Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43274.t1 | XP_024638701.1 | 91.6 | 214 | 4 | 3 | 1 | 200 | 1 | 214 | 1.10E-95 | 359.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43274.t1 | Q9SB04 | 70.0 | 150 | 35 | 2 | 23 | 162 | 25 | 174 | 2.3e-49 | 196.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43274.t1 | A0A396ID94 | 91.6 | 214 | 4 | 3 | 1 | 200 | 1 | 214 | 7.9e-96 | 359.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene43274.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43274 | MS.gene051416 | PPI |
| MS.gene43274 | MS.gene065401 | PPI |
| MS.gene43274 | MS.gene029745 | PPI |
| MS.gene43274 | MS.gene47429 | PPI |
| MS.gene43274 | MS.gene065402 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43274.t1 | MTR_4g106590 | 91.163 | 215 | 4 | 4 | 1 | 200 | 1 | 215 | 5.35e-132 | 369 |
| MS.gene43274.t1 | MTR_3g078613 | 68.571 | 210 | 46 | 5 | 1 | 200 | 1 | 200 | 3.74e-89 | 260 |
| MS.gene43274.t1 | MTR_3g078613 | 68.246 | 211 | 46 | 6 | 1 | 200 | 1 | 201 | 2.40e-87 | 256 |
| MS.gene43274.t1 | MTR_5g036480 | 65.734 | 143 | 36 | 2 | 22 | 151 | 15 | 157 | 4.81e-55 | 175 |
| MS.gene43274.t1 | MTR_1g049100 | 64.286 | 140 | 39 | 2 | 18 | 146 | 3 | 142 | 3.68e-54 | 171 |
| MS.gene43274.t1 | MTR_7g490310 | 51.235 | 162 | 61 | 3 | 18 | 161 | 4 | 165 | 3.47e-49 | 160 |
| MS.gene43274.t1 | MTR_8g038620 | 51.205 | 166 | 62 | 3 | 18 | 165 | 4 | 168 | 4.53e-48 | 155 |
| MS.gene43274.t1 | MTR_3g093860 | 53.030 | 132 | 49 | 3 | 24 | 143 | 19 | 149 | 3.23e-40 | 134 |
| MS.gene43274.t1 | MTR_3g015490 | 45.509 | 167 | 62 | 4 | 21 | 165 | 2 | 161 | 1.91e-37 | 127 |
| MS.gene43274.t1 | MTR_3g088630 | 46.309 | 149 | 52 | 4 | 22 | 143 | 21 | 168 | 3.04e-36 | 127 |
| MS.gene43274.t1 | MTR_6g007460 | 37.374 | 198 | 62 | 3 | 13 | 148 | 1 | 198 | 1.86e-31 | 114 |
| MS.gene43274.t1 | MTR_4g051330 | 50.000 | 74 | 37 | 0 | 92 | 165 | 77 | 150 | 2.33e-18 | 78.2 |
| MS.gene43274.t1 | MTR_3g092780 | 27.451 | 102 | 74 | 0 | 69 | 170 | 102 | 203 | 5.82e-13 | 67.0 |
| MS.gene43274.t1 | MTR_3g092780 | 27.451 | 102 | 74 | 0 | 69 | 170 | 102 | 203 | 6.67e-13 | 67.0 |
| MS.gene43274.t1 | MTR_3g092780 | 34.667 | 75 | 49 | 0 | 69 | 143 | 102 | 176 | 1.77e-12 | 65.9 |
| MS.gene43274.t1 | MTR_8g024260 | 34.568 | 81 | 53 | 0 | 66 | 146 | 79 | 159 | 1.77e-12 | 65.9 |
| MS.gene43274.t1 | MTR_3g092780 | 34.667 | 75 | 49 | 0 | 69 | 143 | 102 | 176 | 1.91e-12 | 65.5 |
| MS.gene43274.t1 | MTR_7g118260 | 29.825 | 114 | 74 | 2 | 69 | 179 | 60 | 170 | 1.25e-11 | 63.2 |
