Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43114.t1 | XP_003621746.2 | 94.3 | 383 | 21 | 1 | 1 | 382 | 1 | 383 | 1.60E-183 | 652.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43114.t1 | Q5XV40 | 35.3 | 397 | 203 | 15 | 1 | 382 | 1 | 358 | 2.7e-35 | 151.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43114.t1 | G7KUR7 | 94.3 | 383 | 21 | 1 | 1 | 382 | 1 | 383 | 1.1e-183 | 652.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050585 | MS.gene43114 | 0.827979 | 1.16E-54 | -1.69E-46 |
| MS.gene050807 | MS.gene43114 | 0.816131 | 6.48E-52 | -1.69E-46 |
| MS.gene052142 | MS.gene43114 | 0.814759 | 1.31E-51 | -1.69E-46 |
| MS.gene052698 | MS.gene43114 | 0.824387 | 8.30E-54 | -1.69E-46 |
| MS.gene053383 | MS.gene43114 | 0.811314 | 7.45E-51 | -1.69E-46 |
| MS.gene053563 | MS.gene43114 | 0.811945 | 5.43E-51 | -1.69E-46 |
| MS.gene055359 | MS.gene43114 | 0.804872 | 1.75E-49 | -1.69E-46 |
| MS.gene056005 | MS.gene43114 | 0.801435 | 9.02E-49 | -1.69E-46 |
| MS.gene059439 | MS.gene43114 | 0.809195 | 2.13E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43114.t1 | MTR_7g022360 | 96.345 | 383 | 13 | 1 | 1 | 382 | 1 | 383 | 0.0 | 759 |
| MS.gene43114.t1 | MTR_3g085710 | 44.366 | 426 | 138 | 20 | 1 | 382 | 1 | 371 | 2.02e-82 | 256 |
| MS.gene43114.t1 | MTR_7g028590 | 34.913 | 401 | 183 | 20 | 1 | 382 | 1 | 342 | 2.69e-48 | 167 |
| MS.gene43114.t1 | MTR_7g028590 | 33.846 | 325 | 155 | 16 | 1 | 318 | 1 | 272 | 8.23e-35 | 129 |
| MS.gene43114.t1 | MTR_7g028590 | 35.075 | 268 | 115 | 14 | 136 | 381 | 5 | 235 | 2.53e-25 | 103 |
| MS.gene43114.t1 | MTR_7g028350 | 27.525 | 396 | 182 | 14 | 24 | 382 | 1 | 328 | 6.60e-20 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43114.t1 | AT5G14090 | 35.768 | 397 | 201 | 16 | 1 | 382 | 1 | 358 | 7.19e-48 | 166 |
| MS.gene43114.t1 | AT5G14090 | 39.130 | 253 | 125 | 9 | 1 | 252 | 1 | 225 | 4.29e-38 | 139 |
| MS.gene43114.t1 | AT3G27025 | 28.866 | 291 | 136 | 12 | 95 | 382 | 67 | 289 | 6.65e-12 | 66.2 |
Find 55 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCCAACTGTTGAACTTTC+TGG | 0.088694 | 7.2:+77252613 | None:intergenic |
| AATTCTTGCAATTGTCTATC+AGG | 0.239515 | 7.2:-77255035 | MS.gene43114:CDS |
| TTGGCTGATGAGATTTCTTT+TGG | 0.260026 | 7.2:-77254375 | MS.gene43114:CDS |
| GTTGATGGATTTGATGAAAT+TGG | 0.270523 | 7.2:+77254783 | None:intergenic |
| CAAGAAGATGAATCTTCTTC+TGG | 0.279543 | 7.2:+77252508 | None:intergenic |
| TTCCCTGGCTTCCTTGCAAT+TGG | 0.280658 | 7.2:-77254825 | MS.gene43114:CDS |
| GAAATATTCTGCTTTGAATA+TGG | 0.298504 | 7.2:-77254304 | MS.gene43114:CDS |
| GAAGAACATGAAGAAGAATA+TGG | 0.306054 | 7.2:-77254885 | MS.gene43114:CDS |
| TTGAATCTGATTCCAAGATT+TGG | 0.307455 | 7.2:+77254972 | None:intergenic |
| TACAGAACCATTCAAAGATT+TGG | 0.321359 | 7.2:-77256065 | MS.gene43114:CDS |
| CCTTTACAAGGTTATTTGTT+TGG | 0.326980 | 7.2:-77254489 | MS.gene43114:CDS |
| GATGAGTTAGAGAAAGTTCT+TGG | 0.327038 | 7.2:-77254675 | MS.gene43114:CDS |
| TTTGTGTCTGTTCCTTCAAT+TGG | 0.329555 | 7.2:+77254522 | None:intergenic |
| AAGAAGATTCATCTTCTTGC+AGG | 0.336701 | 7.2:-77252504 | MS.gene43114:CDS |
| CCATTCAAAGATTTGGTCAT+TGG | 0.344166 | 7.2:-77256058 | MS.gene43114:intron |
| AGCTGAGAGTAAACTCAATA+AGG | 0.352063 | 7.2:-77254196 | MS.gene43114:intron |
| AACTTCAGAAAATCATTTGC+TGG | 0.355575 | 7.2:-77254924 | MS.gene43114:CDS |
| AATTCTTTGTTGCAGTTACT+TGG | 0.374830 | 7.2:-77256121 | MS.gene43114:intron |
| ATTTGAAATGATGGTGTTGA+TGG | 0.382144 | 7.2:+77254768 | None:intergenic |
