Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43347.t1 | XP_013467265.1 | 94.8 | 577 | 20 | 2 | 1 | 570 | 8 | 581 | 2.1e-309 | 1070.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43347.t1 | Q5XQC7 | 67.0 | 572 | 175 | 4 | 1 | 559 | 9 | 579 | 8.6e-219 | 761.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43347.t1 | A0A072VGY2 | 94.8 | 577 | 20 | 2 | 1 | 570 | 8 | 581 | 1.5e-309 | 1070.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43347 | MS.gene000424 | PPI |
| MS.gene43347 | MS.gene70112 | PPI |
| MS.gene43347 | MS.gene49772 | PPI |
| MS.gene43347 | MS.gene030511 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43347.t1 | MTR_1g048160 | 94.801 | 577 | 20 | 2 | 1 | 570 | 8 | 581 | 0.0 | 1114 |
| MS.gene43347.t1 | MTR_7g114130 | 87.348 | 577 | 65 | 2 | 1 | 569 | 8 | 584 | 0.0 | 1040 |
| MS.gene43347.t1 | MTR_8g096190 | 59.162 | 573 | 216 | 7 | 1 | 558 | 8 | 577 | 0.0 | 679 |
| MS.gene43347.t1 | MTR_8g096190 | 58.165 | 545 | 210 | 7 | 1 | 530 | 8 | 549 | 0.0 | 633 |
| MS.gene43347.t1 | MTR_7g114100 | 71.591 | 440 | 81 | 6 | 141 | 570 | 13 | 418 | 0.0 | 610 |
| MS.gene43347.t1 | MTR_8g096190 | 56.977 | 516 | 204 | 7 | 1 | 501 | 8 | 520 | 0.0 | 585 |
| MS.gene43347.t1 | MTR_7g033100 | 31.600 | 250 | 128 | 7 | 323 | 549 | 107 | 336 | 1.87e-22 | 100 |
| MS.gene43347.t1 | MTR_7g033100 | 32.143 | 252 | 124 | 9 | 323 | 549 | 107 | 336 | 2.83e-22 | 99.8 |
| MS.gene43347.t1 | MTR_6g092020 | 29.195 | 298 | 164 | 11 | 283 | 556 | 33 | 307 | 1.89e-20 | 94.0 |
| MS.gene43347.t1 | MTR_2g063857 | 29.032 | 279 | 141 | 9 | 323 | 566 | 95 | 351 | 5.66e-20 | 92.4 |
| MS.gene43347.t1 | MTR_2g063857 | 29.032 | 279 | 141 | 9 | 323 | 566 | 95 | 351 | 6.39e-20 | 92.8 |
| MS.gene43347.t1 | MTR_2g063907 | 30.000 | 260 | 133 | 9 | 323 | 556 | 81 | 317 | 7.40e-20 | 92.4 |
| MS.gene43347.t1 | MTR_3g086520 | 30.952 | 252 | 127 | 10 | 323 | 549 | 125 | 354 | 8.04e-20 | 92.8 |
| MS.gene43347.t1 | MTR_2g063843 | 28.302 | 318 | 171 | 12 | 283 | 566 | 46 | 340 | 8.68e-20 | 92.0 |
| MS.gene43347.t1 | MTR_3g086520 | 30.952 | 252 | 127 | 10 | 323 | 549 | 125 | 354 | 8.88e-20 | 92.8 |
| MS.gene43347.t1 | MTR_3g086520 | 30.952 | 252 | 127 | 10 | 323 | 549 | 122 | 351 | 8.96e-20 | 92.8 |
| MS.gene43347.t1 | MTR_6g092100 | 29.242 | 277 | 141 | 9 | 323 | 566 | 29 | 283 | 1.07e-19 | 90.5 |
| MS.gene43347.t1 | MTR_3g075530 | 29.730 | 259 | 138 | 8 | 317 | 551 | 88 | 326 | 1.64e-19 | 91.7 |
| MS.gene43347.t1 | MTR_8g089670 | 30.000 | 250 | 132 | 7 | 323 | 549 | 132 | 361 | 1.72e-19 | 92.0 |
| MS.gene43347.t1 | MTR_8g447220 | 29.412 | 255 | 133 | 8 | 323 | 552 | 80 | 312 | 7.45e-19 | 88.2 |
| MS.gene43347.t1 | MTR_8g447220 | 29.528 | 254 | 132 | 8 | 323 | 551 | 80 | 311 | 1.21e-18 | 89.0 |
| MS.gene43347.t1 | MTR_3g096520 | 30.147 | 272 | 139 | 11 | 308 | 549 | 87 | 337 | 2.41e-18 | 88.2 |
| MS.gene43347.t1 | MTR_3g096520 | 30.147 | 272 | 139 | 11 | 308 | 549 | 87 | 337 | 2.45e-18 | 88.2 |
| MS.gene43347.t1 | MTR_3g096520 | 30.147 | 272 | 139 | 11 | 308 | 549 | 104 | 354 | 2.60e-18 | 88.2 |
| MS.gene43347.t1 | MTR_6g021730 | 27.389 | 314 | 170 | 10 | 274 | 549 | 63 | 356 | 4.64e-18 | 87.8 |
| MS.gene43347.t1 | MTR_7g081170 | 28.205 | 156 | 93 | 4 | 352 | 497 | 85 | 231 | 3.46e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43347.t1 | AT1G08860 | 66.958 | 572 | 175 | 4 | 1 | 559 | 9 | 579 | 0.0 | 793 |
| MS.gene43347.t1 | AT5G61910 | 60.584 | 548 | 205 | 4 | 21 | 559 | 799 | 1344 | 0.0 | 692 |
| MS.gene43347.t1 | AT5G61900 | 60.108 | 554 | 210 | 4 | 15 | 559 | 25 | 576 | 0.0 | 689 |
| MS.gene43347.t1 | AT5G61900 | 60.108 | 554 | 210 | 4 | 15 | 559 | 25 | 576 | 0.0 | 689 |
| MS.gene43347.t1 | AT5G07300 | 57.040 | 554 | 225 | 4 | 15 | 556 | 24 | 576 | 0.0 | 658 |
| MS.gene43347.t1 | AT1G67800 | 30.189 | 265 | 142 | 7 | 323 | 564 | 113 | 357 | 3.43e-22 | 100 |
| MS.gene43347.t1 | AT1G67800 | 30.189 | 265 | 142 | 7 | 323 | 564 | 93 | 337 | 3.48e-22 | 99.8 |
| MS.gene43347.t1 | AT1G67800 | 30.189 | 265 | 142 | 7 | 323 | 564 | 93 | 337 | 3.48e-22 | 99.8 |
| MS.gene43347.t1 | AT1G67800 | 30.189 | 265 | 142 | 7 | 323 | 564 | 93 | 337 | 3.48e-22 | 99.8 |
| MS.gene43347.t1 | AT1G67800 | 30.189 | 265 | 142 | 7 | 323 | 564 | 93 | 337 | 3.48e-22 | 99.8 |
| MS.gene43347.t1 | AT1G67800 | 30.952 | 252 | 131 | 7 | 323 | 551 | 113 | 344 | 5.32e-22 | 99.0 |
| MS.gene43347.t1 | AT3G01650 | 31.600 | 250 | 128 | 7 | 323 | 549 | 156 | 385 | 1.43e-21 | 98.6 |
| MS.gene43347.t1 | AT3G01650 | 31.600 | 250 | 128 | 7 | 323 | 549 | 156 | 385 | 1.43e-21 | 98.6 |
| MS.gene43347.t1 | AT1G79380 | 29.348 | 276 | 146 | 10 | 308 | 554 | 58 | 313 | 5.35e-20 | 92.8 |
| MS.gene43347.t1 | AT5G63970 | 29.310 | 290 | 154 | 11 | 308 | 567 | 16 | 284 | 6.43e-20 | 92.0 |
| MS.gene43347.t1 | AT5G63970 | 29.310 | 290 | 154 | 11 | 308 | 567 | 16 | 284 | 6.43e-20 | 92.0 |
| MS.gene43347.t1 | AT5G14420 | 33.503 | 197 | 98 | 6 | 323 | 500 | 122 | 304 | 1.18e-19 | 92.4 |
| MS.gene43347.t1 | AT5G14420 | 33.503 | 197 | 98 | 6 | 323 | 500 | 122 | 304 | 1.18e-19 | 92.4 |
| MS.gene43347.t1 | AT5G14420 | 33.503 | 197 | 98 | 6 | 323 | 500 | 122 | 304 | 1.18e-19 | 92.4 |
| MS.gene43347.t1 | AT5G14420 | 33.503 | 197 | 98 | 6 | 323 | 500 | 122 | 304 | 1.18e-19 | 92.4 |
Find 126 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATCAGGACCGACTTTATT+TGG | 0.092335 | 1.4:+33175564 | MS.gene43347:CDS |
