Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43220.t1 | XP_013457854.1 | 96.3 | 271 | 4 | 3 | 40 | 307 | 40 | 307 | 8.80E-137 | 496.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43220.t1 | Q86A88 | 51.9 | 81 | 36 | 2 | 220 | 300 | 12 | 89 | 1.9e-15 | 84.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43220.t1 | A0A072V1C9 | 96.3 | 271 | 4 | 3 | 40 | 307 | 40 | 307 | 6.4e-137 | 496.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049419 | MS.gene43220 | -0.824444 | 8.04E-54 | -1.69E-46 |
| MS.gene049983 | MS.gene43220 | 0.815887 | 7.34E-52 | -1.69E-46 |
| MS.gene050105 | MS.gene43220 | 0.810663 | 1.03E-50 | -1.69E-46 |
| MS.gene051122 | MS.gene43220 | 0.835894 | 1.29E-56 | -1.69E-46 |
| MS.gene060851 | MS.gene43220 | 0.80667 | 7.35E-50 | -1.69E-46 |
| MS.gene060852 | MS.gene43220 | 0.807878 | 4.08E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43220.t1 | MTR_4g107350 | 96.774 | 310 | 4 | 3 | 1 | 307 | 1 | 307 | 0.0 | 606 |
| MS.gene43220.t1 | MTR_4g114060 | 65.934 | 91 | 30 | 1 | 216 | 306 | 154 | 243 | 3.82e-39 | 138 |
| MS.gene43220.t1 | MTR_8g104900 | 62.626 | 99 | 34 | 2 | 211 | 307 | 34 | 131 | 3.18e-37 | 129 |
| MS.gene43220.t1 | MTR_1g031880 | 61.458 | 96 | 34 | 2 | 214 | 307 | 51 | 145 | 8.45e-32 | 116 |
| MS.gene43220.t1 | MTR_4g120150 | 52.439 | 82 | 36 | 2 | 220 | 301 | 51 | 129 | 9.26e-21 | 86.7 |
| MS.gene43220.t1 | MTR_2g101850 | 46.067 | 89 | 46 | 2 | 213 | 300 | 2 | 89 | 4.05e-20 | 83.6 |
| MS.gene43220.t1 | MTR_8g464690 | 50.633 | 79 | 38 | 1 | 222 | 300 | 12 | 89 | 7.78e-18 | 77.8 |
| MS.gene43220.t1 | MTR_6g087770 | 44.444 | 81 | 44 | 1 | 222 | 302 | 12 | 91 | 3.64e-17 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43220.t1 | AT5G20110 | 67.778 | 90 | 28 | 1 | 217 | 306 | 118 | 206 | 2.17e-39 | 137 |
| MS.gene43220.t1 | AT1G23220 | 53.763 | 93 | 41 | 2 | 216 | 307 | 36 | 127 | 3.21e-27 | 103 |
| MS.gene43220.t1 | AT1G52245 | 46.154 | 91 | 47 | 2 | 213 | 302 | 2 | 91 | 7.19e-19 | 80.5 |
| MS.gene43220.t1 | AT4G15930 | 47.727 | 88 | 41 | 3 | 216 | 302 | 40 | 123 | 8.93e-19 | 80.9 |
| MS.gene43220.t1 | AT3G16120 | 47.126 | 87 | 45 | 1 | 216 | 302 | 6 | 91 | 9.64e-19 | 80.1 |
| MS.gene43220.t1 | AT3G16120 | 47.126 | 87 | 45 | 1 | 216 | 302 | 6 | 91 | 9.64e-19 | 80.1 |
| MS.gene43220.t1 | AT4G27360 | 46.591 | 88 | 46 | 1 | 216 | 303 | 6 | 92 | 4.12e-16 | 73.2 |
Find 69 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAGGTGGTTTCTCTTTA+AGG | 0.077615 | 8.4:-19558610 | None:intergenic |
