Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43456.t1 | XP_013458681.1 | 96.6 | 447 | 14 | 1 | 14 | 460 | 15 | 460 | 7.50E-257 | 896 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43456.t1 | Q9FIK0 | 76.8 | 431 | 86 | 4 | 36 | 457 | 13 | 438 | 5.5e-192 | 671.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43456.t1 | G7ZZU2 | 96.6 | 447 | 14 | 1 | 14 | 460 | 15 | 460 | 5.4e-257 | 896.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43456 | MS.gene40242 | PPI |
| MS.gene43456 | MS.gene014596 | PPI |
| MS.gene43456 | MS.gene75027 | PPI |
| MS.gene43456 | MS.gene69076 | PPI |
| MS.gene66384 | MS.gene43456 | PPI |
| MS.gene014594 | MS.gene43456 | PPI |
| MS.gene030334 | MS.gene43456 | PPI |
| MS.gene40737 | MS.gene43456 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43456.t1 | MTR_4g134290 | 96.484 | 455 | 14 | 2 | 6 | 460 | 8 | 460 | 0.0 | 909 |
| MS.gene43456.t1 | MTR_3g110395 | 55.556 | 441 | 183 | 5 | 26 | 459 | 21 | 455 | 2.08e-178 | 509 |
| MS.gene43456.t1 | MTR_8g102190 | 55.329 | 441 | 183 | 6 | 26 | 458 | 20 | 454 | 2.67e-176 | 503 |
| MS.gene43456.t1 | MTR_6g090130 | 55.556 | 441 | 183 | 5 | 26 | 459 | 17 | 451 | 3.32e-175 | 501 |
| MS.gene43456.t1 | MTR_1g090300 | 54.072 | 442 | 190 | 5 | 26 | 460 | 87 | 522 | 8.33e-174 | 499 |
| MS.gene43456.t1 | MTR_2g100710 | 53.362 | 461 | 196 | 7 | 6 | 458 | 4 | 453 | 8.20e-171 | 488 |
| MS.gene43456.t1 | MTR_8g102190 | 54.722 | 360 | 149 | 6 | 26 | 377 | 20 | 373 | 2.14e-138 | 402 |
| MS.gene43456.t1 | MTR_8g102190 | 56.268 | 343 | 137 | 5 | 26 | 360 | 20 | 357 | 8.42e-137 | 399 |
| MS.gene43456.t1 | MTR_2g100710 | 54.821 | 363 | 147 | 6 | 6 | 360 | 4 | 357 | 5.19e-133 | 389 |
| MS.gene43456.t1 | MTR_8g069040 | 48.549 | 379 | 187 | 4 | 80 | 458 | 159 | 529 | 1.50e-120 | 362 |
| MS.gene43456.t1 | MTR_5g032570 | 45.646 | 379 | 198 | 4 | 80 | 458 | 163 | 533 | 7.66e-115 | 348 |
| MS.gene43456.t1 | MTR_2g100670 | 47.253 | 91 | 33 | 2 | 272 | 361 | 32 | 108 | 7.49e-17 | 82.8 |
| MS.gene43456.t1 | MTR_2g066850 | 51.351 | 74 | 35 | 1 | 170 | 243 | 389 | 461 | 3.38e-13 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43456.t1 | AT5G47810 | 75.737 | 441 | 89 | 5 | 26 | 457 | 7 | 438 | 0.0 | 679 |
| MS.gene43456.t1 | AT4G32840 | 55.682 | 440 | 179 | 6 | 26 | 458 | 21 | 451 | 7.44e-175 | 498 |
| MS.gene43456.t1 | AT4G26270 | 55.227 | 440 | 183 | 5 | 26 | 458 | 20 | 452 | 2.03e-174 | 498 |
| MS.gene43456.t1 | AT5G61580 | 54.091 | 440 | 189 | 5 | 26 | 458 | 71 | 504 | 1.04e-172 | 495 |
| MS.gene43456.t1 | AT5G56630 | 55.227 | 440 | 182 | 6 | 26 | 458 | 20 | 451 | 1.03e-171 | 491 |
| MS.gene43456.t1 | AT5G61580 | 54.091 | 440 | 188 | 6 | 26 | 458 | 71 | 503 | 6.71e-171 | 491 |
| MS.gene43456.t1 | AT4G29220 | 55.180 | 444 | 179 | 7 | 26 | 459 | 21 | 454 | 5.03e-169 | 484 |
| MS.gene43456.t1 | AT2G22480 | 47.906 | 382 | 185 | 5 | 80 | 458 | 167 | 537 | 4.39e-121 | 364 |
| MS.gene43456.t1 | AT4G04040 | 27.027 | 296 | 170 | 14 | 93 | 361 | 98 | 374 | 3.12e-12 | 68.9 |
| MS.gene43456.t1 | AT1G12000 | 26.131 | 199 | 133 | 4 | 93 | 282 | 96 | 289 | 3.54e-12 | 68.9 |
Find 114 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGATTGAAGCCTTGATTT+TGG | 0.165329 | 8.4:-502569 | None:intergenic |