| CTCTGTTGTGCAAGCTCTTT+TGG | 0.131277 | 1.4:+33176395 | MS.gene43347:CDS |
| AAAATTTATGTAGGCTATTA+TGG | 0.137904 | 1.4:+33174968 | MS.gene43347:intron |
| GGAACTACCTGGTCAATTTC+TGG | 0.189717 | 1.4:+33176419 | MS.gene43347:CDS |
| AGACAAAGTGGTCTCCATTT+TGG | 0.193575 | 1.4:-33174064 | None:intergenic |
| CAGTTTCCTGCTTGGGGATT+TGG | 0.225046 | 1.4:+33175029 | MS.gene43347:CDS |
| TTGTTGGTTGTTGCAGATTC+AGG | 0.267952 | 1.4:-33171601 | None:intergenic |
| TGGATTTGAACTAAACTTCT+TGG | 0.283622 | 1.4:+33174633 | MS.gene43347:CDS |
| CCGTTATCGATTCTTATAGT+TGG | 0.331065 | 1.4:+33176000 | MS.gene43347:CDS |
| ATAACTTCAGTCTTGAAAAT+AGG | 0.338975 | 1.4:-33174025 | None:intergenic |
| TTACGCACTGTCACTCTATC+AGG | 0.344413 | 1.4:+33175549 | MS.gene43347:CDS |
| TGATAAGCAGTTTCCTGCTT+GGG | 0.349559 | 1.4:+33175022 | MS.gene43347:CDS |
| ACAACAATTTAAATCCAAAA+TGG | 0.352815 | 1.4:+33174050 | MS.gene43347:CDS |
| AGCATGTAACTTACTTGATC+TGG | 0.364428 | 1.4:+33172639 | MS.gene43347:CDS |
| TTGCATTACATCGATTTATC+TGG | 0.374898 | 1.4:+33174797 | MS.gene43347:CDS |
| TCCCTATGTGTTTAGGTTGT+AGG | 0.375125 | 1.4:+33175492 | MS.gene43347:intron |
| GGTTAAGCTCCTGCTTGGTT+TGG | 0.381608 | 1.4:-33173705 | None:intergenic |
| GATGGCAAATTGGAAGAATT+AGG | 0.387750 | 1.4:+33172845 | MS.gene43347:CDS |
| TGTCTTAATTTCCAGCAGTT+TGG | 0.391943 | 1.4:+33174082 | MS.gene43347:CDS |
| TGTGCTGCCATGTTGATAAC+TGG | 0.401228 | 1.4:-33175588 | None:intergenic |
| AATAGTTTACAAACCTTTGT+GGG | 0.404665 | 1.4:-33173104 | None:intergenic |
| TGTAGGAGTTGAAGGCATAA+TGG | 0.406763 | 1.4:+33175509 | MS.gene43347:CDS |
| TCTGAAGGGTCAACTCTTTG+TGG | 0.407921 | 1.4:+33174561 | MS.gene43347:CDS |
| TCTCATTGTTTCAATCTGAA+TGG | 0.408996 | 1.4:+33175077 | MS.gene43347:CDS |
| ATCGACGGCGTCATTGTTGT+TGG | 0.415859 | 1.4:-33171617 | None:intergenic |
| CAAGCAGGAGCTTAACCTTA+AGG | 0.422863 | 1.4:+33173711 | MS.gene43347:CDS |
| TCGATGTAATGCAAAGAATC+TGG | 0.423247 | 1.4:-33174788 | None:intergenic |
| TTGGTTGCGGTAGATTTCAC+TGG | 0.425129 | 1.4:+33174652 | MS.gene43347:CDS |
| GTTTAGGTTGTAGGAGTTGA+AGG | 0.425836 | 1.4:+33175501 | MS.gene43347:intron |
| AATCTGAATGGGAGTCCAAC+TGG | 0.426068 | 1.4:+33175089 | MS.gene43347:CDS |
| GAAATTTCAGAGTGATCCTA+TGG | 0.433621 | 1.4:+33172799 | MS.gene43347:intron |
| CTCATTGTTTCAATCTGAAT+GGG | 0.434117 | 1.4:+33175078 | MS.gene43347:CDS |
| TATATATTTCCAGCTTCAAA+TGG | 0.434818 | 1.4:+33174752 | MS.gene43347:intron |
| CAGATTGAAACAATGAGATA+TGG | 0.438182 | 1.4:-33175072 | None:intergenic |
| CTTACTTTGTACTTCTCTCA+TGG | 0.444065 | 1.4:-33176236 | None:intergenic |
| TTACTTTACTTCCAAACTGC+TGG | 0.447464 | 1.4:-33174093 | None:intergenic |
| TTTCCTGCTTGGGGATTTGG+AGG | 0.449938 | 1.4:+33175032 | MS.gene43347:CDS |
| GAATAGTTTACAAACCTTTG+TGG | 0.453878 | 1.4:-33173105 | None:intergenic |
| AACTGTCTCCTCAGCATGAA+TGG | 0.454232 | 1.4:-33173783 | None:intergenic |
| AAAGAAAGGAGATGGCAAAT+TGG | 0.459334 | 1.4:+33172835 | MS.gene43347:CDS |
| CTGAATGATCAAGAATTCCT+TGG | 0.460295 | 1.4:+33173383 | MS.gene43347:CDS |
| AGTGGCAATCATGTACTTAT+CGG | 0.460443 | 1.4:+33174243 | MS.gene43347:CDS |
| TTGTAAAATCTATTGAATAG+AGG | 0.461151 | 1.4:-33176496 | None:intergenic |
| ATGTAGGCTATTATGGAGGT+TGG | 0.461256 | 1.4:+33174975 | MS.gene43347:intron |
| TGTGGATCAATATTGTGAAA+AGG | 0.461879 | 1.4:+33174579 | MS.gene43347:CDS |
| CTGATAAGCAGTTTCCTGCT+TGG | 0.464590 | 1.4:+33175021 | MS.gene43347:CDS |
| TGTAAAATCTATTGAATAGA+GGG | 0.468725 | 1.4:-33176495 | None:intergenic |
| TTACTTTGTACTTCTCTCAT+GGG | 0.469535 | 1.4:-33176235 | None:intergenic |
| TATCTTCCGTTGCTCTCACT+TGG | 0.470928 | 1.4:+33173829 | MS.gene43347:CDS |
| CATAACGAACTGTTTGAATC+CGG | 0.472537 | 1.4:+33172880 | MS.gene43347:CDS |
| AATAGTAGTCAAATAAATCA+AGG | 0.473244 | 1.4:+33173752 | MS.gene43347:CDS |
| ACTCTTGATATCCTTAGAAA+AGG | 0.477739 | 1.4:-33173980 | None:intergenic |
| TTCTTCATTATAGGTTCTGA+AGG | 0.478669 | 1.4:+33174546 | MS.gene43347:intron |
| ACAATGAGATATGGTACCTC+CGG | 0.482045 | 1.4:-33175063 | None:intergenic |
| GAAGGCATAATGGAGGCTTA+TGG | 0.482688 | 1.4:+33175519 | MS.gene43347:CDS |
| GATTTCTTCTACACCGCTCA+AGG | 0.483038 | 1.4:+33171637 | MS.gene43347:CDS |
| CTTAAGGTTAAGCTCCTGCT+TGG | 0.492355 | 1.4:-33173710 | None:intergenic |
| TCGGTTAAATTCATACCAAA+AGG | 0.492733 | 1.4:+33174820 | MS.gene43347:CDS |
| TCTTGTCCACTGCGTGTGGA+TGG | 0.495928 | 1.4:-33174442 | None:intergenic |
| TATCAACATGGCAGCACAAA+TGG | 0.499511 | 1.4:+33175593 | MS.gene43347:CDS |
| GGCAGCACAAATGGCTGCAG+AGG | 0.501755 | 1.4:+33175602 | MS.gene43347:CDS |
| TTTGCATATACCACAGCCAT+AGG | 0.503237 | 1.4:-33172815 | None:intergenic |
| TGATCTGGACATTGCATCAA+AGG | 0.506204 | 1.4:+33172654 | MS.gene43347:CDS |
| TGCAAAGAATCTGGCTGTTG+AGG | 0.510911 | 1.4:-33174779 | None:intergenic |
| TCGATTCTTATAGTTGGTGT+TGG | 0.514251 | 1.4:+33176006 | MS.gene43347:CDS |
| GTGGCAATCATGTACTTATC+GGG | 0.514625 | 1.4:+33174244 | MS.gene43347:CDS |
| CAGGTACTGGATGCTGATAA+TGG | 0.515134 | 1.4:+33176154 | MS.gene43347:intron |
| GACATTGACACATCATATCA+TGG | 0.517697 | 1.4:+33173077 | MS.gene43347:CDS |
| TGAACTAAACTTCTTGGTTG+CGG | 0.519654 | 1.4:+33174639 | MS.gene43347:CDS |
| ATATCAAGAGTGGTTGAGAG+TGG | 0.522006 | 1.4:+33173992 | MS.gene43347:CDS |
| GATAAGCAGTTTCCTGCTTG+GGG | 0.534286 | 1.4:+33175023 | MS.gene43347:CDS |
| TAGTGCTGTTATATGATGAA+AGG | 0.540610 | 1.4:-33175626 | None:intergenic |