| GGTGATTTCTTTGCAATTAA+TGG | 0.142399 | 8.4:+19558836 | MS.gene43220:CDS |
| ATCAAATCTTGGTTTGGTTT+TGG | 0.235547 | 8.4:-19558350 | None:intergenic |
| TGTATTGTGGGGACTAGTTT+TGG | 0.238004 | 8.4:+19559673 | MS.gene43220:CDS |
| GTACAGCAGTCTTAAATATA+AGG | 0.257882 | 8.4:-19559759 | None:intergenic |
| GGAGAGAGTTTCTGTTTCTA+TGG | 0.258173 | 8.4:+19558763 | MS.gene43220:CDS |
| TTGAGGTGGTTTCTCTTTAA+GGG | 0.259606 | 8.4:-19558609 | None:intergenic |
| TGTGGGTCAATGATTGATTT+AGG | 0.289700 | 8.4:+19558815 | MS.gene43220:CDS |
| GAGGGATAATGCTAGGGTTT+TGG | 0.302500 | 8.4:-19558954 | None:intergenic |
| ATTGGAAAAGTGGAAACTTC+AGG | 0.346164 | 8.4:+19558646 | MS.gene43220:CDS |
| TGTTTGGTGGGTGTTGTTGT+TGG | 0.366216 | 8.4:-19558525 | None:intergenic |
| CAAACGTGAGTCAACATGTT+TGG | 0.366632 | 8.4:-19558456 | None:intergenic |
| GTTTGGTGGGTGTTGTTGTT+GGG | 0.396439 | 8.4:-19558524 | None:intergenic |
| GAAATATTGCAGGAATTTGA+TGG | 0.396694 | 8.4:+19559628 | MS.gene43220:intron |
| AAAGGTGGTTGAGGATGTTA+AGG | 0.409778 | 8.4:+19558688 | MS.gene43220:CDS |
| AAAAGAAGGTGGTGATGTTA+AGG | 0.409989 | 8.4:+19558742 | MS.gene43220:CDS |
| CAGGAATTTGATGGGGTGTA+TGG | 0.421928 | 8.4:+19559637 | MS.gene43220:intron |
| GCTTGAATCAAATCTTGGTT+TGG | 0.433215 | 8.4:-19558356 | None:intergenic |
| TAGTAGCTTGAATCAAATCT+TGG | 0.435025 | 8.4:-19558361 | None:intergenic |
| GTTGTTGAAGAATGAGAAAA+AGG | 0.446134 | 8.4:+19558670 | MS.gene43220:CDS |
| TTTGGTTTGAGAATGTTGTT+TGG | 0.446853 | 8.4:-19558438 | None:intergenic |
| CCGGCGAAACACGGCACCAC+CGG | 0.446993 | 8.4:+19558235 | MS.gene43220:CDS |
| TTGGAAAAGTGGAAACTTCA+GGG | 0.459465 | 8.4:+19558647 | MS.gene43220:CDS |
| AGGATTTCTATATTTCTCAA+TGG | 0.472685 | 8.4:+19559720 | MS.gene43220:CDS |
| CCTTCTTGAGGGATAATGCT+AGG | 0.479039 | 8.4:-19558961 | None:intergenic |
| TTTGTGACCCATTCTGTTGG+AGG | 0.480594 | 8.4:+19559700 | MS.gene43220:CDS |
| TGGTGCCGTGTTTCGCCGGC+GGG | 0.480858 | 8.4:-19558231 | None:intergenic |
| ACAGCATGGATCTGCATAAA+CGG | 0.483580 | 8.4:-19558887 | None:intergenic |
| TATGAATTATACCTTCTTGA+GGG | 0.489208 | 8.4:-19558972 | None:intergenic |
| TTTGGTTGCTTAGCTAAAGC+AGG | 0.490079 | 8.4:-19558272 | None:intergenic |
| TCATTTGTGACCCATTCTGT+TGG | 0.494391 | 8.4:+19559697 | MS.gene43220:CDS |
| CTTCTTGAGGGATAATGCTA+GGG | 0.494928 | 8.4:-19558960 | None:intergenic |
| CCGGTGGTGCCGTGTTTCGC+CGG | 0.500458 | 8.4:-19558235 | None:intergenic |