| MS.gene43274.t1 | MTR_1g067110 | 36.000 | 75 | 48 | 0 | 69 | 143 | 131 | 205 | 2.43e-11 | 62.4 |
| MS.gene43274.t1 | MTR_1g067110 | 36.000 | 75 | 48 | 0 | 69 | 143 | 131 | 205 | 2.56e-11 | 62.4 |
| MS.gene43274.t1 | MTR_7g118260 | 26.214 | 103 | 76 | 0 | 69 | 171 | 60 | 162 | 8.25e-11 | 60.8 |
| MS.gene43274.t1 | MTR_4g061360 | 29.231 | 130 | 74 | 2 | 23 | 143 | 89 | 209 | 9.67e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43274.t1 | AT3G48100 | 68.387 | 155 | 39 | 2 | 23 | 167 | 25 | 179 | 6.65e-67 | 203 |
| MS.gene43274.t1 | AT5G62920 | 68.421 | 152 | 39 | 1 | 23 | 165 | 25 | 176 | 3.25e-64 | 196 |
| MS.gene43274.t1 | AT1G74890 | 66.892 | 148 | 37 | 3 | 22 | 157 | 17 | 164 | 5.46e-60 | 186 |
| MS.gene43274.t1 | AT1G59940 | 54.271 | 199 | 72 | 4 | 13 | 193 | 23 | 220 | 2.29e-59 | 186 |
| MS.gene43274.t1 | AT1G19050 | 59.281 | 167 | 46 | 4 | 3 | 154 | 2 | 161 | 6.47e-59 | 184 |
| MS.gene43274.t1 | AT1G10470 | 67.143 | 140 | 37 | 1 | 13 | 143 | 10 | 149 | 2.98e-58 | 183 |
| MS.gene43274.t1 | AT1G59940 | 54.271 | 199 | 72 | 4 | 13 | 193 | 115 | 312 | 5.12e-58 | 185 |
| MS.gene43274.t1 | AT1G10470 | 67.143 | 140 | 37 | 1 | 13 | 143 | 24 | 163 | 6.31e-58 | 183 |
| MS.gene43274.t1 | AT3G57040 | 54.667 | 150 | 49 | 3 | 18 | 148 | 4 | 153 | 3.18e-47 | 155 |
| MS.gene43274.t1 | AT3G57040 | 54.667 | 150 | 49 | 3 | 18 | 148 | 4 | 153 | 3.18e-47 | 155 |
| MS.gene43274.t1 | AT2G41310 | 55.556 | 144 | 47 | 2 | 21 | 147 | 7 | 150 | 5.74e-47 | 154 |
| MS.gene43274.t1 | AT2G40670 | 55.224 | 134 | 48 | 2 | 22 | 143 | 28 | 161 | 3.84e-45 | 147 |
| MS.gene43274.t1 | AT3G56380 | 55.303 | 132 | 49 | 2 | 22 | 143 | 19 | 150 | 1.87e-44 | 145 |
| MS.gene43274.t1 | AT2G40670 | 54.815 | 135 | 48 | 3 | 22 | 143 | 28 | 162 | 2.46e-43 | 143 |
| MS.gene43274.t1 | AT3G56380 | 54.887 | 133 | 49 | 3 | 22 | 143 | 19 | 151 | 1.06e-42 | 140 |
| MS.gene43274.t1 | AT1G10470 | 67.692 | 65 | 20 | 1 | 91 | 154 | 35 | 99 | 4.08e-22 | 89.0 |
| MS.gene43274.t1 | AT2G07440 | 64.286 | 56 | 20 | 0 | 92 | 147 | 9 | 64 | 1.88e-16 | 72.8 |
| MS.gene43274.t1 | AT5G24470 | 33.333 | 78 | 52 | 0 | 69 | 146 | 96 | 173 | 1.17e-12 | 66.2 |
| MS.gene43274.t1 | AT5G60100 | 34.667 | 75 | 49 | 0 | 69 | 143 | 110 | 184 | 2.39e-11 | 62.4 |
| MS.gene43274.t1 | AT5G60100 | 34.667 | 75 | 49 | 0 | 69 | 143 | 110 | 184 | 2.39e-11 | 62.4 |
| MS.gene43274.t1 | AT5G60100 | 34.667 | 75 | 49 | 0 | 69 | 143 | 110 | 184 | 2.39e-11 | 62.4 |