| AGTGCTGTTATATGATGAAA+GGG | 0.545112 | 1.4:-33175625 | None:intergenic |
| CTATGTATTGCTTATCATAA+CGG | 0.550933 | 1.4:+33175653 | MS.gene43347:CDS |
| TTTATTGACTACATATCTAG+TGG | 0.553134 | 1.4:+33174613 | MS.gene43347:CDS |
| AAGCGCTGATTTCAAGAGCA+TGG | 0.554254 | 1.4:+33176029 | MS.gene43347:CDS |
| CGAACTGTTTGAATCCGGAA+TGG | 0.558135 | 1.4:+33172885 | MS.gene43347:CDS |
| CAATGAGATATGGTACCTCC+GGG | 0.567172 | 1.4:-33175062 | None:intergenic |
| ATAGTAGTCAAATAAATCAA+GGG | 0.568639 | 1.4:+33173753 | MS.gene43347:CDS |
| CTTCTCTTGTCCACTGCGTG+TGG | 0.574689 | 1.4:-33174446 | None:intergenic |
| CACACGCAGTGGACAAGAGA+AGG | 0.575334 | 1.4:+33174447 | MS.gene43347:CDS |
| TTTCCTCCAAATCCCCAAGC+AGG | 0.575985 | 1.4:-33175035 | None:intergenic |
| GCTGTGGTATATGCAAAGAA+AGG | 0.576181 | 1.4:+33172821 | MS.gene43347:CDS |
| GCCATTGTTTACCAATGTCG+AGG | 0.577910 | 1.4:+33171666 | MS.gene43347:CDS |
| TGCTGGAAATTAAGACAAAG+TGG | 0.581538 | 1.4:-33174076 | None:intergenic |
| TATTGAATAGAGGGTGCATG+AGG | 0.582257 | 1.4:-33176486 | None:intergenic |
| TCAGAGTGATCCTATGGCTG+TGG | 0.582904 | 1.4:+33172805 | MS.gene43347:intron |
| TTTCTCACCTCAGAGCCAGT+TGG | 0.583666 | 1.4:-33175104 | None:intergenic |
| TACTTTGTACTTCTCTCATG+GGG | 0.583824 | 1.4:-33176234 | None:intergenic |
| GGCAATTACCATTCATGCTG+AGG | 0.588514 | 1.4:+33173775 | MS.gene43347:CDS |
| ACCTTAAGGCTTCAAAACAA+AGG | 0.593551 | 1.4:+33173725 | MS.gene43347:CDS |
| GGCTAGTTGCACTTTATCAG+AGG | 0.599539 | 1.4:+33173409 | MS.gene43347:CDS |
| GTATATGCAAAGAAAGGAGA+TGG | 0.599811 | 1.4:+33172827 | MS.gene43347:CDS |
| TCAAGAAACTATAGATGCTG+TGG | 0.600899 | 1.4:+33175960 | MS.gene43347:CDS |
| ATTACATCGATTTATCTGGT+CGG | 0.601030 | 1.4:+33174801 | MS.gene43347:CDS |
| AAGTGCAACTAGCCTCTCCA+AGG | 0.602063 | 1.4:-33173400 | None:intergenic |
| TCTTCATTATAGGTTCTGAA+GGG | 0.604452 | 1.4:+33174547 | MS.gene43347:intron |
| CCAACTATAAGAATCGATAA+CGG | 0.607575 | 1.4:-33176000 | None:intergenic |
| AGATTGTGACCAAACCAAGC+AGG | 0.609422 | 1.4:+33173696 | MS.gene43347:intron |
| TCAAGAGTGGTTGAGAGTGG+AGG | 0.610072 | 1.4:+33173995 | MS.gene43347:CDS |
| ATTTATGTAGGCTATTATGG+AGG | 0.610538 | 1.4:+33174971 | MS.gene43347:intron |
| TTAAGGCTTCAAAACAAAGG+AGG | 0.617378 | 1.4:+33173728 | MS.gene43347:CDS |
| AATCGTACATACCTCGACAT+TGG | 0.617770 | 1.4:-33171677 | None:intergenic |
| TAAGGCTTCAAAACAAAGGA+GGG | 0.618624 | 1.4:+33173729 | MS.gene43347:CDS |
| TGTTTCGATTTCAATAGCAG+TGG | 0.620835 | 1.4:+33174225 | MS.gene43347:CDS |
| TGAAGGATAGCTTACACAAG+TGG | 0.629629 | 1.4:-33172950 | None:intergenic |
| ACCTCGACATTGGTAAACAA+TGG | 0.630957 | 1.4:-33171667 | None:intergenic |
| ATATCATGGTGTTCCCACAA+AGG | 0.631966 | 1.4:+33173091 | MS.gene43347:CDS |
| ATAACTGGTCCAAATAAAGT+CGG | 0.636325 | 1.4:-33175573 | None:intergenic |
| GGATTTGGAGGAAAGATACC+CGG | 0.639302 | 1.4:+33175044 | MS.gene43347:CDS |
| GCAGCGAAAGAAGCAGTAGG+AGG | 0.639513 | 1.4:+33171571 | MS.gene43347:CDS |
| TAGTAGTCAAATAAATCAAG+GGG | 0.641244 | 1.4:+33173754 | MS.gene43347:CDS |
| GTCATGCCATCCACACGCAG+TGG | 0.642164 | 1.4:+33174436 | MS.gene43347:CDS |
| TGATCAAGAATTCCTTGGAG+AGG | 0.649527 | 1.4:+33173388 | MS.gene43347:CDS |
| AAAGCAGCGAAAGAAGCAGT+AGG | 0.650157 | 1.4:+33171568 | MS.gene43347:CDS |
| TGTTATCCAAGTGAGAGCAA+CGG | 0.656188 | 1.4:-33173835 | None:intergenic |
| AGGAGTTGAAGGCATAATGG+AGG | 0.658018 | 1.4:+33175512 | MS.gene43347:CDS |
| CAATGGCTGAAAACCTTGAG+CGG | 0.661576 | 1.4:-33171650 | None:intergenic |
| TGAGGGAAATGCGAAACGAG+TGG | 0.665560 | 1.4:-33176468 | None:intergenic |
| TGGGAGTCCAACTGGCTCTG+AGG | 0.666240 | 1.4:+33175097 | MS.gene43347:CDS |
| ATGAAAGCCAGAAATTGACC+AGG | 0.678628 | 1.4:-33176426 | None:intergenic |
| ATTGAATAGAGGGTGCATGA+GGG | 0.680710 | 1.4:-33176485 | None:intergenic |
| ATTTGGACCAGTTATCAACA+TGG | 0.682852 | 1.4:+33175581 | MS.gene43347:CDS |
| AGCGGTGTAGAAGAAATCGA+CGG | 0.704432 | 1.4:-33171632 | None:intergenic |
| CGCTGATTTCAAGAGCATGG+AGG | 0.715202 | 1.4:+33176032 | MS.gene43347:CDS |
| TTTGGAGGAAAGATACCCGG+AGG | 0.768868 | 1.4:+33175047 | MS.gene43347:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAATAAAATAAAATTTATGT+AGG | + | chr1.4:33174959-33174978 | MS.gene43347:intron | 10.0% |
| !! | TAATAAAATTTCTTCATTAT+AGG | + | chr1.4:33174537-33174556 | MS.gene43347:intron | 10.0% |
| !!! | ATAATCAATTTTTATAACTT+TGG | + | chr1.4:33172201-33172220 | MS.gene43347:intron | 10.0% |
| !!! | ATAGATTTTTTTACAATAAA+TGG | - | chr1.4:33172111-33172130 | None:intergenic | 10.0% |
| !!! | ATCAAATTCAAATTATATTT+TGG | + | chr1.4:33174488-33174507 | MS.gene43347:intron | 10.0% |
| !!! | TCAAATTCAAATTATATTTT+GGG | + | chr1.4:33174489-33174508 | MS.gene43347:intron | 10.0% |
| !!! | TTTTAAATAGTTTTGATTAA+AGG | + | chr1.4:33175796-33175815 | MS.gene43347:intron | 10.0% |
| !! | TATTCTTAAATCATTGTATT+TGG | - | chr1.4:33175690-33175709 | None:intergenic | 15.0% |
| !!! | AAGGCAAATATTTTAATAAT+CGG | + | chr1.4:33175815-33175834 | MS.gene43347:intron | 15.0% |
| !!! | TATATTAATTTTCGAAATGA+AGG | - | chr1.4:33172970-33172989 | None:intergenic | 15.0% |
| !! | AAAATTGATTATGACATGTT+TGG | - | chr1.4:33172193-33172212 | None:intergenic | 20.0% |
| !! | AAAATTTATGTAGGCTATTA+TGG | + | chr1.4:33174968-33174987 | MS.gene43347:intron | 20.0% |
| !! | AAATTGATTATGACATGTTT+GGG | - | chr1.4:33172192-33172211 | None:intergenic | 20.0% |
