4.2:41404204-41404223 MS.gene42604:CDS 40.0%
GCATAGTTCATGTGCTGAAA+AGG + chr4.2:41405622-41405641 MS.gene42604:CDS 40.0%
GCTAAGGAACTTCTCAGATT+TGG + chr4.2:41402004-41402023 MS.gene42604:CDS 40.0%
GGAAGGTGAAAAAGTAAACG+TGG + chr4.2:41401793-41401812 MS.gene42604:CDS 40.0%
GTGCATTTATCAGGGAAACA+AGG + chr4.2:41405815-41405834 MS.gene42604:CDS 40.0%
TAACAATGGTCCAAAGCAGT+TGG - chr4.2:41403229-41403248 None:intergenic 40.0%
TACGAAGCCTGATAGAACAA+TGG + chr4.2:41405250-41405269 MS.gene42604:CDS 40.0%
TCTTCATACAACTTGGCATC+TGG - chr4.2:41404120-41404139 None:intergenic 40.0%
TGCATTCTCTTTGTTCCTTG+GGG - chr4.2:41406021-41406040 None:intergenic 40.0%
TGCCATGCTTACAGTTACAT+AGG + chr4.2:41403581-41403600 MS.gene42604:intron 40.0%
TGTCATTGTTTCAACAGGAC+AGG + chr4.2:41404500-41404519 MS.gene42604:CDS 40.0%
TGTCCTGTTGAAACAATGAC+AGG - chr4.2:41404501-41404520 None:intergenic 40.0%
! CGTACTCGATTTGTCTTCTT+CGG + chr4.2:41402604-41402623 MS.gene42604:intron 40.0%
! CTTCTCAGATTTGGTTGTGA+AGG + chr4.2:41402013-41402032 MS.gene42604:CDS 40.0%
! GACCTTTTCAAAGTTCATCG+AGG - chr4.2:41403412-41403431 None:intergenic 40.0%
! GTACTCGATTTGTCTTCTTC+GGG + chr4.2:41402605-41402624 MS.gene42604:intron 40.0%
! GTGTAACTCGCTATCGTTTT+AGG + chr4.2:41404044-41404063 MS.gene42604:intron 40.0%
! GTTTGGTGATTCTGTCACAA+TGG + chr4.2:41403191-41403210 MS.gene42604:intron 40.0%
! TACTCGATTTGTCTTCTTCG+GGG + chr4.2:41402606-41402625 MS.gene42604:intron 40.0%
! TCTTCAGGATTTTACGGACT+AGG + chr4.2:41404396-41404415 MS.gene42604:CDS 40.0%
! TGAGACTCTGCTGTGTTTTT+GGG - chr4.2:41405200-41405219 None:intergenic 40.0%
! TGCCTCGATGAACTTTGAAA+AGG + chr4.2:41403407-41403426 MS.gene42604:intron 40.0%
!! ACAGCAAAAGGTGTTTCTTC+AGG + chr4.2:41404381-41404400 MS.gene42604:CDS 40.0%
!! AGTTCTGGTTTCTGTTGTGT+GGG + chr4.2:41403256-41403275 MS.gene42604:intron 40.0%
!! CCGGTTTTGGTAGAGTTTAT+TGG + chr4.2:41405987-41406006 MS.gene42604:CDS 40.0%
!! CTTCAGGATTTTACGGACTA+GGG + chr4.2:41404397-41404416 MS.gene42604:CDS 40.0%
!! GTTGGCCATTTTGGCAATTT+TGG + chr4.2:41405917-41405936 MS.gene42604:CDS 40.0%
!! TAGTTCTGGTTTCTGTTGTG+TGG + chr4.2:41403255-41403274 MS.gene42604:intron 40.0%
!! TTTTGGCTAGTCATCCTGAA+GGG + chr4.2:41405934-41405953 MS.gene42604:CDS 40.0%
