Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43113.t1 | XP_003621749.2 | 99.2 | 359 | 2 | 1 | 1 | 358 | 1 | 359 | 1.50E-204 | 721.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43113.t1 | G7KUS0 | 99.2 | 359 | 2 | 1 | 1 | 358 | 1 | 359 | 1.1e-204 | 721.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene43113 | 0.803937 | 2.75E-49 | -1.69E-46 |
| MS.gene050114 | MS.gene43113 | 0.816492 | 5.38E-52 | -1.69E-46 |
| MS.gene050317 | MS.gene43113 | 0.811825 | 5.77E-51 | -1.69E-46 |
| MS.gene050838 | MS.gene43113 | 0.812272 | 4.61E-51 | -1.69E-46 |
| MS.gene056752 | MS.gene43113 | 0.849814 | 2.54E-60 | -1.69E-46 |
| MS.gene057452 | MS.gene43113 | -0.813981 | 1.94E-51 | -1.69E-46 |
| MS.gene058638 | MS.gene43113 | 0.820951 | 5.23E-53 | -1.69E-46 |
| MS.gene058639 | MS.gene43113 | 0.817879 | 2.62E-52 | -1.69E-46 |
| MS.gene058654 | MS.gene43113 | 0.815175 | 1.06E-51 | -1.69E-46 |
| MS.gene058758 | MS.gene43113 | 0.819415 | 1.18E-52 | -1.69E-46 |
| MS.gene05880 | MS.gene43113 | 0.832444 | 9.42E-56 | -1.69E-46 |
| MS.gene059171 | MS.gene43113 | 0.807726 | 4.39E-50 | -1.69E-46 |
| MS.gene060563 | MS.gene43113 | 0.816998 | 4.14E-52 | -1.69E-46 |
| MS.gene060869 | MS.gene43113 | 0.819795 | 9.63E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43113.t1 | MTR_7g022390 | 99.164 | 359 | 2 | 1 | 1 | 358 | 1 | 359 | 0.0 | 730 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43113.t1 | AT5G13100 | 68.665 | 367 | 93 | 6 | 1 | 358 | 1 | 354 | 6.12e-168 | 473 |
Find 99 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTGTGTCGTCGGCGATT+TGG | 0.292982 | 7.2:+77242426 | None:intergenic |
| CACCGGCGTCGGCGCTTCCT+TGG | 0.318979 | 7.2:-77242456 | MS.gene43113:CDS |
| ACCTGAGATCAACATGTATT+TGG | 0.325529 | 7.2:+77241087 | None:intergenic |
| GGTGAAGTTGTTGGCGAAGA+AGG | 0.346403 | 7.2:-77241966 | MS.gene43113:CDS |
| GCCGGATCTGATGTTTGGTT+GGG | 0.350622 | 7.2:-77242008 | MS.gene43113:CDS |
| CGCTGTTGTTTCCCAAGAAA+AGG | 0.358529 | 7.2:-77239781 | MS.gene43113:CDS |
| CGCCGGATCTGATGTTTGGT+TGG | 0.367147 | 7.2:-77242009 | MS.gene43113:CDS |
| AGTTCTGCAATTTCGCTCCT+TGG | 0.368048 | 7.2:+77239986 | None:intergenic |
| GAGGGTCGTGCTGCAGCTTT+CGG | 0.374658 | 7.2:-77240989 | MS.gene43113:CDS |
| CGCTTTCACCGGCGGCGGAT+GGG | 0.384709 | 7.2:-77242350 | MS.gene43113:CDS |
| CACCGTAGATCTCGTCGTTC+CGG | 0.387066 | 7.2:-77242389 | MS.gene43113:CDS |
| CACACAGGTTGGTGCGGTGC+TGG | 0.398640 | 7.2:-77239840 | MS.gene43113:intron |
| ACGCTTTCACCGGCGGCGGA+TGG | 0.405596 | 7.2:-77242351 | MS.gene43113:CDS |
| ATGATATCATATTCATCATC+AGG | 0.435655 | 7.2:+77241061 | None:intergenic |
| CAAATCGCCGACGACACAAA+TGG | 0.439168 | 7.2:-77242425 | MS.gene43113:CDS |
| TACCTGTTCCTTTCATGAAA+AGG | 0.439961 | 7.2:+77239954 | None:intergenic |
| ATGGGAAGATGTTGTTGGTT+TGG | 0.440303 | 7.2:-77242332 | MS.gene43113:CDS |
| GGCGATGGAAATGGAGGATG+TGG | 0.441098 | 7.2:-77242140 | MS.gene43113:CDS |
| AGCGGAAGGATGAGCAATCA+AGG | 0.450406 | 7.2:+77239800 | None:intergenic |
| TATTCGCCGGATCTGATGTT+TGG | 0.451448 | 7.2:-77242013 | MS.gene43113:CDS |
| GTCGCCGCCGAACCGTTTCA+AGG | 0.453015 | 7.2:-77242481 | MS.gene43113:CDS |
| GCCAAATACATGTTGATCTC+AGG | 0.458860 | 7.2:-77241088 | MS.gene43113:CDS |
| GTCGAGGAAGGCGATGGAAA+TGG | 0.460472 | 7.2:-77242149 | MS.gene43113:CDS |
| GGCGGATGGGAAGATGTTGT+TGG | 0.465290 | 7.2:-77242337 | MS.gene43113:CDS |