| GCTATGTTTGATCTCTTCCC+TGG | 0.391065 | 7.2:-77254840 | MS.gene43114:CDS |
| TCAACAGTTGGACACAAATC+TGG | 0.407798 | 7.2:-77252604 | MS.gene43114:CDS |
| CATCTTCTTGCAGGGAGCAT+TGG | 0.416708 | 7.2:-77252495 | MS.gene43114:CDS |
| TCTAGATTCTCCATATGTTC+CGG | 0.422180 | 7.2:-77252648 | MS.gene43114:intron |
| GTTCCAATTGCAAGGAAGCC+AGG | 0.422492 | 7.2:+77254822 | None:intergenic |
| CCAATGACCAAATCTTTGAA+TGG | 0.422656 | 7.2:+77256058 | None:intergenic |
| TTCCTTGCAATTGGAACACT+TGG | 0.425497 | 7.2:-77254816 | MS.gene43114:CDS |
| CTTTGTTGCAGTTACTTGGC+TGG | 0.428583 | 7.2:-77256117 | MS.gene43114:intron |
| ATGCACAAGGTAGCCTTTGT+TGG | 0.429984 | 7.2:+77252531 | None:intergenic |
| TGAACTGAGATTTGAAATGA+TGG | 0.462331 | 7.2:+77254759 | None:intergenic |
| TGCACAAGGTAGCCTTTGTT+GGG | 0.462363 | 7.2:+77252532 | None:intergenic |
| CTGCTTGAAGAATCATAGCT+TGG | 0.479883 | 7.2:+77254630 | None:intergenic |
| GTCAGCATAGTAACAATAAG+TGG | 0.484365 | 7.2:-77254549 | MS.gene43114:CDS |
| TACTTCTTCCAGTGCTGACA+TGG | 0.492523 | 7.2:+77254601 | None:intergenic |
| TACTTCTTCCAGTGCTGACA+TGG | 0.496234 | 7.2:+77254577 | None:intergenic |
| ATTTGATAAAAGAAATGAAA+GGG | 0.497913 | 7.2:-77254334 | MS.gene43114:CDS |
| AATGCTGTTTGTCCTTTACA+AGG | 0.501835 | 7.2:-77254501 | MS.gene43114:CDS |
| AGAAGTAGCCATGTCAGCAC+TGG | 0.514813 | 7.2:-77254585 | MS.gene43114:CDS |
| AGTTACTTGGCTGGATGCAT+AGG | 0.536259 | 7.2:-77256108 | MS.gene43114:CDS |
| TTCCAAGTGTTCCAATTGCA+AGG | 0.537713 | 7.2:+77254814 | None:intergenic |
| ATAAGTGGAAAACCAATTGA+AGG | 0.538137 | 7.2:-77254534 | MS.gene43114:CDS |
| ATTCTTGCAATTGTCTATCA+GGG | 0.538206 | 7.2:-77255034 | MS.gene43114:CDS |
| ATGGATTTGATGAAATTGGT+TGG | 0.539687 | 7.2:+77254787 | None:intergenic |
| CCAAACAAATAACCTTGTAA+AGG | 0.544230 | 7.2:+77254489 | None:intergenic |
| AGAAACAGCCATGTCAGCAC+TGG | 0.552963 | 7.2:-77254609 | MS.gene43114:CDS |
| TTCCAATTGCAAGGAAGCCA+GGG | 0.572756 | 7.2:+77254823 | None:intergenic |
| AGAAGATTCATCTTCTTGCA+GGG | 0.588231 | 7.2:-77252503 | MS.gene43114:CDS |
| GAAACAGCAGTTACTAGTGT+TGG | 0.588615 | 7.2:-77254447 | MS.gene43114:CDS |
| AATCTCAGTTCAAACCATAA+CGG | 0.593741 | 7.2:-77254748 | MS.gene43114:CDS |
| CATCCAGAAAGTTCAACAGT+TGG | 0.600759 | 7.2:-77252616 | MS.gene43114:CDS |
| TTATTGTTACTATGCTGACA+TGG | 0.607345 | 7.2:+77254553 | None:intergenic |
| AAAGAGCATAGGACTTCACT+AGG | 0.619151 | 7.2:-77254420 | MS.gene43114:CDS |
| AATTTGATAAAAGAAATGAA+AGG | 0.633612 | 7.2:-77254335 | MS.gene43114:CDS |
| AATGATGGAGGTCCCAACAA+AGG | 0.636070 | 7.2:-77252544 | MS.gene43114:CDS |
| AATCTTCTTCTGGATGCACA+AGG | 0.662162 | 7.2:+77252518 | None:intergenic |
| GTGTTGGTAAGAAAGAGCAT+AGG | 0.662195 | 7.2:-77254431 | MS.gene43114:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATATTTTAATTATTTT+TGG | - | chr7.2:77254503-77254522 | MS.gene43114:CDS | 0.0% |
| !! | AATATACTACAAAATATATA+TGG | + | chr7.2:77255267-77255286 | None:intergenic | 10.0% |
| !! | TAAATAATTAATGTGATTTA+AGG | - | chr7.2:77254705-77254724 | MS.gene43114:CDS | 10.0% |
| !!! | TATTTTAATTATTTTTGGTT+AGG | - | chr7.2:77254508-77254527 | MS.gene43114:CDS | 10.0% |
| !!! | TTTTTACTATTTTATTTTGA+TGG | + | chr7.2:77251988-77252007 | None:intergenic | 10.0% |
| !!! | TTTTTTCAAATTTTCTAAAT+TGG | + | chr7.2:77254207-77254226 | None:intergenic | 10.0% |
| !! | AAAAAAGTTAATCATATTTG+AGG | + | chr7.2:77252530-77252549 | None:intergenic | 15.0% |
| !! | AAAAATGAATATTGAATATG+TGG | + | chr7.2:77255586-77255605 | None:intergenic | 15.0% |