!!! ATTTTGGCTAGTCATCCTGA+AGG + chr4.2:41405933-41405952 MS.gene42604:CDS 40.0%
!!! GCTATCGTTTTAGGTTGAAC+TGG + chr4.2:41404053-41404072 MS.gene42604:intron 40.0%
!!! TTCAGGATTTTACGGACTAG+GGG + chr4.2:41404398-41404417 MS.gene42604:CDS 40.0%
AATCTTACTTCGCTCAGCTG+GGG - chr4.2:41405349-41405368 None:intergenic 45.0%
ACACAATTTGCCGGAGATCT+CGG - chr4.2:41402583-41402602 None:intergenic 45.0%
ACTCAGTTCAGAAGAGCCAA+AGG + chr4.2:41404081-41404100 MS.gene42604:CDS 45.0%
ACTGTCGATCTCCAGAACAA+AGG - chr4.2:41406061-41406080 None:intergenic 45.0%
ATCACTCGCTTTGCATGAGA+TGG + chr4.2:41404248-41404267 MS.gene42604:CDS 45.0%
CAATCTTACTTCGCTCAGCT+GGG - chr4.2:41405350-41405369 None:intergenic 45.0%
CACGGACAGAGGAAAAAGAA+AGG + chr4.2:41406142-41406161 MS.gene42604:CDS 45.0%
CAGCTTCAGCAATAGCTACA+CGG - chr4.2:41405467-41405486 None:intergenic 45.0%
CAGGCTTCGTAAGACATAGT+TGG - chr4.2:41405241-41405260 None:intergenic 45.0%
CATCTCAGACTTCAGACCTA+TGG + chr4.2:41401844-41401863 MS.gene42604:CDS 45.0%
CATGTTTACAGGTCCTTGAG+AGG + chr4.2:41403775-41403794 MS.gene42604:intron 45.0%
CCGGAGATCTCGGAAATTAT+AGG - chr4.2:41402573-41402592 None:intergenic 45.0%
CTCAGTTCAGAAGAGCCAAA+GGG + chr4.2:41404082-41404101 MS.gene42604:CDS 45.0%
GAAACAAGGGAAAAGCAGTG+AGG + chr4.2:41405829-41405848 MS.gene42604:CDS 45.0%
GAACAATGGTGTGAAGCCAA+TGG + chr4.2:41405264-41405283 MS.gene42604:CDS 45.0%
GATGGCTCCATTGTTGGAAT+TGG + chr4.2:41406109-41406128 MS.gene42604:CDS 45.0%
GCTGCATTCTCTTTGTTCCT+TGG - chr4.2:41406023-41406042 None:intergenic 45.0%
GTCGATATTCAGGGTTCATG+AGG - chr4.2:41402753-41402772 None:intergenic 45.0%
TAACAGCGTGCTCTTGAGTT+CGG - chr4.2:41405533-41405552 None:intergenic 45.0%
TCAATCTTACTTCGCTCAGC+TGG - chr4.2:41405351-41405370 None:intergenic 45.0%
TGGTTCATCAACTCTCCCTT+TGG - chr4.2:41404100-41404119 None:intergenic 45.0%
TTATTGGGAATGGATCCCCA+AGG + chr4.2:41406003-41406022 MS.gene42604:CDS 45.0%
TTCAGCACATGAACTATGCC+TGG - chr4.2:41405621-41405640 None:intergenic 45.0%
TTTGAGCTGTGAGCAACCAA+AGG - chr4.2:41403631-41403650 None:intergenic 45.0%
! CAGATTTCACATCTGGAGTG+TGG - chr4.2:41402885-41402904 None:intergenic 45.0%