| MS.gene43274.t1 | AT5G60100 | 34.667 | 75 | 49 | 0 | 69 | 143 | 110 | 184 | 3.23e-11 | 62.0 |
| MS.gene43274.t1 | AT5G60100 | 34.667 | 75 | 49 | 0 | 69 | 143 | 110 | 184 | 3.29e-11 | 62.0 |
| MS.gene43274.t1 | AT5G60100 | 34.667 | 75 | 49 | 0 | 69 | 143 | 110 | 184 | 3.29e-11 | 62.0 |
| MS.gene43274.t1 | AT5G60100 | 34.667 | 75 | 49 | 0 | 69 | 143 | 110 | 184 | 3.29e-11 | 62.0 |
| MS.gene43274.t1 | AT1G67710 | 29.677 | 155 | 85 | 6 | 13 | 155 | 1 | 143 | 5.18e-11 | 61.2 |
| MS.gene43274.t1 | AT2G46790 | 30.667 | 75 | 52 | 0 | 69 | 143 | 83 | 157 | 9.13e-11 | 60.5 |
Find 35 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCATGATGAAATCTTTC+AGG | 0.203021 | 8.4:+20289242 | None:intergenic |
| TTCACTAATTTGCAGGTGTT+TGG | 0.354372 | 8.4:-20289320 | MS.gene43274:intron |
| TTGATGGAGGAATCACCTTC+AGG | 0.429557 | 8.4:-20290884 | MS.gene43274:CDS |
| ATGACGGATTATTCCATGCC+TGG | 0.447268 | 8.4:-20290477 | MS.gene43274:CDS |
| TATTCCATGCCTGGGATGAC+AGG | 0.450141 | 8.4:-20290468 | MS.gene43274:CDS |
| GAGGAATCACCTTCAGGTGC+AGG | 0.470142 | 8.4:-20290878 | MS.gene43274:CDS |
| CTTACATCTGACAATTTGAC+TGG | 0.476820 | 8.4:+20289268 | None:intergenic |
| GATGGAGAGAACAGTGATGT+TGG | 0.500241 | 8.4:-20290627 | MS.gene43274:CDS |
| CAGTTTGTTATGGCTGCCGC+CGG | 0.507838 | 8.4:-20290926 | None:intergenic |
| GAAGGTTAATTTGATAATGA+CGG | 0.519870 | 8.4:-20290493 | MS.gene43274:CDS |
| ACTAATTTGCAGGTGTTTGG+AGG | 0.520826 | 8.4:-20289317 | MS.gene43274:intron |
| ATTTGCAGGTGTTTGGAGGA+AGG | 0.521653 | 8.4:-20289313 | MS.gene43274:intron |
| AATTCATATCCTGTCATCCC+AGG | 0.536780 | 8.4:+20290459 | None:intergenic |
| GATAATGTTGATGGCGAAAG+TGG | 0.540401 | 8.4:+20289091 | None:intergenic |
| TGAATTACTCAAGAAAATCA+AGG | 0.543151 | 8.4:-20290442 | MS.gene43274:intron |
| TGCAATTCCCCTGCACCTGA+AGG | 0.564770 | 8.4:+20290869 | None:intergenic |
| TGACGGATTATTCCATGCCT+GGG | 0.567665 | 8.4:-20290476 | MS.gene43274:CDS |
| AGGAATCACCTTCAGGTGCA+GGG | 0.570190 | 8.4:-20290877 | MS.gene43274:CDS |
| ATATCCTGTCATCCCAGGCA+TGG | 0.578908 | 8.4:+20290464 | None:intergenic |
| TCAGACGACATGATCACCAC+TGG | 0.582337 | 8.4:+20290254 | None:intergenic |
| ATTCCTCCATCAAATTCGAC+CGG | 0.585814 | 8.4:+20290894 | None:intergenic |
| GTTATGGTGGCAGGGTGTGA+AGG | 0.590843 | 8.4:-20290511 | MS.gene43274:intron |
| CTGAAAGATTTCATCATGAG+AGG | 0.595036 | 8.4:-20289241 | MS.gene43274:CDS |
| CAGGTGTTTGGAGGAAGGAG+CGG | 0.597585 | 8.4:-20289308 | MS.gene43274:CDS |
| CATCATGAGAGGTGAAGTGA+AGG | 0.602332 | 8.4:-20289230 | MS.gene43274:CDS |