| !! | AAATTATCTTCTAATTAAGT+TGG | - | chr7.2:77251542-77251561 | MS.gene43114:intron | 15.0% |
| !! | AATATATACTATAAGAAAAG+TGG | - | chr7.2:77254092-77254111 | MS.gene43114:intron | 15.0% |
| !! | AATTTGATAAAAGAAATGAA+AGG | - | chr7.2:77253363-77253382 | MS.gene43114:intron | 15.0% |
| !! | ATAAATTACCATATCATATA+AGG | + | chr7.2:77254657-77254676 | None:intergenic | 15.0% |
| !! | ATTAAACTTAAAAGTTATAG+TGG | + | chr7.2:77252410-77252429 | None:intergenic | 15.0% |
| !! | ATTTGATAAAAGAAATGAAA+GGG | - | chr7.2:77253364-77253383 | MS.gene43114:intron | 15.0% |
| !! | GAACTTATGAAAAAAATTTA+CGG | + | chr7.2:77251895-77251914 | None:intergenic | 15.0% |
| !! | TAGAAAATTTGAAAAAAGTA+GGG | - | chr7.2:77254210-77254229 | MS.gene43114:CDS | 15.0% |
| !! | TTAGAAAATTTGAAAAAAGT+AGG | - | chr7.2:77254209-77254228 | MS.gene43114:CDS | 15.0% |
| !!! | AATCATAGTTTATAACATTT+TGG | - | chr7.2:77254828-77254847 | MS.gene43114:CDS | 15.0% |
| !!! | AATTTTCAATTTTTTTTTGG+TGG | + | chr7.2:77253931-77253950 | None:intergenic | 15.0% |
| !!! | AATTTTTTCATAAACAAAGA+AGG | + | chr7.2:77254912-77254931 | None:intergenic | 15.0% |
| !!! | AGAAAATAAGCAATTTTAAA+AGG | + | chr7.2:77255798-77255817 | None:intergenic | 15.0% |
| !!! | AGAAGATAATTTTATATGAT+TGG | + | chr7.2:77251534-77251553 | None:intergenic | 15.0% |
| !!! | ATCAATTTTAAAAGAAAGAA+GGG | - | chr7.2:77255995-77256014 | MS.gene43114:intron | 15.0% |
| !!! | ATCATAGTTTATAACATTTT+GGG | - | chr7.2:77254829-77254848 | MS.gene43114:CDS | 15.0% |
| !!! | ATGATTATAAATTTTGGATT+TGG | - | chr7.2:77255025-77255044 | MS.gene43114:CDS | 15.0% |
| !!! | GAAAATAAGCAATTTTAAAA+GGG | + | chr7.2:77255797-77255816 | None:intergenic | 15.0% |
| !!! | TAATTTTTGTTGTTAGAATA+GGG | - | chr7.2:77254006-77254025 | MS.gene43114:intron | 15.0% |
| !!! | TGTACATTATAATTATTTTC+AGG | + | chr7.2:77255297-77255316 | None:intergenic | 15.0% |
| !!! | TTTTGAATTTGAAATATGAT+TGG | - | chr7.2:77254405-77254424 | MS.gene43114:CDS | 15.0% |
| !!! | TTTTTTCTTCTAAATTATGA+TGG | - | chr7.2:77253667-77253686 | MS.gene43114:intron | 15.0% |
| !! | AATAATGAATTTACCAATCA+TGG | - | chr7.2:77252024-77252043 | MS.gene43114:intron | 20.0% |
| !! | AATATGCGAAAAAATAATGT+AGG | - | chr7.2:77254868-77254887 | MS.gene43114:CDS | 20.0% |
| !! | AATATGTTTGGAAAATGTTT+GGG | - | chr7.2:77253806-77253825 | MS.gene43114:intron | 20.0% |
| !! | AATTTGTATCACAATATGTT+TGG | - | chr7.2:77253794-77253813 | MS.gene43114:intron | 20.0% |
| !! | ACTCTTAATGTCATATTATT+AGG | - | chr7.2:77255757-77255776 | MS.gene43114:intron | 20.0% |
| !! | AGAAAATTTGAAAAAAGTAG+GGG | - | chr7.2:77254211-77254230 | MS.gene43114:CDS | 20.0% |
| !! | ATACTTACAATATTATAGCT+CGG | - | chr7.2:77254377-77254396 | MS.gene43114:CDS | 20.0% |
| !! | ATCAGTTGTAAATTATCAAT+TGG | + | chr7.2:77256079-77256098 | None:intergenic | 20.0% |
| !! | GAACAAACAAATACATATAT+AGG | + | chr7.2:77256172-77256191 | None:intergenic | 20.0% |
| !! | GCATAAAATAAAAATATGCA+AGG | - | chr7.2:77253883-77253902 | MS.gene43114:intron | 20.0% |
| !! | TTAAAATTTGCCATGTTTAA+AGG | - | chr7.2:77252503-77252522 | MS.gene43114:CDS | 20.0% |
| !!! | AAATTAATATTTTGAGAAGC+TGG | - | chr7.2:77254146-77254165 | MS.gene43114:intron | 20.0% |
| !!! | ATTTTTCAAAGTTATCAATG+AGG | + | chr7.2:77255456-77255475 | None:intergenic | 20.0% |
| !!! | CTGTTCATGATTATAAATTT+TGG | - | chr7.2:77255019-77255038 | MS.gene43114:CDS | 20.0% |
| !!! | GATCAATTTTAAAAGAAAGA+AGG | - | chr7.2:77255994-77256013 | MS.gene43114:intron | 20.0% |