! CATTGCGTTTTGCAAGAAGC+CGG - chr4.2:41405437-41405456 None:intergenic 45.0%
! GCTAATCGACTTAGAACAGC+TGG - chr4.2:41404186-41404205 None:intergenic 45.0%
! GTGAGACTCTGCTGTGTTTT+TGG - chr4.2:41405201-41405220 None:intergenic 45.0%
! TTTACTTGGCTCAGAAGTGC+TGG - chr4.2:41405310-41405329 None:intergenic 45.0%
!! CAGGCTGATGCTGATTTACT+TGG - chr4.2:41405324-41405343 None:intergenic 45.0%
!! GTTCTGGTTTCTGTTGTGTG+GGG + chr4.2:41403257-41403276 MS.gene42604:intron 45.0%
!! TTACTTGGCTCAGAAGTGCT+GGG - chr4.2:41405309-41405328 None:intergenic 45.0%
!! TTTTGGTGGCTCTATGCCAT+TGG - chr4.2:41405283-41405302 None:intergenic 45.0%
!!! GCATTCCCTTTTGAAGCTGT+TGG + chr4.2:41402997-41403016 MS.gene42604:intron 45.0%
AACAGCGTGCTCTTGAGTTC+GGG - chr4.2:41405532-41405551 None:intergenic 50.0%
AACTATGCCTGGAACTGCTC+CGG - chr4.2:41405610-41405629 None:intergenic 50.0%
ACTCGCTTTGCATGAGATGG+TGG + chr4.2:41404251-41404270 MS.gene42604:CDS 50.0%
AGAGGAGACCAACAAGGAGA+GGG - chr4.2:41405497-41405516 None:intergenic 50.0%
AGCTCGGTTGGAACAATCAC+TGG + chr4.2:41403830-41403849 MS.gene42604:CDS 50.0%
ATAGCACAGGCACAAGAGCT+AGG + chr4.2:41406083-41406102 MS.gene42604:CDS 50.0%
ATCCAAAAGCTCACATCCGG+TGG + chr4.2:41405378-41405397 MS.gene42604:CDS 50.0%
ATTGCTGACAGAACCTAGCG+GGG + chr4.2:41405878-41405897 MS.gene42604:CDS 50.0%
CAAAGCAGTTGGACCACATG+TGG - chr4.2:41403218-41403237 None:intergenic 50.0%
CACATGTGGTCCAACTGCTT+TGG + chr4.2:41403216-41403235 MS.gene42604:intron 50.0%
CGAGTACGGACACAATTTGC+CGG - chr4.2:41402592-41402611 None:intergenic 50.0%
CGATTGCTGACAGAACCTAG+CGG + chr4.2:41405876-41405895 MS.gene42604:CDS 50.0%
CGATTTGTCTTCTTCGGGGA+AGG + chr4.2:41402610-41402629 MS.gene42604:intron 50.0%
CGTGTAGCTATTGCTGAAGC+TGG + chr4.2:41405465-41405484 MS.gene42604:CDS 50.0%
CTGTCACAATGGTCCACATG+TGG + chr4.2:41403202-41403221 MS.gene42604:intron 50.0%
GAACAAAGAGAATGCAGCCG+CGG + chr4.2:41406025-41406044 MS.gene42604:CDS 50.0%
GATTGCTGACAGAACCTAGC+GGG + chr4.2:41405877-41405896 MS.gene42604:CDS 50.0%
GTTGGGTGTGAGAACAGTAC+TGG - chr4.2:41405223-41405242 None:intergenic 50.0%
TAGCACAGGCACAAGAGCTA+GGG + chr4.2:41406084-41406103 MS.gene42604:CDS 50.0%
TGTGCTGAAAAGGGGAAGCA+TGG + chr4.2:41405632-41405651 MS.gene42604:CDS 50.0%