| GGATCACATGAATGACGCAT+TGG | 0.604562 | 8.4:+20289133 | None:intergenic |
| ATTCGACCGGAAAATCTCGC+CGG | 0.617787 | 8.4:+20290907 | None:intergenic |
| GAGAATGTAGTTGATAGAGA+TGG | 0.621435 | 8.4:+20289157 | None:intergenic |
| GTGTTTGGAGGAAGGAGCGG+AGG | 0.624937 | 8.4:-20289305 | MS.gene43274:CDS |
| TTTCCGGTCGAATTTGATGG+AGG | 0.631772 | 8.4:-20290897 | MS.gene43274:CDS |
| GGAATCACCTTCAGGTGCAG+GGG | 0.635571 | 8.4:-20290876 | MS.gene43274:CDS |
| CGACCGGAAAATCTCGCCGG+CGG | 0.669618 | 8.4:+20290910 | None:intergenic |
| ATGAGAGGTGAAGTGAAGGA+TGG | 0.680662 | 8.4:-20289226 | MS.gene43274:CDS |
| AGTGGTGAGAACACTGACGA+TGG | 0.682583 | 8.4:+20289109 | None:intergenic |
| GGTGAGAACACTGACGATGG+CGG | 0.683927 | 8.4:+20289112 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAAGAAACTAATAAA+AGG | - | chr8.4:20290404-20290423 | MS.gene43274:intron | 10.0% |
| !!! | TTAGTTTCTTTTTATTTTTT+TGG | + | chr8.4:20290400-20290419 | None:intergenic | 10.0% |
| !! | AAACTAATAAAAGGAATATT+TGG | - | chr8.4:20290413-20290432 | MS.gene43274:intron | 15.0% |
| !! | AATTATCAACAATTCAAATA+AGG | + | chr8.4:20289598-20289617 | None:intergenic | 15.0% |
| !! | ATTACAATTACATTAATAGA+AGG | + | chr8.4:20290463-20290482 | None:intergenic | 15.0% |
| !!! | TTTTTGAAATTTTATATTGG+AGG | - | chr8.4:20289639-20289658 | MS.gene43274:intron | 15.0% |
| !! | AAATAAAACTATTAAGAAGC+AGG | + | chr8.4:20290647-20290666 | None:intergenic | 20.0% |
| !! | AAATCAAGGTGATTAATTAT+TGG | - | chr8.4:20289558-20289577 | MS.gene43274:intron | 20.0% |
| !! | AATGAATTTATTTCCTGATT+AGG | + | chr8.4:20290041-20290060 | None:intergenic | 20.0% |
| !! | ACAGTTTCTTAATTCTAATT+TGG | - | chr8.4:20289972-20289991 | MS.gene43274:intron | 20.0% |
| !! | ATTAGAATTAAGAAACTGTA+TGG | + | chr8.4:20289971-20289990 | None:intergenic | 20.0% |
| !!! | AATCAGTTTATTTTTTTGAC+TGG | - | chr8.4:20290272-20290291 | MS.gene43274:CDS | 20.0% |
| !!! | AATGTTTTTTGTTTCAGTTA+CGG | - | chr8.4:20289295-20289314 | MS.gene43274:CDS | 20.0% |
| !!! | ACAAATGTGCATATTATTTT+GGG | + | chr8.4:20290515-20290534 | None:intergenic | 20.0% |
| !!! | TACAAATGTGCATATTATTT+TGG | + | chr8.4:20290516-20290535 | None:intergenic | 20.0% |
| !!! | TTGTTTTCATATGATTGATA+AGG | + | chr8.4:20290338-20290357 | None:intergenic | 20.0% |
| !!! | TTTTATTTTCACTAATTTGC+AGG | - | chr8.4:20290659-20290678 | MS.gene43274:CDS | 20.0% |
| ! | AATTAAGAAACTGTATGGAA+TGG | + | chr8.4:20289966-20289985 | None:intergenic | 25.0% |