| !!! | GTAATTTTTGTTGTTAGAAT+AGG | - | chr7.2:77254005-77254024 | MS.gene43114:intron | 20.0% |
| !!! | TAAGGATAATTTGAAATTCA+CGG | - | chr7.2:77254315-77254334 | MS.gene43114:CDS | 20.0% |
| !!! | TCATAGTTTATAACATTTTG+GGG | - | chr7.2:77254830-77254849 | MS.gene43114:CDS | 20.0% |
| !!! | TTTTAAACTCGACTTTTTAT+TGG | + | chr7.2:77255666-77255685 | None:intergenic | 20.0% |
| !!! | TTTTGTTTTCGTAAGTTATT+TGG | - | chr7.2:77251829-77251848 | MS.gene43114:intron | 20.0% |
| ! | AAATAAAAATATGCAAGGTC+CGG | - | chr7.2:77253888-77253907 | MS.gene43114:intron | 25.0% |
| ! | AAGAAGAAAAACATGAATGA+TGG | - | chr7.2:77255139-77255158 | MS.gene43114:intron | 25.0% |
| ! | ATTACTCTTGTCTAATTAAG+AGG | - | chr7.2:77252297-77252316 | MS.gene43114:intron | 25.0% |
| ! | CAATATGTTTGGAAAATGTT+TGG | - | chr7.2:77253805-77253824 | MS.gene43114:intron | 25.0% |
| ! | CTCATGTTAAATATCAAAAG+CGG | + | chr7.2:77254771-77254790 | None:intergenic | 25.0% |
| ! | CTTATAGTCAAGATATGAAT+AGG | + | chr7.2:77252448-77252467 | None:intergenic | 25.0% |
| ! | TAGAAGAAAAGAATCACTAA+TGG | - | chr7.2:77255419-77255438 | MS.gene43114:intron | 25.0% |
| ! | TAGCACATAACTTTATTCAA+TGG | + | chr7.2:77252159-77252178 | None:intergenic | 25.0% |
| ! | TATCAAACATGCATCTATTT+CGG | + | chr7.2:77253591-77253610 | None:intergenic | 25.0% |
| ! | TATCATCAAAAACCAAATCT+TGG | - | chr7.2:77252714-77252733 | MS.gene43114:intron | 25.0% |
| ! | TCATGTTAAATATCAAAAGC+GGG | + | chr7.2:77254770-77254789 | None:intergenic | 25.0% |
| ! | TCTGAAAACCTTATATGATA+TGG | - | chr7.2:77254646-77254665 | MS.gene43114:CDS | 25.0% |
| ! | TTAAATAGTCAATGCATGTT+AGG | + | chr7.2:77251715-77251734 | None:intergenic | 25.0% |
| !! | AATCTTTTGTACCAATCAAT+AGG | - | chr7.2:77252232-77252251 | MS.gene43114:intron | 25.0% |
| !! | ATAGTTTATAACATTTTGGG+GGG | - | chr7.2:77254832-77254851 | MS.gene43114:CDS | 25.0% |
| !! | CATAGTTTATAACATTTTGG+GGG | - | chr7.2:77254831-77254850 | MS.gene43114:CDS | 25.0% |
| !! | GAAATATTCTGCTTTGAATA+TGG | - | chr7.2:77253394-77253413 | MS.gene43114:intron | 25.0% |
| !! | TCTTTTTGTGATATAGTGAA+AGG | + | chr7.2:77255375-77255394 | None:intergenic | 25.0% |
| !! | TTTATTCAATGGTTGTTGTT+AGG | + | chr7.2:77252148-77252167 | None:intergenic | 25.0% |
| !!! | ACTTTTTCAGAGAAGTAAAT+TGG | - | chr7.2:77253304-77253323 | MS.gene43114:intron | 25.0% |
| !!! | ATGTTTAGACTCACTTTTAA+GGG | - | chr7.2:77252471-77252490 | MS.gene43114:intron | 25.0% |
| !!! | GGTTTAATCACTTTTTAAGT+CGG | + | chr7.2:77255896-77255915 | None:intergenic | 25.0% |
| !!! | GTTTAATCACTTTTTAAGTC+GGG | + | chr7.2:77255895-77255914 | None:intergenic | 25.0% |
| !!! | TATTATAGTTTAGTTCTCCT+TGG | + | chr7.2:77252077-77252096 | None:intergenic | 25.0% |
| !!! | TCGTTGTTTAAAGCAATTTT+TGG | - | chr7.2:77252549-77252568 | MS.gene43114:CDS | 25.0% |
| !!! | TTACTTTCGAAATTTTTCAG+CGG | + | chr7.2:77255949-77255968 | None:intergenic | 25.0% |
| !!! | TTTCAATTTTTTTTTGGTGG+TGG | + | chr7.2:77253928-77253947 | None:intergenic | 25.0% |
| AAAAATAGGGATGAGTTTAC+AGG | + | chr7.2:77254973-77254992 | None:intergenic | 30.0% | |
| AAAAATTCTTCATCTGCGAA+TGG | - | chr7.2:77253458-77253477 | MS.gene43114:intron | 30.0% | |
| AAAATAGGGATGAGTTTACA+GGG | + | chr7.2:77254972-77254991 | None:intergenic | 30.0% | |
| AACTTCAGAAAATCATTTGC+TGG | - | chr7.2:77252774-77252793 | MS.gene43114:intron | 30.0% | |
| AAGAAAAACATGAATGATGG+AGG | - | chr7.2:77255142-77255161 | MS.gene43114:intron | 30.0% | |
| AATAAAAATATGCAAGGTCC+GGG | - | chr7.2:77253889-77253908 | MS.gene43114:intron | 30.0% | |