| TCCTTTCATGAAAAGGAAGA+AGG | 0.472514 | 7.2:+77239961 | None:intergenic |
| CGGTGAGCCTTGAAACGGTT+CGG | 0.486631 | 7.2:+77242474 | None:intergenic |
| CTGTGAATGATGGTCAAACT+TGG | 0.496638 | 7.2:-77241111 | MS.gene43113:CDS |
| TTCATGCAAAGGGAGTTCTA+TGG | 0.498393 | 7.2:-77242279 | MS.gene43113:CDS |
| CCGGATCTGATGTTTGGTTG+GGG | 0.504652 | 7.2:-77242007 | MS.gene43113:CDS |
| GCTTTCTCACGGCGGTGAGG+TGG | 0.510480 | 7.2:-77242200 | MS.gene43113:CDS |
| TTGAAACGGTTCGGCGGCGA+CGG | 0.513115 | 7.2:+77242483 | None:intergenic |
| CCCCAACCAAACATCAGATC+CGG | 0.514075 | 7.2:+77242007 | None:intergenic |
| AAGCGATTGATGATGCGATT+CGG | 0.515226 | 7.2:-77242042 | MS.gene43113:CDS |
| AACATCTTCCCATCCGCCGC+CGG | 0.520802 | 7.2:+77242342 | None:intergenic |
| GACCGGAACGACGAGATCTA+CGG | 0.529140 | 7.2:+77242387 | None:intergenic |
| CTCTCCGCCGACGCTTTCAC+CGG | 0.531359 | 7.2:-77242361 | MS.gene43113:CDS |
| TGTTCAAGAGGTGAAGTTGT+TGG | 0.532126 | 7.2:-77241975 | MS.gene43113:CDS |
| GACGCCGGTGAGCCTTGAAA+CGG | 0.535502 | 7.2:+77242469 | None:intergenic |
| CTTCAACGTCTTCATGCAAA+GGG | 0.536724 | 7.2:-77242289 | MS.gene43113:CDS |
| TGACGGAAACTGTTTATTCA+CGG | 0.540156 | 7.2:-77242173 | MS.gene43113:CDS |
| ATGGAAGCCACCGGCTAATG+TGG | 0.541192 | 7.2:-77242260 | MS.gene43113:CDS |
| CAAGTTTGACCATCATTCAC+AGG | 0.543077 | 7.2:+77241112 | None:intergenic |
| CCTCACCGCCGTGAGAAAGC+CGG | 0.546216 | 7.2:+77242203 | None:intergenic |
| GCCGACGCTTTCACCGGCGG+CGG | 0.546801 | 7.2:-77242355 | MS.gene43113:CDS |
| GTTTCAAGGCTCACCGGCGT+CGG | 0.548802 | 7.2:-77242467 | MS.gene43113:CDS |
| CTATTTAAGGTGCAAGCGCA+TGG | 0.549806 | 7.2:-77240061 | MS.gene43113:intron |
| TCTTGGGAAACAACAGCGGA+AGG | 0.552492 | 7.2:+77239786 | None:intergenic |
| GGGTATTCATGTTGTTCAAG+AGG | 0.554732 | 7.2:-77241987 | MS.gene43113:CDS |
| GGAGATGAATCCACATTAGC+CGG | 0.555277 | 7.2:+77242250 | None:intergenic |
| AAACGGTTCGGCGGCGACGG+TGG | 0.555640 | 7.2:+77242486 | None:intergenic |
| CCTTTCATGAAAAGGAAGAA+GGG | 0.557227 | 7.2:+77239962 | None:intergenic |
| CGCTCCTTGGACGATGTGGA+AGG | 0.557946 | 7.2:+77239999 | None:intergenic |
| ATGGTGTCCATTTGTGTCGT+CGG | 0.558619 | 7.2:+77242418 | None:intergenic |
| GAGATCTACGGTGGTTCCGA+TGG | 0.559262 | 7.2:+77242399 | None:intergenic |
| TTTATTCACGGCGTCGAGGA+AGG | 0.561951 | 7.2:-77242161 | MS.gene43113:CDS |
| GCGTCGGCGGAGAGATTGAC+CGG | 0.562030 | 7.2:+77242370 | None:intergenic |
| TCTTCAACGTCTTCATGCAA+AGG | 0.564099 | 7.2:-77242290 | MS.gene43113:CDS |
| TTCAATACCTTTGCATGCCG+AGG | 0.570188 | 7.2:+77241900 | None:intergenic |
| TGGATGCGAAGGAGCTGAGA+CGG | 0.575334 | 7.2:-77242120 | MS.gene43113:CDS |
| ATCCAAGGAAGCGCCGACGC+CGG | 0.576960 | 7.2:+77242454 | None:intergenic |
| ATTTCGCTCCTTGGACGATG+TGG | 0.577563 | 7.2:+77239995 | None:intergenic |
| TTCCCAAGAAAAGGTTGCTG+TGG | 0.582631 | 7.2:-77239772 | MS.gene43113:CDS |
| TCGTTCACCTCGGCATGCAA+AGG | 0.584139 | 7.2:-77241907 | MS.gene43113:intron |
| TGTTGGCGAAGAAGGAGGAT+CGG | 0.589401 | 7.2:-77241958 | MS.gene43113:CDS |
| CACATTGCAATATACTGAGG+AGG | 0.589931 | 7.2:-77241038 | MS.gene43113:CDS |
| GGCGATTTGGAATCGATCCA+AGG | 0.591777 | 7.2:+77242439 | None:intergenic |
| TCCGCCGCCGGTGAAAGCGT+CGG | 0.601711 | 7.2:+77242354 | None:intergenic |
| TTCTGATTGAAGAGAAATGG+CGG | 0.601742 | 7.2:-77241164 | MS.gene43113:intron |