TTCAGGAGCGATATCACCAC+TGG + chr4.2:41405728-41405747 MS.gene42604:CDS 50.0%
! AAAGGGGAAGCATGGAAGCT+CGG + chr4.2:41405640-41405659 MS.gene42604:CDS 50.0%
! AGATGGTGGCAGTAAGTGGT+GGG + chr4.2:41404265-41404284 MS.gene42604:CDS 50.0%
! CATGAGATGGTGGCAGTAAG+TGG + chr4.2:41404261-41404280 MS.gene42604:CDS 50.0%
! GGAATTGGCTCAAAACGGCA+CGG + chr4.2:41406124-41406143 MS.gene42604:CDS 50.0%
! TGTTGTGTGGGGTTTTGCAC+AGG + chr4.2:41403268-41403287 MS.gene42604:intron 50.0%
!!! GGATGAAGCGTTGGCCATTT+TGG + chr4.2:41405908-41405927 MS.gene42604:CDS 50.0%
!!! TCAGAAGTGCTGGGTCGTTT+TGG - chr4.2:41405300-41405319 None:intergenic 50.0%
AAGGGAAAAGCAGTGAGGGC+TGG + chr4.2:41405834-41405853 MS.gene42604:CDS 55.0%
AAGTGGTTGCAAGACGGCCA+CGG + chr4.2:41405168-41405187 MS.gene42604:CDS 55.0%
ACTGGTGACACTGCTGAGTG+AGG + chr4.2:41405746-41405765 MS.gene42604:CDS 55.0%
AGCACAGGCACAAGAGCTAG+GGG + chr4.2:41406085-41406104 MS.gene42604:CDS 55.0%
CCAATGGCAGCTTTCCCTTC+AGG - chr4.2:41405951-41405970 None:intergenic 55.0%
CCTGAAGGGAAAGCTGCCAT+TGG + chr4.2:41405948-41405967 MS.gene42604:CDS 55.0%
CTATGAGGTGACAGCTCGGT+TGG + chr4.2:41403818-41403837 MS.gene42604:CDS 55.0%
CTGGTGACACTGCTGAGTGA+GGG + chr4.2:41405747-41405766 MS.gene42604:CDS 55.0%
CTTCATGCTGCTCCTGCTCA+CGG - chr4.2:41406199-41406218 None:intergenic 55.0%
GAAGACCAGAGATCAGCTGC+CGG + chr4.2:41405405-41405424 MS.gene42604:CDS 55.0%
GAGAGGAGACCAACAAGGAG+AGG - chr4.2:41405498-41405517 None:intergenic 55.0%
GGTGCAATCCCTCTCCTTGT+TGG + chr4.2:41405486-41405505 MS.gene42604:CDS 55.0%
GTCAGCAATCGCATCAGCGT+CGG - chr4.2:41405867-41405886 None:intergenic 55.0%
GTTTCTTCCGGAGCAGTTCC+AGG + chr4.2:41405600-41405619 MS.gene42604:CDS 55.0%
TACAGGTCCTTGAGAGGGAC+CGG + chr4.2:41403781-41403800 MS.gene42604:intron 55.0%
TATGAGCAGGATCCGTGAGC+AGG + chr4.2:41406184-41406203 MS.gene42604:CDS 55.0%
TCACTCAGCAGTGTCACCAG+TGG - chr4.2:41405747-41405766 None:intergenic 55.0%
TCATGATCCGGTCCCTCTCA+AGG - chr4.2:41403791-41403810 None:intergenic 55.0%
TGCAAGAAGCCGGATCTCTC+CGG - chr4.2:41405427-41405446 None:intergenic 55.0%
TGCTCTTGAGTTCGGGAGTC+TGG - chr4.2:41405525-41405544 None:intergenic 55.0%
TTGAGTTCGGGAGTCTGGCA+CGG - chr4.2:41405520-41405539 None:intergenic 55.0%