| AATCTCAGTTCAAACCATAA+CGG | - | chr7.2:77252950-77252969 | MS.gene43114:intron | 30.0% | |
| AATTCTTGCAATTGTCTATC+AGG | - | chr7.2:77252663-77252682 | MS.gene43114:intron | 30.0% | |
| AATTCTTTGTTGCAGTTACT+TGG | - | chr7.2:77251577-77251596 | MS.gene43114:intron | 30.0% | |
| AGAAGGGATATACTTATCAA+TGG | + | chr7.2:77256042-77256061 | None:intergenic | 30.0% | |
| ATAAGTGGAAAACCAATTGA+AGG | - | chr7.2:77253164-77253183 | MS.gene43114:intron | 30.0% | |
| ATCTACCCAGACTAAAAATA+GGG | + | chr7.2:77254986-77255005 | None:intergenic | 30.0% | |
| ATGGATTTGATGAAATTGGT+TGG | + | chr7.2:77252914-77252933 | None:intergenic | 30.0% | |
| ATGTTTCATCTCATTGAGAT+AGG | + | chr7.2:77255713-77255732 | None:intergenic | 30.0% | |
| ATTCTTGCAATTGTCTATCA+GGG | - | chr7.2:77252664-77252683 | MS.gene43114:intron | 30.0% | |
| CCAAACAAATAACCTTGTAA+AGG | + | chr7.2:77253212-77253231 | None:intergenic | 30.0% | |
| CCTTTACAAGGTTATTTGTT+TGG | - | chr7.2:77253209-77253228 | MS.gene43114:intron | 30.0% | |
| GAAGAACATGAAGAAGAATA+TGG | - | chr7.2:77252813-77252832 | MS.gene43114:intron | 30.0% | |
| GTTAGGTAAATTGTCTTCTT+GGG | + | chr7.2:77252131-77252150 | None:intergenic | 30.0% | |
| TACAGAACCATTCAAAGATT+TGG | - | chr7.2:77251633-77251652 | MS.gene43114:intron | 30.0% | |
| TATCTACCCAGACTAAAAAT+AGG | + | chr7.2:77254987-77255006 | None:intergenic | 30.0% | |
| TATTTGAGGACCTTTAAACA+TGG | + | chr7.2:77252516-77252535 | None:intergenic | 30.0% | |
| TGTTAGGTAAATTGTCTTCT+TGG | + | chr7.2:77252132-77252151 | None:intergenic | 30.0% | |
| TTATTGTTACTATGCTGACA+TGG | + | chr7.2:77253148-77253167 | None:intergenic | 30.0% | |
| TTCGAAAGTAAGTTAACTTC+CGG | - | chr7.2:77255958-77255977 | MS.gene43114:intron | 30.0% | |
| TTGAATCTGATTCCAAGATT+TGG | + | chr7.2:77252729-77252748 | None:intergenic | 30.0% | |
| TTTCGTTAAAAGCGAGTTTA+AGG | + | chr7.2:77252620-77252639 | None:intergenic | 30.0% | |
| ! | AAGTATATCCCTTCTTTTGT+TGG | - | chr7.2:77256047-77256066 | MS.gene43114:intron | 30.0% |
| ! | AATCAATTTTTCTATGTCGC+AGG | - | chr7.2:77252639-77252658 | MS.gene43114:CDS | 30.0% |
| ! | ATTTGAAATGATGGTGTTGA+TGG | + | chr7.2:77252933-77252952 | None:intergenic | 30.0% |
| ! | CTTTGTTTGAATTGCGTTAT+TGG | + | chr7.2:77251956-77251975 | None:intergenic | 30.0% |
| ! | CTTTTCAACATGGTTTCAAA+CGG | - | chr7.2:77252384-77252403 | MS.gene43114:intron | 30.0% |
| ! | TCATATAAGGTTTTCAGACT+CGG | + | chr7.2:77254644-77254663 | None:intergenic | 30.0% |
| ! | TGAACTGAGATTTGAAATGA+TGG | + | chr7.2:77252942-77252961 | None:intergenic | 30.0% |
| ! | TTCGTTTTCATTTTCCGTTA+TGG | + | chr7.2:77252967-77252986 | None:intergenic | 30.0% |
| ! | TTTTAGTCTGGGTAGATAAA+TGG | - | chr7.2:77254989-77255008 | MS.gene43114:CDS | 30.0% |
| ! | TTTTGTGATATAGTGAAAGG+AGG | + | chr7.2:77255372-77255391 | None:intergenic | 30.0% |
| ! | TTTTGTTCTTCATCAAGTGA+TGG | + | chr7.2:77252693-77252712 | None:intergenic | 30.0% |
| !! | CATGTTTAGACTCACTTTTA+AGG | - | chr7.2:77252470-77252489 | MS.gene43114:intron | 30.0% |
| !! | GTTGATGGATTTGATGAAAT+TGG | + | chr7.2:77252918-77252937 | None:intergenic | 30.0% |
| !! | TGCTTATTTTCTTGATCCAA+CGG | - | chr7.2:77255806-77255825 | MS.gene43114:intron | 30.0% |
| !! | TTAATATTTTGAGAAGCTGG+AGG | - | chr7.2:77254149-77254168 | MS.gene43114:intron | 30.0% |
| !!! | AACTCACGTACTTTTAAGAT+TGG | - | chr7.2:77255865-77255884 | MS.gene43114:intron | 30.0% |
| !!! | GATTGGTTTTGATTCTGAAA+AGG | + | chr7.2:77251517-77251536 | None:intergenic | 30.0% |