| ! | ATATGCACATTTGTATTGTA+TGG | - | chr8.4:20290521-20290540 | MS.gene43274:intron | 25.0% |
| ! | ATGTAAGCAAATTATGTTTC+TGG | - | chr8.4:20289387-20289406 | MS.gene43274:intron | 25.0% |
| ! | TCTGGATTATTAACTTTGTT+TGG | - | chr8.4:20289405-20289424 | MS.gene43274:intron | 25.0% |
| ! | TGAATTACTCAAGAAAATCA+AGG | - | chr8.4:20289544-20289563 | MS.gene43274:intron | 25.0% |
| ! | TTCTAGTGTGATTTAAACTT+TGG | - | chr8.4:20289813-20289832 | MS.gene43274:intron | 25.0% |
| ! | TTTGTTTGGATGTTGTAATT+TGG | - | chr8.4:20289419-20289438 | MS.gene43274:intron | 25.0% |
| !! | ATATTTGGCAAGAATCTTTT+AGG | - | chr8.4:20290428-20290447 | MS.gene43274:intron | 25.0% |
| !! | TGAAATTTTATATTGGAGGA+AGG | - | chr8.4:20289643-20289662 | MS.gene43274:intron | 25.0% |
| !!! | GAAGGTTAATTTGATAATGA+CGG | - | chr8.4:20289493-20289512 | MS.gene43274:intron | 25.0% |
| !!! | GTTGTTGTTTTGTTATGTTA+TGG | - | chr8.4:20289459-20289478 | MS.gene43274:intron | 25.0% |
| !!! | TCACAATCTAGATTTTTTAG+AGG | + | chr8.4:20290920-20290939 | None:intergenic | 25.0% |
| !!! | TTTTTAGAGGATAATGTTGA+TGG | + | chr8.4:20290907-20290926 | None:intergenic | 25.0% |
| AGTGTGATTTAAACTTTGGA+TGG | - | chr8.4:20289817-20289836 | MS.gene43274:intron | 30.0% | |
| CAGGAAATAAATTCATTGTG+TGG | - | chr8.4:20290044-20290063 | MS.gene43274:intron | 30.0% | |
| CTGCTGAAATTAATACAAAC+AGG | + | chr8.4:20289688-20289707 | None:intergenic | 30.0% | |
| CTGTTTGTATTAATTTCAGC+AGG | - | chr8.4:20289686-20289705 | MS.gene43274:intron | 30.0% | |
| GAAACACAAATTTCAGAGAA+GGG | + | chr8.4:20290137-20290156 | None:intergenic | 30.0% | |
| GAATTTATTTCCTGATTAGG+TGG | + | chr8.4:20290038-20290057 | None:intergenic | 30.0% | |
| TGAAACACAAATTTCAGAGA+AGG | + | chr8.4:20290138-20290157 | None:intergenic | 30.0% | |
| TGTATGGAATGGAATTCAAT+AGG | + | chr8.4:20289955-20289974 | None:intergenic | 30.0% | |
| TTGAAGATTTCTTCATGCAA+AGG | - | chr8.4:20289192-20289211 | MS.gene43274:CDS | 30.0% | |
| ! | AATTTTATATTGGAGGAAGG+TGG | - | chr8.4:20289646-20289665 | MS.gene43274:intron | 30.0% |
| ! | TATGGTGTTCTTTGTTTCTT+TGG | - | chr8.4:20290309-20290328 | MS.gene43274:intron | 30.0% |
| !! | GTTGTTTTGTTATGTTATGG+TGG | - | chr8.4:20289462-20289481 | MS.gene43274:intron | 30.0% |
| !!! | ATGTTTTGACTCGAATTGAT+AGG | - | chr8.4:20289757-20289776 | MS.gene43274:intron | 30.0% |
| CAGATTGGATGCATATTTAC+CGG | + | chr8.4:20290015-20290034 | None:intergenic | 35.0% | |
| CCTGTTAAAACATGCGTATT+TGG | - | chr8.4:20289897-20289916 | MS.gene43274:intron | 35.0% | |