| GACCAACGACTGAAGGAAAA+TGG | 0.215756 | 8.4:+503551 | MS.gene43456:CDS |
| GAGAGCTTGTTGTTGGTCTT+TGG | 0.225491 | 8.4:+502364 | MS.gene43456:CDS |
| GGAATAATCGACAGATCTTT+TGG | 0.247415 | 8.4:+503311 | MS.gene43456:CDS |
| AGAGAAAACGAGGTCGTTTA+AGG | 0.268173 | 8.4:-502217 | None:intergenic |
| AGAGCTTGTTGTTGGTCTTT+GGG | 0.275052 | 8.4:+502365 | MS.gene43456:CDS |
| GGGTTTAGATCAAGTGGATT+TGG | 0.287362 | 8.4:-502156 | None:intergenic |
| CGTCAACAGGTGTACATTAT+AGG | 0.310047 | 8.4:+503182 | MS.gene43456:intron |
| TATGCATAATTGCCATTAAT+AGG | 0.315023 | 8.4:-503881 | None:intergenic |
| ACTCCAACATCTAAGAAAAC+TGG | 0.333926 | 8.4:-503665 | None:intergenic |
| GGATATACTGGATTTGTTGC+TGG | 0.335094 | 8.4:+503857 | MS.gene43456:CDS |
| TTTGTTGCTGGTCCTATTAA+TGG | 0.347699 | 8.4:+503869 | MS.gene43456:CDS |
| GATGTAGAAGTGTTGGAGTT+GGG | 0.350430 | 8.4:-502193 | None:intergenic |
| TTAATACAAAAGATCATAAT+TGG | 0.352372 | 8.4:+503942 | MS.gene43456:CDS |
| TGTCTAGCTCTTCAGAAAAT+CGG | 0.360046 | 8.4:-503993 | None:intergenic |
| GGTTTAGATCAAGTGGATTT+GGG | 0.366705 | 8.4:-502155 | None:intergenic |
| CTCTGCAATTCATGGTGTTA+TGG | 0.369770 | 8.4:+503832 | MS.gene43456:CDS |
| TTGGTCTTTGGGATCTCTAC+GGG | 0.382473 | 8.4:+502376 | MS.gene43456:CDS |
| CTTCAGAAAATCGGGTTGAT+TGG | 0.401398 | 8.4:-503984 | None:intergenic |
| ATGTAGAAGTGTTGGAGTTG+GGG | 0.402048 | 8.4:-502192 | None:intergenic |
| AGCTGAAGAAATGGTGGGAC+AGG | 0.403942 | 8.4:+503702 | MS.gene43456:CDS |
| AAACTGAATGTTGCAGTTGT+TGG | 0.405610 | 8.4:+503260 | MS.gene43456:CDS |
| GTTATTAGAGAGCTTGTTGT+TGG | 0.416848 | 8.4:+502357 | MS.gene43456:CDS |
| TGCCAGTGGTGAACAATACT+AGG | 0.423482 | 8.4:-502477 | None:intergenic |
| CTGTTCTTGGTATTATATCC+TGG | 0.424765 | 8.4:-503607 | None:intergenic |
| TTGGCACACTCTGCAATTCA+TGG | 0.425156 | 8.4:+503824 | MS.gene43456:CDS |
| TAATTTGTATTGTACACTCT+TGG | 0.431844 | 8.4:+503805 | MS.gene43456:CDS |
| ATAATTGTGTTACATCTTCA+AGG | 0.436653 | 8.4:-502068 | None:intergenic |
| GGTGTTATGGCTGGATATAC+TGG | 0.436710 | 8.4:+503845 | MS.gene43456:CDS |
| ATTTCAAACAGCAGTTGAAA+TGG | 0.436991 | 8.4:+503334 | MS.gene43456:CDS |
| CTCTTCTTCTACTCAACCGT+TGG | 0.438008 | 8.4:+502443 | MS.gene43456:CDS |
| ATTTGGGAAGGTCTTGAGGT+TGG | 0.441059 | 8.4:-502139 | None:intergenic |
| CTTGTAGTTGCCGAGGGTGC+TGG | 0.445579 | 8.4:+503584 | MS.gene43456:CDS |
| CCAAAATCAAGGCTTCAATC+AGG | 0.445999 | 8.4:+502569 | MS.gene43456:CDS |
| GTTGGTCTTTGGGATCTCTA+CGG | 0.457538 | 8.4:+502375 | MS.gene43456:CDS |
| TATAGGCCTTGTGAAGTTGA+TGG | 0.459156 | 8.4:+503409 | MS.gene43456:CDS |
| AAGGAAGAGCGAGATGAATC+TGG | 0.459729 | 8.4:+503638 | MS.gene43456:CDS |
| GTCTAGCTCTTCAGAAAATC+GGG | 0.461245 | 8.4:-503992 | None:intergenic |
| GAGAGTGCAGTTAACGGTAT+AGG | 0.469199 | 8.4:+503392 | MS.gene43456:CDS |
| CTGAAGAACAGTACCACCTT+TGG | 0.476929 | 8.4:-502502 | None:intergenic |
| CAAAAGATCATAATTGGTCA+TGG | 0.484945 | 8.4:+503948 | MS.gene43456:CDS |
| GCAATTCATGGTGTTATGGC+TGG | 0.485776 | 8.4:+503836 | MS.gene43456:CDS |
| GAAGACGCTGTTGCGAGGAC+CGG | 0.491221 | 8.4:-502268 | None:intergenic |
| AGTTGCCGAGGGTGCTGGCC+AGG | 0.491874 | 8.4:+503589 | MS.gene43456:CDS |
| ACCAACGACTGAAGGAAAAT+GGG | 0.493978 | 8.4:+503552 | MS.gene43456:CDS |
| AAGTTGATGGGTCGAAGCAC+AGG | 0.498644 | 8.4:+503422 | MS.gene43456:CDS |