| !! | AATAGTAGTCAAATAAATCA+AGG | + | chr1.4:33173752-33173771 | MS.gene43347:CDS | 20.0% |
| !! | ACAACAATTTAAATCCAAAA+TGG | + | chr1.4:33174050-33174069 | MS.gene43347:CDS | 20.0% |
| !! | ACAGTATGCATATTAATATT+AGG | - | chr1.4:33175396-33175415 | None:intergenic | 20.0% |
| !! | AGAAAAAACATCAACTATAT+GGG | + | chr1.4:33173258-33173277 | MS.gene43347:intron | 20.0% |
| !! | ATAATTTGAATTTGATTGCA+GGG | - | chr1.4:33174484-33174503 | None:intergenic | 20.0% |
| !! | ATAGTAGTCAAATAAATCAA+GGG | + | chr1.4:33173753-33173772 | MS.gene43347:CDS | 20.0% |
| !! | GAAATTGAGTTTATTAAAGA+AGG | - | chr1.4:33175212-33175231 | None:intergenic | 20.0% |
| !! | GAGTAATCTATATATGAATA+TGG | - | chr1.4:33174156-33174175 | None:intergenic | 20.0% |
| !! | TAGAAAAAACATCAACTATA+TGG | + | chr1.4:33173257-33173276 | MS.gene43347:intron | 20.0% |
| !! | TATAATTTGAATTTGATTGC+AGG | - | chr1.4:33174485-33174504 | None:intergenic | 20.0% |
| !! | TATGGCTGAAATATATTATT+TGG | + | chr1.4:33172275-33172294 | MS.gene43347:intron | 20.0% |
| !! | TTTCAAAACTAATTCTTCAT+TGG | - | chr1.4:33172517-33172536 | None:intergenic | 20.0% |
| !!! | AAGAAATTTTATTAAGTGTG+AGG | - | chr1.4:33174531-33174550 | None:intergenic | 20.0% |
| !!! | ATCTGTTATTTTTAGTACAA+TGG | + | chr1.4:33175129-33175148 | MS.gene43347:intron | 20.0% |
| !!! | TTGTAAAATTGATTTGAAGA+TGG | + | chr1.4:33171801-33171820 | MS.gene43347:intron | 20.0% |
| ! | AAATATGCAATGAGAAAACA+AGG | - | chr1.4:33175362-33175381 | None:intergenic | 25.0% |
| ! | AAGGAAAAGAAATTTAGAGA+AGG | - | chr1.4:33176069-33176088 | None:intergenic | 25.0% |
| ! | AATAGTTTACAAACCTTTGT+GGG | - | chr1.4:33173107-33173126 | None:intergenic | 25.0% |
| ! | AATATAGCAATGAGATTATG+AGG | + | chr1.4:33172984-33173003 | MS.gene43347:intron | 25.0% |
| ! | AGAATCAGAAATGTAATATC+AGG | - | chr1.4:33172467-33172486 | None:intergenic | 25.0% |
| ! | AGAATTAAGATTATGGTCTA+TGG | + | chr1.4:33173620-33173639 | MS.gene43347:intron | 25.0% |
| ! | AGTTGAATACCATAAGTAAT+TGG | - | chr1.4:33172596-33172615 | None:intergenic | 25.0% |
| ! | ATAACTTCAGTCTTGAAAAT+AGG | - | chr1.4:33174028-33174047 | None:intergenic | 25.0% |
| ! | ATATGAATATGGTGTAACAT+CGG | - | chr1.4:33174145-33174164 | None:intergenic | 25.0% |
| ! | ATGTATCAAGTTCATGATTA+TGG | - | chr1.4:33175446-33175465 | None:intergenic | 25.0% |
| ! | ATTAATATGCATACTGTTCA+AGG | + | chr1.4:33175399-33175418 | MS.gene43347:intron | 25.0% |
| ! | CGATCAAATCAAATATGATA+TGG | + | chr1.4:33172257-33172276 | MS.gene43347:intron | 25.0% |
| ! | CTATGTATTGCTTATCATAA+CGG | + | chr1.4:33175653-33175672 | MS.gene43347:CDS | 25.0% |
| ! | GAAAGAAAGCAAAAAAATGA+GGG | - | chr1.4:33173042-33173061 | None:intergenic | 25.0% |
| ! | GAATCAGAAATGTAATATCA+GGG | - | chr1.4:33172466-33172485 | None:intergenic | 25.0% |
| ! | GTACTAAGGTTTATTATTAC+AGG | + | chr1.4:33176135-33176154 | MS.gene43347:intron | 25.0% |
| ! | GTCAGTTGTTCTATTAATTA+AGG | + | chr1.4:33174680-33174699 | MS.gene43347:intron | 25.0% |
| ! | TAGTAGTCAAATAAATCAAG+GGG | + | chr1.4:33173754-33173773 | MS.gene43347:CDS | 25.0% |
| ! | TATAATTTCCCTATGTGTTT+AGG | + | chr1.4:33175485-33175504 | MS.gene43347:intron | 25.0% |
| ! | TATATATTTCCAGCTTCAAA+TGG | + | chr1.4:33174752-33174771 | MS.gene43347:intron | 25.0% |
| ! | TGAAAGAAAGCAAAAAAATG+AGG | - | chr1.4:33173043-33173062 | None:intergenic | 25.0% |
| ! | TGTATGCAGAATTAAGATTA+TGG | + | chr1.4:33173613-33173632 | MS.gene43347:intron | 25.0% |
| ! | TTCAGAACGAAGTTAAAAAA+AGG | - | chr1.4:33174942-33174961 | None:intergenic | 25.0% |
| !! | ACTCTAATGAATCAAAGTTT+TGG | + | chr1.4:33175245-33175264 | MS.gene43347:intron | 25.0% |
| !! | AGTCAGAATAATTTTAGATG+GGG | + | chr1.4:33173194-33173213 | MS.gene43347:intron | 25.0% |
| !! | CAGTCAGAATAATTTTAGAT+GGG | + | chr1.4:33173193-33173212 | MS.gene43347:intron | 25.0% |
| !! | CATTTGATTGGTTATTCTTA+AGG | - | chr1.4:33175902-33175921 | None:intergenic | 25.0% |
| !! | TAAATTTCTTTTCCTTAGCA+TGG | + | chr1.4:33176073-33176092 | MS.gene43347:intron | 25.0% |
| !! | TAACATTTTATGATTAACCG+AGG | + | chr1.4:33173144-33173163 | MS.gene43347:intron | 25.0% |
| !! | TAATCCATTATCACTGTTTT+TGG | + | chr1.4:33171702-33171721 | MS.gene43347:intron | 25.0% |
| !! | TCAGTCAGAATAATTTTAGA+TGG | + | chr1.4:33173192-33173211 | MS.gene43347:intron | 25.0% |
| !! | TGAATTCTTTTTCCTGAAAA+GGG | + | chr1.4:33172301-33172320 | MS.gene43347:intron | 25.0% |
| !! | TTAATTTTCTCTATCCATTC+CGG | - | chr1.4:33172902-33172921 | None:intergenic | 25.0% |
| !! | TTTAATTTCTTTCTCTATGC+AGG | + | chr1.4:33174184-33174203 | MS.gene43347:intron | 25.0% |
| !! | TTTATTGACTACATATCTAG+TGG | + | chr1.4:33174613-33174632 | MS.gene43347:CDS | 25.0% |
| !! | TTTTACAAAATCAATGAAGC+AGG | - | chr1.4:33171920-33171939 | None:intergenic | 25.0% |
| !! | TTTTCTAACAAGAATTTAGC+AGG | - | chr1.4:33173244-33173263 | None:intergenic | 25.0% |
| !! | TTTTGCATCTATATACAGTA+TGG | - | chr1.4:33174324-33174343 | None:intergenic | 25.0% |
| !!! | AATGAATCAAAGTTTTGGAT+TGG | + | chr1.4:33175250-33175269 | MS.gene43347:intron | 25.0% |
| !!! | ACTATATGGGTATTTTAGTT+TGG | + | chr1.4:33173271-33173290 | MS.gene43347:intron | 25.0% |
| !!! | ATGCTAGACTATTTTTACAA+AGG | + | chr1.4:33175159-33175178 | MS.gene43347:intron | 25.0% |
| !!! | CTTTTTAAAATGACCTGAAA+TGG | + | chr1.4:33172740-33172759 | MS.gene43347:intron | 25.0% |
| !!! | TGATTTTTTCAGTTTACTGT+CGG | - | chr1.4:33174368-33174387 | None:intergenic | 25.0% |