| !!! | GATTTTCTGAAGTTGTTTTG+AGG | + | chr7.2:77252768-77252787 | None:intergenic | 30.0% |
| !!! | TTTCTGGATGAACTTTTTTC+CGG | + | chr7.2:77255072-77255091 | None:intergenic | 30.0% |
| !!! | TTTTATTTTGATGGCCATCA+AGG | + | chr7.2:77251979-77251998 | None:intergenic | 30.0% |
| AAAGAATCACTAATGGTGTG+TGG | - | chr7.2:77255426-77255445 | MS.gene43114:intron | 35.0% | |
| AAATAGGGATGAGTTTACAG+GGG | + | chr7.2:77254971-77254990 | None:intergenic | 35.0% | |
| AAGAAGATTCATCTTCTTGC+AGG | - | chr7.2:77255194-77255213 | MS.gene43114:intron | 35.0% | |
| ACCAATCATGGATGAGTAAT+TGG | - | chr7.2:77252036-77252055 | MS.gene43114:intron | 35.0% | |
| AGAAGATTCATCTTCTTGCA+GGG | - | chr7.2:77255195-77255214 | MS.gene43114:intron | 35.0% | |
| AGCTGAGAGTAAACTCAATA+AGG | - | chr7.2:77253502-77253521 | MS.gene43114:intron | 35.0% | |
| ATAAAAATATGCAAGGTCCG+GGG | - | chr7.2:77253890-77253909 | MS.gene43114:intron | 35.0% | |
| ATAGATCGCATGTCAGATTT+AGG | + | chr7.2:77254601-77254620 | None:intergenic | 35.0% | |
| CAAGAAGATGAATCTTCTTC+TGG | + | chr7.2:77255193-77255212 | None:intergenic | 35.0% | |
| CAATTCAAACAAAGCCTTGA+TGG | - | chr7.2:77251962-77251981 | MS.gene43114:intron | 35.0% | |
| CATGAGCTCATCAATTTATG+TGG | + | chr7.2:77255633-77255652 | None:intergenic | 35.0% | |
| CCAATGACCAAATCTTTGAA+TGG | + | chr7.2:77251643-77251662 | None:intergenic | 35.0% | |
| GATGAGTTAGAGAAAGTTCT+TGG | - | chr7.2:77253023-77253042 | MS.gene43114:intron | 35.0% | |
| GGCTATATCCAACAAAAGAA+GGG | + | chr7.2:77256058-77256077 | None:intergenic | 35.0% | |
| GGCTTTCTCATTATTGTTGT+AGG | + | chr7.2:77255336-77255355 | None:intergenic | 35.0% | |
| GTCAGCATAGTAACAATAAG+TGG | - | chr7.2:77253149-77253168 | MS.gene43114:intron | 35.0% | |
| GTTAGGAGTGAGAATAAGTT+AGG | - | chr7.2:77254525-77254544 | MS.gene43114:CDS | 35.0% | |
| TAGATGCATGTTTGATATCG+TGG | - | chr7.2:77253594-77253613 | MS.gene43114:intron | 35.0% | |
| TCCAATTACTCATCCATGAT+TGG | + | chr7.2:77252040-77252059 | None:intergenic | 35.0% | |
| TCTAGATTCTCCATATGTTC+CGG | - | chr7.2:77255050-77255069 | MS.gene43114:intron | 35.0% | |
| TCTGACATGCGATCTATTAT+AGG | - | chr7.2:77254604-77254623 | MS.gene43114:CDS | 35.0% | |
| TGGCTATATCCAACAAAAGA+AGG | + | chr7.2:77256059-77256078 | None:intergenic | 35.0% | |
| TTTGTGTCTGTTCCTTCAAT+TGG | + | chr7.2:77253179-77253198 | None:intergenic | 35.0% | |
| ! | AATGCTGTTTGTCCTTTACA+AGG | - | chr7.2:77253197-77253216 | MS.gene43114:intron | 35.0% |
| ! | CCATTCAAAGATTTGGTCAT+TGG | - | chr7.2:77251640-77251659 | MS.gene43114:intron | 35.0% |
| ! | CGTTTGAAACCATGTTGAAA+AGG | + | chr7.2:77252386-77252405 | None:intergenic | 35.0% |
| ! | TCCAAAGCAACAATTTTGAG+CGG | - | chr7.2:77252338-77252357 | MS.gene43114:intron | 35.0% |
| ! | TTGGCTGATGAGATTTCTTT+TGG | - | chr7.2:77253323-77253342 | MS.gene43114:intron | 35.0% |
| !! | CACGCTGACACTTTTTAAAT+CGG | + | chr7.2:77255917-77255936 | None:intergenic | 35.0% |
| !! | GCTTATTTTCTTGATCCAAC+GGG | - | chr7.2:77255807-77255826 | MS.gene43114:intron | 35.0% |
| !! | TAGACTCACTTTTAAGGGAA+CGG | - | chr7.2:77252476-77252495 | MS.gene43114:CDS | 35.0% |
| !! | TTCTTGTATATGCCACTTTG+AGG | - | chr7.2:77256101-77256120 | MS.gene43114:CDS | 35.0% |
| !!! | AATTTTTTTTTGGTGGTGGC+CGG | + | chr7.2:77253924-77253943 | None:intergenic | 35.0% |
| !!! | ACTCATCCCTATTTTTAGTC+TGG | - | chr7.2:77254977-77254996 | MS.gene43114:CDS | 35.0% |
| !!! | CTCATCCCTATTTTTAGTCT+GGG | - | chr7.2:77254978-77254997 | MS.gene43114:CDS | 35.0% |
| !!! | GAACTTTTTTCCGGAACATA+TGG | + | chr7.2:77255063-77255082 | None:intergenic | 35.0% |