| CACGGCGTCGAGGAAGGCGA+TGG | 0.606677 | 7.2:-77242155 | MS.gene43113:CDS |
| CCGGCTTTCTCACGGCGGTG+AGG | 0.607110 | 7.2:-77242203 | MS.gene43113:CDS |
| ACTGTTTATTCACGGCGTCG+AGG | 0.610272 | 7.2:-77242165 | MS.gene43113:CDS |
| GGCGGTGAGGTGGAATCTGA+CGG | 0.610608 | 7.2:-77242190 | MS.gene43113:CDS |
| GAAGTTGTTGGCGAAGAAGG+AGG | 0.610676 | 7.2:-77241963 | MS.gene43113:CDS |
| ACATTGCAATATACTGAGGA+GGG | 0.610775 | 7.2:-77241037 | MS.gene43113:CDS |
| TTTCGACACACAGGTTGGTG+CGG | 0.610926 | 7.2:-77239846 | MS.gene43113:intron |
| GGGAGTTCTATGGAAGCCAC+CGG | 0.611285 | 7.2:-77242269 | MS.gene43113:CDS |
| AGATGTATTCCTGTGAATGA+TGG | 0.613329 | 7.2:-77241121 | MS.gene43113:CDS |
| CGAACCGTTTCAAGGCTCAC+CGG | 0.616314 | 7.2:-77242473 | MS.gene43113:CDS |
| TCCGCCGACGCTTTCACCGG+CGG | 0.617092 | 7.2:-77242358 | MS.gene43113:CDS |
| GCCGCCGGTGAAAGCGTCGG+CGG | 0.619728 | 7.2:+77242357 | None:intergenic |
| ACAACAGATCTCAGATCTGA+CGG | 0.622765 | 7.2:+77242229 | None:intergenic |
| GATTCGGCATATGTATTCGC+CGG | 0.624521 | 7.2:-77242026 | MS.gene43113:CDS |
| GAGGAAGGCGATGGAAATGG+AGG | 0.628424 | 7.2:-77242146 | MS.gene43113:CDS |
| GTTCAAGCGTGAGATATATG+TGG | 0.628710 | 7.2:-77240933 | MS.gene43113:intron |
| GCGGAAGGATGAGCAATCAA+GGG | 0.633766 | 7.2:+77239801 | None:intergenic |
| GAGCAATCAAGGGCTCATAG+TGG | 0.635024 | 7.2:+77239811 | None:intergenic |
| TGAGCCTTGAAACGGTTCGG+CGG | 0.636388 | 7.2:+77242477 | None:intergenic |
| ATCTGTAGATGAGAATAGAG+AGG | 0.637450 | 7.2:-77241008 | MS.gene43113:CDS |
| GAAGGAGCTGAGACGGAGAA+CGG | 0.641754 | 7.2:-77242113 | MS.gene43113:CDS |
| ACGACACAAATGGACACCAT+CGG | 0.648921 | 7.2:-77242415 | MS.gene43113:CDS |
| AATGGAGGATGTGGATGCGA+AGG | 0.650361 | 7.2:-77242131 | MS.gene43113:CDS |
| AGCGCATGGTTCAGATGCAA+TGG | 0.652317 | 7.2:-77240047 | MS.gene43113:CDS |
| TCTGTAGATGAGAATAGAGA+GGG | 0.658077 | 7.2:-77241007 | MS.gene43113:CDS |
| TGTGAATGATGGTCAAACTT+GGG | 0.672723 | 7.2:-77241110 | MS.gene43113:CDS |
| CATCACATTGCAATATACTG+AGG | 0.673453 | 7.2:-77241041 | MS.gene43113:CDS |
| TGATTGAAGAGAAATGGCGG+CGG | 0.679947 | 7.2:-77241161 | MS.gene43113:intron |
| GATGAATCCACATTAGCCGG+TGG | 0.691789 | 7.2:+77242253 | None:intergenic |
| ATCGACGAACTCGTTCACCT+CGG | 0.715329 | 7.2:-77241917 | MS.gene43113:CDS |
| CGGAACGACGAGATCTACGG+TGG | 0.742412 | 7.2:+77242390 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTATTTGGAAAATTGAT+GGG | - | chr7.2:77241657-77241676 | MS.gene43113:intron | 15.0% |
| !!! | ACCATTTTAAATTTTAAAAG+AGG | + | chr7.2:77242388-77242407 | None:intergenic | 15.0% |
| !!! | TCCTCTTTTAAAATTTAAAA+TGG | - | chr7.2:77242384-77242403 | MS.gene43113:CDS | 15.0% |
| !!! | TTTAGAATTGTTGATTTTTA+AGG | - | chr7.2:77240605-77240624 | MS.gene43113:intron | 15.0% |
| !! | AAATGTGTCAAAAACTAAAT+TGG | - | chr7.2:77240873-77240892 | MS.gene43113:intron | 20.0% |
| !! | AAGATTTGATTATATGATTC+CGG | - | chr7.2:77242073-77242092 | MS.gene43113:CDS | 20.0% |
| !! | AATGTGTCAAAAACTAAATT+GGG | - | chr7.2:77240874-77240893 | MS.gene43113:intron | 20.0% |
| !! | ATTATAGTCTGGAAATTATT+TGG | - | chr7.2:77241645-77241664 | MS.gene43113:intron | 20.0% |
| !! | GAAATTATTTGGAAAATTGA+TGG | - | chr7.2:77241656-77241675 | MS.gene43113:intron | 20.0% |
| !!! | GAATTTTCTTCATCTATTTA+AGG | - | chr7.2:77242201-77242220 | MS.gene43113:CDS | 20.0% |