| !!! | TTTTGAAATTAACCCTTTTC+AGG | - | chr1.4:33172316-33172335 | None:intergenic | 25.0% |
| AAGCTATACCAAGAGAAAAA+AGG | + | chr1.4:33174403-33174422 | MS.gene43347:CDS | 30.0% | |
| AATCGAAACACTCTAAGTAA+TGG | - | chr1.4:33174215-33174234 | None:intergenic | 30.0% | |
| ACCTGCCAAAAATACAATAA+TGG | - | chr1.4:33176367-33176386 | None:intergenic | 30.0% | |
| ACTCTTGATATCCTTAGAAA+AGG | - | chr1.4:33173983-33174002 | None:intergenic | 30.0% | |
| AGAACATATATGATGAAGCT+AGG | - | chr1.4:33173895-33173914 | None:intergenic | 30.0% | |
| AGATGTCACAGATATATGAT+TGG | - | chr1.4:33175771-33175790 | None:intergenic | 30.0% | |
| AGGTTTATTATTACAGGTAC+TGG | + | chr1.4:33176141-33176160 | MS.gene43347:intron | 30.0% | |
| ATAACTGGTCCAAATAAAGT+CGG | - | chr1.4:33175576-33175595 | None:intergenic | 30.0% | |
| ATTAAAGCCTAGAGATGTTT+AGG | - | chr1.4:33174292-33174311 | None:intergenic | 30.0% | |
| ATTTATGTAGGCTATTATGG+AGG | + | chr1.4:33174971-33174990 | MS.gene43347:intron | 30.0% | |
| CAAACCAAAAACAGTGATAA+TGG | - | chr1.4:33171709-33171728 | None:intergenic | 30.0% | |
| CAAGGTGATATAAGTTTCTT+AGG | - | chr1.4:33175344-33175363 | None:intergenic | 30.0% | |
| CAGATTGAAACAATGAGATA+TGG | - | chr1.4:33175075-33175094 | None:intergenic | 30.0% | |
| CCAACTATAAGAATCGATAA+CGG | - | chr1.4:33176003-33176022 | None:intergenic | 30.0% | |
| CCTGCCAAAAATACAATAAT+GGG | - | chr1.4:33176366-33176385 | None:intergenic | 30.0% | |
| CTCATTGTTTCAATCTGAAT+GGG | + | chr1.4:33175078-33175097 | MS.gene43347:CDS | 30.0% | |
| CTGCCAAAAATACAATAATG+GGG | - | chr1.4:33176365-33176384 | None:intergenic | 30.0% | |
| CTTCATTGGCAAAAATACTT+TGG | - | chr1.4:33172503-33172522 | None:intergenic | 30.0% | |
| GAACGAAGTTAAAAAAAGGT+AGG | - | chr1.4:33174938-33174957 | None:intergenic | 30.0% | |
| GAATACCATAAGTAATTGGA+AGG | - | chr1.4:33172592-33172611 | None:intergenic | 30.0% | |
| GAATAGTTTACAAACCTTTG+TGG | - | chr1.4:33173108-33173127 | None:intergenic | 30.0% | |
| TCAGAGAATAACATGTACTA+AGG | + | chr1.4:33176121-33176140 | MS.gene43347:intron | 30.0% | |
| TCGGTTAAATTCATACCAAA+AGG | + | chr1.4:33174820-33174839 | MS.gene43347:CDS | 30.0% | |
| TCTCATTGTTTCAATCTGAA+TGG | + | chr1.4:33175077-33175096 | MS.gene43347:CDS | 30.0% | |
| TGGATTTGAACTAAACTTCT+TGG | + | chr1.4:33174633-33174652 | MS.gene43347:CDS | 30.0% | |
| TGTGGATCAATATTGTGAAA+AGG | + | chr1.4:33174579-33174598 | MS.gene43347:CDS | 30.0% | |
| TTACTTTGTACTTCTCTCAT+GGG | - | chr1.4:33176238-33176257 | None:intergenic | 30.0% | |
| TTTACAAAACTAACGAAGCA+CGG | - | chr1.4:33171788-33171807 | None:intergenic | 30.0% | |
| TTTACACTGTCAAACAATCA+TGG | + | chr1.4:33175745-33175764 | MS.gene43347:intron | 30.0% | |
| ! | AGAAGTACAAAGTAAGTACT+AGG | + | chr1.4:33176243-33176262 | MS.gene43347:intron | 30.0% |
| ! | AGTGCTGTTATATGATGAAA+GGG | - | chr1.4:33175628-33175647 | None:intergenic | 30.0% |
| ! | CTGAATTCTTTTTCCTGAAA+AGG | + | chr1.4:33172300-33172319 | MS.gene43347:intron | 30.0% |
| ! | GAACCCCATTATTGTATTTT+TGG | + | chr1.4:33176359-33176378 | MS.gene43347:intron | 30.0% |
| ! | GTCAGAATAATTTTAGATGG+GGG | + | chr1.4:33173195-33173214 | MS.gene43347:intron | 30.0% |
| ! | TAGTGCTGTTATATGATGAA+AGG | - | chr1.4:33175629-33175648 | None:intergenic | 30.0% |
| ! | TTCTTCATTATAGGTTCTGA+AGG | + | chr1.4:33174546-33174565 | MS.gene43347:intron | 30.0% |
| !! | ATTACATCGATTTATCTGGT+CGG | + | chr1.4:33174801-33174820 | MS.gene43347:CDS | 30.0% |
| !! | TCTTCATTATAGGTTCTGAA+GGG | + | chr1.4:33174547-33174566 | MS.gene43347:intron | 30.0% |
| !! | TTCATTAGAGTTGATGAATG+AGG | - | chr1.4:33175236-33175255 | None:intergenic | 30.0% |
| !! | TTGCATTACATCGATTTATC+TGG | + | chr1.4:33174797-33174816 | MS.gene43347:CDS | 30.0% |
| !! | TTTTCTAAGGATATCAAGAG+TGG | + | chr1.4:33173982-33174001 | MS.gene43347:CDS | 30.0% |
| !!! | AATTTGCTCCTTTTTTCTCT+TGG | - | chr1.4:33174414-33174433 | None:intergenic | 30.0% |
| !!! | ATTATTGTATTTTTGGCAGG+TGG | + | chr1.4:33176366-33176385 | MS.gene43347:intron | 30.0% |
| !!! | CTAGACTATTTTTACAAAGG+TGG | + | chr1.4:33175162-33175181 | MS.gene43347:intron | 30.0% |
| AAAGAAAGGAGATGGCAAAT+TGG | + | chr1.4:33172835-33172854 | MS.gene43347:CDS | 35.0% | |
| AAAGCAAAAAAATGAGGGAG+AGG | - | chr1.4:33173037-33173056 | None:intergenic | 35.0% | |
| ACCTTAAGGCTTCAAAACAA+AGG | + | chr1.4:33173725-33173744 | MS.gene43347:CDS | 35.0% | |
| AGCATGTAACTTACTTGATC+TGG | + | chr1.4:33172639-33172658 | MS.gene43347:CDS | 35.0% | |
| AGTGGCAATCATGTACTTAT+CGG | + | chr1.4:33174243-33174262 | MS.gene43347:CDS | 35.0% | |
| ATTTGGACCAGTTATCAACA+TGG | + | chr1.4:33175581-33175600 | MS.gene43347:CDS | 35.0% | |
| CATAACGAACTGTTTGAATC+CGG | + | chr1.4:33172880-33172899 | MS.gene43347:CDS | 35.0% | |
| CTGAATGATCAAGAATTCCT+TGG | + | chr1.4:33173383-33173402 | MS.gene43347:CDS | 35.0% | |
| CTTACTTTGTACTTCTCTCA+TGG | - | chr1.4:33176239-33176258 | None:intergenic | 35.0% | |
| GAAATTTCAGAGTGATCCTA+TGG | + | chr1.4:33172799-33172818 | MS.gene43347:intron | 35.0% | |
| GAAGATCATGGACATTTGAT+TGG | - | chr1.4:33175914-33175933 | None:intergenic | 35.0% | |
| GACATTGACACATCATATCA+TGG | + | chr1.4:33173077-33173096 | MS.gene43347:CDS | 35.0% | |
| GATAACAAAGCATACTTAGC+TGG | - | chr1.4:33176101-33176120 | None:intergenic | 35.0% | |
| GATGGCAAATTGGAAGAATT+AGG | + | chr1.4:33172845-33172864 | MS.gene43347:CDS | 35.0% | |