| TGTAGAAGTGTTGGAGTTGG+GGG | 0.499814 | 8.4:-502191 | None:intergenic |
| TAAAGTCAGAGCTGAAGAAA+TGG | 0.504227 | 8.4:+503693 | MS.gene43456:CDS |
| ACATGCGGTGGTCTCTGTCC+TGG | 0.504962 | 8.4:+502324 | MS.gene43456:CDS |
| CTCCAACATCTAAGAAAACT+GGG | 0.507207 | 8.4:-503664 | None:intergenic |
| CTAATAACGGTGTTGAGTCC+AGG | 0.509861 | 8.4:-502342 | None:intergenic |
| TTAAGGTGATGTAGAAGTGT+TGG | 0.514426 | 8.4:-502200 | None:intergenic |
| GTGTACATTATAGGTGGAGA+TGG | 0.515210 | 8.4:+503191 | MS.gene43456:CDS |
| ATAGCAGCTCTTACATCAGA+AGG | 0.525537 | 8.4:-502297 | None:intergenic |
| AATTATCCGTAGCATTTGCA+TGG | 0.527760 | 8.4:-503787 | None:intergenic |
| ACCAAGAACAGAGTCACAAA+AGG | 0.530216 | 8.4:+503619 | MS.gene43456:CDS |
| TAAAACAGTGGATAATGATG+TGG | 0.531127 | 8.4:+503289 | MS.gene43456:CDS |
| GTGGATTTGGGAAGGTCTTG+AGG | 0.531662 | 8.4:-502143 | None:intergenic |
| TATATCCTGGCCAGCACCCT+CGG | 0.533467 | 8.4:-503594 | None:intergenic |
| AGCAATCAGTGCTGCTCATG+TGG | 0.535740 | 8.4:+503364 | MS.gene43456:CDS |
| AACAACAAGCTCTCTAATAA+CGG | 0.535759 | 8.4:-502355 | None:intergenic |
| CGCTTCGCTTATCGCAGCGC+CGG | 0.540203 | 8.4:+502249 | MS.gene43456:CDS |
| AAGTAAGGGTTTAGATCAAG+TGG | 0.541976 | 8.4:-502162 | None:intergenic |
| ACTGTTCTTCAGACTTCTAG+AGG | 0.542115 | 8.4:+502513 | MS.gene43456:CDS |
| GAGGCCGAGAGTGCAGTTAA+CGG | 0.545631 | 8.4:+503386 | MS.gene43456:CDS |
| TGATGTAGAAGTGTTGGAGT+TGG | 0.549753 | 8.4:-502194 | None:intergenic |
| CAATTATGCATACATTCCAC+TGG | 0.555213 | 8.4:+503892 | MS.gene43456:CDS |
| GTTGATGCCATCCAAAATCA+AGG | 0.555592 | 8.4:+502558 | MS.gene43456:CDS |
| TGCAGTCCATGCAAATGCTA+CGG | 0.557769 | 8.4:+503781 | MS.gene43456:CDS |
| TGTTGGAATTCCTAAAACAG+TGG | 0.558287 | 8.4:+503277 | MS.gene43456:CDS |
| TAGATCAAGTGGATTTGGGA+AGG | 0.564879 | 8.4:-502151 | None:intergenic |
| TGCAGTGCTTGTAGTTGCCG+AGG | 0.566674 | 8.4:+503577 | MS.gene43456:CDS |
| ATAGGCCTTGTGAAGTTGAT+GGG | 0.567702 | 8.4:+503410 | MS.gene43456:CDS |
| AAAAGATCATAATTGGTCAT+GGG | 0.567773 | 8.4:+503949 | MS.gene43456:CDS |
| ACTGCACGAATCATGTATGT+AGG | 0.577072 | 8.4:-503764 | None:intergenic |
| ACCCTAGTATTGTTCACCAC+TGG | 0.578946 | 8.4:+502475 | MS.gene43456:CDS |
| TGGTGGGACAGGGACCATCC+TGG | 0.579487 | 8.4:+503713 | MS.gene43456:CDS |
| GTAGAAGTGTTGGAGTTGGG+GGG | 0.580821 | 8.4:-502190 | None:intergenic |
| GTTTCTTGACCAACGACTGA+AGG | 0.583428 | 8.4:+503544 | MS.gene43456:CDS |
| AGTCAGAGCTGAAGAAATGG+TGG | 0.587927 | 8.4:+503696 | MS.gene43456:CDS |
| GGTATCACCGCTGGTTACAG+AGG | 0.588696 | 8.4:+502414 | MS.gene43456:CDS |
| GCAGTGCTTGTAGTTGCCGA+GGG | 0.592925 | 8.4:+503578 | MS.gene43456:CDS |
| GGTGGAGATGGGACTATGCG+AGG | 0.594506 | 8.4:+503203 | MS.gene43456:CDS |
| TCTTGAGGTTGGAGATGTAG+TGG | 0.595437 | 8.4:-502128 | None:intergenic |
| GTGGAGATGGGACTATGCGA+GGG | 0.599425 | 8.4:+503204 | MS.gene43456:CDS |
| GTTCTTCAGACTTCTAGAGG+TGG | 0.602049 | 8.4:+502516 | MS.gene43456:CDS |
| TTTACTTGGAAGGAAAAGGA+GGG | 0.603614 | 8.4:+503513 | MS.gene43456:CDS |
| GCTGAAGAAATGGTGGGACA+GGG | 0.604170 | 8.4:+503703 | MS.gene43456:CDS |
| AAAACAGTGGATAATGATGT+GGG | 0.607749 | 8.4:+503290 | MS.gene43456:CDS |
| TGTACATTATAGGTGGAGAT+GGG | 0.608105 | 8.4:+503192 | MS.gene43456:CDS |
| CACCACTGGCATACCAAAGG+TGG | 0.610272 | 8.4:+502489 | MS.gene43456:CDS |
