Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43545.t1 | XP_003611587.1 | 100 | 276 | 0 | 0 | 1 | 276 | 1 | 276 | 3.80E-147 | 530.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43545.t1 | Q9FJX3 | 66.3 | 276 | 93 | 0 | 1 | 276 | 1 | 276 | 6.2e-106 | 385.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43545.t1 | G7K2J4 | 100.0 | 276 | 0 | 0 | 1 | 276 | 1 | 276 | 2.7e-147 | 530.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene021652 | MS.gene43545 | PPI |
| MS.gene43545 | MS.gene20480 | PPI |
| MS.gene43545 | MS.gene79650 | PPI |
| MS.gene43545 | MS.gene030985 | PPI |
| MS.gene74761 | MS.gene43545 | PPI |
| MS.gene043298 | MS.gene43545 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43545.t1 | MTR_5g015580 | 100.000 | 276 | 0 | 0 | 1 | 276 | 1 | 276 | 0.0 | 546 |
| MS.gene43545.t1 | MTR_1g018205 | 56.727 | 275 | 119 | 0 | 2 | 276 | 3 | 277 | 5.49e-111 | 322 |
| MS.gene43545.t1 | MTR_6g011390 | 49.281 | 278 | 139 | 1 | 1 | 276 | 1 | 278 | 2.21e-92 | 275 |
| MS.gene43545.t1 | MTR_7g009330 | 50.182 | 275 | 137 | 0 | 2 | 276 | 3 | 277 | 4.15e-91 | 271 |
| MS.gene43545.t1 | MTR_8g469150 | 41.304 | 276 | 162 | 0 | 1 | 276 | 1 | 276 | 2.64e-76 | 233 |
| MS.gene43545.t1 | MTR_4g128300 | 42.652 | 279 | 157 | 2 | 1 | 276 | 1 | 279 | 1.45e-74 | 229 |
| MS.gene43545.t1 | MTR_8g469150 | 40.075 | 267 | 160 | 0 | 1 | 267 | 1 | 267 | 8.15e-71 | 219 |
| MS.gene43545.t1 | MTR_4g107840 | 26.148 | 283 | 163 | 5 | 1 | 276 | 1 | 244 | 1.59e-28 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43545.t1 | AT5G67500 | 66.304 | 276 | 93 | 0 | 1 | 276 | 1 | 276 | 3.23e-140 | 395 |
| MS.gene43545.t1 | AT5G67500 | 60.396 | 303 | 93 | 1 | 1 | 276 | 1 | 303 | 2.19e-134 | 382 |
| MS.gene43545.t1 | AT5G67500 | 65.918 | 267 | 91 | 0 | 1 | 267 | 1 | 267 | 4.39e-134 | 381 |
| MS.gene43545.t1 | AT5G15090 | 50.000 | 278 | 133 | 2 | 1 | 276 | 1 | 274 | 9.60e-90 | 268 |
| MS.gene43545.t1 | AT5G15090 | 50.000 | 278 | 133 | 2 | 1 | 276 | 1 | 274 | 9.60e-90 | 268 |
| MS.gene43545.t1 | AT3G01280 | 48.551 | 276 | 142 | 0 | 1 | 276 | 1 | 276 | 5.78e-88 | 263 |
| MS.gene43545.t1 | AT5G57490 | 46.377 | 276 | 146 | 1 | 1 | 276 | 1 | 274 | 1.07e-83 | 252 |
| MS.gene43545.t1 | AT3G49920 | 47.826 | 276 | 94 | 3 | 1 | 276 | 1 | 226 | 3.86e-81 | 244 |
| MS.gene43545.t1 | AT3G49920 | 64.634 | 82 | 29 | 0 | 1 | 82 | 1 | 82 | 1.73e-28 | 106 |
| MS.gene43545.t1 | AT3G49920 | 64.634 | 82 | 29 | 0 | 1 | 82 | 1 | 82 | 1.73e-28 | 106 |
| MS.gene43545.t1 | AT3G49920 | 67.123 | 73 | 24 | 0 | 1 | 73 | 1 | 73 | 3.01e-28 | 104 |
Find 73 sgRNAs with CRISPR-Local
Find 293 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGATTAGTTTCACGAAAT+TGG | 0.171691 | 5.3:-8498329 | MS.gene43545:CDS |
| AAGTCAGTGCTGACTATTTC+TGG | 0.215709 | 5.3:-8497974 | MS.gene43545:CDS |
| TCTTCTTGATTTGGTCTAGA+TGG | 0.272788 | 5.3:+8498152 | None:intergenic |
| CAGCAGCACTCTTCTTGATT+TGG | 0.283867 | 5.3:+8498143 | None:intergenic |
| AAGCTGCCTGATTATAGTTC+TGG | 0.319469 | 5.3:-8498604 | MS.gene43545:CDS |
| AAGAAAGGAGGACTCTCAAC+TGG | 0.374633 | 5.3:-8498833 | MS.gene43545:CDS |
| TCGTCTTTGTGGATGGAAAA+AGG | 0.380002 | 5.3:+8498638 | None:intergenic |
| TCTGATTTGTTGAGAACCTT+CGG | 0.383141 | 5.3:+8498107 | None:intergenic |
| GGTTCTCCAACCCTTGCATT+TGG | 0.392286 | 5.3:-8498403 | MS.gene43545:CDS |
| AATTGAAGCTATCGTCTTTG+TGG | 0.392722 | 5.3:+8498627 | None:intergenic |
| GTGGCAGAAACATCAAAGAT+AGG | 0.400234 | 5.3:+8498430 | None:intergenic |
| CTGATTTGTTGAGAACCTTC+GGG | 0.400674 | 5.3:+8498108 | None:intergenic |
| CCGGGTCTCTACTCTGATAT+CGG | 0.403413 | 5.3:-8502333 | MS.gene43545:CDS |
| CAGTGTAGCGACTGAGGTTA+AGG | 0.410879 | 5.3:+8498462 | None:intergenic |
| GAAATAGTCAGCACTGACTT+TGG | 0.413358 | 5.3:+8497977 | None:intergenic |
| AAATAGTCAGCACTGACTTT+GGG | 0.425846 | 5.3:+8497978 | None:intergenic |
| AGCAATGGCCAACCCAAACT+TGG | 0.435980 | 5.3:+8497919 | None:intergenic |
| CTTGCATTTGGTGCTGAGGC+AGG | 0.440987 | 5.3:-8498391 | MS.gene43545:CDS |
| ACTTCAACTGCTTTGAAGAA+AGG | 0.441282 | 5.3:-8498848 | MS.gene43545:CDS |
| AACAAATCAGAACACTATTA+CGG | 0.464512 | 5.3:-8498095 | MS.gene43545:CDS |
| GTTTCATCTTACAGCACTAC+TGG | 0.464789 | 5.3:-8502172 | MS.gene43545:CDS |
| TCAACAATCAAGGAAAGGTT+GGG | 0.467034 | 5.3:-8498024 | MS.gene43545:CDS |
| GCAGGCTATGATACTAAATC+TGG | 0.479364 | 5.3:-8498373 | MS.gene43545:CDS |
| ATCGAAGATGAGCAAGGGAC+CGG | 0.481251 | 5.3:-8502352 | None:intergenic |
| TCTTGATTTGGTCTAGATGG+TGG | 0.484846 | 5.3:+8498155 | None:intergenic |