| CCAGCATGGCACTGTATTGT+GGG | 0.504817 | 8.4:+19559661 | MS.gene43220:CDS |
| TAGAAATCCTCCAACAGAAT+GGG | 0.505407 | 8.4:-19559707 | None:intergenic |
| GAGAGAGTTTCTGTTTCTAT+GGG | 0.506756 | 8.4:+19558764 | MS.gene43220:CDS |
| TGCTTAGCTAAAGCAGGAGG+TGG | 0.509007 | 8.4:-19558266 | None:intergenic |
| CCTAAGTTAAGACTTTGAAA+AGG | 0.512023 | 8.4:-19558404 | None:intergenic |
| CTAGTTCAGAATTGGAAAAG+TGG | 0.512540 | 8.4:+19558636 | MS.gene43220:CDS |
| CATGTTGACTCACGTTTGCA+AGG | 0.516215 | 8.4:+19558461 | MS.gene43220:CDS |
| TGTTTCGCCGGCGGGAAGAA+CGG | 0.519846 | 8.4:-19558223 | None:intergenic |
| AAATATTGCAGGAATTTGAT+GGG | 0.521597 | 8.4:+19559629 | MS.gene43220:intron |
| GGTAGAAGAAAATCGTTATG+TGG | 0.525728 | 8.4:+19558797 | MS.gene43220:CDS |
| CCCACAATACAGTGCCATGC+TGG | 0.538117 | 8.4:-19559661 | None:intergenic |
| ATATGAATTATACCTTCTTG+AGG | 0.545883 | 8.4:-19558973 | None:intergenic |
| GTTTCTATGGGTCAAAGTGG+TGG | 0.547379 | 8.4:+19558776 | MS.gene43220:CDS |
| ATAGAAATCCTCCAACAGAA+TGG | 0.547634 | 8.4:-19559708 | None:intergenic |
| AAATATAGCTGAGGTTGTCA+TGG | 0.552151 | 8.4:-19558489 | None:intergenic |
| GCAGGAGGTGGATTTGTCTC+CGG | 0.556923 | 8.4:-19558254 | None:intergenic |
| TTCTTCCCGCCGGCGAAACA+CGG | 0.557264 | 8.4:+19558226 | MS.gene43220:CDS |
| GTGGTGCCGTGTTTCGCCGG+CGG | 0.566812 | 8.4:-19558232 | None:intergenic |
| TTCTAGCACAATCAACAGCA+TGG | 0.575374 | 8.4:-19558901 | None:intergenic |
| GTCAAGAAAAGTAATTGTTG+TGG | 0.576899 | 8.4:+19558718 | MS.gene43220:CDS |
| ACCAGCATGGCACTGTATTG+TGG | 0.577524 | 8.4:+19559660 | MS.gene43220:CDS |
| CCTAGCATTATCCCTCAAGA+AGG | 0.579726 | 8.4:+19558961 | MS.gene43220:CDS |
| TGAAGGTGATGATGAGAAGA+TGG | 0.583761 | 8.4:-19558315 | None:intergenic |
| GTAGAAGAAAATCGTTATGT+GGG | 0.594942 | 8.4:+19558798 | MS.gene43220:CDS |
| TCTGTTTCTATGGGTCAAAG+TGG | 0.611585 | 8.4:+19558773 | MS.gene43220:CDS |
| TGATGAATCAAATATAGCTG+AGG | 0.614815 | 8.4:-19558498 | None:intergenic |
| GGAGGTGGATTTGTCTCCGG+TGG | 0.623941 | 8.4:-19558251 | None:intergenic |
| TGGCACACCGTTCTTCCCGC+CGG | 0.632791 | 8.4:+19558216 | MS.gene43220:CDS |
| GGTTGCTTAGCTAAAGCAGG+AGG | 0.641795 | 8.4:-19558269 | None:intergenic |
| CAGCATGGCACTGTATTGTG+GGG | 0.649093 | 8.4:+19559662 | MS.gene43220:CDS |
| TGGAAAAGTGGAAACTTCAG+GGG | 0.656471 | 8.4:+19558648 | MS.gene43220:CDS |
| TTTGGATAGTGAGAAGGTGA+AGG | 0.666862 | 8.4:-19558332 | None:intergenic |