| TTGACTGTAAATAGCTCACC+AGG | 0.616449 | 8.4:-503731 | None:intergenic |
| CAACAGGTGTACATTATAGG+TGG | 0.618654 | 8.4:+503185 | MS.gene43456:intron |
| GCCAGTGGTGAACAATACTA+GGG | 0.620862 | 8.4:-502476 | None:intergenic |
| TTGAAGAAGACGCTGTTGCG+AGG | 0.623813 | 8.4:-502273 | None:intergenic |
| AATCAGTGCTGCTCATGTGG+AGG | 0.626587 | 8.4:+503367 | MS.gene43456:CDS |
| TATACCGTTAACTGCACTCT+CGG | 0.626708 | 8.4:-503390 | None:intergenic |
| TTCGACCCATCAACTTCACA+AGG | 0.629286 | 8.4:-503415 | None:intergenic |
| CTAGGGTTGAGCTGAACCAA+CGG | 0.632100 | 8.4:-502459 | None:intergenic |
| GAGATGTAGTGGTTGAGATG+AGG | 0.632753 | 8.4:-502117 | None:intergenic |
| CTGTAAATAGCTCACCAGGA+TGG | 0.636294 | 8.4:-503727 | None:intergenic |
| GCACATGCTACATCTTCCAG+TGG | 0.639068 | 8.4:-503908 | None:intergenic |
| GCTGCTATTGTAACATGCGG+TGG | 0.641272 | 8.4:+502312 | MS.gene43456:CDS |
| GTTCACCACTGGCATACCAA+AGG | 0.645345 | 8.4:+502486 | MS.gene43456:CDS |
| GTCAGAGCTGAAGAAATGGT+GGG | 0.650633 | 8.4:+503697 | MS.gene43456:CDS |
| TAGCAGCTCTTACATCAGAA+GGG | 0.652881 | 8.4:-502296 | None:intergenic |
| TGGTCTTTGGGATCTCTACG+GGG | 0.653652 | 8.4:+502377 | MS.gene43456:CDS |
| TTAGGCAGCAATCAACGTCA+CGG | 0.665680 | 8.4:-503475 | None:intergenic |
| TACCACCTTTGGTATGCCAG+TGG | 0.676671 | 8.4:-502491 | None:intergenic |
| TGGAGATGGGACTATGCGAG+GGG | 0.690556 | 8.4:+503205 | MS.gene43456:CDS |
| GTAAAAGCCTCTGTAACCAG+CGG | 0.697919 | 8.4:-502421 | None:intergenic |
| GCTGCGATAAGCGAAGCGTG+TGG | 0.702419 | 8.4:-502244 | None:intergenic |
| GTGTGGAGTGAGAGAAAACG+AGG | 0.714528 | 8.4:-502227 | None:intergenic |
| AGAGCTGCTATTGTAACATG+CGG | 0.761108 | 8.4:+502309 | MS.gene43456:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACCAAAATATAAAATGAA+AGG | + | chr8.4:502659-502678 | MS.gene43456:intron | 15.0% |
| !! | TTAATACAAAAGATCATAAT+TGG | + | chr8.4:503942-503961 | MS.gene43456:CDS | 15.0% |
| !! | AAGATTCAAGTAAATTGTAA+TGG | - | chr8.4:502913-502932 | None:intergenic | 20.0% |
| !!! | AAGCCTTTCATTTTATATTT+TGG | - | chr8.4:502665-502684 | None:intergenic | 20.0% |
| !!! | TATGATCTTTTGTATTAACT+GGG | - | chr8.4:503940-503959 | None:intergenic | 20.0% |
| !!! | TTATGATCTTTTGTATTAAC+TGG | - | chr8.4:503941-503960 | None:intergenic | 20.0% |
| ! | AAAAGATCATAATTGGTCAT+GGG | + | chr8.4:503949-503968 | MS.gene43456:CDS | 25.0% |
| ! | ATAATTGTGTTACATCTTCA+AGG | - | chr8.4:502071-502090 | None:intergenic | 25.0% |
| ! | ATAGTTAAGGTGAAAATACA+AGG | - | chr8.4:502964-502983 | None:intergenic | 25.0% |
| ! | TAATTTGGAAGAAACACATA+AGG | - | chr8.4:503053-503072 | None:intergenic | 25.0% |
| ! | TATGCATAATTGCCATTAAT+AGG | - | chr8.4:503884-503903 | None:intergenic | 25.0% |
| !! | ATTTAACTTTATTGCTGCAA+AGG | - | chr8.4:502784-502803 | None:intergenic | 25.0% |
| !! | GAATTTGAGATGAATAGTTA+AGG | - | chr8.4:502977-502996 | None:intergenic | 25.0% |
| !! | TAATTTGTATTGTACACTCT+TGG | + | chr8.4:503805-503824 | MS.gene43456:CDS | 25.0% |
| !! | TTTAACTTTATTGCTGCAAA+GGG | - | chr8.4:502783-502802 | None:intergenic | 25.0% |
| AAAACAGTGGATAATGATGT+GGG | + | chr8.4:503290-503309 | MS.gene43456:CDS | 30.0% | |
| AACAACAAGCTCTCTAATAA+CGG | - | chr8.4:502358-502377 | None:intergenic | 30.0% | |