| TTTGATGTTTCTGCCACTGT+TGG | 0.487886 | 5.3:-8498424 | MS.gene43545:CDS |
| TGGCAGAAACATCAAAGATA+GGG | 0.491347 | 5.3:+8498431 | None:intergenic |
| AACCCTTGCATTTGGTGCTG+AGG | 0.491987 | 5.3:-8498395 | MS.gene43545:CDS |
| TTCAACAATCAAGGAAAGGT+TGG | 0.493974 | 5.3:-8498025 | MS.gene43545:CDS |
| AGGACTCTCAACTGGGGATG+TGG | 0.494637 | 5.3:-8498825 | MS.gene43545:CDS |
| CTTTCCTATCAGTGGCGACA+AGG | 0.504369 | 5.3:-8498203 | MS.gene43545:intron |
| AAAGCTAGGTTCAACAATCA+AGG | 0.508554 | 5.3:-8498034 | MS.gene43545:CDS |
| CTCTCAACTGGGGATGTGGC+AGG | 0.509688 | 5.3:-8498821 | MS.gene43545:CDS |
| CAAGAAGAGTGCTGCTGTTG+TGG | 0.509776 | 5.3:-8498137 | MS.gene43545:CDS |
| ACCTTGCCAGAACTATAATC+AGG | 0.517672 | 5.3:+8498598 | None:intergenic |
| AGTAGTGCTGTAAGATGAAA+CGG | 0.520738 | 5.3:+8502174 | None:intergenic |
| TGATTTGGTCTAGATGGTGG+AGG | 0.521733 | 5.3:+8498158 | None:intergenic |
| GAAGCTATCGTCTTTGTGGA+TGG | 0.527003 | 5.3:+8498631 | None:intergenic |
| TGAGGTTGATACCAAGGCCC+TGG | 0.529736 | 5.3:-8497951 | MS.gene43545:CDS |
| CAGAACACTATTACGGTTGG+AGG | 0.533154 | 5.3:-8498088 | MS.gene43545:CDS |
| TTGGGAAGAGCTCGTGCTGT+AGG | 0.540312 | 5.3:+8497996 | None:intergenic |
| TCTAAAATCGAAGATGAGCA+AGG | 0.548154 | 5.3:-8502358 | None:intergenic |
| CTGCCTCAGCACCAAATGCA+AGG | 0.548233 | 5.3:+8498392 | None:intergenic |
| AATCAGAACACTATTACGGT+TGG | 0.550635 | 5.3:-8498091 | MS.gene43545:CDS |
| AGGTTAAGGTAGCATGGTCG+TGG | 0.557344 | 5.3:+8498476 | None:intergenic |
| TCAGCACCAAATGCAAGGGT+TGG | 0.562271 | 5.3:+8498397 | None:intergenic |
| GCAATGGCCAACCCAAACTT+GGG | 0.566984 | 5.3:+8497920 | None:intergenic |
| ACTTCAAGGTTTGAGAGCAA+TGG | 0.567035 | 5.3:+8497904 | None:intergenic |
| AGAAAGGAGGACTCTCAACT+GGG | 0.567353 | 5.3:-8498832 | MS.gene43545:CDS |
| CCGATATCAGAGTAGAGACC+CGG | 0.570661 | 5.3:+8502333 | None:intergenic |
| TTCTGGTGAGGTTGATACCA+AGG | 0.578817 | 5.3:-8497957 | MS.gene43545:CDS |
| TCGAAGATGAGCAAGGGACC+GGG | 0.581110 | 5.3:-8502351 | None:intergenic |
| CTAGCTTTGATCTGTGTCAG+AGG | 0.591430 | 5.3:+8498049 | None:intergenic |
| AGTGCTGACTATTTCTGGTG+AGG | 0.600743 | 5.3:-8497969 | MS.gene43545:CDS |
| CAACAATCAAGGAAAGGTTG+GGG | 0.608378 | 5.3:-8498023 | MS.gene43545:CDS |
| TGCCTCAGCACCAAATGCAA+GGG | 0.611427 | 5.3:+8498393 | None:intergenic |
| TAGGTTCAACAATCAAGGAA+AGG | 0.612340 | 5.3:-8498029 | MS.gene43545:CDS |
| TCAACTGCTTTGAAGAAAGG+AGG | 0.613940 | 5.3:-8498845 | MS.gene43545:CDS |
| CGACTGAGGTTAAGGTAGCA+TGG | 0.618567 | 5.3:+8498470 | None:intergenic |
| TTGCTTCAGTGTAGCGACTG+AGG | 0.620374 | 5.3:+8498456 | None:intergenic |
| GCCTGATTATAGTTCTGGCA+AGG | 0.623753 | 5.3:-8498599 | MS.gene43545:intron |
| GGCAGAAACATCAAAGATAG+GGG | 0.624754 | 5.3:+8498432 | None:intergenic |
| TTTCCTATCAGTGGCGACAA+GGG | 0.625564 | 5.3:-8498202 | MS.gene43545:intron |
| CTAAAATCGAAGATGAGCAA+GGG | 0.627918 | 5.3:-8502357 | None:intergenic |
| CTCTGACACAGATCAAAGCT+AGG | 0.632557 | 5.3:-8498048 | MS.gene43545:CDS |
| TAGCTTTGATCTGTGTCAGA+GGG | 0.634327 | 5.3:+8498050 | None:intergenic |
| TGAAACGGTAAGCTTCTGAT+CGG | 0.639844 | 5.3:+8502189 | None:intergenic |
| CTGTTGTGGATATTACCCGA+AGG | 0.654620 | 5.3:-8498123 | MS.gene43545:CDS |
| GATATCGGCAAGAAAGCCAA+AGG | 0.656361 | 5.3:-8502318 | MS.gene43545:intron |
| AGAACACTATTACGGTTGGA+GGG | 0.671397 | 5.3:-8498087 | MS.gene43545:CDS |
| AACAATCAAGGAAAGGTTGG+GGG | 0.680087 | 5.3:-8498022 | MS.gene43545:CDS |
| GAAAGGAGGACTCTCAACTG+GGG | 0.714176 | 5.3:-8498831 | MS.gene43545:CDS |
| AAGGGTTGGAGAACCAACAG+TGG | 0.718653 | 5.3:+8498411 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATAAAAAGTAAGAAA+GGG | + | chr5.3:8501008-8501027 | None:intergenic | 10.0% |
| !! | ATACATTAAAATAAAAAGAT+AGG | + | chr5.3:8498846-8498865 | None:intergenic | 10.0% |
| !! | ATGTAGAATATAATTTAAAA+AGG | - | chr5.3:8500019-8500038 | MS.gene43545:intron | 10.0% |
| !! | TAAATAATAAAAAGTAAGAA+AGG | + | chr5.3:8501009-8501028 | None:intergenic | 10.0% |
| !! | TAATAATAAAAAGTAAGAAA+GGG | + | chr5.3:8500797-8500816 | None:intergenic | 10.0% |
| !! | TGTAGAATATAATTTAAAAA+GGG | - | chr5.3:8500020-8500039 | MS.gene43545:intron | 10.0% |
| !! | TTAATAATAAAAAGTAAGAA+AGG | + | chr5.3:8500798-8500817 | None:intergenic | 10.0% |
| !! | TTATTAATTATAAATTGTAG+TGG | + | chr5.3:8498127-8498146 | None:intergenic | 10.0% |
| !!! | AAAGTGTTATAATAAAATAA+AGG | + | chr5.3:8499749-8499768 | None:intergenic | 10.0% |
| !!! | AATTTTCATAAAAGAATTAA+TGG | + | chr5.3:8498713-8498732 | None:intergenic | 10.0% |