| !!! | GTTTGTTCAATATGTTTTTA+AGG | - | chr7.2:77240581-77240600 | MS.gene43113:intron | 20.0% |
| !!! | GTTTTTGACACATTTTTATT+CGG | + | chr7.2:77240868-77240887 | None:intergenic | 20.0% |
| !!! | TGGTTTTTTTTTAATGGATT+AGG | - | chr7.2:77241520-77241539 | MS.gene43113:intron | 20.0% |
| !!! | TGTCAATGGTTTTTTTTTAA+TGG | - | chr7.2:77241514-77241533 | MS.gene43113:intron | 20.0% |
| !!! | TTTATTGTGTCTTGTTTTAT+TGG | - | chr7.2:77241048-77241067 | MS.gene43113:CDS | 20.0% |
| !!! | TTTTAAAATTTGTCTCTTTG+TGG | - | chr7.2:77242124-77242143 | MS.gene43113:CDS | 20.0% |
| ! | AAAAATTAGAGAGACCAAAT+TGG | - | chr7.2:77240903-77240922 | MS.gene43113:intron | 25.0% |
| ! | AAAATTAGAGAGACCAAATT+GGG | - | chr7.2:77240904-77240923 | MS.gene43113:intron | 25.0% |
| ! | AGATTTGATTATATGATTCC+GGG | - | chr7.2:77242074-77242093 | MS.gene43113:CDS | 25.0% |
| ! | ATAAAACAAGTAGGAAAGAA+AGG | + | chr7.2:77241588-77241607 | None:intergenic | 25.0% |
| ! | ATAGATGAAGAAAATTCAGA+TGG | + | chr7.2:77242198-77242217 | None:intergenic | 25.0% |
| ! | ATGATATCATATTCATCATC+AGG | + | chr7.2:77241217-77241236 | None:intergenic | 25.0% |
| ! | CATGTAATGGTAACTATAAA+AGG | + | chr7.2:77242043-77242062 | None:intergenic | 25.0% |
| ! | CTGTTATATATGTCAAGTAT+TGG | - | chr7.2:77241862-77241881 | MS.gene43113:intron | 25.0% |
| ! | TACTTGACATATATAACAGA+TGG | + | chr7.2:77241861-77241880 | None:intergenic | 25.0% |
| ! | TGCATTAACTTTCAATATTC+TGG | + | chr7.2:77242102-77242121 | None:intergenic | 25.0% |
| ! | TTTAAAAGAGGAAGCAAAAA+AGG | + | chr7.2:77242376-77242395 | None:intergenic | 25.0% |
| !! | CAAACTACATTTTTATACTG+TGG | - | chr7.2:77240795-77240814 | MS.gene43113:intron | 25.0% |
| !! | TTTTTCTGATTGAAGAGAAA+TGG | - | chr7.2:77241108-77241127 | MS.gene43113:CDS | 25.0% |
| !!! | AAGAGATTTTTGGAAGATTA+TGG | - | chr7.2:77240187-77240206 | MS.gene43113:intron | 25.0% |
| !!! | CAAACGTTTTGAACATATTT+TGG | - | chr7.2:77240990-77241009 | MS.gene43113:CDS | 25.0% |
| !!! | TGTTTTGTTCAATTATAGTC+TGG | - | chr7.2:77241634-77241653 | MS.gene43113:intron | 25.0% |
| !!! | TTATATATGTCAAGTATTGG+TGG | - | chr7.2:77241865-77241884 | MS.gene43113:intron | 25.0% |
| !!! | TTGATTTGTGTACATATTTG+TGG | - | chr7.2:77242150-77242169 | MS.gene43113:CDS | 25.0% |
| AGTTACCATTACATGTAACA+TGG | - | chr7.2:77242048-77242067 | MS.gene43113:CDS | 30.0% | |
| ATATATGTGGTAAGAAATGC+AGG | - | chr7.2:77241355-77241374 | MS.gene43113:intron | 30.0% | |
| CATGCAATGTAACATGTTAT+CGG | + | chr7.2:77241472-77241491 | None:intergenic | 30.0% | |
| GAATGAGAAAACAAGAAACT+TGG | + | chr7.2:77241993-77242012 | None:intergenic | 30.0% | |
| TAAGAAAACAAGACCCAATT+TGG | + | chr7.2:77240920-77240939 | None:intergenic | 30.0% | |
| TAGAATCTCAAGATTGTCAA+TGG | - | chr7.2:77241500-77241519 | MS.gene43113:intron | 30.0% | |
| TCAAGTATAGTATTCTGTGT+TGG | - | chr7.2:77241827-77241846 | MS.gene43113:intron | 30.0% | |
| TGAACAGCTATAAAACAAGT+AGG | + | chr7.2:77241597-77241616 | None:intergenic | 30.0% | |
| ! | TCATTGAGTGATTGATTTAG+TGG | + | chr7.2:77241697-77241716 | None:intergenic | 30.0% |
| !!! | AGTTTCTTGTTTTCTCATTC+TGG | - | chr7.2:77241993-77242012 | MS.gene43113:CDS | 30.0% |
| !!! | GCTTTTGAGACTTTATGATT+GGG | - | chr7.2:77241947-77241966 | MS.gene43113:CDS | 30.0% |
| !!! | TGCTTTTGAGACTTTATGAT+TGG | - | chr7.2:77241946-77241965 | MS.gene43113:CDS | 30.0% |