| CTCTCATGATGAAATCTTTC+AGG | + | chr8.4:20290747-20290766 | None:intergenic | 35.0% | |
| CTGAAAGATTTCATCATGAG+AGG | - | chr8.4:20290745-20290764 | MS.gene43274:intron | 35.0% | |
| CTGGAACTCGAAAAAGTTTA+TGG | - | chr8.4:20290291-20290310 | MS.gene43274:intron | 35.0% | |
| CTTACATCTGACAATTTGAC+TGG | + | chr8.4:20290721-20290740 | None:intergenic | 35.0% | |
| GAATTCAATAGGAGCTTAAC+TGG | + | chr8.4:20289944-20289963 | None:intergenic | 35.0% | |
| GGAATCTGAAGGACTTAATT+TGG | + | chr8.4:20290219-20290238 | None:intergenic | 35.0% | |
| GTTTAAATGTTGAAGCTCCA+TGG | - | chr8.4:20290100-20290119 | MS.gene43274:intron | 35.0% | |
| TTACGCCTCCATATCTATTT+GGG | + | chr8.4:20290072-20290091 | None:intergenic | 35.0% | |
| ! | GGTGTTTCTTTTAATCTCTC+CGG | - | chr8.4:20289993-20290012 | MS.gene43274:intron | 35.0% |
| ! | TGATTCGAGTTAAAAGAGCT+GGG | + | chr8.4:20290257-20290276 | None:intergenic | 35.0% |
| ! | TGTATTGTATGGAGTGCTTT+AGG | - | chr8.4:20290532-20290551 | MS.gene43274:intron | 35.0% |
| ! | TTCACTAATTTGCAGGTGTT+TGG | - | chr8.4:20290666-20290685 | MS.gene43274:CDS | 35.0% |
| ! | TTTGGCAAGAATCTTTTAGG+CGG | - | chr8.4:20290431-20290450 | MS.gene43274:intron | 35.0% |
| ! | TTTGTTATGTTATGGTGGCA+GGG | - | chr8.4:20289467-20289486 | MS.gene43274:intron | 35.0% |
| !! | GAGAATGTAGTTGATAGAGA+TGG | + | chr8.4:20290832-20290851 | None:intergenic | 35.0% |
| !! | GTTTTATTGAGGGAATCTGA+AGG | + | chr8.4:20290230-20290249 | None:intergenic | 35.0% |
| !! | TTTTGTTATGTTATGGTGGC+AGG | - | chr8.4:20289466-20289485 | MS.gene43274:intron | 35.0% |
| !!! | CCAAATACGCATGTTTTAAC+AGG | + | chr8.4:20289900-20289919 | None:intergenic | 35.0% |
| !!! | TGTTTTTAGAGAGATTCCAG+TGG | - | chr8.4:20289716-20289735 | MS.gene43274:intron | 35.0% |
| AATAGGAGCTTAACTGGATG+GGG | + | chr8.4:20289938-20289957 | None:intergenic | 40.0% | |
| AATTCATATCCTGTCATCCC+AGG | + | chr8.4:20289530-20289549 | None:intergenic | 40.0% | |
| ATTCCTCCATCAAATTCGAC+CGG | + | chr8.4:20289095-20289114 | None:intergenic | 40.0% | |
| CAATAGGAGCTTAACTGGAT+GGG | + | chr8.4:20289939-20289958 | None:intergenic | 40.0% | |
| CTTACGCCTCCATATCTATT+TGG | + | chr8.4:20290073-20290092 | None:intergenic | 40.0% | |
| GTGTGGATCCCAAATAGATA+TGG | - | chr8.4:20290061-20290080 | MS.gene43274:intron | 40.0% | |
| TCAATAGGAGCTTAACTGGA+TGG | + | chr8.4:20289940-20289959 | None:intergenic | 40.0% | |
| TGGATCCCAAATAGATATGG+AGG | - | chr8.4:20290064-20290083 | MS.gene43274:intron | 40.0% | |
