Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20480.t1 | XP_013450932.1 | 98.9 | 278 | 3 | 0 | 1 | 278 | 1 | 278 | 6.30E-150 | 540 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20480.t1 | P42054 | 72.7 | 278 | 74 | 1 | 1 | 278 | 1 | 276 | 9.6e-115 | 414.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20480.t1 | I3S1P8 | 98.9 | 278 | 3 | 0 | 1 | 278 | 1 | 278 | 4.5e-150 | 540.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene20480 | MS.gene09596 | PPI |
| MS.gene20294 | MS.gene20480 | PPI |
| MS.gene43545 | MS.gene20480 | PPI |
| MS.gene015254 | MS.gene20480 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20480.t1 | MTR_6g011390 | 98.921 | 278 | 3 | 0 | 1 | 278 | 1 | 278 | 0.0 | 558 |
| MS.gene20480.t1 | MTR_7g009330 | 68.231 | 277 | 86 | 1 | 2 | 278 | 3 | 277 | 2.02e-143 | 404 |
| MS.gene20480.t1 | MTR_8g469150 | 62.230 | 278 | 103 | 1 | 1 | 278 | 1 | 276 | 5.33e-128 | 365 |
| MS.gene20480.t1 | MTR_8g469150 | 62.082 | 269 | 100 | 1 | 1 | 269 | 1 | 267 | 3.17e-122 | 350 |
| MS.gene20480.t1 | MTR_5g015580 | 49.640 | 278 | 138 | 1 | 1 | 278 | 1 | 276 | 2.95e-92 | 274 |
| MS.gene20480.t1 | MTR_4g128300 | 45.552 | 281 | 148 | 3 | 1 | 278 | 1 | 279 | 2.52e-78 | 239 |
| MS.gene20480.t1 | MTR_1g018205 | 44.404 | 277 | 152 | 1 | 2 | 278 | 3 | 277 | 2.65e-76 | 233 |
| MS.gene20480.t1 | MTR_4g107840 | 32.632 | 285 | 144 | 5 | 1 | 278 | 1 | 244 | 5.35e-45 | 152 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20480.t1 | AT3G01280 | 65.468 | 278 | 94 | 1 | 1 | 278 | 1 | 276 | 5.24e-140 | 395 |
| MS.gene20480.t1 | AT5G15090 | 65.468 | 278 | 92 | 2 | 1 | 278 | 1 | 274 | 3.13e-135 | 383 |
| MS.gene20480.t1 | AT5G15090 | 65.468 | 278 | 92 | 2 | 1 | 278 | 1 | 274 | 3.13e-135 | 383 |
| MS.gene20480.t1 | AT5G67500 | 47.842 | 278 | 143 | 1 | 1 | 278 | 1 | 276 | 1.88e-93 | 277 |
| MS.gene20480.t1 | AT5G67500 | 47.212 | 269 | 140 | 1 | 1 | 269 | 1 | 267 | 5.50e-88 | 264 |
| MS.gene20480.t1 | AT5G67500 | 43.607 | 305 | 143 | 2 | 1 | 278 | 1 | 303 | 1.80e-87 | 263 |
| MS.gene20480.t1 | AT5G57490 | 44.604 | 278 | 150 | 2 | 1 | 278 | 1 | 274 | 1.52e-81 | 247 |
| MS.gene20480.t1 | AT3G49920 | 35.971 | 278 | 126 | 2 | 1 | 278 | 1 | 226 | 4.05e-54 | 175 |
| MS.gene20480.t1 | AT3G49920 | 45.133 | 113 | 62 | 0 | 1 | 113 | 1 | 113 | 7.59e-26 | 99.4 |
| MS.gene20480.t1 | AT3G49920 | 45.133 | 113 | 62 | 0 | 1 | 113 | 1 | 113 | 7.59e-26 | 99.4 |
| MS.gene20480.t1 | AT5G37610 | 36.747 | 166 | 99 | 3 | 113 | 276 | 2 | 163 | 3.74e-25 | 98.6 |
| MS.gene20480.t1 | AT3G49920 | 54.545 | 77 | 35 | 0 | 1 | 77 | 1 | 77 | 1.76e-23 | 92.4 |
Find 60 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTCATTCTTCACCATTTC+TGG | 0.109113 | 6.3:-5965539 | MS.gene20480:CDS |
| CTCAGCTCCAACAGCTGTTT+TGG | 0.268874 | 6.3:+5965700 | None:intergenic |
| TGCACTCTTCTCAATGGCCT+TGG | 0.321673 | 6.3:+5965505 | None:intergenic |