| AGGTGATGATGAGAAGATGG+TGG | 0.684245 | 8.4:-19558312 | None:intergenic |
| AATATTGCAGGAATTTGATG+GGG | 0.687792 | 8.4:+19559630 | MS.gene43220:intron |
| GCATGGATCTGCATAAACGG+TGG | 0.717762 | 8.4:-19558884 | None:intergenic |
| ATGGGGTGTATGGACCAGCA+TGG | 0.734479 | 8.4:+19559647 | MS.gene43220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAAATCATTATAAACG+TGG | + | chr8.4:19559503-19559522 | MS.gene43220:intron | 20.0% |
| !! | TTTGCATTAGGAATAATTTA+GGG | + | chr8.4:19559532-19559551 | MS.gene43220:intron | 20.0% |
| !!! | AGTTTTGAATGAATTGATTA+TGG | + | chr8.4:19559091-19559110 | MS.gene43220:intron | 20.0% |
| !!! | ATGTAGACAAAATTTGATTT+GGG | - | chr8.4:19559319-19559338 | None:intergenic | 20.0% |
| !!! | CGTTTATAATGATTTTCTTT+AGG | - | chr8.4:19559503-19559522 | None:intergenic | 20.0% |
| !!! | TCAAATCATTTTGCTAAATT+TGG | - | chr8.4:19559429-19559448 | None:intergenic | 20.0% |
| !!! | TGAATATTTTAGTGAATGAT+TGG | + | chr8.4:19559581-19559600 | MS.gene43220:intron | 20.0% |
| !!! | TTATAATGATTTTCTTTAGG+AGG | - | chr8.4:19559500-19559519 | None:intergenic | 20.0% |
| !!! | TTTTGCATTAGGAATAATTT+AGG | + | chr8.4:19559531-19559550 | MS.gene43220:intron | 20.0% |
| ! | AAATATTGCAGGAATTTGAT+GGG | + | chr8.4:19559629-19559648 | MS.gene43220:intron | 25.0% |
| ! | AGGATTTCTATATTTCTCAA+TGG | + | chr8.4:19559720-19559739 | MS.gene43220:CDS | 25.0% |
| ! | ATATGAATTATACCTTCTTG+AGG | - | chr8.4:19558976-19558995 | None:intergenic | 25.0% |
| ! | CATGTAGACAAAATTTGATT+TGG | - | chr8.4:19559320-19559339 | None:intergenic | 25.0% |
| ! | TATGAATTATACCTTCTTGA+GGG | - | chr8.4:19558975-19558994 | None:intergenic | 25.0% |
| !! | TCATTTTGCTAAATTTGGAT+CGG | - | chr8.4:19559424-19559443 | None:intergenic | 25.0% |
| !! | TTAGTACTGTGATTTTTGTT+TGG | - | chr8.4:19558544-19558563 | None:intergenic | 25.0% |
| !!! | ACACTATCTTTTTCATGATT+TGG | - | chr8.4:19558569-19558588 | None:intergenic | 25.0% |
| !!! | ACTTACATTCAAGTCATTTT+GGG | - | chr8.4:19559343-19559362 | None:intergenic | 25.0% |
| !!! | TAGAAAAGCTTTTGATAGTA+TGG | + | chr8.4:19558919-19558938 | MS.gene43220:CDS | 25.0% |
| AATATTGCAGGAATTTGATG+GGG | + | chr8.4:19559630-19559649 | MS.gene43220:intron | 30.0% | |
| GAAATATTGCAGGAATTTGA+TGG | + | chr8.4:19559628-19559647 | MS.gene43220:intron | 30.0% | |
| GGTGATTTCTTTGCAATTAA+TGG | + | chr8.4:19558836-19558855 | MS.gene43220:CDS | 30.0% | |
| GTAATTGTTGTGGAAAAAGA+AGG | + | chr8.4:19558728-19558747 | MS.gene43220:CDS | 30.0% | |