| AAACTTCAAGTCTCCATTGA+AGG | + | chr7.2:77241383-77241402 | None:intergenic | 35.0% | |
| AAATTGGGCCGAGAAAAAAT+TGG | + | chr7.2:77240753-77240772 | None:intergenic | 35.0% | |
| AATTGGGCCGAGAAAAAATT+GGG | + | chr7.2:77240752-77240771 | None:intergenic | 35.0% | |
| ACATTGCAATATACTGAGGA+GGG | - | chr7.2:77241238-77241257 | MS.gene43113:intron | 35.0% | |
| ACCTGAGATCAACATGTATT+TGG | + | chr7.2:77241191-77241210 | None:intergenic | 35.0% | |
| AGATGTATTCCTGTGAATGA+TGG | - | chr7.2:77241154-77241173 | MS.gene43113:CDS | 35.0% | |
| AGTAGGAAAGAAAGGATTGT+TGG | + | chr7.2:77241580-77241599 | None:intergenic | 35.0% | |
| ATCTGTAGATGAGAATAGAG+AGG | - | chr7.2:77241267-77241286 | MS.gene43113:intron | 35.0% | |
| ATGTGTTGTCGAGACTAAAT+TGG | + | chr7.2:77240769-77240788 | None:intergenic | 35.0% | |
| CAGGTCATAATCAAACACAT+TGG | + | chr7.2:77241919-77241938 | None:intergenic | 35.0% | |
| CATCACATTGCAATATACTG+AGG | - | chr7.2:77241234-77241253 | MS.gene43113:intron | 35.0% | |
| CCTTTCATGAAAAGGAAGAA+GGG | + | chr7.2:77242316-77242335 | None:intergenic | 35.0% | |
| CTTCACCATGTTACATGTAA+TGG | + | chr7.2:77242056-77242075 | None:intergenic | 35.0% | |
| TACACAAGTATATCTGCAAC+AGG | + | chr7.2:77241769-77241788 | None:intergenic | 35.0% | |
| TACCTGTTCCTTTCATGAAA+AGG | + | chr7.2:77242324-77242343 | None:intergenic | 35.0% | |
| TCCTTTCATGAAAAGGAAGA+AGG | + | chr7.2:77242317-77242336 | None:intergenic | 35.0% | |
| TCTGTAGATGAGAATAGAGA+GGG | - | chr7.2:77241268-77241287 | MS.gene43113:intron | 35.0% | |
| TGAAGACTTAAGACCCAATT+TGG | - | chr7.2:77240721-77240740 | MS.gene43113:intron | 35.0% | |
| TGACGGAAACTGTTTATTCA+CGG | - | chr7.2:77240102-77240121 | MS.gene43113:intron | 35.0% | |
| TGGAAAATTGATGGGATTAG+AGG | - | chr7.2:77241665-77241684 | MS.gene43113:intron | 35.0% | |
| TGTGAATGATGGTCAAACTT+GGG | - | chr7.2:77241165-77241184 | MS.gene43113:intron | 35.0% | |
| TGTGTTGTCGAGACTAAATT+GGG | + | chr7.2:77240768-77240787 | None:intergenic | 35.0% | |
| TTATCGGAACAATCATTCAC+AGG | + | chr7.2:77241456-77241475 | None:intergenic | 35.0% | |
| TTCATGAAAGGAACAGGTAA+TGG | - | chr7.2:77242325-77242344 | MS.gene43113:CDS | 35.0% | |
| TTCTGATTGAAGAGAAATGG+CGG | - | chr7.2:77241111-77241130 | MS.gene43113:CDS | 35.0% | |
| ! | CTTAACAATTTTCGACACAC+AGG | - | chr7.2:77242420-77242439 | MS.gene43113:CDS | 35.0% |
| ! | GTCTCAAAAGCAGTTATTTC+AGG | + | chr7.2:77241938-77241957 | None:intergenic | 35.0% |
| ! | TTCCTTTTCATGAAAGGAAC+AGG | - | chr7.2:77242319-77242338 | MS.gene43113:CDS | 35.0% |
| !! | AAAATTGGGAGGTACCAAAT+TGG | + | chr7.2:77240738-77240757 | None:intergenic | 35.0% |
| !! | AAATTGGGAGGTACCAAATT+GGG | + | chr7.2:77240737-77240756 | None:intergenic | 35.0% |
| !! | ACTTTCAATATTCTGGAACC+CGG | + | chr7.2:77242095-77242114 | None:intergenic | 35.0% |
| !!! | ATCTGAGATCTGTTGTTTTC+CGG | - | chr7.2:77240053-77240072 | MS.gene43113:CDS | 35.0% |
| !!! | TGGTCTCTCTAATTTTTTCG+CGG | + | chr7.2:77240900-77240919 | None:intergenic | 35.0% |
| ACAACAGATCTCAGATCTGA+CGG | + | chr7.2:77240049-77240068 | None:intergenic | 40.0% | |
| AGAAATGCAGGAACCTTCAA+TGG | - | chr7.2:77241367-77241386 | MS.gene43113:intron | 40.0% | |
| CAAGTTTGACCATCATTCAC+AGG | + | chr7.2:77241166-77241185 | None:intergenic | 40.0% | |
| CACATTGCAATATACTGAGG+AGG | - | chr7.2:77241237-77241256 | MS.gene43113:intron | 40.0% | |