| AATAAATAAGAGCTACTCGA+TGG | + | chr8.4:502845-502864 | MS.gene43456:intron | 30.0% | |
| AATTCAACAATTCTTCTGCT+TGG | + | chr8.4:502801-502820 | MS.gene43456:intron | 30.0% | |
| ATTTCAAACAGCAGTTGAAA+TGG | + | chr8.4:503334-503353 | MS.gene43456:CDS | 30.0% | |
| CAAAAGATCATAATTGGTCA+TGG | + | chr8.4:503948-503967 | MS.gene43456:CDS | 30.0% | |
| GTTATAAGATGAGCAATGAA+AGG | - | chr8.4:502738-502757 | None:intergenic | 30.0% | |
| TAAAACAGTGGATAATGATG+TGG | + | chr8.4:503289-503308 | MS.gene43456:CDS | 30.0% | |
| TTAACTTTATTGCTGCAAAG+GGG | - | chr8.4:502782-502801 | None:intergenic | 30.0% | |
| ! | AAAAATCTAGTTCAGGGATT+AGG | - | chr8.4:503496-503515 | None:intergenic | 30.0% |
| ! | ACATCATTATCCACTGTTTT+AGG | - | chr8.4:503290-503309 | None:intergenic | 30.0% |
| ! | CCAAGTAAAAATCTAGTTCA+GGG | - | chr8.4:503502-503521 | None:intergenic | 30.0% |
| ! | GAACTAGATTTTTACTTGGA+AGG | + | chr8.4:503503-503522 | MS.gene43456:CDS | 30.0% |
| ! | GATTTTTACTTGGAAGGAAA+AGG | + | chr8.4:503509-503528 | MS.gene43456:CDS | 30.0% |
| ! | TCCAAGTAAAAATCTAGTTC+AGG | - | chr8.4:503503-503522 | None:intergenic | 30.0% |
| !!! | AGGAAGATCTTTTAGCTTAA+TGG | - | chr8.4:502100-502119 | None:intergenic | 30.0% |
| !!! | GGAAGATCTTTTAGCTTAAT+GGG | - | chr8.4:502099-502118 | None:intergenic | 30.0% |
| AAACTGAATGTTGCAGTTGT+TGG | + | chr8.4:503260-503279 | MS.gene43456:CDS | 35.0% | |
| AAGTAAGGGTTTAGATCAAG+TGG | - | chr8.4:502165-502184 | None:intergenic | 35.0% | |
| AATTATCCGTAGCATTTGCA+TGG | - | chr8.4:503790-503809 | None:intergenic | 35.0% | |
| ACTCCAACATCTAAGAAAAC+TGG | - | chr8.4:503668-503687 | None:intergenic | 35.0% | |
| CAATTATGCATACATTCCAC+TGG | + | chr8.4:503892-503911 | MS.gene43456:CDS | 35.0% | |
| CTCCAACATCTAAGAAAACT+GGG | - | chr8.4:503667-503686 | None:intergenic | 35.0% | |
| CTGTTCTTGGTATTATATCC+TGG | - | chr8.4:503610-503629 | None:intergenic | 35.0% | |
| GTGTTTCTTCCAAATTAAGC+TGG | + | chr8.4:503056-503075 | MS.gene43456:intron | 35.0% | |
| TAAAGTCAGAGCTGAAGAAA+TGG | + | chr8.4:503693-503712 | MS.gene43456:CDS | 35.0% | |
| TGTACATTATAGGTGGAGAT+GGG | + | chr8.4:503192-503211 | MS.gene43456:CDS | 35.0% | |
| TGTTGGAATTCCTAAAACAG+TGG | + | chr8.4:503277-503296 | MS.gene43456:CDS | 35.0% | |
| TTGGAAGAAACACATAAGGA+AGG | - | chr8.4:503049-503068 | None:intergenic | 35.0% | |
| TTTACTTGGAAGGAAAAGGA+GGG | + | chr8.4:503513-503532 | MS.gene43456:CDS | 35.0% | |
| TTTGTTGCTGGTCCTATTAA+TGG | + | chr8.4:503869-503888 | MS.gene43456:CDS | 35.0% | |
| ! | AACCCAGTTTTCTTAGATGT+TGG | + | chr8.4:503662-503681 | MS.gene43456:CDS | 35.0% |
| ! | ATTGAAGCCTTGATTTTGGA+TGG | - | chr8.4:502568-502587 | None:intergenic | 35.0% |
| ! | ATTTTCCAGCCAGCTTAATT+TGG | - | chr8.4:503068-503087 | None:intergenic | 35.0% |
| ! | CCCTGAACTAGATTTTTACT+TGG | + | chr8.4:503499-503518 | MS.gene43456:CDS | 35.0% |
| ! | GGAATAATCGACAGATCTTT+TGG | + | chr8.4:503311-503330 | MS.gene43456:CDS | 35.0% |
| ! | GGTTTAGATCAAGTGGATTT+GGG | - | chr8.4:502158-502177 | None:intergenic | 35.0% |
| ! | TTAAGGTGATGTAGAAGTGT+TGG | - | chr8.4:502203-502222 | None:intergenic | 35.0% |
| ! | TTTTACTTGGAAGGAAAAGG+AGG | + | chr8.4:503512-503531 | MS.gene43456:CDS | 35.0% |
| ! | TTTTCTTAGATGTTGGAGTG+TGG | + | chr8.4:503669-503688 | MS.gene43456:CDS | 35.0% |