| GTACAGCAGTCTTAAATATA+AGG | - | chr8.4:19559762-19559781 | None:intergenic | 30.0% | |
| GTAGAAGAAAATCGTTATGT+GGG | + | chr8.4:19558798-19558817 | MS.gene43220:CDS | 30.0% | |
| GTCAAGAAAAGTAATTGTTG+TGG | + | chr8.4:19558718-19558737 | MS.gene43220:CDS | 30.0% | |
| GTGTATGTTTGAATTTAGTG+TGG | + | chr8.4:19559361-19559380 | MS.gene43220:intron | 30.0% | |
| GTTGTTGAAGAATGAGAAAA+AGG | + | chr8.4:19558670-19558689 | MS.gene43220:CDS | 30.0% | |
| TAGTAGCTTGAATCAAATCT+TGG | - | chr8.4:19558364-19558383 | None:intergenic | 30.0% | |
| TCAAAAACCTAGTTCAGAAT+TGG | + | chr8.4:19558628-19558647 | MS.gene43220:CDS | 30.0% | |
| TGATGAATCAAATATAGCTG+AGG | - | chr8.4:19558501-19558520 | None:intergenic | 30.0% | |
| TGCAATTAATGGAGCAAAAA+TGG | + | chr8.4:19558847-19558866 | MS.gene43220:CDS | 30.0% | |
| ! | AATTCTGAACTAGGTTTTTG+AGG | - | chr8.4:19558629-19558648 | None:intergenic | 30.0% |
| ! | ATTTTGCTAAATTTGGATCG+GGG | - | chr8.4:19559422-19559441 | None:intergenic | 30.0% |
| ! | CACTTACATTCAAGTCATTT+TGG | - | chr8.4:19559344-19559363 | None:intergenic | 30.0% |
| ! | CATTTTGCTAAATTTGGATC+GGG | - | chr8.4:19559423-19559442 | None:intergenic | 30.0% |
| ! | CCTAAGTTAAGACTTTGAAA+AGG | - | chr8.4:19558407-19558426 | None:intergenic | 30.0% |
| ! | CCTTTTCAAAGTCTTAACTT+AGG | + | chr8.4:19558404-19558423 | MS.gene43220:CDS | 30.0% |
| ! | GAATGATTGGTCAATGAATT+CGG | + | chr8.4:19559594-19559613 | MS.gene43220:intron | 30.0% |
| ! | GTTAGACTTGACACTTTTAT+CGG | + | chr8.4:19559169-19559188 | MS.gene43220:intron | 30.0% |
| ! | TTAGACTTGACACTTTTATC+GGG | + | chr8.4:19559170-19559189 | MS.gene43220:intron | 30.0% |
| !! | TACTGTGATTTTTGTTTGGT+GGG | - | chr8.4:19558540-19558559 | None:intergenic | 30.0% |
| !! | TTTGGTTTGAGAATGTTGTT+TGG | - | chr8.4:19558441-19558460 | None:intergenic | 30.0% |
| !!! | ATCAAATCTTGGTTTGGTTT+TGG | - | chr8.4:19558353-19558372 | None:intergenic | 30.0% |
| !!! | GTGTTTTTTTGCATTCTAAG+AGG | + | chr8.4:19558585-19558604 | MS.gene43220:CDS | 30.0% |
| AAATATAGCTGAGGTTGTCA+TGG | - | chr8.4:19558492-19558511 | None:intergenic | 35.0% | |
| ACATACGCTAAAGTCATCTA+AGG | - | chr8.4:19559243-19559262 | None:intergenic | 35.0% | |
| ATAGAAATCCTCCAACAGAA+TGG | - | chr8.4:19559711-19559730 | None:intergenic | 35.0% | |
| ATCTAAGGACCACTAAAACT+CGG | - | chr8.4:19559228-19559247 | None:intergenic | 35.0% | |
| ATTGGAAAAGTGGAAACTTC+AGG | + | chr8.4:19558646-19558665 | MS.gene43220:CDS | 35.0% | |