| CTGTGAATGATGGTCAAACT+TGG | - | chr7.2:77241164-77241183 | MS.gene43113:intron | 40.0% | |
| CTTCAACGTCTTCATGCAAA+GGG | - | chr7.2:77239986-77240005 | MS.gene43113:CDS | 40.0% | |
| GCCAAATACATGTTGATCTC+AGG | - | chr7.2:77241187-77241206 | MS.gene43113:intron | 40.0% | |
| GGGTATTCATGTTGTTCAAG+AGG | - | chr7.2:77240288-77240307 | MS.gene43113:intron | 40.0% | |
| GTTCAAGCGTGAGATATATG+TGG | - | chr7.2:77241342-77241361 | MS.gene43113:intron | 40.0% | |
| TCTTCAACGTCTTCATGCAA+AGG | - | chr7.2:77239985-77240004 | MS.gene43113:CDS | 40.0% | |
| TGTTCAAGAGGTGAAGTTGT+TGG | - | chr7.2:77240300-77240319 | MS.gene43113:intron | 40.0% | |
| TTCATGCAAAGGGAGTTCTA+TGG | - | chr7.2:77239996-77240015 | MS.gene43113:CDS | 40.0% | |
| ! | ACAATTTTCGACACACAGGT+TGG | - | chr7.2:77242424-77242443 | MS.gene43113:CDS | 40.0% |
| ! | ATGGGAAGATGTTGTTGGTT+TGG | - | chr7.2:77239943-77239962 | MS.gene43113:intron | 40.0% |
| ! | CCCTTCTTCCTTTTCATGAA+AGG | - | chr7.2:77242313-77242332 | MS.gene43113:CDS | 40.0% |
| ! | CTTTTCTTGGGAAACAACAG+CGG | + | chr7.2:77242496-77242515 | None:intergenic | 40.0% |
| ! | GAGAACGGTGAAGAGATTTT+TGG | - | chr7.2:77240177-77240196 | MS.gene43113:intron | 40.0% |
| ! | TACCACAGCAACCTTTTCTT+GGG | + | chr7.2:77242508-77242527 | None:intergenic | 40.0% |
| ! | TGAGTGATTGATTTAGTGGC+TGG | + | chr7.2:77241693-77241712 | None:intergenic | 40.0% |
| !! | AAGCGATTGATGATGCGATT+CGG | - | chr7.2:77240233-77240252 | MS.gene43113:intron | 40.0% |
| !! | ATATGTCAAGTATTGGTGGC+TGG | - | chr7.2:77241869-77241888 | MS.gene43113:intron | 40.0% |
| !!! | GGATCTGTGAGTTTTGAAGA+AGG | - | chr7.2:77240208-77240227 | MS.gene43113:intron | 40.0% |
| !!! | GGTACCTCCCAATTTTTTCT+CGG | - | chr7.2:77240742-77240761 | MS.gene43113:intron | 40.0% |
| ACGACACAAATGGACACCAT+CGG | - | chr7.2:77239860-77239879 | MS.gene43113:intron | 45.0% | |
| AGTTCTGCAATTTCGCTCCT+TGG | + | chr7.2:77242292-77242311 | None:intergenic | 45.0% | |
| ATGGTGTCCATTTGTGTCGT+CGG | + | chr7.2:77239860-77239879 | None:intergenic | 45.0% | |
| GATTCGGCATATGTATTCGC+CGG | - | chr7.2:77240249-77240268 | MS.gene43113:intron | 45.0% | |
| GGAGATGAATCCACATTAGC+CGG | + | chr7.2:77240028-77240047 | None:intergenic | 45.0% | |
| TATTCGCCGGATCTGATGTT+TGG | - | chr7.2:77240262-77240281 | MS.gene43113:intron | 45.0% | |
| TGATTGAAGAGAAATGGCGG+CGG | - | chr7.2:77241114-77241133 | MS.gene43113:CDS | 45.0% | |
| TTCAATACCTTTGCATGCCG+AGG | + | chr7.2:77240378-77240397 | None:intergenic | 45.0% | |
| TTCCCAAGAAAAGGTTGCTG+TGG | - | chr7.2:77242503-77242522 | MS.gene43113:CDS | 45.0% | |
| ! | CTATTTAAGGTGCAAGCGCA+TGG | - | chr7.2:77242214-77242233 | MS.gene43113:CDS | 45.0% |
| ! | GTACCACAGCAACCTTTTCT+TGG | + | chr7.2:77242509-77242528 | None:intergenic | 45.0% |
| ! | TTTTCCTTCCACATCGTCCA+AGG | - | chr7.2:77242272-77242291 | MS.gene43113:CDS | 45.0% |
| !! | CGCTGTTGTTTCCCAAGAAA+AGG | - | chr7.2:77242494-77242513 | MS.gene43113:CDS | 45.0% |
| !! | GTTGTTTTCCGGCTTTCTCA+CGG | - | chr7.2:77240064-77240083 | MS.gene43113:intron | 45.0% |
| AATGGAGGATGTGGATGCGA+AGG | - | chr7.2:77240144-77240163 | MS.gene43113:intron | 50.0% | |
| ACTGTTTATTCACGGCGTCG+AGG | - | chr7.2:77240110-77240129 | MS.gene43113:intron | 50.0% | |
| AGCGCATGGTTCAGATGCAA+TGG | - | chr7.2:77242228-77242247 | MS.gene43113:CDS | 50.0% | |