| !!! | ACAGTTTTATTTTTTTAATA+CGG | - | chr5.3:8501143-8501162 | MS.gene43545:intron | 10.0% |
| !!! | ATTTTCATAAAAGAATTAAT+GGG | + | chr5.3:8498712-8498731 | None:intergenic | 10.0% |
| !! | AGAGAAAAAATAATAAAAGA+GGG | + | chr5.3:8499328-8499347 | None:intergenic | 15.0% |
| !! | ATAAAATGTAAATGTAATGT+AGG | - | chr5.3:8499507-8499526 | MS.gene43545:intron | 15.0% |
| !! | GTAGAATATAATTTAAAAAG+GGG | - | chr5.3:8500021-8500040 | MS.gene43545:intron | 15.0% |
| !! | TAGAATATAATTTAAAAAGG+GGG | - | chr5.3:8500022-8500041 | MS.gene43545:intron | 15.0% |
| !!! | AACGAAATATTTTAATATCA+AGG | + | chr5.3:8498446-8498465 | None:intergenic | 15.0% |
| !!! | ACAATAACTCTTTTTATATA+GGG | + | chr5.3:8498550-8498569 | None:intergenic | 15.0% |
| !!! | AGCTTTATAAATTAATTATC+TGG | - | chr5.3:8500230-8500249 | MS.gene43545:intron | 15.0% |
| !!! | AGTTTTATTTTTTTAATACG+GGG | - | chr5.3:8501145-8501164 | MS.gene43545:intron | 15.0% |
| !!! | ATTTACATTTTATTACTTAC+AGG | + | chr5.3:8499500-8499519 | None:intergenic | 15.0% |
| !!! | CAGTTTTATTTTTTTAATAC+GGG | - | chr5.3:8501144-8501163 | MS.gene43545:intron | 15.0% |
| !!! | TACATTTTCATAATTCATTT+TGG | - | chr5.3:8500838-8500857 | MS.gene43545:intron | 15.0% |
| !!! | TTAAAATTTTGATACATTGA+GGG | + | chr5.3:8498385-8498404 | None:intergenic | 15.0% |
| !!! | TTTAAAATTTTGATACATTG+AGG | + | chr5.3:8498386-8498405 | None:intergenic | 15.0% |
| !!! | TTTACATTTTATTACTTACA+GGG | + | chr5.3:8499499-8499518 | None:intergenic | 15.0% |
| !!! | TTTTCATAAAAGAATTAATG+GGG | + | chr5.3:8498711-8498730 | None:intergenic | 15.0% |
| !! | AGAATATAATTTAAAAAGGG+GGG | - | chr5.3:8500023-8500042 | MS.gene43545:intron | 20.0% |
| !! | ATCTAATGTTCATTTCAATA+TGG | - | chr5.3:8501361-8501380 | MS.gene43545:intron | 20.0% |
| !! | ATGCTTATTACCTAAAATTT+GGG | - | chr5.3:8500679-8500698 | MS.gene43545:intron | 20.0% |
| !! | CTTATGTTCAATTAATTCTT+GGG | - | chr5.3:8498307-8498326 | MS.gene43545:CDS | 20.0% |
| !! | GAGAGAAAAAATAATAAAAG+AGG | + | chr5.3:8499329-8499348 | None:intergenic | 20.0% |
| !! | TAAACAAAATAGCAATATCT+TGG | - | chr5.3:8499774-8499793 | MS.gene43545:intron | 20.0% |
| !! | TAAGAAAAATCACAAATCAA+TGG | - | chr5.3:8500278-8500297 | MS.gene43545:intron | 20.0% |
| !! | TATGTTGAATTCATAAATGT+TGG | - | chr5.3:8500546-8500565 | MS.gene43545:intron | 20.0% |
| !! | TTATGTTCAATTAATTCTTG+GGG | - | chr5.3:8498308-8498327 | MS.gene43545:CDS | 20.0% |
| !!! | ACTTATTGGCTAAAAAATTA+GGG | - | chr5.3:8500890-8500909 | MS.gene43545:intron | 20.0% |
| !!! | ATGATCAATTGATTTATCTA+AGG | - | chr5.3:8500517-8500536 | MS.gene43545:intron | 20.0% |
| !!! | CACAATAACTCTTTTTATAT+AGG | + | chr5.3:8498551-8498570 | None:intergenic | 20.0% |
| !!! | TACTTATTGGCTAAAAAATT+AGG | - | chr5.3:8500889-8500908 | MS.gene43545:intron | 20.0% |
| !!! | TACTTTTGTGAATTTAGTTT+TGG | - | chr5.3:8499613-8499632 | MS.gene43545:intron | 20.0% |
| !!! | TGATCAATTGATTTATCTAA+GGG | - | chr5.3:8500518-8500537 | MS.gene43545:intron | 20.0% |
| !!! | TTAGAATTTTGATACATTGA+AGG | - | chr5.3:8498638-8498657 | MS.gene43545:CDS | 20.0% |
| ! | AAAAAGTAAGAAAGGGATAA+AGG | + | chr5.3:8500790-8500809 | None:intergenic | 25.0% |
| ! | AAACGATTTATGAGCATAAA+TGG | + | chr5.3:8500139-8500158 | None:intergenic | 25.0% |
| ! | AACAAATCAGAACACTATTA+CGG | - | chr5.3:8502157-8502176 | MS.gene43545:intron | 25.0% |
| ! | AAGAGTTATTGTGAGTATTA+AGG | - | chr5.3:8498558-8498577 | MS.gene43545:intron | 25.0% |
| ! | AATACTATATGAACAATGTC+TGG | - | chr5.3:8499818-8499837 | MS.gene43545:intron | 25.0% |
| ! | ACAATAAGTAAGTACGTATA+AGG | + | chr5.3:8498518-8498537 | None:intergenic | 25.0% |
| ! | ACTAACAAAATACACAATCA+GGG | + | chr5.3:8498414-8498433 | None:intergenic | 25.0% |
| ! | AGAAATTCCAAAAGGAATTA+TGG | + | chr5.3:8500639-8500658 | None:intergenic | 25.0% |
| ! | AGAGTTATTGTGAGTATTAA+GGG | - | chr5.3:8498559-8498578 | MS.gene43545:intron | 25.0% |
| ! | ATAATCATCAATAACGTACA+AGG | - | chr5.3:8501055-8501074 | MS.gene43545:intron | 25.0% |
| ! | ATACTATATGAACAATGTCT+GGG | - | chr5.3:8499819-8499838 | MS.gene43545:intron | 25.0% |
| ! | CATGCTTATTACCTAAAATT+TGG | - | chr5.3:8500678-8500697 | MS.gene43545:intron | 25.0% |
| ! | GCTTATGTTCAATTAATTCT+TGG | - | chr5.3:8498306-8498325 | MS.gene43545:intron | 25.0% |
| ! | TGCTTATTACCTAAAATTTG+GGG | - | chr5.3:8500680-8500699 | MS.gene43545:intron | 25.0% |
| ! | TTATGTACAGACTAAAATAC+TGG | + | chr5.3:8499408-8499427 | None:intergenic | 25.0% |