| !! | GTTATTAGAGAGCTTGTTGT+TGG | + | chr8.4:502357-502376 | MS.gene43456:CDS | 35.0% |
| AAGAGCTACTCGATGGAATA+TGG | + | chr8.4:502852-502871 | MS.gene43456:intron | 40.0% | |
| ACCAACGACTGAAGGAAAAT+GGG | + | chr8.4:503552-503571 | MS.gene43456:CDS | 40.0% | |
| ACCAAGAACAGAGTCACAAA+AGG | + | chr8.4:503619-503638 | MS.gene43456:CDS | 40.0% | |
| ACTGCACGAATCATGTATGT+AGG | - | chr8.4:503767-503786 | None:intergenic | 40.0% | |
| ACTGTTCTTCAGACTTCTAG+AGG | + | chr8.4:502513-502532 | MS.gene43456:CDS | 40.0% | |
| AGAGAAAACGAGGTCGTTTA+AGG | - | chr8.4:502220-502239 | None:intergenic | 40.0% | |
| AGAGCTGCTATTGTAACATG+CGG | + | chr8.4:502309-502328 | MS.gene43456:CDS | 40.0% | |
| ATAGCAGCTCTTACATCAGA+AGG | - | chr8.4:502300-502319 | None:intergenic | 40.0% | |
| CAACAGGTGTACATTATAGG+TGG | + | chr8.4:503185-503204 | MS.gene43456:intron | 40.0% | |
| CCAAAATCAAGGCTTCAATC+AGG | + | chr8.4:502569-502588 | MS.gene43456:CDS | 40.0% | |
| CGTCAACAGGTGTACATTAT+AGG | + | chr8.4:503182-503201 | MS.gene43456:intron | 40.0% | |
| CTTGTCCTGTAAAGTTTAGC+AGG | + | chr8.4:503000-503019 | MS.gene43456:intron | 40.0% | |
| GGAGTGATATCTGAATTGCA+CGG | - | chr8.4:503028-503047 | None:intergenic | 40.0% | |
| GTGTACATTATAGGTGGAGA+TGG | + | chr8.4:503191-503210 | MS.gene43456:CDS | 40.0% | |
| GTTGATGCCATCCAAAATCA+AGG | + | chr8.4:502558-502577 | MS.gene43456:CDS | 40.0% | |
| TAGCAGCTCTTACATCAGAA+GGG | - | chr8.4:502299-502318 | None:intergenic | 40.0% | |
| TATACCGTTAACTGCACTCT+CGG | - | chr8.4:503393-503412 | None:intergenic | 40.0% | |
| TTCTTCCAAATTAAGCTGGC+TGG | + | chr8.4:503060-503079 | MS.gene43456:intron | 40.0% | |
| TTGACTGTAAATAGCTCACC+AGG | - | chr8.4:503734-503753 | None:intergenic | 40.0% | |
| ! | ATAGGCCTTGTGAAGTTGAT+GGG | + | chr8.4:503410-503429 | MS.gene43456:CDS | 40.0% |
| ! | CCTGATTGAAGCCTTGATTT+TGG | - | chr8.4:502572-502591 | None:intergenic | 40.0% |
| ! | CTCTGCAATTCATGGTGTTA+TGG | + | chr8.4:503832-503851 | MS.gene43456:CDS | 40.0% |
| ! | GGGTTTAGATCAAGTGGATT+TGG | - | chr8.4:502159-502178 | None:intergenic | 40.0% |
| ! | TAGATCAAGTGGATTTGGGA+AGG | - | chr8.4:502154-502173 | None:intergenic | 40.0% |
| ! | TATAGGCCTTGTGAAGTTGA+TGG | + | chr8.4:503409-503428 | MS.gene43456:CDS | 40.0% |
| ! | TCCTTTTGTGACTCTGTTCT+TGG | - | chr8.4:503623-503642 | None:intergenic | 40.0% |
| !! | AGAGCTTGTTGTTGGTCTTT+GGG | + | chr8.4:502365-502384 | MS.gene43456:CDS | 40.0% |
| !! | ATGTAGAAGTGTTGGAGTTG+GGG | - | chr8.4:502195-502214 | None:intergenic | 40.0% |
| !! | CACTCGGTTGATAGATAGAT+AGG | - | chr8.4:502701-502720 | None:intergenic | 40.0% |
| !! | CGGTTGATAGATAGATAGGA+AGG | - | chr8.4:502697-502716 | None:intergenic | 40.0% |
| !! | CTTCAGAAAATCGGGTTGAT+TGG | - | chr8.4:503987-504006 | None:intergenic | 40.0% |
| !! | GATGTAGAAGTGTTGGAGTT+GGG | - | chr8.4:502196-502215 | None:intergenic | 40.0% |
| !! | GGATATACTGGATTTGTTGC+TGG | + | chr8.4:503857-503876 | MS.gene43456:CDS | 40.0% |
| !! | TGATGTAGAAGTGTTGGAGT+TGG | - | chr8.4:502197-502216 | None:intergenic | 40.0% |
| AAGGAAGAGCGAGATGAATC+TGG | + | chr8.4:503638-503657 | MS.gene43456:CDS | 45.0% | |
| ACCCTAGTATTGTTCACCAC+TGG | + | chr8.4:502475-502494 | MS.gene43456:CDS | 45.0% | |
| AGTCAGAGCTGAAGAAATGG+TGG | + | chr8.4:503696-503715 | MS.gene43456:CDS | 45.0% | |