| GTAAGCTTGATACTTGTCAA+TGG | + | chr1.4:33174842-33174861 | MS.gene43347:intron | 35.0% | |
| GTATATGCAAAGAAAGGAGA+TGG | + | chr1.4:33172827-33172846 | MS.gene43347:CDS | 35.0% | |
| TAAGGCTTCAAAACAAAGGA+GGG | + | chr1.4:33173729-33173748 | MS.gene43347:CDS | 35.0% | |
| TACTTTGTACTTCTCTCATG+GGG | - | chr1.4:33176237-33176256 | None:intergenic | 35.0% | |
| TCAAGAAACTATAGATGCTG+TGG | + | chr1.4:33175960-33175979 | MS.gene43347:CDS | 35.0% | |
| TCCTACAACCTAAACACATA+GGG | - | chr1.4:33175496-33175515 | None:intergenic | 35.0% | |
| TCGATGTAATGCAAAGAATC+TGG | - | chr1.4:33174791-33174810 | None:intergenic | 35.0% | |
| TGAAAGATAGCAACCATTTC+AGG | - | chr1.4:33172756-33172775 | None:intergenic | 35.0% | |
| TGAACTAAACTTCTTGGTTG+CGG | + | chr1.4:33174639-33174658 | MS.gene43347:CDS | 35.0% | |
| TGCTGGAAATTAAGACAAAG+TGG | - | chr1.4:33174079-33174098 | None:intergenic | 35.0% | |
| TGTCTTAATTTCCAGCAGTT+TGG | + | chr1.4:33174082-33174101 | MS.gene43347:CDS | 35.0% | |
| TGTTTAGCCTAAACATCTCT+AGG | + | chr1.4:33174282-33174301 | MS.gene43347:intron | 35.0% | |
| TGTTTCGATTTCAATAGCAG+TGG | + | chr1.4:33174225-33174244 | MS.gene43347:CDS | 35.0% | |
| TTAAGGCTTCAAAACAAAGG+AGG | + | chr1.4:33173728-33173747 | MS.gene43347:CDS | 35.0% | |
| TTACTTTACTTCCAAACTGC+TGG | - | chr1.4:33174096-33174115 | None:intergenic | 35.0% | |
| TTAGATGGGGGTAAAATACA+TGG | + | chr1.4:33173207-33173226 | MS.gene43347:intron | 35.0% | |
| TTCATGATTATGGAGCAAGA+AGG | - | chr1.4:33175436-33175455 | None:intergenic | 35.0% | |
| ! | CAAGTATCAAGCTTACCTTT+TGG | - | chr1.4:33174838-33174857 | None:intergenic | 35.0% |
| ! | TCGATTCTTATAGTTGGTGT+TGG | + | chr1.4:33176006-33176025 | MS.gene43347:CDS | 35.0% |
| ! | TCTCTTGGTATAGCTTTTCA+AGG | - | chr1.4:33174399-33174418 | None:intergenic | 35.0% |
| ! | TTTGGAATAAAAAGCCGTGA+CGG | + | chr1.4:33173289-33173308 | MS.gene43347:intron | 35.0% |
| ! | TTTGGCCTTCCAATTACTTA+TGG | + | chr1.4:33172584-33172603 | MS.gene43347:intron | 35.0% |
| !! | CCGTTATCGATTCTTATAGT+TGG | + | chr1.4:33176000-33176019 | MS.gene43347:CDS | 35.0% |
| !! | TGGTTTGTTTGTATTGTGTC+TGG | + | chr1.4:33171883-33171902 | MS.gene43347:intron | 35.0% |
| !!! | CCCATTATTGTATTTTTGGC+AGG | + | chr1.4:33176363-33176382 | MS.gene43347:intron | 35.0% |
| !!! | TCCTTTGTTTTGAAGCCTTA+AGG | - | chr1.4:33173729-33173748 | None:intergenic | 35.0% |
| !!! | TGAGTTTTGGTTGCTAAGTT+TGG | + | chr1.4:33172566-33172585 | MS.gene43347:intron | 35.0% |
| AATCGTACATACCTCGACAT+TGG | - | chr1.4:33171680-33171699 | None:intergenic | 40.0% | |
| AATTCTGCATACAGCAGAGT+TGG | - | chr1.4:33173606-33173625 | None:intergenic | 40.0% | |
| ACAATGAGATATGGTACCTC+CGG | - | chr1.4:33175066-33175085 | None:intergenic | 40.0% | |
| ACCTCGACATTGGTAAACAA+TGG | - | chr1.4:33171670-33171689 | None:intergenic | 40.0% | |
| ATATCAAGAGTGGTTGAGAG+TGG | + | chr1.4:33173992-33174011 | MS.gene43347:CDS | 40.0% | |
| ATATCATGGTGTTCCCACAA+AGG | + | chr1.4:33173091-33173110 | MS.gene43347:CDS | 40.0% | |
| ATCACTCCTAGGATCAGTAT+TGG | - | chr1.4:33175277-33175296 | None:intergenic | 40.0% | |
| ATGAAAGCCAGAAATTGACC+AGG | - | chr1.4:33176429-33176448 | None:intergenic | 40.0% | |
| ATGACGTGTTTGACATGTGT+TGG | + | chr1.4:33171863-33171882 | MS.gene43347:intron | 40.0% | |
| ATGTAGGCTATTATGGAGGT+TGG | + | chr1.4:33174975-33174994 | MS.gene43347:intron | 40.0% | |
| ATTGGACCAATACTGATCCT+AGG | + | chr1.4:33175268-33175287 | MS.gene43347:intron | 40.0% | |
| CGTCGCTTAAAAAGTTCTAC+TGG | + | chr1.4:33176178-33176197 | MS.gene43347:CDS | 40.0% | |
| CTCCTACAACCTAAACACAT+AGG | - | chr1.4:33175497-33175516 | None:intergenic | 40.0% | |
| GCTGTGGTATATGCAAAGAA+AGG | + | chr1.4:33172821-33172840 | MS.gene43347:CDS | 40.0% | |
| GTGGCAATCATGTACTTATC+GGG | + | chr1.4:33174244-33174263 | MS.gene43347:CDS | 40.0% | |
| TACTCCATTTCATCACTCCT+AGG | - | chr1.4:33175288-33175307 | None:intergenic | 40.0% | |
| TATCAACATGGCAGCACAAA+TGG | + | chr1.4:33175593-33175612 | MS.gene43347:CDS | 40.0% | |
| TGAAGGATAGCTTACACAAG+TGG | - | chr1.4:33172953-33172972 | None:intergenic | 40.0% | |
| TGATAAGCAGTTTCCTGCTT+GGG | + | chr1.4:33175022-33175041 | MS.gene43347:CDS | 40.0% | |
| TGATCAAGAATTCCTTGGAG+AGG | + | chr1.4:33173388-33173407 | MS.gene43347:CDS | 40.0% | |
| TGATCCTAGGAGTGATGAAA+TGG | + | chr1.4:33175281-33175300 | MS.gene43347:intron | 40.0% | |
| TGATCTGGACATTGCATCAA+AGG | + | chr1.4:33172654-33172673 | MS.gene43347:CDS | 40.0% | |
| TGTTATCCAAGTGAGAGCAA+CGG | - | chr1.4:33173838-33173857 | None:intergenic | 40.0% | |
| TTGTGTGCGTGTGTATACTA+TGG | + | chr1.4:33173670-33173689 | MS.gene43347:intron | 40.0% | |
| TTTGCATATACCACAGCCAT+AGG | - | chr1.4:33172818-33172837 | None:intergenic | 40.0% | |
| ! | AGACAAAGTGGTCTCCATTT+TGG | - | chr1.4:33174067-33174086 | None:intergenic | 40.0% |
| ! | AGTTGTCGAAGTGTGAGTTT+TGG | + | chr1.4:33172553-33172572 | MS.gene43347:intron | 40.0% |
| ! | ATTGAATAGAGGGTGCATGA+GGG | - | chr1.4:33176488-33176507 | None:intergenic | 40.0% |
| ! | GGTGCTTCTCTAGTTTAACT+TGG | + | chr1.4:33176264-33176283 | MS.gene43347:intron | 40.0% |
| ! | GTCATCGTGATTTTTCTTGC+AGG | + | chr1.4:33173955-33173974 | MS.gene43347:intron | 40.0% |
| ! | TATTGAATAGAGGGTGCATG+AGG | - | chr1.4:33176489-33176508 | None:intergenic | 40.0% |
| ! | TCTTGCAGGATCCTTTTCTA+AGG | + | chr1.4:33173969-33173988 | MS.gene43347:intron | 40.0% |