| ! | TTGTTTATCAAAAACTCGTA+AGG | - | chr5.3:8499038-8499057 | MS.gene43545:intron | 25.0% |
| !! | CTGATTCATATTTTATTACG+TGG | - | chr5.3:8499431-8499450 | MS.gene43545:intron | 25.0% |
| !! | GTGATTTTTCATCTTTTGTA+TGG | - | chr5.3:8501679-8501698 | MS.gene43545:intron | 25.0% |
| !! | GTTCTTTTTAAATTCATGTC+CGG | - | chr5.3:8501228-8501247 | MS.gene43545:intron | 25.0% |
| !! | TACATTTCCATAATTCCTTT+TGG | - | chr5.3:8500629-8500648 | MS.gene43545:intron | 25.0% |
| !! | TTCTGTATAAACTTGTTTCA+CGG | - | chr5.3:8499585-8499604 | MS.gene43545:intron | 25.0% |
| !! | TTGTACGTTATTGATGATTA+TGG | + | chr5.3:8501056-8501075 | None:intergenic | 25.0% |
| !!! | ACTGTTTACGATGTTTTTAA+AGG | + | chr5.3:8498821-8498840 | None:intergenic | 25.0% |
| !!! | CTCAATTTTGACATCAATAA+GGG | + | chr5.3:8501477-8501496 | None:intergenic | 25.0% |
| !!! | TCTCAATTTTGACATCAATA+AGG | + | chr5.3:8501478-8501497 | None:intergenic | 25.0% |
| !!! | TGTTTTAGATCTTTTGACAA+AGG | - | chr5.3:8498031-8498050 | MS.gene43545:CDS | 25.0% |
| !!! | TTACGATGTTTTTAAAGGAA+CGG | + | chr5.3:8498816-8498835 | None:intergenic | 25.0% |
| !!! | TTATTTTTTTAATACGGGGA+TGG | - | chr5.3:8501149-8501168 | MS.gene43545:intron | 25.0% |
| !!! | TTTTCATGTCTGAAATACTT+GGG | - | chr5.3:8500094-8500113 | MS.gene43545:intron | 25.0% |
| ACTAACAAAGTAGACAATCA+GGG | - | chr5.3:8498609-8498628 | MS.gene43545:CDS | 30.0% | |
| ACTGAATGTTTAGAGACAAT+TGG | - | chr5.3:8499855-8499874 | MS.gene43545:intron | 30.0% | |
| ATGTAAGGAGAAATTCCAAA+AGG | + | chr5.3:8500647-8500666 | None:intergenic | 30.0% | |
| ATTCTGTATAAGTGCGATAA+TGG | + | chr5.3:8499722-8499741 | None:intergenic | 30.0% | |
| CAAATACTAAGAATGTGCTA+TGG | - | chr5.3:8501284-8501303 | MS.gene43545:intron | 30.0% | |
| CAACTTGGATGGATAAAATT+TGG | + | chr5.3:8499205-8499224 | None:intergenic | 30.0% | |
| CATAGCACATTCTTAGTATT+TGG | + | chr5.3:8501286-8501305 | None:intergenic | 30.0% | |
| GACTAACAAAATACACAATC+AGG | + | chr5.3:8498415-8498434 | None:intergenic | 30.0% | |
| GAGATTTGTAACAGAAATCT+TGG | + | chr5.3:8501988-8502007 | None:intergenic | 30.0% | |
| GGAATTATGGAAATGTACAA+TGG | + | chr5.3:8500626-8500645 | None:intergenic | 30.0% | |
| TAATTGCATTATCAGATGTC+AGG | - | chr5.3:8498175-8498194 | MS.gene43545:CDS | 30.0% | |
| TATGAAGCTTAGATATAGAC+AGG | + | chr5.3:8498766-8498785 | None:intergenic | 30.0% | |
| TTTCTGTTACAAATCTCTAG+CGG | - | chr5.3:8501991-8502010 | MS.gene43545:intron | 30.0% | |
| ! | AATATCTTTTGTGTTGTCCT+TGG | - | chr5.3:8499097-8499116 | MS.gene43545:intron | 30.0% |
| ! | ACAAGTTTATACAGAAGCAT+TGG | + | chr5.3:8499581-8499600 | None:intergenic | 30.0% |
| ! | TAATCACACATCAGAAGTAT+CGG | + | chr5.3:8498279-8498298 | None:intergenic | 30.0% |
| ! | TGTTTTGTCTATAGACAAAG+CGG | + | chr5.3:8499271-8499290 | None:intergenic | 30.0% |
| !! | ATTAATTTGTTAGCCGTTGT+CGG | - | chr5.3:8498243-8498262 | MS.gene43545:intron | 30.0% |
| !! | GTTTTCATGTCTGAAATACT+TGG | - | chr5.3:8500093-8500112 | MS.gene43545:intron | 30.0% |
| !! | TTATACAGAAGCATTGGATT+TGG | + | chr5.3:8499575-8499594 | None:intergenic | 30.0% |
| AAAAAGGTCAGTGAATGTGA+GGG | + | chr5.3:8501601-8501620 | None:intergenic | 35.0% | |
| AAACAAACTAACACACGACA+TGG | + | chr5.3:8499139-8499158 | None:intergenic | 35.0% | |
| AAAGCTAGGTTCAACAATCA+AGG | - | chr5.3:8502218-8502237 | MS.gene43545:intron | 35.0% | |
| AACATGTTCTTTCCTATCAG+TGG | - | chr5.3:8502041-8502060 | MS.gene43545:intron | 35.0% | |
| AATCAGAACACTATTACGGT+TGG | - | chr5.3:8502161-8502180 | MS.gene43545:intron | 35.0% | |
| AATTGAAGCTATCGTCTTTG+TGG | + | chr5.3:8501628-8501647 | None:intergenic | 35.0% | |
| AGACATGAACTTTGACAGAA+GGG | - | chr5.3:8499887-8499906 | MS.gene43545:intron | 35.0% | |
| AGTAGTGCTGTAAGATGAAA+CGG | + | chr5.3:8498081-8498100 | None:intergenic | 35.0% | |
| ATTATCAGATGTCAGGTTAC+TGG | - | chr5.3:8498182-8498201 | MS.gene43545:CDS | 35.0% | |
| ATTCATTCGTTCCTCATTCA+GGG | + | chr5.3:8498350-8498369 | None:intergenic | 35.0% | |
| ATTGTACTTCCTGGTTATCA+TGG | - | chr5.3:8501253-8501272 | MS.gene43545:intron | 35.0% | |
| CAATATGGTTTCTTCCTTTC+AGG | - | chr5.3:8501376-8501395 | MS.gene43545:intron | 35.0% | |
| CTCAAGTAAATCATCTCATG+TGG | - | chr5.3:8501550-8501569 | MS.gene43545:intron | 35.0% | |
| GACTAACAAAGTAGACAATC+AGG | - | chr5.3:8498608-8498627 | MS.gene43545:CDS | 35.0% | |
| GATATTCAGCCTAACAATGT+CGG | + | chr5.3:8499083-8499102 | None:intergenic | 35.0% | |
| GTTGCATACTGCATACTTAT+TGG | - | chr5.3:8500876-8500895 | MS.gene43545:intron | 35.0% | |