TTGCTGACAGAACCTAGCGG+GGG + chr4.2:41405879-41405898 MS.gene42604:CDS 55.0%
! AAGGGGAAGCATGGAAGCTC+GGG + chr4.2:41405641-41405660 MS.gene42604:CDS 55.0%
! AGGGGTGATGGCTCCATTGT+TGG + chr4.2:41406103-41406122 MS.gene42604:CDS 55.0%
! AGTAAGTGGTGGGGATCCAG+GGG + chr4.2:41404275-41404294 MS.gene42604:CDS 55.0%
! CAGTAAGTGGTGGGGATCCA+GGG + chr4.2:41404274-41404293 MS.gene42604:CDS 55.0%
! GACCACCGGATGTGAGCTTT+TGG - chr4.2:41405383-41405402 None:intergenic 55.0%
! GAGATGGTGGCAGTAAGTGG+TGG + chr4.2:41404264-41404283 MS.gene42604:CDS 55.0%
! GATGGTGGCAGTAAGTGGTG+GGG + chr4.2:41404266-41404285 MS.gene42604:CDS 55.0%
! GCAGCTGATCTCTGGTCTTC+AGG - chr4.2:41405405-41405424 None:intergenic 55.0%
! GGGTTCATGAGGTGTCTGCT+AGG - chr4.2:41402742-41402761 None:intergenic 55.0%
! TCTCTGGTCTTCAGGACCAC+CGG - chr4.2:41405397-41405416 None:intergenic 55.0%
!! CTGAGTGAGGGTACCCAAAG+GGG + chr4.2:41405759-41405778 MS.gene42604:CDS 55.0%
!! GCTGAGTGAGGGTACCCAAA+GGG + chr4.2:41405758-41405777 MS.gene42604:CDS 55.0%
!! GGGAATGGTGGATGAAGCGT+TGG + chr4.2:41405899-41405918 MS.gene42604:CDS 55.0%
!! TGCTGAGTGAGGGTACCCAA+AGG + chr4.2:41405757-41405776 MS.gene42604:CDS 55.0%
!!! GAAGTGCTGGGTCGTTTTGG+TGG - chr4.2:41405297-41405316 None:intergenic 55.0%
AGAACCTAGCGGGGGAATGG+TGG + chr4.2:41405887-41405906 MS.gene42604:CDS 60.0%
AGTGGTTGCAAGACGGCCAC+GGG + chr4.2:41405169-41405188 MS.gene42604:CDS 60.0%
CACTGCCTCTGCAGCACCAA+TGG - chr4.2:41405967-41405986 None:intergenic 60.0%
GACAGAACCTAGCGGGGGAA+TGG + chr4.2:41405884-41405903 MS.gene42604:CDS 60.0%
GATCAGCTGCCGGAGAGATC+CGG + chr4.2:41405415-41405434 MS.gene42604:CDS 60.0%
GCACGGAGAGGAGACCAACA+AGG - chr4.2:41405503-41405522 None:intergenic 60.0%
GCTCAAAACGGCACGGACAG+AGG + chr4.2:41406131-41406150 MS.gene42604:CDS 60.0%
GGCACAAGAGCTAGGGGTGA+TGG + chr4.2:41406091-41406110 MS.gene42604:CDS 60.0%
TCATCCACCATTCCCCCGCT+AGG - chr4.2:41405894-41405913 None:intergenic 60.0%
TCTCTCCGGCAGCTGATCTC+TGG - chr4.2:41405413-41405432 None:intergenic 60.0%
! GCAGTAAGTGGTGGGGATCC+AGG + chr4.2:41404273-41404292 MS.gene42604:CDS 60.0%
!! AGCTGCCATTGGTGCTGCAG+AGG + chr4.2:41405959-41405978 MS.gene42604:CDS 60.0%