| ATTGTTGTGGAAAAAGAAGG+TGG | + | chr8.4:19558731-19558750 | MS.gene43220:CDS | 35.0% | |
| CCTAGTTCAATTGACAATGT+CGG | + | chr8.4:19559142-19559161 | MS.gene43220:intron | 35.0% | |
| CTAGTTCAGAATTGGAAAAG+TGG | + | chr8.4:19558636-19558655 | MS.gene43220:CDS | 35.0% | |
| GCTTGAATCAAATCTTGGTT+TGG | - | chr8.4:19558359-19558378 | None:intergenic | 35.0% | |
| GGTAGAAGAAAATCGTTATG+TGG | + | chr8.4:19558797-19558816 | MS.gene43220:CDS | 35.0% | |
| GTTGAAGAATGAGAAAAAGG+TGG | + | chr8.4:19558673-19558692 | MS.gene43220:CDS | 35.0% | |
| TAGAAATCCTCCAACAGAAT+GGG | - | chr8.4:19559710-19559729 | None:intergenic | 35.0% | |
| TATGTTGACGAGAGAATGAT+TGG | + | chr8.4:19559258-19559277 | MS.gene43220:intron | 35.0% | |
| TTGAGGTGGTTTCTCTTTAA+GGG | - | chr8.4:19558612-19558631 | None:intergenic | 35.0% | |
| TTGGAAAAGTGGAAACTTCA+GGG | + | chr8.4:19558647-19558666 | MS.gene43220:CDS | 35.0% | |
| ! | AAAAGAAGGTGGTGATGTTA+AGG | + | chr8.4:19558742-19558761 | MS.gene43220:CDS | 35.0% |
| ! | CACTTTTCCAATTCTGAACT+AGG | - | chr8.4:19558638-19558657 | None:intergenic | 35.0% |
| ! | TGTGGGTCAATGATTGATTT+AGG | + | chr8.4:19558815-19558834 | MS.gene43220:CDS | 35.0% |
| ! | TTTGAGGTGGTTTCTCTTTA+AGG | - | chr8.4:19558613-19558632 | None:intergenic | 35.0% |
| !! | ACGTGGTTTACTTTTGCATT+AGG | + | chr8.4:19559520-19559539 | MS.gene43220:intron | 35.0% |
| !! | GAGAGAGTTTCTGTTTCTAT+GGG | + | chr8.4:19558764-19558783 | MS.gene43220:CDS | 35.0% |
| !! | GTACTGTGATTTTTGTTTGG+TGG | - | chr8.4:19558541-19558560 | None:intergenic | 35.0% |
| !!! | TTTGGTTTTGGATAGTGAGA+AGG | - | chr8.4:19558341-19558360 | None:intergenic | 35.0% |
| AAAGGTGGTTGAGGATGTTA+AGG | + | chr8.4:19558688-19558707 | MS.gene43220:CDS | 40.0% | |
| ACAGCATGGATCTGCATAAA+CGG | - | chr8.4:19558890-19558909 | None:intergenic | 40.0% | |
| CAAACGTGAGTCAACATGTT+TGG | - | chr8.4:19558459-19558478 | None:intergenic | 40.0% | |
| CCGACATTGTCAATTGAACT+AGG | - | chr8.4:19559145-19559164 | None:intergenic | 40.0% | |
| CTTCTTGAGGGATAATGCTA+GGG | - | chr8.4:19558963-19558982 | None:intergenic | 40.0% | |
| GAATGAGAAAAAGGTGGTTG+AGG | + | chr8.4:19558679-19558698 | MS.gene43220:CDS | 40.0% | |
| GTCAATGAATTCGGTTGTGT+GGG | + | chr8.4:19559603-19559622 | MS.gene43220:intron | 40.0% | |
| TCATTTGTGACCCATTCTGT+TGG | + | chr8.4:19559697-19559716 | MS.gene43220:CDS | 40.0% | |
| TGGAAAAGTGGAAACTTCAG+GGG | + | chr8.4:19558648-19558667 | MS.gene43220:CDS | 40.0% | |