| TAATGGGGTAATAGTCACTT+TGG | + | chr5.3:8498696-8498715 | None:intergenic | 35.0% | |
| TAATTTCCAGACACAAAGCT+TGG | + | chr5.3:8501205-8501224 | None:intergenic | 35.0% | |
| TACCTAAAATTTGGGGATAG+TGG | - | chr5.3:8500687-8500706 | MS.gene43545:intron | 35.0% | |
| TAGACATGAACTTTGACAGA+AGG | - | chr5.3:8499886-8499905 | MS.gene43545:intron | 35.0% | |
| TAGGTTCAACAATCAAGGAA+AGG | - | chr5.3:8502223-8502242 | MS.gene43545:intron | 35.0% | |
| TATTCATTCGTTCCTCATTC+AGG | + | chr5.3:8498351-8498370 | None:intergenic | 35.0% | |
| TATTGAGTGGCCTATACAAA+AGG | + | chr5.3:8500575-8500594 | None:intergenic | 35.0% | |
| TCAACAATCAAGGAAAGGTT+GGG | - | chr5.3:8502228-8502247 | MS.gene43545:intron | 35.0% | |
| TGGAGAAAAAACCCAAGTTT+GGG | - | chr5.3:8502321-8502340 | MS.gene43545:CDS | 35.0% | |
| TGGCAGAAACATCAAAGATA+GGG | + | chr5.3:8501824-8501843 | None:intergenic | 35.0% | |
| TTCAACAATCAAGGAAAGGT+TGG | - | chr5.3:8502227-8502246 | MS.gene43545:intron | 35.0% | |
| TTTAAAAAGGGGGGAATTCT+TGG | - | chr5.3:8500032-8500051 | MS.gene43545:intron | 35.0% | |
| TTTCAACTTGGTTGTTCTGA+AGG | - | chr5.3:8500945-8500964 | MS.gene43545:intron | 35.0% | |
| ! | ATCCACTATCCCCAAATTTT+AGG | + | chr5.3:8500692-8500711 | None:intergenic | 35.0% |
| ! | ATGTTGGAAGCCTTTTGTAT+AGG | - | chr5.3:8500562-8500581 | MS.gene43545:intron | 35.0% |
| ! | GAATCGATTCAATTCACCTT+TGG | + | chr5.3:8497953-8497972 | None:intergenic | 35.0% |
| ! | GATTTGTCATTTGCAGTTAG+AGG | - | chr5.3:8501743-8501762 | MS.gene43545:intron | 35.0% |
| ! | TTTATCCATCCAAGTTGAGT+CGG | - | chr5.3:8499208-8499227 | MS.gene43545:intron | 35.0% |
| ! | TTTGTTGTCTATAGACGAAG+CGG | + | chr5.3:8499169-8499188 | None:intergenic | 35.0% |
| !! | AAATAGTCAGCACTGACTTT+GGG | + | chr5.3:8502277-8502296 | None:intergenic | 35.0% |
| !! | ACTTCAACTGCTTTGAAGAA+AGG | - | chr5.3:8501404-8501423 | MS.gene43545:intron | 35.0% |
| !! | TCTGATTTGTTGAGAACCTT+CGG | + | chr5.3:8502148-8502167 | None:intergenic | 35.0% |
| !! | TCTTCTTGATTTGGTCTAGA+TGG | + | chr5.3:8502103-8502122 | None:intergenic | 35.0% |
| !! | TGGGATTAGTTTCACGAAAT+TGG | - | chr5.3:8501923-8501942 | MS.gene43545:intron | 35.0% |
| !! | TGGTTTTCAAGACATGTTGT+TGG | - | chr5.3:8499665-8499684 | MS.gene43545:intron | 35.0% |
| !! | TGTATAAGTGCGATAATGGA+TGG | + | chr5.3:8499718-8499737 | None:intergenic | 35.0% |
| !!! | AAACTTGGGTTTTTTCTCCA+GGG | + | chr5.3:8502321-8502340 | None:intergenic | 35.0% |
| !!! | ATGGTTTTAGGAATCAGACA+TGG | - | chr5.3:8499970-8499989 | MS.gene43545:intron | 35.0% |
| AACAATCAAGGAAAGGTTGG+GGG | - | chr5.3:8502230-8502249 | MS.gene43545:intron | 40.0% | |
| AAGCTGCCTGATTATAGTTC+TGG | - | chr5.3:8501648-8501667 | MS.gene43545:intron | 40.0% | |
| AATTGAGACAGCGTCAATTG+TGG | - | chr5.3:8501490-8501509 | MS.gene43545:intron | 40.0% | |
| ACCTTGCCAGAACTATAATC+AGG | + | chr5.3:8501657-8501676 | None:intergenic | 40.0% | |
| AGAACACTATTACGGTTGGA+GGG | - | chr5.3:8502165-8502184 | MS.gene43545:intron | 40.0% | |
| AGGCTCAGAAAAATTGTTGG+TGG | - | chr5.3:8500318-8500337 | MS.gene43545:intron | 40.0% | |
| ATTACGTGGTCAGCTTCTTA+AGG | - | chr5.3:8499445-8499464 | MS.gene43545:intron | 40.0% | |
| ATTGAGACAGCGTCAATTGT+GGG | - | chr5.3:8501491-8501510 | MS.gene43545:intron | 40.0% | |
| CAACAATCAAGGAAAGGTTG+GGG | - | chr5.3:8502229-8502248 | MS.gene43545:intron | 40.0% | |
| CAAGCCTATTCCCACTAAAT+GGG | + | chr5.3:8498998-8499017 | None:intergenic | 40.0% | |
| CAATGGCGACACTAATCATT+TGG | + | chr5.3:8500609-8500628 | None:intergenic | 40.0% | |
| CAGAGGCTCAGAAAAATTGT+TGG | - | chr5.3:8500315-8500334 | MS.gene43545:intron | 40.0% | |
| CTATTCCCACTAAATGGGAT+GGG | + | chr5.3:8498993-8499012 | None:intergenic | 40.0% | |
| CTCCACACTTAAACGTGATT+TGG | - | chr5.3:8498909-8498928 | MS.gene43545:intron | 40.0% | |
| CTGGAGAAAAAACCCAAGTT+TGG | - | chr5.3:8502320-8502339 | MS.gene43545:CDS | 40.0% | |
| CTTTCTGCTAGTCATAAGAG+CGG | - | chr5.3:8499636-8499655 | MS.gene43545:intron | 40.0% | |
| GAAAAAACCCAAGTTTGGGT+TGG | - | chr5.3:8502325-8502344 | MS.gene43545:CDS | 40.0% | |
| GAAAAAGGTCAGTGAATGTG+AGG | + | chr5.3:8501602-8501621 | None:intergenic | 40.0% | |
| GAGATTGAGTGATTGATCAC+TGG | - | chr5.3:8500403-8500422 | MS.gene43545:intron | 40.0% | |
| GCAGGCTATGATACTAAATC+TGG | - | chr5.3:8501879-8501898 | MS.gene43545:intron | 40.0% | |
| GGCAGAAACATCAAAGATAG+GGG | + | chr5.3:8501823-8501842 | None:intergenic | 40.0% | |
| GGTGATTCAAACGTATTGAG+TGG | + | chr5.3:8500588-8500607 | None:intergenic | 40.0% | |