| ATCATCCTGTTCTCGTCAAC+AGG | + | chr8.4:503169-503188 | MS.gene43456:intron | 45.0% | |
| ATTTGGGAAGGTCTTGAGGT+TGG | - | chr8.4:502142-502161 | None:intergenic | 45.0% | |
| CGGTTCCTGCTAAACTTTAC+AGG | - | chr8.4:503008-503027 | None:intergenic | 45.0% | |
| CTCTTCTTCTACTCAACCGT+TGG | + | chr8.4:502443-502462 | MS.gene43456:CDS | 45.0% | |
| CTGAAGAACAGTACCACCTT+TGG | - | chr8.4:502505-502524 | None:intergenic | 45.0% | |
| CTGTAAATAGCTCACCAGGA+TGG | - | chr8.4:503730-503749 | None:intergenic | 45.0% | |
| GACCAACGACTGAAGGAAAA+TGG | + | chr8.4:503551-503570 | MS.gene43456:CDS | 45.0% | |
| GAGATGTAGTGGTTGAGATG+AGG | - | chr8.4:502120-502139 | None:intergenic | 45.0% | |
| GCCAGTGGTGAACAATACTA+GGG | - | chr8.4:502479-502498 | None:intergenic | 45.0% | |
| GCGAAACTCACAACACAAAC+TGG | + | chr8.4:502607-502626 | MS.gene43456:intron | 45.0% | |
| GGCATCAGCAAAGAATCACT+CGG | - | chr8.4:502717-502736 | None:intergenic | 45.0% | |
| GTAAAAGCCTCTGTAACCAG+CGG | - | chr8.4:502424-502443 | None:intergenic | 45.0% | |
| GTCAGAGCTGAAGAAATGGT+GGG | + | chr8.4:503697-503716 | MS.gene43456:CDS | 45.0% | |
| GTTTCTTGACCAACGACTGA+AGG | + | chr8.4:503544-503563 | MS.gene43456:CDS | 45.0% | |
| TCTTGAGGTTGGAGATGTAG+TGG | - | chr8.4:502131-502150 | None:intergenic | 45.0% | |
| TGCAGTCCATGCAAATGCTA+CGG | + | chr8.4:503781-503800 | MS.gene43456:CDS | 45.0% | |
| TGCCAGTGGTGAACAATACT+AGG | - | chr8.4:502480-502499 | None:intergenic | 45.0% | |
| TTAGGCAGCAATCAACGTCA+CGG | - | chr8.4:503478-503497 | None:intergenic | 45.0% | |
| TTCGACCCATCAACTTCACA+AGG | - | chr8.4:503418-503437 | None:intergenic | 45.0% | |
| TTGGCACACTCTGCAATTCA+TGG | + | chr8.4:503824-503843 | MS.gene43456:CDS | 45.0% | |
| ! | CTAATAACGGTGTTGAGTCC+AGG | - | chr8.4:502345-502364 | None:intergenic | 45.0% |
| ! | GAGAGTGCAGTTAACGGTAT+AGG | + | chr8.4:503392-503411 | MS.gene43456:CDS | 45.0% |
| ! | GGTGTTATGGCTGGATATAC+TGG | + | chr8.4:503845-503864 | MS.gene43456:CDS | 45.0% |
| ! | GTTCTTCAGACTTCTAGAGG+TGG | + | chr8.4:502516-502535 | MS.gene43456:CDS | 45.0% |
| ! | TACGGGGTTCGACAGATTTT+TGG | + | chr8.4:502393-502412 | MS.gene43456:CDS | 45.0% |
| !! | GAGAGCTTGTTGTTGGTCTT+TGG | + | chr8.4:502364-502383 | MS.gene43456:CDS | 45.0% |
| !! | GCAATTCATGGTGTTATGGC+TGG | + | chr8.4:503836-503855 | MS.gene43456:CDS | 45.0% |
| !! | GTTGGTCTTTGGGATCTCTA+CGG | + | chr8.4:502375-502394 | MS.gene43456:CDS | 45.0% |
| !! | TGTAGAAGTGTTGGAGTTGG+GGG | - | chr8.4:502194-502213 | None:intergenic | 45.0% |
| !! | TTGGTCTTTGGGATCTCTAC+GGG | + | chr8.4:502376-502395 | MS.gene43456:CDS | 45.0% |
| !!! | CAGATTTTTGGTATCACCGC+TGG | + | chr8.4:502405-502424 | MS.gene43456:CDS | 45.0% |
| ATTGCTGCAAAGGGGAAGAG+AGG | - | chr8.4:502774-502793 | None:intergenic | 50.0% | |
| CTAGGGTTGAGCTGAACCAA+CGG | - | chr8.4:502462-502481 | None:intergenic | 50.0% | |
| GCACATGCTACATCTTCCAG+TGG | - | chr8.4:503911-503930 | None:intergenic | 50.0% | |
| GCTGCTATTGTAACATGCGG+TGG | + | chr8.4:502312-502331 | MS.gene43456:CDS | 50.0% | |
| GTACACCTGTTGACGAGAAC+AGG | - | chr8.4:503177-503196 | None:intergenic | 50.0% | |
| GTGGATTTGGGAAGGTCTTG+AGG | - | chr8.4:502146-502165 | None:intergenic | 50.0% | |
| GTGTGGAGTGAGAGAAAACG+AGG | - | chr8.4:502230-502249 | None:intergenic | 50.0% | |