| TTCTAGCACAATCAACAGCA+TGG | - | chr8.4:19558904-19558923 | None:intergenic | 40.0% | |
| TTTGGATAGTGAGAAGGTGA+AGG | - | chr8.4:19558335-19558354 | None:intergenic | 40.0% | |
| TTTGGTTGCTTAGCTAAAGC+AGG | - | chr8.4:19558275-19558294 | None:intergenic | 40.0% | |
| ! | ATGGTGGTTTTTGTAGTGGT+GGG | - | chr8.4:19558299-19558318 | None:intergenic | 40.0% |
| ! | TGAAGGTGATGATGAGAAGA+TGG | - | chr8.4:19558318-19558337 | None:intergenic | 40.0% |
| ! | TGTGTGGGTTGAAATATTGC+AGG | + | chr8.4:19559618-19559637 | MS.gene43220:intron | 40.0% |
| ! | TTTTATCGGGTTCGAACCAA+GGG | + | chr8.4:19559183-19559202 | MS.gene43220:intron | 40.0% |
| !! | GAAGATGGTGGTTTTTGTAG+TGG | - | chr8.4:19558303-19558322 | None:intergenic | 40.0% |
| !! | GGAGAGAGTTTCTGTTTCTA+TGG | + | chr8.4:19558763-19558782 | MS.gene43220:CDS | 40.0% |
| !! | TCTGAACTAGGTTTTTGAGG+TGG | - | chr8.4:19558626-19558645 | None:intergenic | 40.0% |
| !! | TCTGTTTCTATGGGTCAAAG+TGG | + | chr8.4:19558773-19558792 | MS.gene43220:CDS | 40.0% |
| !!! | GTTTTTGTAGTGGTGGGTTT+TGG | - | chr8.4:19558293-19558312 | None:intergenic | 40.0% |
| !!! | TGTATTGTGGGGACTAGTTT+TGG | + | chr8.4:19559673-19559692 | MS.gene43220:CDS | 40.0% |
| CAGGAATTTGATGGGGTGTA+TGG | + | chr8.4:19559637-19559656 | MS.gene43220:intron | 45.0% | |
| CCTAGCATTATCCCTCAAGA+AGG | + | chr8.4:19558961-19558980 | MS.gene43220:CDS | 45.0% | |
| CCTTCTTGAGGGATAATGCT+AGG | - | chr8.4:19558964-19558983 | None:intergenic | 45.0% | |
| GGTCAATGAATTCGGTTGTG+TGG | + | chr8.4:19559602-19559621 | MS.gene43220:intron | 45.0% | |
| GTTTCTATGGGTCAAAGTGG+TGG | + | chr8.4:19558776-19558795 | MS.gene43220:CDS | 45.0% | |
| TTTGTGACCCATTCTGTTGG+AGG | + | chr8.4:19559700-19559719 | MS.gene43220:CDS | 45.0% | |
| ! | AGGTGATGATGAGAAGATGG+TGG | - | chr8.4:19558315-19558334 | None:intergenic | 45.0% |
| ! | CTTTTATCGGGTTCGAACCA+AGG | + | chr8.4:19559182-19559201 | MS.gene43220:intron | 45.0% |
| ! | GAGGGATAATGCTAGGGTTT+TGG | - | chr8.4:19558957-19558976 | None:intergenic | 45.0% |
| !! | CATGTTGACTCACGTTTGCA+AGG | + | chr8.4:19558461-19558480 | MS.gene43220:CDS | 45.0% |
| !! | GATGGTGGTTTTTGTAGTGG+TGG | - | chr8.4:19558300-19558319 | None:intergenic | 45.0% |
| !! | GTTTGGTGGGTGTTGTTGTT+GGG | - | chr8.4:19558527-19558546 | None:intergenic | 45.0% |
| !! | TAGCTGTGTCCGAGTTTTAG+TGG | + | chr8.4:19559216-19559235 | MS.gene43220:intron | 45.0% |
| !! | TGTTTGGTGGGTGTTGTTGT+TGG | - | chr8.4:19558528-19558547 | None:intergenic | 45.0% |