| AGCGGAAGGATGAGCAATCA+AGG | + | chr7.2:77242478-77242497 | None:intergenic | 50.0% | |
| ATCGACGAACTCGTTCACCT+CGG | - | chr7.2:77240358-77240377 | MS.gene43113:intron | 50.0% | |
| ATTTCGCTCCTTGGACGATG+TGG | + | chr7.2:77242283-77242302 | None:intergenic | 50.0% | |
| CAAATCGCCGACGACACAAA+TGG | - | chr7.2:77239850-77239869 | MS.gene43113:intron | 50.0% | |
| CATTTGTGTCGTCGGCGATT+TGG | + | chr7.2:77239852-77239871 | None:intergenic | 50.0% | |
| CCCCAACCAAACATCAGATC+CGG | + | chr7.2:77240271-77240290 | None:intergenic | 50.0% | |
| CCGGATCTGATGTTTGGTTG+GGG | - | chr7.2:77240268-77240287 | MS.gene43113:intron | 50.0% | |
| GAAGTTGTTGGCGAAGAAGG+AGG | - | chr7.2:77240312-77240331 | MS.gene43113:intron | 50.0% | |
| GAGCAATCAAGGGCTCATAG+TGG | + | chr7.2:77242467-77242486 | None:intergenic | 50.0% | |
| GATGAATCCACATTAGCCGG+TGG | + | chr7.2:77240025-77240044 | None:intergenic | 50.0% | |
| GCCGGATCTGATGTTTGGTT+GGG | - | chr7.2:77240267-77240286 | MS.gene43113:intron | 50.0% | |
| GCGGAAGGATGAGCAATCAA+GGG | + | chr7.2:77242477-77242496 | None:intergenic | 50.0% | |
| GGTGAAGTTGTTGGCGAAGA+AGG | - | chr7.2:77240309-77240328 | MS.gene43113:intron | 50.0% | |
| TCTTGGGAAACAACAGCGGA+AGG | + | chr7.2:77242492-77242511 | None:intergenic | 50.0% | |
| TGGGCCGAGAAAAAATTGGG+AGG | + | chr7.2:77240749-77240768 | None:intergenic | 50.0% | |
| TGTTGGCGAAGAAGGAGGAT+CGG | - | chr7.2:77240317-77240336 | MS.gene43113:intron | 50.0% | |
| ! | GGCGATTTGGAATCGATCCA+AGG | + | chr7.2:77239839-77239858 | None:intergenic | 50.0% |
| ! | TTTATTCACGGCGTCGAGGA+AGG | - | chr7.2:77240114-77240133 | MS.gene43113:intron | 50.0% |
| !! | TTTCGACACACAGGTTGGTG+CGG | - | chr7.2:77242429-77242448 | MS.gene43113:CDS | 50.0% |
| CACCGTAGATCTCGTCGTTC+CGG | - | chr7.2:77239886-77239905 | MS.gene43113:intron | 55.0% | |
| CGAACCGTTTCAAGGCTCAC+CGG | - | chr7.2:77239802-77239821 | MS.gene43113:CDS | 55.0% | |
| CGCCGGATCTGATGTTTGGT+TGG | - | chr7.2:77240266-77240285 | MS.gene43113:intron | 55.0% | |
| CGGTGAGCCTTGAAACGGTT+CGG | + | chr7.2:77239804-77239823 | None:intergenic | 55.0% | |
| GAAGGAGCTGAGACGGAGAA+CGG | - | chr7.2:77240162-77240181 | MS.gene43113:intron | 55.0% | |
| GACCGGAACGACGAGATCTA+CGG | + | chr7.2:77239891-77239910 | None:intergenic | 55.0% | |
| GAGATCTACGGTGGTTCCGA+TGG | + | chr7.2:77239879-77239898 | None:intergenic | 55.0% | |
| GAGGAAGGCGATGGAAATGG+AGG | - | chr7.2:77240129-77240148 | MS.gene43113:intron | 55.0% | |
| GGCGATGGAAATGGAGGATG+TGG | - | chr7.2:77240135-77240154 | MS.gene43113:intron | 55.0% | |
| GGCGGATGGGAAGATGTTGT+TGG | - | chr7.2:77239938-77239957 | MS.gene43113:intron | 55.0% | |
| GGGAGTTCTATGGAAGCCAC+CGG | - | chr7.2:77240006-77240025 | MS.gene43113:CDS | 55.0% | |
| GTCGAGGAAGGCGATGGAAA+TGG | - | chr7.2:77240126-77240145 | MS.gene43113:intron | 55.0% | |
| TCGTTCACCTCGGCATGCAA+AGG | - | chr7.2:77240368-77240387 | MS.gene43113:intron | 55.0% | |
| TGGATGCGAAGGAGCTGAGA+CGG | - | chr7.2:77240155-77240174 | MS.gene43113:intron | 55.0% | |
| ! | ATGGAAGCCACCGGCTAATG+TGG | - | chr7.2:77240015-77240034 | MS.gene43113:CDS | 55.0% |
| ! | GTTTTCCGGCTTTCTCACGG+CGG | - | chr7.2:77240067-77240086 | MS.gene43113:intron | 55.0% |
| ! | TGAGCCTTGAAACGGTTCGG+CGG | + | chr7.2:77239801-77239820 | None:intergenic | 55.0% |
| !! | GTCAAGTATTGGTGGCTGGC+TGG | - | chr7.2:77241873-77241892 | MS.gene43113:intron | 55.0% |