| GTTCACCACTGGCATACCAA+AGG | + | chr8.4:502486-502505 | MS.gene43456:CDS | 50.0% | |
| TACCACCTTTGGTATGCCAG+TGG | - | chr8.4:502494-502513 | None:intergenic | 50.0% | |
| TTGAAGAAGACGCTGTTGCG+AGG | - | chr8.4:502276-502295 | None:intergenic | 50.0% | |
| ! | AATCAGTGCTGCTCATGTGG+AGG | + | chr8.4:503367-503386 | MS.gene43456:CDS | 50.0% |
| ! | AGCAATCAGTGCTGCTCATG+TGG | + | chr8.4:503364-503383 | MS.gene43456:CDS | 50.0% |
| ! | AGCTGAAGAAATGGTGGGAC+AGG | + | chr8.4:503702-503721 | MS.gene43456:CDS | 50.0% |
| ! | GCCCATTTTCCTTCAGTCGT+TGG | - | chr8.4:503556-503575 | None:intergenic | 50.0% |
| ! | GCTGAAGAAATGGTGGGACA+GGG | + | chr8.4:503703-503722 | MS.gene43456:CDS | 50.0% |
| !! | AAGTTGATGGGTCGAAGCAC+AGG | + | chr8.4:503422-503441 | MS.gene43456:CDS | 50.0% |
| !! | GTAGAAGTGTTGGAGTTGGG+GGG | - | chr8.4:502193-502212 | None:intergenic | 50.0% |
| !! | TGGTCTTTGGGATCTCTACG+GGG | + | chr8.4:502377-502396 | MS.gene43456:CDS | 50.0% |
| CACCACTGGCATACCAAAGG+TGG | + | chr8.4:502489-502508 | MS.gene43456:CDS | 55.0% | |
| GCAGTGCTTGTAGTTGCCGA+GGG | + | chr8.4:503578-503597 | MS.gene43456:CDS | 55.0% | |
| GTGGAGATGGGACTATGCGA+GGG | + | chr8.4:503204-503223 | MS.gene43456:CDS | 55.0% | |
| TATATCCTGGCCAGCACCCT+CGG | - | chr8.4:503597-503616 | None:intergenic | 55.0% | |
| TGCAGTGCTTGTAGTTGCCG+AGG | + | chr8.4:503577-503596 | MS.gene43456:CDS | 55.0% | |
| TGGAGATGGGACTATGCGAG+GGG | + | chr8.4:503205-503224 | MS.gene43456:CDS | 55.0% | |
| ! | AGTTGGGGGGTGTGGAAGTA+AGG | - | chr8.4:502180-502199 | None:intergenic | 55.0% |
| ! | GAGGCCGAGAGTGCAGTTAA+CGG | + | chr8.4:503386-503405 | MS.gene43456:CDS | 55.0% |
| ! | GGTATCACCGCTGGTTACAG+AGG | + | chr8.4:502414-502433 | MS.gene43456:CDS | 55.0% |
| ! | GTTGGGGGGTGTGGAAGTAA+GGG | - | chr8.4:502179-502198 | None:intergenic | 55.0% |
| ACATGCGGTGGTCTCTGTCC+TGG | + | chr8.4:502324-502343 | MS.gene43456:CDS | 60.0% | |
| GAAGACGCTGTTGCGAGGAC+CGG | - | chr8.4:502271-502290 | None:intergenic | 60.0% | |
| GCTGCAAAGGGGAAGAGAGG+TGG | - | chr8.4:502771-502790 | None:intergenic | 60.0% | |
| GCTGCGATAAGCGAAGCGTG+TGG | - | chr8.4:502247-502266 | None:intergenic | 60.0% | |
| GGTGGAGATGGGACTATGCG+AGG | + | chr8.4:503203-503222 | MS.gene43456:CDS | 60.0% | |
| ! | AGTGTTGGAGTTGGGGGGTG+TGG | - | chr8.4:502188-502207 | None:intergenic | 60.0% |
| ! | CTTGTAGTTGCCGAGGGTGC+TGG | + | chr8.4:503584-503603 | MS.gene43456:CDS | 60.0% |
| CGCTTCGCTTATCGCAGCGC+CGG | + | chr8.4:502249-502268 | MS.gene43456:CDS | 65.0% | |
| TGGTGGGACAGGGACCATCC+TGG | + | chr8.4:503713-503732 | MS.gene43456:CDS | 65.0% | |
| !! | AGTTGCCGAGGGTGCTGGCC+AGG | + | chr8.4:503589-503608 | MS.gene43456:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 502030 | 504012 | 502030 | ID=MS.gene43456 |
| chr8.4 | mRNA | 502030 | 504012 | 502030 | ID=MS.gene43456.t1;Parent=MS.gene43456 |
| chr8.4 | exon | 502030 | 502590 | 502030 | ID=MS.gene43456.t1.exon1;Parent=MS.gene43456.t1 |
| chr8.4 | CDS | 502030 | 502590 | 502030 | ID=cds.MS.gene43456.t1;Parent=MS.gene43456.t1 |
| chr8.4 | exon | 503191 | 504012 | 503191 | ID=MS.gene43456.t1.exon2;Parent=MS.gene43456.t1 |
| chr8.4 | CDS | 503191 | 504012 | 503191 | ID=cds.MS.gene43456.t1;Parent=MS.gene43456.t1 |
| Gene Sequence |
| Protein sequence |