| AAAGGAGGAGGATACAAGTA+GGG | + | chr7.2:77255357-77255376 | None:intergenic | 40.0% | |
| AAGTTAACTTCCGGTGGATA+AGG | - | chr7.2:77255967-77255986 | MS.gene43114:intron | 40.0% | |
| AATCTTCTTCTGGATGCACA+AGG | + | chr7.2:77255183-77255202 | None:intergenic | 40.0% | |
| AGGCAAGGTGTAACAGAATA+TGG | + | chr7.2:77256134-77256153 | None:intergenic | 40.0% | |
| AGTTAACTTCCGGTGGATAA+GGG | - | chr7.2:77255968-77255987 | MS.gene43114:intron | 40.0% | |
| ATAGGCGTGCTAAAAGTAGT+AGG | + | chr7.2:77256154-77256173 | None:intergenic | 40.0% | |
| ATGTTGCGTCTCCTATTGAT+TGG | + | chr7.2:77252246-77252265 | None:intergenic | 40.0% | |
| CATCCAGAAAGTTCAACAGT+TGG | - | chr7.2:77255082-77255101 | MS.gene43114:intron | 40.0% | |
| CTGCTTGAAGAATCATAGCT+TGG | + | chr7.2:77253071-77253090 | None:intergenic | 40.0% | |
| GAAACAGCAGTTACTAGTGT+TGG | - | chr7.2:77253251-77253270 | MS.gene43114:intron | 40.0% | |
| GAAAGTAAGTTAACTTCCGG+TGG | - | chr7.2:77255961-77255980 | MS.gene43114:intron | 40.0% | |
| GGCAAGGTGTAACAGAATAT+GGG | + | chr7.2:77256133-77256152 | None:intergenic | 40.0% | |
| GGGACGATAATCATTCTTAG+CGG | - | chr7.2:77252359-77252378 | MS.gene43114:intron | 40.0% | |
| GTAGCTTGAAAACAGCATGT+TGG | + | chr7.2:77251670-77251689 | None:intergenic | 40.0% | |
| TCAACAGTTGGACACAAATC+TGG | - | chr7.2:77255094-77255113 | MS.gene43114:intron | 40.0% | |
| TGTCCAACTGTTGAACTTTC+TGG | + | chr7.2:77255088-77255107 | None:intergenic | 40.0% | |
| TGTGATATAGTGAAAGGAGG+AGG | + | chr7.2:77255369-77255388 | None:intergenic | 40.0% | |
| TTCCAAGTGTTCCAATTGCA+AGG | + | chr7.2:77252887-77252906 | None:intergenic | 40.0% | |
| TTCCTTGCAATTGGAACACT+TGG | - | chr7.2:77252882-77252901 | MS.gene43114:intron | 40.0% | |
| TTGATCATTCCCTTATCCAC+CGG | + | chr7.2:77255980-77255999 | None:intergenic | 40.0% | |
| ! | AAAGAGCATAGGACTTCACT+AGG | - | chr7.2:77253278-77253297 | MS.gene43114:intron | 40.0% |
| ! | CCAAAGCAACAATTTTGAGC+GGG | - | chr7.2:77252339-77252358 | MS.gene43114:intron | 40.0% |
| ! | GCTTTGGACAACATTTGAAG+AGG | + | chr7.2:77252326-77252345 | None:intergenic | 40.0% |
| ! | GTGTTGGTAAGAAAGAGCAT+AGG | - | chr7.2:77253267-77253286 | MS.gene43114:intron | 40.0% |
| ! | TGAGTTTAGCTCAGTTGGTA+AGG | - | chr7.2:77253855-77253874 | MS.gene43114:intron | 40.0% |
| !!! | ATTTTTTTTTGGTGGTGGCC+GGG | + | chr7.2:77253923-77253942 | None:intergenic | 40.0% |
| AGTTACTTGGCTGGATGCAT+AGG | - | chr7.2:77251590-77251609 | MS.gene43114:intron | 45.0% | |
| ATGCACAAGGTAGCCTTTGT+TGG | + | chr7.2:77255170-77255189 | None:intergenic | 45.0% | |
| CGTGCTAAAAGTAGTAGGCA+AGG | + | chr7.2:77256149-77256168 | None:intergenic | 45.0% | |
| CTTTGTTGCAGTTACTTGGC+TGG | - | chr7.2:77251581-77251600 | MS.gene43114:intron | 45.0% | |
| GAAAGGAGGAGGATACAAGT+AGG | + | chr7.2:77255358-77255377 | None:intergenic | 45.0% | |
| GCTATGTTTGATCTCTTCCC+TGG | - | chr7.2:77252858-77252877 | MS.gene43114:intron | 45.0% | |
| TGCACAAGGTAGCCTTTGTT+GGG | + | chr7.2:77255169-77255188 | None:intergenic | 45.0% | |
| TTCCAATTGCAAGGAAGCCA+GGG | + | chr7.2:77252878-77252897 | None:intergenic | 45.0% | |
| ! | AATGATGGAGGTCCCAACAA+AGG | - | chr7.2:77255154-77255173 | MS.gene43114:intron | 45.0% |
| ! | CCCGCTCAAAATTGTTGCTT+TGG | + | chr7.2:77252342-77252361 | None:intergenic | 45.0% |
| ! | GGAACAAAAGTATGCAGCCA+AGG | - | chr7.2:77252057-77252076 | MS.gene43114:intron | 45.0% |
| !! | CTTAGCGGACCTTTTCAACA+TGG | - | chr7.2:77252374-77252393 | MS.gene43114:intron | 45.0% |