| ACCAGCATGGCACTGTATTG+TGG | + | chr8.4:19559660-19559679 | MS.gene43220:CDS | 50.0% | |
| CAGCATGGCACTGTATTGTG+GGG | + | chr8.4:19559662-19559681 | MS.gene43220:CDS | 50.0% | |
| CCAGCATGGCACTGTATTGT+GGG | + | chr8.4:19559661-19559680 | MS.gene43220:CDS | 50.0% | |
| GCATGGATCTGCATAAACGG+TGG | - | chr8.4:19558887-19558906 | None:intergenic | 50.0% | |
| GGTTGCTTAGCTAAAGCAGG+AGG | - | chr8.4:19558272-19558291 | None:intergenic | 50.0% | |
| TGCTTAGCTAAAGCAGGAGG+TGG | - | chr8.4:19558269-19558288 | None:intergenic | 50.0% | |
| ATCGGGTTCGAACCAAGGGT+AGG | + | chr8.4:19559187-19559206 | MS.gene43220:intron | 55.0% | |
| ATGGGGTGTATGGACCAGCA+TGG | + | chr8.4:19559647-19559666 | MS.gene43220:CDS | 55.0% | |
| CAGCTACAAGACCCTACCCT+TGG | - | chr8.4:19559202-19559221 | None:intergenic | 55.0% | |
| CCCACAATACAGTGCCATGC+TGG | - | chr8.4:19559664-19559683 | None:intergenic | 55.0% | |
| TCGGGTTCGAACCAAGGGTA+GGG | + | chr8.4:19559188-19559207 | MS.gene43220:intron | 55.0% | |
| ! | GCAGGAGGTGGATTTGTCTC+CGG | - | chr8.4:19558257-19558276 | None:intergenic | 55.0% |
| TGTTTCGCCGGCGGGAAGAA+CGG | - | chr8.4:19558226-19558245 | None:intergenic | 60.0% | |
| TTCTTCCCGCCGGCGAAACA+CGG | + | chr8.4:19558226-19558245 | MS.gene43220:CDS | 60.0% | |
| ! | GGAGGTGGATTTGTCTCCGG+TGG | - | chr8.4:19558254-19558273 | None:intergenic | 60.0% |
| TGGCACACCGTTCTTCCCGC+CGG | + | chr8.4:19558216-19558235 | MS.gene43220:CDS | 65.0% | |
| CCGGCGAAACACGGCACCAC+CGG | + | chr8.4:19558235-19558254 | MS.gene43220:CDS | 70.0% | |
| !! | CCGGTGGTGCCGTGTTTCGC+CGG | - | chr8.4:19558238-19558257 | None:intergenic | 70.0% |
| !! | GTGGTGCCGTGTTTCGCCGG+CGG | - | chr8.4:19558235-19558254 | None:intergenic | 70.0% |
| !! | TGGTGCCGTGTTTCGCCGGC+GGG | - | chr8.4:19558234-19558253 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 19558215 | 19559795 | 19558215 | ID=MS.gene43220 |
| chr8.4 | mRNA | 19558215 | 19559795 | 19558215 | ID=MS.gene43220.t1;Parent=MS.gene43220 |
| chr8.4 | exon | 19558215 | 19558982 | 19558215 | ID=MS.gene43220.t1.exon1;Parent=MS.gene43220.t1 |
| chr8.4 | CDS | 19558215 | 19558982 | 19558215 | ID=cds.MS.gene43220.t1;Parent=MS.gene43220.t1 |
| chr8.4 | exon | 19559640 | 19559795 | 19559640 | ID=MS.gene43220.t1.exon2;Parent=MS.gene43220.t1 |
| chr8.4 | CDS | 19559640 | 19559795 | 19559640 | ID=cds.MS.gene43220.t1;Parent=MS.gene43220.t1 |
| Gene Sequence |
| Protein sequence |