| TGTCGAAAGTTGTTCTTGCT+AGG | + | chr8.4:20290602-20290621 | None:intergenic | 40.0% | |
| ! | AAGAAGAGCTCTCCAGTTTT+TGG | - | chr8.4:20289331-20289350 | MS.gene43274:intron | 40.0% |
| ! | AATAGATATGGAGGCGTAAG+TGG | - | chr8.4:20290073-20290092 | MS.gene43274:intron | 40.0% |
| ! | ACTAATTTGCAGGTGTTTGG+AGG | - | chr8.4:20290669-20290688 | MS.gene43274:CDS | 40.0% |
| ! | AGAAGAGCTCTCCAGTTTTT+GGG | - | chr8.4:20289332-20289351 | MS.gene43274:intron | 40.0% |
| ! | CTGATTCGAGTTAAAAGAGC+TGG | + | chr8.4:20290258-20290277 | None:intergenic | 40.0% |
| ! | GATTTTCCGGTCGAATTTGA+TGG | - | chr8.4:20289086-20289105 | MS.gene43274:CDS | 40.0% |
| !! | AGCTGGGTTGTGTTTTATTG+AGG | + | chr8.4:20290241-20290260 | None:intergenic | 40.0% |
| !! | GATAATGTTGATGGCGAAAG+TGG | + | chr8.4:20290898-20290917 | None:intergenic | 40.0% |
| !! | GCTGGGTTGTGTTTTATTGA+GGG | + | chr8.4:20290240-20290259 | None:intergenic | 40.0% |
| ATCCAATCTGCCACCTAATC+AGG | - | chr8.4:20290025-20290044 | MS.gene43274:intron | 45.0% | |
| ATGAGAGGTGAAGTGAAGGA+TGG | - | chr8.4:20290760-20290779 | MS.gene43274:intron | 45.0% | |
| ATTTGCAGGTGTTTGGAGGA+AGG | - | chr8.4:20290673-20290692 | MS.gene43274:CDS | 45.0% | |
| CATCATGAGAGGTGAAGTGA+AGG | - | chr8.4:20290756-20290775 | MS.gene43274:intron | 45.0% | |
| CTCCATCCAATCCCAAAAAC+TGG | + | chr8.4:20289346-20289365 | None:intergenic | 45.0% | |
| GATGGAGAGAACAGTGATGT+TGG | - | chr8.4:20289359-20289378 | MS.gene43274:intron | 45.0% | |
| GGATCACATGAATGACGCAT+TGG | + | chr8.4:20290856-20290875 | None:intergenic | 45.0% | |
| TTCCTGATTAGGTGGCAGAT+TGG | + | chr8.4:20290030-20290049 | None:intergenic | 45.0% | |
| TTGATGGAGGAATCACCTTC+AGG | - | chr8.4:20289102-20289121 | MS.gene43274:CDS | 45.0% | |
| TTTCCGGTCGAATTTGATGG+AGG | - | chr8.4:20289089-20289108 | MS.gene43274:CDS | 45.0% | |
| !! | ATGACGGATTATTCCATGCC+TGG | - | chr8.4:20289509-20289528 | MS.gene43274:intron | 45.0% |
| !! | TGACGGATTATTCCATGCCT+GGG | - | chr8.4:20289510-20289529 | MS.gene43274:intron | 45.0% |
| !!! | AGCTCTCCAGTTTTTGGGAT+TGG | - | chr8.4:20289337-20289356 | MS.gene43274:intron | 45.0% |
| !!! | CTCCAGTTTTTGGGATTGGA+TGG | - | chr8.4:20289341-20289360 | MS.gene43274:intron | 45.0% |
| !!! | TTTTTTTTGAAATTTTATAT+TGG | - | chr8.4:20289636-20289655 | MS.gene43274:intron | 5.0% |
| AGGAATCACCTTCAGGTGCA+GGG | - | chr8.4:20289109-20289128 | MS.gene43274:CDS | 50.0% | |
| AGTGGTGAGAACACTGACGA+TGG | + | chr8.4:20290880-20290899 | None:intergenic | 50.0% | |