| !! | TACTTCTTCCAGTGCTGACA+TGG | + | chr7.2:77253100-77253119 | None:intergenic | 45.0% |
| !! | TCACGCTCGACATTTTTCAG+TGG | - | chr7.2:77255837-77255856 | MS.gene43114:intron | 45.0% |
| !! | TGTATATGCCACTTTGAGGC+TGG | - | chr7.2:77256105-77256124 | MS.gene43114:CDS | 45.0% |
| !!! | TTTTTTTTTGGTGGTGGCCG+GGG | + | chr7.2:77253922-77253941 | None:intergenic | 45.0% |
| !!! | AAAAAATTGATAATTTTATA+AGG | - | chr7.2:77254297-77254316 | MS.gene43114:CDS | 5.0% |
| !!! | AAAATTATCAATTTTTTTTT+AGG | + | chr7.2:77254294-77254313 | None:intergenic | 5.0% |
| !!! | AAATTATCAATTTTTTTTTA+GGG | + | chr7.2:77254293-77254312 | None:intergenic | 5.0% |
| !!! | ATATTATATTATATTTTATG+AGG | + | chr7.2:77254491-77254510 | None:intergenic | 5.0% |
| !!! | TAAAATTTTCAATTTTTTTT+TGG | + | chr7.2:77253934-77253953 | None:intergenic | 5.0% |
| !!! | TATATAAATTTTAAAAGTTT+TGG | - | chr7.2:77254057-77254076 | MS.gene43114:intron | 5.0% |
| AGAAACAGCCATGTCAGCAC+TGG | - | chr7.2:77253089-77253108 | MS.gene43114:intron | 50.0% | |
| AGAAGTAGCCATGTCAGCAC+TGG | - | chr7.2:77253113-77253132 | MS.gene43114:intron | 50.0% | |
| AGCTACGACAGGTCAAGACA+GGG | + | chr7.2:77254937-77254956 | None:intergenic | 50.0% | |
| CCAACTGAGCTAAACTCACG+AGG | + | chr7.2:77253853-77253872 | None:intergenic | 50.0% | |
| CCTGTCGTAGCTAACGTTGT+CGG | - | chr7.2:77254945-77254964 | MS.gene43114:CDS | 50.0% | |
| GTTCCAATTGCAAGGAAGCC+AGG | + | chr7.2:77252879-77252898 | None:intergenic | 50.0% | |
| TAGCTACGACAGGTCAAGAC+AGG | + | chr7.2:77254938-77254957 | None:intergenic | 50.0% | |
| TTCCCTGGCTTCCTTGCAAT+TGG | - | chr7.2:77252873-77252892 | MS.gene43114:intron | 50.0% | |
| ! | CATCTTCTTGCAGGGAGCAT+TGG | - | chr7.2:77255203-77255222 | MS.gene43114:intron | 50.0% |
| ! | CCTCGTGAGTTTAGCTCAGT+TGG | - | chr7.2:77253850-77253869 | MS.gene43114:intron | 50.0% |
| CCGACAACGTTAGCTACGAC+AGG | + | chr7.2:77254948-77254967 | None:intergenic | 55.0% | |
| GAGCGTGAGTTAACTCCCGT+TGG | + | chr7.2:77255825-77255844 | None:intergenic | 55.0% | |
| TATGGGCTCCAGCCTCAAAG+TGG | + | chr7.2:77256116-77256135 | None:intergenic | 55.0% | |
| AAGGTCCGGGGTTCGAACCC+CGG | - | chr7.2:77253902-77253921 | MS.gene43114:intron | 65.0% | |
| GGTGGCCGGGGTTCGAACCC+CGG | + | chr7.2:77253910-77253929 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 77251481 | 77256239 | 77251481 | ID=MS.gene43114 |
| chr7.2 | mRNA | 77251481 | 77256239 | 77251481 | ID=MS.gene43114.t1;Parent=MS.gene43114 |
| chr7.2 | exon | 77256234 | 77256239 | 77256234 | ID=MS.gene43114.t1.exon1;Parent=MS.gene43114.t1 |
| chr7.2 | CDS | 77256234 | 77256239 | 77256234 | ID=cds.MS.gene43114.t1;Parent=MS.gene43114.t1 |
| chr7.2 | exon | 77256059 | 77256128 | 77256059 | ID=MS.gene43114.t1.exon2;Parent=MS.gene43114.t1 |
| chr7.2 | CDS | 77256059 | 77256128 | 77256059 | ID=cds.MS.gene43114.t1;Parent=MS.gene43114.t1 |
| chr7.2 | exon | 77254197 | 77255059 | 77254197 | ID=MS.gene43114.t1.exon3;Parent=MS.gene43114.t1 |
| chr7.2 | CDS | 77254197 | 77255059 | 77254197 | ID=cds.MS.gene43114.t1;Parent=MS.gene43114.t1 |
| chr7.2 | exon | 77252476 | 77252665 | 77252476 | ID=MS.gene43114.t1.exon4;Parent=MS.gene43114.t1 |
| chr7.2 | CDS | 77252476 | 77252665 | 77252476 | ID=cds.MS.gene43114.t1;Parent=MS.gene43114.t1 |
| chr7.2 | exon | 77251481 | 77251500 | 77251481 | ID=MS.gene43114.t1.exon5;Parent=MS.gene43114.t1 |
| chr7.2 | CDS | 77251481 | 77251500 | 77251481 | ID=cds.MS.gene43114.t1;Parent=MS.gene43114.t1 |
| Gene Sequence |
| Protein sequence |