| GTGGCAGAAACATCAAAGAT+AGG | + | chr5.3:8501825-8501844 | None:intergenic | 40.0% | |
| GTTTCATCTTACAGCACTAC+TGG | - | chr5.3:8498080-8498099 | MS.gene43545:CDS | 40.0% | |
| TCAGACATGGAAGAAACAGA+TGG | - | chr5.3:8499983-8500002 | MS.gene43545:intron | 40.0% | |
| TCGTCTTTGTGGATGGAAAA+AGG | + | chr5.3:8501617-8501636 | None:intergenic | 40.0% | |
| TCTGATGTGTGATTAGTGTC+TGG | - | chr5.3:8498284-8498303 | MS.gene43545:intron | 40.0% | |
| TGAAACGGTAAGCTTCTGAT+CGG | + | chr5.3:8498066-8498085 | None:intergenic | 40.0% | |
| TGCCAAATCACGTTTAAGTG+TGG | + | chr5.3:8498914-8498933 | None:intergenic | 40.0% | |
| TGTCTATAGACAAAGCGGTT+TGG | + | chr5.3:8499266-8499285 | None:intergenic | 40.0% | |
| TTGAGAAATCTGTAGAGGAC+AGG | - | chr5.3:8500435-8500454 | MS.gene43545:intron | 40.0% | |
| TTGTTGTCTATAGACGAAGC+GGG | + | chr5.3:8499168-8499187 | None:intergenic | 40.0% | |
| TTTCAGCTTGGTTGTTCTGA+AGG | - | chr5.3:8500735-8500754 | MS.gene43545:intron | 40.0% | |
| ! | ATGTGAGGGTTGTATTGATC+TGG | + | chr5.3:8501587-8501606 | None:intergenic | 40.0% |
| ! | GACTACTTGCTACACATTCA+GGG | - | chr5.3:8498669-8498688 | MS.gene43545:intron | 40.0% |
| ! | GCAATGAAAGCTTTTCAGCT+TGG | - | chr5.3:8500723-8500742 | MS.gene43545:intron | 40.0% |
| ! | GCTCGCTTTAAATGTTTCTG+AGG | + | chr5.3:8499384-8499403 | None:intergenic | 40.0% |
| ! | GGTTGTATTGATCTGGAAGA+GGG | + | chr5.3:8501580-8501599 | None:intergenic | 40.0% |
| ! | GTGAGTTGAGAAATCTGTAG+AGG | - | chr5.3:8500430-8500449 | MS.gene43545:intron | 40.0% |
| ! | TAACCAGGAAGTACAATAGC+CGG | + | chr5.3:8501250-8501269 | None:intergenic | 40.0% |
| ! | TGACTACTTGCTACACATTC+AGG | - | chr5.3:8498668-8498687 | MS.gene43545:intron | 40.0% |
| ! | TTTGATGTTTCTGCCACTGT+TGG | - | chr5.3:8501828-8501847 | MS.gene43545:intron | 40.0% |
| !! | AAGTCAGTGCTGACTATTTC+TGG | - | chr5.3:8502278-8502297 | MS.gene43545:intron | 40.0% |
| !! | ACACTGTCTCTGAAATTGTG+TGG | - | chr5.3:8501720-8501739 | MS.gene43545:intron | 40.0% |
| !! | CACTGTCTCTGAAATTGTGT+GGG | - | chr5.3:8501721-8501740 | MS.gene43545:intron | 40.0% |
| !! | CTGATTTGTTGAGAACCTTC+GGG | + | chr5.3:8502147-8502166 | None:intergenic | 40.0% |
| !! | GAAATAGTCAGCACTGACTT+TGG | + | chr5.3:8502278-8502297 | None:intergenic | 40.0% |
| !! | GCGCATTTGATGATGATTGT+CGG | - | chr5.3:8498790-8498809 | MS.gene43545:CDS | 40.0% |
| !! | TAGCTTTGATCTGTGTCAGA+GGG | + | chr5.3:8502205-8502224 | None:intergenic | 40.0% |
| !! | TCAACTGCTTTGAAGAAAGG+AGG | - | chr5.3:8501407-8501426 | MS.gene43545:intron | 40.0% |
| !! | TCTTGATTTGGTCTAGATGG+TGG | + | chr5.3:8502100-8502119 | None:intergenic | 40.0% |
| !!! | CAAACTTGGGTTTTTTCTCC+AGG | + | chr5.3:8502322-8502341 | None:intergenic | 40.0% |
| AAAACCATCCAAGCCTCCAA+GGG | + | chr5.3:8499958-8499977 | None:intergenic | 45.0% | |
| AAGAAAGGAGGACTCTCAAC+TGG | - | chr5.3:8501419-8501438 | MS.gene43545:intron | 45.0% | |
| AAGAATGTGCTATGGTTCCC+AGG | - | chr5.3:8501292-8501311 | MS.gene43545:intron | 45.0% | |
| AGAAAGGAGGACTCTCAACT+GGG | - | chr5.3:8501420-8501439 | MS.gene43545:intron | 45.0% | |
| AGAATGTGCTATGGTTCCCA+GGG | - | chr5.3:8501293-8501312 | MS.gene43545:intron | 45.0% | |
| AGACAGGACACAACATAGAC+AGG | + | chr5.3:8498750-8498769 | None:intergenic | 45.0% | |
| AGTCATAAGAGCGGAGCATA+TGG | - | chr5.3:8499645-8499664 | MS.gene43545:intron | 45.0% | |
| AGTTGAAGTGAGTGCCTGAA+AGG | + | chr5.3:8501393-8501412 | None:intergenic | 45.0% | |
| ATGCATGTTGACAGCAACGT+AGG | - | chr5.3:8500920-8500939 | MS.gene43545:intron | 45.0% | |
| CAGAACACTATTACGGTTGG+AGG | - | chr5.3:8502164-8502183 | MS.gene43545:intron | 45.0% | |
| CAGCAGCACTCTTCTTGATT+TGG | + | chr5.3:8502112-8502131 | None:intergenic | 45.0% | |
| CATGCAGTACGCATCATGTA+AGG | + | chr5.3:8500662-8500681 | None:intergenic | 45.0% | |
| CCAAGCCTATTCCCACTAAA+TGG | + | chr5.3:8498999-8499018 | None:intergenic | 45.0% | |
| CCATCCCATTTAGTGGGAAT+AGG | - | chr5.3:8498991-8499010 | MS.gene43545:intron | 45.0% | |
| CCATTTAGTGGGAATAGGCT+TGG | - | chr5.3:8498996-8499015 | MS.gene43545:intron | 45.0% | |
| CCTATTCCCACTAAATGGGA+TGG | + | chr5.3:8498994-8499013 | None:intergenic | 45.0% | |
| CTCTGACACAGATCAAAGCT+AGG | - | chr5.3:8502204-8502223 | MS.gene43545:CDS | 45.0% | |
| CTGTTGTGGATATTACCCGA+AGG | - | chr5.3:8502129-8502148 | MS.gene43545:intron | 45.0% | |
| GAAGCTATCGTCTTTGTGGA+TGG | + | chr5.3:8501624-8501643 | None:intergenic | 45.0% | |
| GACAGGACACAACATAGACA+GGG | + | chr5.3:8498749-8498768 | None:intergenic | 45.0% | |