| ! | TGTAGGAGTTGAAGGCATAA+TGG | + | chr1.4:33175509-33175528 | MS.gene43347:CDS | 40.0% |
| ! | TTGTTGGTTGTTGCAGATTC+AGG | - | chr1.4:33171604-33171623 | None:intergenic | 40.0% |
| !! | GTTTAGGTTGTAGGAGTTGA+AGG | + | chr1.4:33175501-33175520 | MS.gene43347:intron | 40.0% |
| !! | TCCCTATGTGTTTAGGTTGT+AGG | + | chr1.4:33175492-33175511 | MS.gene43347:intron | 40.0% |
| AAACTTCACCAACACCGTCA+CGG | - | chr1.4:33173306-33173325 | None:intergenic | 45.0% | |
| AAAGCAGCGAAAGAAGCAGT+AGG | + | chr1.4:33171568-33171587 | MS.gene43347:CDS | 45.0% | |
| AACTGTCTCCTCAGCATGAA+TGG | - | chr1.4:33173786-33173805 | None:intergenic | 45.0% | |
| AATCTGAATGGGAGTCCAAC+TGG | + | chr1.4:33175089-33175108 | MS.gene43347:CDS | 45.0% | |
| AATGTCCATGATCTTCCCAC+AGG | + | chr1.4:33175918-33175937 | MS.gene43347:intron | 45.0% | |
| ACACCTCTGATCATAAGCGT+CGG | - | chr1.4:33171980-33171999 | None:intergenic | 45.0% | |
| AGATTGTGACCAAACCAAGC+AGG | + | chr1.4:33173696-33173715 | MS.gene43347:intron | 45.0% | |
| AGCGGTGTAGAAGAAATCGA+CGG | - | chr1.4:33171635-33171654 | None:intergenic | 45.0% | |
| ATAAAAAGCCGTGACGGTGT+TGG | + | chr1.4:33173295-33173314 | MS.gene43347:intron | 45.0% | |
| ATCCATCCATGAAGCATGGA+CGG | - | chr1.4:33172054-33172073 | None:intergenic | 45.0% | |
| ATGACCACCAGTCACAAACA+CGG | - | chr1.4:33172029-33172048 | None:intergenic | 45.0% | |
| CAAGCAGGAGCTTAACCTTA+AGG | + | chr1.4:33173711-33173730 | MS.gene43347:CDS | 45.0% | |
| CAATGAGATATGGTACCTCC+GGG | - | chr1.4:33175065-33175084 | None:intergenic | 45.0% | |
| CAATGGCTGAAAACCTTGAG+CGG | - | chr1.4:33171653-33171672 | None:intergenic | 45.0% | |
| CAGACATCACAGACACAACA+CGG | - | chr1.4:33171762-33171781 | None:intergenic | 45.0% | |
| CGAACTGTTTGAATCCGGAA+TGG | + | chr1.4:33172885-33172904 | MS.gene43347:CDS | 45.0% | |
| CTGATAAGCAGTTTCCTGCT+TGG | + | chr1.4:33175021-33175040 | MS.gene43347:CDS | 45.0% | |
| CTTAAGGTTAAGCTCCTGCT+TGG | - | chr1.4:33173713-33173732 | None:intergenic | 45.0% | |
| GATAAGCAGTTTCCTGCTTG+GGG | + | chr1.4:33175023-33175042 | MS.gene43347:CDS | 45.0% | |
| GATTTCTTCTACACCGCTCA+AGG | + | chr1.4:33171637-33171656 | MS.gene43347:CDS | 45.0% | |
| GCCATTGTTTACCAATGTCG+AGG | + | chr1.4:33171666-33171685 | MS.gene43347:CDS | 45.0% | |
| GGAACTACCTGGTCAATTTC+TGG | + | chr1.4:33176419-33176438 | MS.gene43347:CDS | 45.0% | |
| GGATTTGGAGGAAAGATACC+CGG | + | chr1.4:33175044-33175063 | MS.gene43347:CDS | 45.0% | |
| GGCAATTACCATTCATGCTG+AGG | + | chr1.4:33173775-33173794 | MS.gene43347:CDS | 45.0% | |
| GTATACACACGCACACAAAC+AGG | - | chr1.4:33173668-33173687 | None:intergenic | 45.0% | |
| TACAGGTAGAACTCATGCCT+CGG | - | chr1.4:33173164-33173183 | None:intergenic | 45.0% | |
| TATCTTCCGTTGCTCTCACT+TGG | + | chr1.4:33173829-33173848 | MS.gene43347:CDS | 45.0% | |
| TCACATCCATCCATGAAGCA+TGG | - | chr1.4:33172058-33172077 | None:intergenic | 45.0% | |
| TCTGAAGGGTCAACTCTTTG+TGG | + | chr1.4:33174561-33174580 | MS.gene43347:CDS | 45.0% | |
| TCTGACTGAGAAAGCAGTAC+AGG | - | chr1.4:33173181-33173200 | None:intergenic | 45.0% | |
| TGCAAAGAATCTGGCTGTTG+AGG | - | chr1.4:33174782-33174801 | None:intergenic | 45.0% | |
| TTGGTTGCGGTAGATTTCAC+TGG | + | chr1.4:33174652-33174671 | MS.gene43347:CDS | 45.0% | |
| ! | ACGTCATCGATCAGAAGTGT+CGG | - | chr1.4:33171850-33171869 | None:intergenic | 45.0% |
| ! | AGGAGTTGAAGGCATAATGG+AGG | + | chr1.4:33175512-33175531 | MS.gene43347:CDS | 45.0% |
| ! | CTCTGTTGTGCAAGCTCTTT+TGG | + | chr1.4:33176395-33176414 | MS.gene43347:CDS | 45.0% |
| ! | GAAGGCATAATGGAGGCTTA+TGG | + | chr1.4:33175519-33175538 | MS.gene43347:CDS | 45.0% |
| ! | GGCTAGTTGCACTTTATCAG+AGG | + | chr1.4:33173409-33173428 | MS.gene43347:CDS | 45.0% |
| ! | TGAGGACTTCCATTTGAAGC+TGG | - | chr1.4:33174764-33174783 | None:intergenic | 45.0% |
| ! | TGTTGTGCAAGCTCTTTTGG+AGG | + | chr1.4:33176398-33176417 | MS.gene43347:CDS | 45.0% |
| !! | AAGCGCTGATTTCAAGAGCA+TGG | + | chr1.4:33176029-33176048 | MS.gene43347:CDS | 45.0% |
| !! | CAGGTACTGGATGCTGATAA+TGG | + | chr1.4:33176154-33176173 | MS.gene43347:intron | 45.0% |
| !! | TGTGCTGCCATGTTGATAAC+TGG | - | chr1.4:33175591-33175610 | None:intergenic | 45.0% |
| !! | TAAATAAATATTTCTTTAAT+TGG | - | chr1.4:33172374-33172393 | None:intergenic | 5.0% |
| !!! | TAAAACATTTTTATTTTTTT+TGG | + | chr1.4:33176308-33176327 | MS.gene43347:intron | 5.0% |
| ACACGGACACAGACACAACA+CGG | - | chr1.4:33171745-33171764 | None:intergenic | 50.0% | |
| ACACGGACTCTGACATGTGT+TGG | - | chr1.4:33172012-33172031 | None:intergenic | 50.0% | |
| ACTTAGCTGGAGCCATGCTA+AGG | - | chr1.4:33176088-33176107 | None:intergenic | 50.0% | |
| ATCGACGGCGTCATTGTTGT+TGG | - | chr1.4:33171620-33171639 | None:intergenic | 50.0% | |
| CAGACACACACACATGAAGC+TGG | + | chr1.4:33173558-33173577 | MS.gene43347:intron | 50.0% | |
| CAGTTTCCTGCTTGGGGATT+TGG | + | chr1.4:33175029-33175048 | MS.gene43347:CDS | 50.0% | |
| CTGTAACAACTCCGTCCTGT+GGG | - | chr1.4:33175936-33175955 | None:intergenic | 50.0% | |
| GGTTAAGCTCCTGCTTGGTT+TGG | - | chr1.4:33173708-33173727 | None:intergenic | 50.0% | |
| TCAAGAGTGGTTGAGAGTGG+AGG | + | chr1.4:33173995-33174014 | MS.gene43347:CDS | 50.0% | |
| TCAGAGTCCGTGTTTGTGAC+TGG | + | chr1.4:33172019-33172038 | MS.gene43347:intron | 50.0% | |
| TCAGAGTGATCCTATGGCTG+TGG | + | chr1.4:33172805-33172824 | MS.gene43347:intron | 50.0% | |
| TCATGTCCGTCCATGCTTCA+TGG | + | chr1.4:33172045-33172064 | MS.gene43347:intron | 50.0% | |