| ATATCCTGTCATCCCAGGCA+TGG | + | chr8.4:20289525-20289544 | None:intergenic | 50.0% | |
| ATTCGACCGGAAAATCTCGC+CGG | + | chr8.4:20289082-20289101 | None:intergenic | 50.0% | |
| GAAGGGCTAACACAGATCCA+TGG | + | chr8.4:20290120-20290139 | None:intergenic | 50.0% | |
| TATTCCATGCCTGGGATGAC+AGG | - | chr8.4:20289518-20289537 | MS.gene43274:intron | 50.0% | |
| TCAGACGACATGATCACCAC+TGG | + | chr8.4:20289735-20289754 | None:intergenic | 50.0% | |
| CAGGTGTTTGGAGGAAGGAG+CGG | - | chr8.4:20290678-20290697 | MS.gene43274:intron | 55.0% | |
| GAGGAATCACCTTCAGGTGC+AGG | - | chr8.4:20289108-20289127 | MS.gene43274:CDS | 55.0% | |
| GGAATCACCTTCAGGTGCAG+GGG | - | chr8.4:20289110-20289129 | MS.gene43274:CDS | 55.0% | |
| GGTGAGAACACTGACGATGG+CGG | + | chr8.4:20290877-20290896 | None:intergenic | 55.0% | |
| GTTATGGTGGCAGGGTGTGA+AGG | - | chr8.4:20289475-20289494 | MS.gene43274:intron | 55.0% | |
| TGCAATTCCCCTGCACCTGA+AGG | + | chr8.4:20289120-20289139 | None:intergenic | 55.0% | |
| GTGTTTGGAGGAAGGAGCGG+AGG | - | chr8.4:20290681-20290700 | MS.gene43274:intron | 60.0% | |
| CGACCGGAAAATCTCGCCGG+CGG | + | chr8.4:20289079-20289098 | None:intergenic | 65.0% | |
| ! | CTGCCGCCGGCGAGATTTTC+CGG | - | chr8.4:20289073-20289092 | MS.gene43274:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 20289069 | 20290939 | 20289069 | ID=MS.gene43274 |
| chr8.4 | mRNA | 20289069 | 20290939 | 20289069 | ID=MS.gene43274.t1;Parent=MS.gene43274 |
| chr8.4 | exon | 20290822 | 20290939 | 20290822 | ID=MS.gene43274.t1.exon1;Parent=MS.gene43274.t1 |
| chr8.4 | CDS | 20290822 | 20290939 | 20290822 | ID=cds.MS.gene43274.t1;Parent=MS.gene43274.t1 |
| chr8.4 | exon | 20290620 | 20290696 | 20290620 | ID=MS.gene43274.t1.exon2;Parent=MS.gene43274.t1 |
| chr8.4 | CDS | 20290620 | 20290696 | 20290620 | ID=cds.MS.gene43274.t1;Parent=MS.gene43274.t1 |
| chr8.4 | exon | 20290443 | 20290520 | 20290443 | ID=MS.gene43274.t1.exon3;Parent=MS.gene43274.t1 |
| chr8.4 | CDS | 20290443 | 20290520 | 20290443 | ID=cds.MS.gene43274.t1;Parent=MS.gene43274.t1 |
| chr8.4 | exon | 20290230 | 20290300 | 20290230 | ID=MS.gene43274.t1.exon4;Parent=MS.gene43274.t1 |
| chr8.4 | CDS | 20290230 | 20290300 | 20290230 | ID=cds.MS.gene43274.t1;Parent=MS.gene43274.t1 |
| chr8.4 | exon | 20289069 | 20289327 | 20289069 | ID=MS.gene43274.t1.exon5;Parent=MS.gene43274.t1 |
| chr8.4 | CDS | 20289069 | 20289327 | 20289069 | ID=cds.MS.gene43274.t1;Parent=MS.gene43274.t1 |
| Gene Sequence |
| Protein sequence |