| GAGCCTCTGCTGTCTATTAT+TGG | + | chr5.3:8500304-8500323 | None:intergenic | 45.0% | |
| GATATCGGCAAGAAAGCCAA+AGG | - | chr5.3:8497934-8497953 | MS.gene43545:CDS | 45.0% | |
| GATTTGGCAAGAGTAGTACC+TGG | - | chr5.3:8498925-8498944 | MS.gene43545:intron | 45.0% | |
| GCGGTAATACCGACATTGTT+AGG | - | chr5.3:8499071-8499090 | MS.gene43545:intron | 45.0% | |
| GCTGTTGAAAGTTATCACGC+AGG | - | chr5.3:8500063-8500082 | MS.gene43545:intron | 45.0% | |
| GTACTTCCTGGTTATCATGG+TGG | - | chr5.3:8501256-8501275 | MS.gene43545:intron | 45.0% | |
| TAAAACCATCCAAGCCTCCA+AGG | + | chr5.3:8499959-8499978 | None:intergenic | 45.0% | |
| TGGCCAATAATAGACAGCAG+AGG | - | chr5.3:8500298-8500317 | MS.gene43545:intron | 45.0% | |
| TTCTTAATGCCGTACTGCAG+CGG | - | chr5.3:8501094-8501113 | MS.gene43545:intron | 45.0% | |
| TTTAGTGGGAATAGGCTTGG+TGG | - | chr5.3:8498999-8499018 | MS.gene43545:intron | 45.0% | |
| TTTCCAGACACAAAGCTTGG+AGG | + | chr5.3:8501202-8501221 | None:intergenic | 45.0% | |
| TTTCCTATCAGTGGCGACAA+GGG | - | chr5.3:8502050-8502069 | MS.gene43545:intron | 45.0% | |
| ! | CTTGGACAAGAGTTGAGTTG+AGG | - | chr5.3:8499792-8499811 | MS.gene43545:intron | 45.0% |
| ! | GCAACGTAGGCTTTTCAACT+TGG | - | chr5.3:8500933-8500952 | MS.gene43545:intron | 45.0% |
| ! | GGGTTGTATTGATCTGGAAG+AGG | + | chr5.3:8501581-8501600 | None:intergenic | 45.0% |
| ! | GTCACTTTAGTCCCTGAATG+AGG | - | chr5.3:8498336-8498355 | MS.gene43545:CDS | 45.0% |
| ! | TTCATGTAGCCGACTCAACT+TGG | + | chr5.3:8499220-8499239 | None:intergenic | 45.0% |
| ! | TTGGAGGCTTGGATGGTTTT+AGG | - | chr5.3:8499958-8499977 | MS.gene43545:intron | 45.0% |
| ! | TTTCCTCCAAGCTTTGTGTC+TGG | - | chr5.3:8501196-8501215 | MS.gene43545:intron | 45.0% |
| !! | AAGCGGTTTGGTTCAACACA+AGG | + | chr5.3:8499254-8499273 | None:intergenic | 45.0% |
| !! | AGTGCTGACTATTTCTGGTG+AGG | - | chr5.3:8502283-8502302 | MS.gene43545:intron | 45.0% |
| !! | CTAGCTTTGATCTGTGTCAG+AGG | + | chr5.3:8502206-8502225 | None:intergenic | 45.0% |
| !! | GCCTGATTATAGTTCTGGCA+AGG | - | chr5.3:8501653-8501672 | MS.gene43545:intron | 45.0% |
| !! | GCGATAATGGATGGTTCGTA+GGG | + | chr5.3:8499709-8499728 | None:intergenic | 45.0% |
| !! | TGATTTGGTCTAGATGGTGG+AGG | + | chr5.3:8502097-8502116 | None:intergenic | 45.0% |
| !! | TGCGATAATGGATGGTTCGT+AGG | + | chr5.3:8499710-8499729 | None:intergenic | 45.0% |
| !! | TTCTGGTGAGGTTGATACCA+AGG | - | chr5.3:8502295-8502314 | MS.gene43545:intron | 45.0% |
| AACATGAACCCGCTGCAGTA+CGG | + | chr5.3:8501106-8501125 | None:intergenic | 50.0% | |
| AAGGGTTGGAGAACCAACAG+TGG | + | chr5.3:8501844-8501863 | None:intergenic | 50.0% | |
| ACACACGACATGGAAGATCC+CGG | + | chr5.3:8499129-8499148 | None:intergenic | 50.0% | |
| ACCTGGATGTGTGACATCCT+AGG | - | chr5.3:8498942-8498961 | MS.gene43545:intron | 50.0% | |
| AGCAATGGCCAACCCAAACT+TGG | + | chr5.3:8502336-8502355 | None:intergenic | 50.0% | |
| AGGTTAAGGTAGCATGGTCG+TGG | + | chr5.3:8501779-8501798 | None:intergenic | 50.0% | |
| ATGCCAATGCGAGACTGACA+AGG | - | chr5.3:8500487-8500506 | MS.gene43545:intron | 50.0% | |
| CAGTGTAGCGACTGAGGTTA+AGG | + | chr5.3:8501793-8501812 | None:intergenic | 50.0% | |
| CCGATATCAGAGTAGAGACC+CGG | + | chr5.3:8497922-8497941 | None:intergenic | 50.0% | |
| CCGGGTCTCTACTCTGATAT+CGG | - | chr5.3:8497919-8497938 | MS.gene43545:CDS | 50.0% | |
| CGACTGAGGTTAAGGTAGCA+TGG | + | chr5.3:8501785-8501804 | None:intergenic | 50.0% | |
| CTTTCCTATCAGTGGCGACA+AGG | - | chr5.3:8502049-8502068 | MS.gene43545:intron | 50.0% | |
| GAAAGGAGGACTCTCAACTG+GGG | - | chr5.3:8501421-8501440 | MS.gene43545:intron | 50.0% | |
| GCAATGGCCAACCCAAACTT+GGG | + | chr5.3:8502335-8502354 | None:intergenic | 50.0% | |
| GGAAAGCCACCATGATAACC+AGG | + | chr5.3:8501265-8501284 | None:intergenic | 50.0% | |
| GGTTCTCCAACCCTTGCATT+TGG | - | chr5.3:8501849-8501868 | MS.gene43545:intron | 50.0% | |
| GTGCAACACAAGGACTTCCT+AGG | + | chr5.3:8498962-8498981 | None:intergenic | 50.0% | |
| TCAAAAAACAGCGCCACCCT+TGG | - | chr5.3:8499939-8499958 | MS.gene43545:intron | 50.0% | |
| TCAGCACCAAATGCAAGGGT+TGG | + | chr5.3:8501858-8501877 | None:intergenic | 50.0% | |
| TCCTAGGATGTCACACATCC+AGG | + | chr5.3:8498946-8498965 | None:intergenic | 50.0% | |
| TCGGTATTACCGCTTGAGCT+AGG | + | chr5.3:8499064-8499083 | None:intergenic | 50.0% | |
| TCTTAATGCCGTACTGCAGC+GGG | - | chr5.3:8501095-8501114 | MS.gene43545:intron | 50.0% | |
| TGCCTCAGCACCAAATGCAA+GGG | + | chr5.3:8501862-8501881 | None:intergenic | 50.0% | |