| TCCATGATCTTCCCACAGGA+CGG | + | chr1.4:33175922-33175941 | MS.gene43347:intron | 50.0% | |
| TCTGTAACAACTCCGTCCTG+TGG | - | chr1.4:33175937-33175956 | None:intergenic | 50.0% | |
| TGAGGGAAATGCGAAACGAG+TGG | - | chr1.4:33176471-33176490 | None:intergenic | 50.0% | |
| TTTCCTCCAAATCCCCAAGC+AGG | - | chr1.4:33175038-33175057 | None:intergenic | 50.0% | |
| TTTCCTGCTTGGGGATTTGG+AGG | + | chr1.4:33175032-33175051 | MS.gene43347:CDS | 50.0% | |
| TTTCTCACCTCAGAGCCAGT+TGG | - | chr1.4:33175107-33175126 | None:intergenic | 50.0% | |
| TTTGGAGGAAAGATACCCGG+AGG | + | chr1.4:33175047-33175066 | MS.gene43347:CDS | 50.0% | |
| ! | AAGTGCAACTAGCCTCTCCA+AGG | - | chr1.4:33173403-33173422 | None:intergenic | 50.0% |
| !! | CGCTGATTTCAAGAGCATGG+AGG | + | chr1.4:33176032-33176051 | MS.gene43347:CDS | 50.0% |
| !! | GCTCTTTTGGAGGAACTACC+TGG | + | chr1.4:33176408-33176427 | MS.gene43347:CDS | 50.0% |
| CACACGCAGTGGACAAGAGA+AGG | + | chr1.4:33174447-33174466 | MS.gene43347:CDS | 55.0% | |
| CTTCTCTTGTCCACTGCGTG+TGG | - | chr1.4:33174449-33174468 | None:intergenic | 55.0% | |
| GAGTCCGTGTTTGTGACTGG+TGG | + | chr1.4:33172022-33172041 | MS.gene43347:intron | 55.0% | |
| GCAGCGAAAGAAGCAGTAGG+AGG | + | chr1.4:33171571-33171590 | MS.gene43347:CDS | 55.0% | |
| GTCCGTCCATGCTTCATGGA+TGG | + | chr1.4:33172049-33172068 | MS.gene43347:intron | 55.0% | |
| TCCGTCCTGTGGGAAGATCA+TGG | - | chr1.4:33175926-33175945 | None:intergenic | 55.0% | |
| TCTTGTCCACTGCGTGTGGA+TGG | - | chr1.4:33174445-33174464 | None:intergenic | 55.0% | |
| ! | GCACCGACGCTTATGATCAG+AGG | + | chr1.4:33171974-33171993 | MS.gene43347:intron | 55.0% |
| GGCAGCACAAATGGCTGCAG+AGG | + | chr1.4:33175602-33175621 | MS.gene43347:CDS | 60.0% | |
| GTCATGCCATCCACACGCAG+TGG | + | chr1.4:33174436-33174455 | MS.gene43347:CDS | 60.0% | |
| !! | TGGGAGTCCAACTGGCTCTG+AGG | + | chr1.4:33175097-33175116 | MS.gene43347:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 33171565 | 33176509 | 33171565 | ID=MS.gene43347 |
| chr1.4 | mRNA | 33171565 | 33176509 | 33171565 | ID=MS.gene43347.t1;Parent=MS.gene43347 |
| chr1.4 | exon | 33171565 | 33171687 | 33171565 | ID=MS.gene43347.t1.exon1;Parent=MS.gene43347.t1 |
| chr1.4 | CDS | 33171565 | 33171687 | 33171565 | ID=cds.MS.gene43347.t1;Parent=MS.gene43347.t1 |
| chr1.4 | exon | 33172628 | 33172675 | 33172628 | ID=MS.gene43347.t1.exon2;Parent=MS.gene43347.t1 |
| chr1.4 | CDS | 33172628 | 33172675 | 33172628 | ID=cds.MS.gene43347.t1;Parent=MS.gene43347.t1 |
| chr1.4 | exon | 33172809 | 33172957 | 33172809 | ID=MS.gene43347.t1.exon3;Parent=MS.gene43347.t1 |
| chr1.4 | CDS | 33172809 | 33172957 | 33172809 | ID=cds.MS.gene43347.t1;Parent=MS.gene43347.t1 |
| chr1.4 | exon | 33173064 | 33173112 | 33173064 | ID=MS.gene43347.t1.exon4;Parent=MS.gene43347.t1 |
| chr1.4 | CDS | 33173064 | 33173112 | 33173064 | ID=cds.MS.gene43347.t1;Parent=MS.gene43347.t1 |
| chr1.4 | exon | 33173374 | 33173430 | 33173374 | ID=MS.gene43347.t1.exon5;Parent=MS.gene43347.t1 |
| chr1.4 | CDS | 33173374 | 33173430 | 33173374 | ID=cds.MS.gene43347.t1;Parent=MS.gene43347.t1 |
| chr1.4 | exon | 33173698 | 33173877 | 33173698 | ID=MS.gene43347.t1.exon6;Parent=MS.gene43347.t1 |
| chr1.4 | CDS | 33173698 | 33173877 | 33173698 | ID=cds.MS.gene43347.t1;Parent=MS.gene43347.t1 |
| chr1.4 | exon | 33173977 | 33174111 | 33173977 | ID=MS.gene43347.t1.exon7;Parent=MS.gene43347.t1 |
| chr1.4 | CDS | 33173977 | 33174111 | 33173977 | ID=cds.MS.gene43347.t1;Parent=MS.gene43347.t1 |
| chr1.4 | exon | 33174225 | 33174265 | 33174225 | ID=MS.gene43347.t1.exon8;Parent=MS.gene43347.t1 |
| chr1.4 | CDS | 33174225 | 33174265 | 33174225 | ID=cds.MS.gene43347.t1;Parent=MS.gene43347.t1 |
| chr1.4 | exon | 33174372 | 33174468 | 33174372 | ID=MS.gene43347.t1.exon9;Parent=MS.gene43347.t1 |
| chr1.4 | CDS | 33174372 | 33174468 | 33174372 | ID=cds.MS.gene43347.t1;Parent=MS.gene43347.t1 |
| chr1.4 | exon | 33174559 | 33174673 | 33174559 | ID=MS.gene43347.t1.exon10;Parent=MS.gene43347.t1 |
| chr1.4 | CDS | 33174559 | 33174673 | 33174559 | ID=cds.MS.gene43347.t1;Parent=MS.gene43347.t1 |
| chr1.4 | exon | 33174765 | 33174841 | 33174765 | ID=MS.gene43347.t1.exon11;Parent=MS.gene43347.t1 |
| chr1.4 | CDS | 33174765 | 33174841 | 33174765 | ID=cds.MS.gene43347.t1;Parent=MS.gene43347.t1 |
| chr1.4 | exon | 33174981 | 33175118 | 33174981 | ID=MS.gene43347.t1.exon12;Parent=MS.gene43347.t1 |
| chr1.4 | CDS | 33174981 | 33175118 | 33174981 | ID=cds.MS.gene43347.t1;Parent=MS.gene43347.t1 |
| chr1.4 | exon | 33175507 | 33175674 | 33175507 | ID=MS.gene43347.t1.exon13;Parent=MS.gene43347.t1 |
| chr1.4 | CDS | 33175507 | 33175674 | 33175507 | ID=cds.MS.gene43347.t1;Parent=MS.gene43347.t1 |
| chr1.4 | exon | 33175940 | 33176053 | 33175940 | ID=MS.gene43347.t1.exon14;Parent=MS.gene43347.t1 |
| chr1.4 | CDS | 33175940 | 33176053 | 33175940 | ID=cds.MS.gene43347.t1;Parent=MS.gene43347.t1 |
| chr1.4 | exon | 33176157 | 33176253 | 33176157 | ID=MS.gene43347.t1.exon15;Parent=MS.gene43347.t1 |
| chr1.4 | CDS | 33176157 | 33176253 | 33176157 | ID=cds.MS.gene43347.t1;Parent=MS.gene43347.t1 |
| chr1.4 | exon | 33176385 | 33176509 | 33176385 | ID=MS.gene43347.t1.exon16;Parent=MS.gene43347.t1 |
| chr1.4 | CDS | 33176385 | 33176509 | 33176385 | ID=cds.MS.gene43347.t1;Parent=MS.gene43347.t1 |
| Gene Sequence |
| Protein sequence |