!!! GTGTTTTTGGGCACGTCCCG+TGG - chr4.2:41405188-41405207 None:intergenic 60.0%
!!! TGCAGAGGCAGTGCCGGTTT+TGG + chr4.2:41405974-41405993 MS.gene42604:CDS 60.0%
ACTTCGCTCAGCTGGGGTGC+AGG - chr4.2:41405343-41405362 None:intergenic 65.0%
ATCTTCTCGATGCGCGCCCC+TGG - chr4.2:41404294-41404313 None:intergenic 65.0%
TTCGGGAGTCTGGCACGGAG+AGG - chr4.2:41405515-41405534 None:intergenic 65.0%
!! TGGTGCTGCAGAGGCAGTGC+CGG + chr4.2:41405968-41405987 MS.gene42604:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 41401791 41406271 41401791 ID=MS.gene42604
chr4.2 mRNA 41401791 41406271 41401791 ID=MS.gene42604.t1;Parent=MS.gene42604
chr4.2 exon 41401791 41402051 41401791 ID=MS.gene42604.t1.exon1;Parent=MS.gene42604.t1
chr4.2 CDS 41401791 41402051 41401791 ID=cds.MS.gene42604.t1;Parent=MS.gene42604.t1
chr4.2 exon 41403786 41403902 41403786 ID=MS.gene42604.t1.exon2;Parent=MS.gene42604.t1
chr4.2 CDS 41403786 41403902 41403786 ID=cds.MS.gene42604.t1;Parent=MS.gene42604.t1
chr4.2 exon 41404066 41404521 41404066 ID=MS.gene42604.t1.exon3;Parent=MS.gene42604.t1
chr4.2 CDS 41404066 41404521 41404066 ID=cds.MS.gene42604.t1;Parent=MS.gene42604.t1
chr4.2 exon 41405144 41406271 41405144 ID=MS.gene42604.t1.exon4;Parent=MS.gene42604.t1
chr4.2 CDS 41405144 41406271 41405144 ID=cds.MS.gene42604.t1;Parent=MS.gene42604.t1
Gene Sequence

>MS.gene42604

ATGGAAGGTGAAAAAGTAAACGTGGTGATTGATTTGGTGAACGAGATAGCGAACATCTCAGACTTCAGACCTATGGTGAAGAAGCAATATTGCAACTTAGCACGAAGGTTGAAGCTGTTGATTCCTTTGTTTGAAGAGATAAGGGATATGAAAGATTCGATTCCGAATGATACTTCAAAAGCGTTGGTTTTGTTTAAAGATGCTCTTGATTCAGCTAAGGAACTTCTCAGATTTGGTTGTGAAGGAAGCAAGATTTATATGGTTTGTTATTTTTCATCATTTTTACTTTTTGATGTAGTTAAAAGTTATTTTTAGTATTAACATATCTTTGAACTTTGCTATATAACTTTTTTTTTTTTAAATTAAAAAAAAATTATTCTGCTTGGTTATGTGGGATTGATTTTTTTATGATTGGCTATGTTTACTTCAGATTTGTAGTAATATTTTATTTAGTTTGTGTTTTTTTTTTAATTCAATTAATTGTAAATTTTTATTTTATATTTTTTGAGATTGATTTCTGTTTTGAATTATGATTTTTGATTGAATTTGTATTGGTGATTATGATCTGATTTCTTTCTACTAGTTATGTGTTTTTTGTAATTAGATTTGTTTATGGTTGGTAAGTGAAACCTTCATAATTATGGATTTTTGTGCTAAATTGGGCATTTTGAGAATATATTGCATGGTGTTTAGGAAGTGTATTGAAAAGGAATTTCTGATTTTTGATCTTGTATGGTATTCAATTCAATGTTTTGGATGTAATCTGTTAAAGGTACAAGCCTATAATTTCCGAGATCTCCGGCAAATTGTGTCCGTACTCGATTTGTCTTCTTCGGGGAAGGAGTCTTTACTATTAATTAAAGCGGCAATGATCATTTTACAATTATTATCGAGGGGGATTTGAATTCTATTCCGTGTGGTAGAGGTTATCAGATCGAACTTTTACAACCTAGCAGACACCTCATGAACCCTGAATATCGACAGAAGAATTTTCCCCCTTTCATTTCTATTGTTAAAAAGGATTTTGGTGAGGAGTTGAGTAAATATTTTTCTATGCTTGTTCTTTCTTTACTTGAGAGTTGAGACGCTTTCCACACTCCAGATGTGAAATCTGAAGATATAGTCTTTGCAGACACGAACATTTGAGCGACAAAAGGAGATTTCTGAATGCTGTAAATTTCTCTCAGCTTAAAGACCATATTGTGGGCATTCCCTTTTGAAGCTGTTGGTACTATTTGTTGATCTAGTATACCAAACATTTTACCCTTGATGTTTAATTATCATGCTATATATTATGGATCATGATCGGCACTCTTCATTTGACTAAACCCTCTTTTATCAAAGGTACCCTAGGATTCCAAAACCATGTTTTTTTTTTTAACTTTGGTAAGATTATAGCTGTTTGGTGATTCTGTCACAATGGTCCACATGTGGTCCAACTGCTTTGGACCATTGTTATTAAGATAGTTCTGGTTTCTGTTGTGTGGGGTTTTGCACAGGAAGTTAAAAAGGTAAAATGTAGAGGTAAGCGAAGAGTATTTTCCTTTAATTGTGCCCAGTGTTTCAAGCATTGCTATATTTTTACAGTACGTTGTCCATGGTGCCAAAACTTATTATGCCTCGATGAACTTTGAAAAGGTCAAACTAATCCAGGTTTTTGCAAAATTTAGTAATAATTAATAATGAATAATTCAATACAATTTACAATATTTGTACTATTTGGAATCCAATTAATATTGTGTATCTAATTATTGTTAGTATTGTATTTCTTTTTATCTATATGGGAACCTTGCCATGCTTACAGTTACATAGGAGGCATTTCATATGAATGTTCTGACCTTTGGTTGCTCACAGCTCAAATTCCCTTGTGAATCCCATTCTTAAAATTGAGTTAAACCAATATACTTAGAGGGAGCATTATGAAAACTTAAATTCTAGTAAAATGACATGTGCTGCCTTAGATGTTGATTCAGTTGTTTTGATTCATGTTTACAGGTCCTTGAGAGGGACCGGATCATGAATAATTTCTATGAGGTGACAGCTCGGTTGGAACAATCACTGGATGCAATTTCCTATGATAAACTTGACATATCCGATGAAGTTAAAGAGCAGGTATAAATACTTCTGTCATATATATATTTATTGCGGTGGAACACTGTGTGATCTTGCTAAATAACTCTTCACAGTAGAATAGACACTGCCACACTACAATTTTTTTATTTTTTATTTTATTTATTATTGTTAAATAATCTTGTGTAACTCGCTATCGTTTTAGGTTGAACTGGTTCTTACTCAGTTCAGAAGAGCCAAAGGGAGAGTTGATGAACCAGATGCCAAGTTGTATGAAGATATGTCATTTCTTTACAACAATAGCAGTGATGCAGCTATAGATCCAGCTGTTCTAAGTCGATTAGCAGACAAACTGCAATTGATGGGAATAGCTGATCTTACACAAGAATCACTCGCTTTGCATGAGATGGTGGCAGTAAGTGGTGGGGATCCAGGGGCGCGCATCGAGAAGATGTCGATGTTATTGAAGAAGATAAAGGATCATGTGCAAATAGAAAACCTAGTCAAGGATGATACTAAAACAGCAAAAGGTGTTTCTTCAGGATTTTACGGACTAGGGGAAAATGATACGAATCATCAAGCCCCTCCTATTCCTAGTGATTTTAAATGTCCGATTTCCTTGGAATTGATGATGGATCCTGTCATTGTTTCAACAGGACAGGTATGTACATTCTATGATACTCTCTTATAGACATTAAGGTTTGGTCATTTCATTATCATTCTTGACTTCAATTTGGAAAGTTCTTATCTTGCATATATGTCTGCTTGAGCGTAAGATATCTGCAAACGGAACCATGCTCTTTACACAATTTTCTCAATAGATCTAAAGGTTTATTTGGTTTAAGAAAACTTAAAATAATCTGTTTCCATTTAATAATTACAGAAACTTACCTTGTTTTCACCTTACTATTATTAGTTATCAATGATTTGTCCCAAAAATGGTATAGCCTTTTCAATATTTCCTGGATGATCATTCTCTCATTTTACTAACAAAAAGGATCATGTAGAGAGAAAGAAAGAAGCAAACTTTATTTTAAAATTTCTTCTCTATGGCTATTGAGATTTAATGTAGTCGGACATATTGCAAAATGTACAATTGTTTTATTATATATTGATGAATTTCTTTGGAACACAAGTTTTGGTTGAATTTTAAATAATTGTATAAAAAATTGAAGGCTACATGATGAATCCAGTGTGCATTATTGACATTTTACTTCTGTTTCAGAGTCAGTTTGCTGATAACTGTCTATTAATACTCAGACACATCTTGTTCTCATCTGCAGACTTATGAGCGTTCTTGTATTGAGAAGTGGTTGCAAGACGGCCACGGGACGTGCCCAAAAACACAGCAGAGTCTCACCAGTACTGTTCTCACACCCAACTATGTCTTACGAAGCCTGATAGAACAATGGTGTGAAGCCAATGGCATAGAGCCACCAAAACGACCCAGCACTTCTGAGCCAAGTAAATCAGCATCAGCCTGCACCCCAGCTGAGCGAAGTAAGATTGAAAGTCTTATCCAAAAGCTCACATCCGGTGGTCCTGAAGACCAGAGATCAGCTGCCGGAGAGATCCGGCTTCTTGCAAAACGCAATGCAGATAACCGTGTAGCTATTGCTGAAGCTGGTGCAATCCCTCTCCTTGTTGGTCTCCTCTCCGTGCCAGACTCCCGAACTCAAGAGCACGCTGTTACAGCGCTTCTGAATCTCTCCATATATGAGAGTAACAAAGGAAGCATTGTTTCTTCCGGAGCAGTTCCAGGCATAGTTCATGTGCTGAAAAGGGGAAGCATGGAAGCTCGGGAAAATGCAGCAGCAACACTTTTCAGTCTTTCAGTTATCGATGAAAATAAGGTTACAATTGGTTCTTCAGGAGCGATATCACCACTGGTGACACTGCTGAGTGAGGGTACCCAAAGGGGTAAGAAAGATGCTGCAACTGCACTCTTCAATTTGTGCATTTATCAGGGAAACAAGGGAAAAGCAGTGAGGGCTGGTGTTATTCCGACGCTGATGCGATTGCTGACAGAACCTAGCGGGGGAATGGTGGATGAAGCGTTGGCCATTTTGGCAATTTTGGCTAGTCATCCTGAAGGGAAAGCTGCCATTGGTGCTGCAGAGGCAGTGCCGGTTTTGGTAGAGTTTATTGGGAATGGATCCCCAAGGAACAAAGAGAATGCAGCCGCGGTTTTAGTTCACCTTTGTTCTGGAGATCGACAGTATATAGCACAGGCACAAGAGCTAGGGGTGATGGCTCCATTGTTGGAATTGGCTCAAAACGGCACGGACAGAGGAAAAAGAAAGGCAACACAATTGATAGAGCGTATGAGCAGGATCCGTGAGCAGGAGCAGCATGAAGTTCTGACACAAACTGAACTTCAAGCTCAGAACGATGATATCCATCCACCTTTG
Protein sequence

>MS.gene42604.t1

MEGEKVNVVIDLVNEIANISDFRPMVKKQYCNLARRLKLLIPLFEEIRDMKDSIPNDTSKALVLFKDALDSAKELLRFGCEGSKIYMVLERDRIMNNFYEVTARLEQSLDAISYDKLDISDEVKEQVELVLTQFRRAKGRVDEPDAKLYEDMSFLYNNSSDAAIDPAVLSRLADKLQLMGIADLTQESLALHEMVAVSGGDPGARIEKMSMLLKKIKDHVQIENLVKDDTKTAKGVSSGFYGLGENDTNHQAPPIPSDFKCPISLELMMDPVIVSTGQTYERSCIEKWLQDGHGTCPKTQQSLTSTVLTPNYVLRSLIEQWCEANGIEPPKRPSTSEPSKSASACTPAERSKIESLIQKLTSGGPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQEHAVTALLNLSIYESNKGSIVSSGAVPGIVHVLKRGSMEARENAAATLFSLSVIDENKVTIGSSGAISPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTEPSGGMVDEALAILAILASHPEGKAAIGAAEAVPVLVEFIGNGSPRNKENAAAVLVHLCSGDRQYIAQAQELGVMAPLLELAQNGTDRGKRKATQLIERMSRIREQEQHEVLTQTELQAQNDDIHPPL