| TGTCCGGCTATTGTACTTCC+TGG | - | chr5.3:8501244-8501263 | MS.gene43545:intron | 50.0% | |
| TTCCCACTAAATGGGATGGG+CGG | + | chr5.3:8498990-8499009 | None:intergenic | 50.0% | |
| TTGCTTCAGTGTAGCGACTG+AGG | + | chr5.3:8501799-8501818 | None:intergenic | 50.0% | |
| ! | GTGTTGTCCTTGGTTCGAAC+CGG | - | chr5.3:8499107-8499126 | MS.gene43545:intron | 50.0% |
| ! | TGTAGCCGACTCAACTTGGA+TGG | + | chr5.3:8499216-8499235 | None:intergenic | 50.0% |
| ! | TGTTGTCCTTGGTTCGAACC+GGG | - | chr5.3:8499108-8499127 | MS.gene43545:intron | 50.0% |
| !! | AACCCTTGCATTTGGTGCTG+AGG | - | chr5.3:8501857-8501876 | MS.gene43545:intron | 50.0% |
| !! | CAAGAAGAGTGCTGCTGTTG+TGG | - | chr5.3:8502115-8502134 | MS.gene43545:intron | 50.0% |
| !! | CGGTTTGGTTCAACACAAGG+AGG | + | chr5.3:8499251-8499270 | None:intergenic | 50.0% |
| AAAAACAGCGCCACCCTTGG+AGG | - | chr5.3:8499942-8499961 | MS.gene43545:intron | 55.0% | |
| AGGACTCTCAACTGGGGATG+TGG | - | chr5.3:8501427-8501446 | MS.gene43545:intron | 55.0% | |
| CAACATAGACAGGGCGACAC+TGG | + | chr5.3:8498740-8498759 | None:intergenic | 55.0% | |
| CTCGTAAGGCCTAGCTCAAG+CGG | - | chr5.3:8499052-8499071 | MS.gene43545:intron | 55.0% | |
| CTGCCTCAGCACCAAATGCA+AGG | + | chr5.3:8501863-8501882 | None:intergenic | 55.0% | |
| GCACCTTGTCAGTCTCGCAT+TGG | + | chr5.3:8500493-8500512 | None:intergenic | 55.0% | |
| TCACCCTTGTCGCCACTGAT+AGG | + | chr5.3:8502056-8502075 | None:intergenic | 55.0% | |
| TCCCACTAAATGGGATGGGC+GGG | + | chr5.3:8498989-8499008 | None:intergenic | 55.0% | |
| TCCCGCCCATCCCATTTAGT+GGG | - | chr5.3:8498985-8499004 | MS.gene43545:intron | 55.0% | |
| TTGGGAAGAGCTCGTGCTGT+AGG | + | chr5.3:8502259-8502278 | None:intergenic | 55.0% | |
| ! | CAGCGGGTTCATGTTGAAGG+TGG | - | chr5.3:8501111-8501130 | MS.gene43545:intron | 55.0% |
| ! | CTGCAGCGGGTTCATGTTGA+AGG | - | chr5.3:8501108-8501127 | MS.gene43545:intron | 55.0% |
| ! | GAAGATCCCGGTTCGAACCA+AGG | + | chr5.3:8499117-8499136 | None:intergenic | 55.0% |
| !! | CGGTGCTACATAGCCGACAA+CGG | + | chr5.3:8498259-8498278 | None:intergenic | 55.0% |
| !! | CTTGCATTTGGTGCTGAGGC+AGG | - | chr5.3:8501861-8501880 | MS.gene43545:intron | 55.0% |
| !! | TGAGGTTGATACCAAGGCCC+TGG | - | chr5.3:8502301-8502320 | MS.gene43545:intron | 55.0% |
| !!! | GGGTTTTTTCTCCAGGGCCT+TGG | + | chr5.3:8502315-8502334 | None:intergenic | 55.0% |
| ACCATCCAAGCCTCCAAGGG+TGG | + | chr5.3:8499955-8499974 | None:intergenic | 60.0% | |
| CTAAATGGGATGGGCGGGAG+AGG | + | chr5.3:8498984-8499003 | None:intergenic | 60.0% | |
| CTCAGCTGAGTCGTGACCCT+GGG | + | chr5.3:8501312-8501331 | None:intergenic | 60.0% | |
| CTCCCGCCCATCCCATTTAG+TGG | - | chr5.3:8498984-8499003 | MS.gene43545:intron | 60.0% | |
| CTCTCAACTGGGGATGTGGC+AGG | - | chr5.3:8501431-8501450 | MS.gene43545:intron | 60.0% | |
| TCTCAGCTGAGTCGTGACCC+TGG | + | chr5.3:8501313-8501332 | None:intergenic | 60.0% | |
| GCCACCCTTGGAGGCTTGGA+TGG | - | chr5.3:8499951-8499970 | MS.gene43545:intron | 65.0% | |
| ! | GGCGGGAGAGGTGCAACACA+AGG | + | chr5.3:8498972-8498991 | None:intergenic | 65.0% |
| CAGCGCCACCCTTGGAGGCT+TGG | - | chr5.3:8499947-8499966 | MS.gene43545:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 8497907 | 8502367 | 8497907 | ID=MS.gene43545 |
| chr5.3 | mRNA | 8497907 | 8502367 | 8497907 | ID=MS.gene43545.t1;Parent=MS.gene43545 |
| chr5.3 | exon | 8502319 | 8502367 | 8502319 | ID=MS.gene43545.t1.exon1;Parent=MS.gene43545.t1 |
| chr5.3 | CDS | 8502319 | 8502367 | 8502319 | ID=cds.MS.gene43545.t1;Parent=MS.gene43545.t1 |
| chr5.3 | exon | 8502168 | 8502235 | 8502168 | ID=MS.gene43545.t1.exon2;Parent=MS.gene43545.t1 |
| chr5.3 | CDS | 8502168 | 8502235 | 8502168 | ID=cds.MS.gene43545.t1;Parent=MS.gene43545.t1 |
| chr5.3 | exon | 8498766 | 8498876 | 8498766 | ID=MS.gene43545.t1.exon3;Parent=MS.gene43545.t1 |
| chr5.3 | CDS | 8498766 | 8498876 | 8498766 | ID=cds.MS.gene43545.t1;Parent=MS.gene43545.t1 |
| chr5.3 | exon | 8498600 | 8498686 | 8498600 | ID=MS.gene43545.t1.exon4;Parent=MS.gene43545.t1 |
| chr5.3 | CDS | 8498600 | 8498686 | 8498600 | ID=cds.MS.gene43545.t1;Parent=MS.gene43545.t1 |
| chr5.3 | exon | 8498307 | 8498515 | 8498307 | ID=MS.gene43545.t1.exon5;Parent=MS.gene43545.t1 |
| chr5.3 | CDS | 8498307 | 8498515 | 8498307 | ID=cds.MS.gene43545.t1;Parent=MS.gene43545.t1 |
| chr5.3 | exon | 8497907 | 8498213 | 8497907 | ID=MS.gene43545.t1.exon6;Parent=MS.gene43545.t1 |
| chr5.3 | CDS | 8497907 | 8498213 | 8497907 | ID=cds.MS.gene43545.t1;Parent=MS.gene43545.t1 |
| Gene Sequence |
| Protein sequence |