| AACATCTTCCCATCCGCCGC+CGG | + | chr7.2:77239936-77239955 | None:intergenic | 60.0% | |
| CGCTCCTTGGACGATGTGGA+AGG | + | chr7.2:77242279-77242298 | None:intergenic | 60.0% | |
| CGGAACGACGAGATCTACGG+TGG | + | chr7.2:77239888-77239907 | None:intergenic | 60.0% | |
| GACGCCGGTGAGCCTTGAAA+CGG | + | chr7.2:77239809-77239828 | None:intergenic | 60.0% | |
| GAGGGTCGTGCTGCAGCTTT+CGG | - | chr7.2:77241286-77241305 | MS.gene43113:intron | 60.0% | |
| GGCGGTGAGGTGGAATCTGA+CGG | - | chr7.2:77240085-77240104 | MS.gene43113:intron | 60.0% | |
| GTTTCAAGGCTCACCGGCGT+CGG | - | chr7.2:77239808-77239827 | MS.gene43113:CDS | 60.0% | |
| ! | TTGAAACGGTTCGGCGGCGA+CGG | + | chr7.2:77239795-77239814 | None:intergenic | 60.0% |
| CCTCACCGCCGTGAGAAAGC+CGG | + | chr7.2:77240075-77240094 | None:intergenic | 65.0% | |
| CTCTCCGCCGACGCTTTCAC+CGG | - | chr7.2:77239914-77239933 | MS.gene43113:intron | 65.0% | |
| GCTTTCTCACGGCGGTGAGG+TGG | - | chr7.2:77240075-77240094 | MS.gene43113:intron | 65.0% | |
| GTCGCCGCCGAACCGTTTCA+AGG | - | chr7.2:77239794-77239813 | MS.gene43113:CDS | 65.0% | |
| ! | GCGTCGGCGGAGAGATTGAC+CGG | + | chr7.2:77239908-77239927 | None:intergenic | 65.0% |
| !! | ATCCAAGGAAGCGCCGACGC+CGG | + | chr7.2:77239824-77239843 | None:intergenic | 65.0% |
| !! | CACACAGGTTGGTGCGGTGC+TGG | - | chr7.2:77242435-77242454 | MS.gene43113:CDS | 65.0% |
| ACGCTTTCACCGGCGGCGGA+TGG | - | chr7.2:77239924-77239943 | MS.gene43113:intron | 70.0% | |
| CCGGCTTTCTCACGGCGGTG+AGG | - | chr7.2:77240072-77240091 | MS.gene43113:intron | 70.0% | |
| CGCTTTCACCGGCGGCGGAT+GGG | - | chr7.2:77239925-77239944 | MS.gene43113:intron | 70.0% | |
| TCCGCCGACGCTTTCACCGG+CGG | - | chr7.2:77239917-77239936 | MS.gene43113:intron | 70.0% | |
| ! | AAACGGTTCGGCGGCGACGG+TGG | + | chr7.2:77239792-77239811 | None:intergenic | 70.0% |
| ! | CACGGCGTCGAGGAAGGCGA+TGG | - | chr7.2:77240120-77240139 | MS.gene43113:intron | 70.0% |
| ! | TCCGCCGCCGGTGAAAGCGT+CGG | + | chr7.2:77239924-77239943 | None:intergenic | 70.0% |
| GCCGACGCTTTCACCGGCGG+CGG | - | chr7.2:77239920-77239939 | MS.gene43113:intron | 75.0% | |
| !! | CACCGGCGTCGGCGCTTCCT+TGG | - | chr7.2:77239819-77239838 | MS.gene43113:CDS | 75.0% |
| !! | GCCGCCGGTGAAAGCGTCGG+CGG | + | chr7.2:77239921-77239940 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 77239764 | 77242533 | 77239764 | ID=MS.gene43113 |
| chr7.2 | mRNA | 77239764 | 77242533 | 77239764 | ID=MS.gene43113.t1;Parent=MS.gene43113 |
| chr7.2 | exon | 77241908 | 77242533 | 77241908 | ID=MS.gene43113.t1.exon1;Parent=MS.gene43113.t1 |
| chr7.2 | CDS | 77241908 | 77242533 | 77241908 | ID=cds.MS.gene43113.t1;Parent=MS.gene43113.t1 |
| chr7.2 | exon | 77240934 | 77241174 | 77240934 | ID=MS.gene43113.t1.exon2;Parent=MS.gene43113.t1 |
| chr7.2 | CDS | 77240934 | 77241174 | 77240934 | ID=cds.MS.gene43113.t1;Parent=MS.gene43113.t1 |
| chr7.2 | exon | 77239957 | 77240074 | 77239957 | ID=MS.gene43113.t1.exon3;Parent=MS.gene43113.t1 |
| chr7.2 | CDS | 77239957 | 77240074 | 77239957 | ID=cds.MS.gene43113.t1;Parent=MS.gene43113.t1 |
| chr7.2 | exon | 77239764 | 77239855 | 77239764 | ID=MS.gene43113.t1.exon4;Parent=MS.gene43113.t1 |
| chr7.2 | CDS | 77239764 | 77239855 | 77239764 | ID=cds.MS.gene43113.t1;Parent=MS.gene43113.t1 |
| Gene Sequence |
| Protein sequence |