| CATGGTAGTATGAAGCATTC+AGG | 0.325769 | 6.3:+5965738 | None:intergenic |
| CCAGACTTTAGTTCAGGTTC+AGG | 0.331087 | 6.3:+5967199 | None:intergenic |
| ACACCAGAAAAGTTGGCAAT+TGG | 0.338198 | 6.3:+5967015 | None:intergenic |
| CTTTCTTATGACACCAAAAC+TGG | 0.346527 | 6.3:-5966958 | MS.gene20480:CDS |
| TCAAGACTATTCTTAGCTTC+AGG | 0.359070 | 6.3:-5967225 | MS.gene20480:CDS |
| TCTTGTGAACACGCCAGTTT+TGG | 0.359359 | 6.3:+5966945 | None:intergenic |
| CGAAGCAATCAAATCGTCTT+TGG | 0.360628 | 6.3:+5966900 | None:intergenic |
| AAGTAGTGAGAGTGAACTTC+TGG | 0.367066 | 6.3:+5969293 | None:intergenic |
| CACCAGAAAAGTTGGCAATT+GGG | 0.385907 | 6.3:+5967016 | None:intergenic |
| ACCTTTCCAGACTTTAGTTC+AGG | 0.409767 | 6.3:+5967193 | None:intergenic |
| TGCAAGGATTGGAATAGCTT+TGG | 0.416994 | 6.3:-5965486 | MS.gene20480:CDS |
| TCCAATAACACCAGAAAAGT+TGG | 0.423097 | 6.3:+5967008 | None:intergenic |
| CTGGGATTTCCGCCAGCATT+GGG | 0.423944 | 6.3:-5967050 | MS.gene20480:CDS |
| GGTGTCCACCTCACCAGAAA+TGG | 0.430124 | 6.3:+5965526 | None:intergenic |
| GCTGGGATTTCCGCCAGCAT+TGG | 0.432425 | 6.3:-5967051 | MS.gene20480:CDS |
| CTCACTACTTATTCACCTAC+TGG | 0.441736 | 6.3:-5969280 | MS.gene20480:CDS |
| CAGTACTTGCATGACTATGC+TGG | 0.447339 | 6.3:-5967069 | MS.gene20480:CDS |
| ACTGTTAATGAGCCAGCTCC+TGG | 0.450210 | 6.3:-5967250 | MS.gene20480:CDS |
| ACTTTGGACGCCACTCGTGC+TGG | 0.452175 | 6.3:+5965558 | None:intergenic |
| CCTGAACCTGAACTAAAGTC+TGG | 0.459932 | 6.3:-5967199 | MS.gene20480:CDS |
| TATTGCAGATCTTCTTTACA+AGG | 0.467342 | 6.3:-5969329 | MS.gene20480:intron |
| AATCCTTGCACTCTTCTCAA+TGG | 0.471924 | 6.3:+5965499 | None:intergenic |
| TGGTAATGGGATTGACTACA+TGG | 0.480590 | 6.3:+5965720 | None:intergenic |
| AAAGAAAACACACTCACTCT+TGG | 0.485860 | 6.3:-5965656 | MS.gene20480:CDS |
| CCCATTACCAAAACAGCTGT+TGG | 0.494373 | 6.3:-5965707 | MS.gene20480:CDS |
| CCGATGTCAGAGTAAAGACC+TGG | 0.503188 | 6.3:+5969478 | None:intergenic |
| CTTCACCATTTCTGGTGAGG+TGG | 0.514326 | 6.3:-5965531 | MS.gene20480:CDS |
| CTCACCTTTCTTGGTACTTG+AGG | 0.516518 | 6.3:+5968209 | None:intergenic |
| GAAATGGTGAAGAATGACTT+TGG | 0.518484 | 6.3:+5965542 | None:intergenic |
| ATTGAGAAGAGTGCAAGGAT+TGG | 0.520962 | 6.3:-5965497 | MS.gene20480:CDS |
| GAATGTCACTACTGATATCA+AGG | 0.523422 | 6.3:-5968148 | MS.gene20480:CDS |
| CAAAACAGCTGTTGGAGCTG+AGG | 0.524674 | 6.3:-5965699 | MS.gene20480:CDS |
| ATGGTAGTATGAAGCATTCA+GGG | 0.525033 | 6.3:+5965739 | None:intergenic |
| ATAGTCTTGAGGCCAGGAGC+TGG | 0.527584 | 6.3:+5967238 | None:intergenic |
| GTTTGCTGTCAACCCAATGC+TGG | 0.533852 | 6.3:+5967038 | None:intergenic |
| AGTACTTGCATGACTATGCT+GGG | 0.535027 | 6.3:-5967068 | MS.gene20480:CDS |
| ATTCTTCACCATTTCTGGTG+AGG | 0.536353 | 6.3:-5965534 | MS.gene20480:CDS |
| TCAACAGCCAACAATGTCAA+AGG | 0.540959 | 6.3:-5969503 | None:intergenic |
| GGAAATAATGTAGTTGCTCT+CGG | 0.543480 | 6.3:-5966988 | MS.gene20480:CDS |
| CTAAGAATAGTCTTGAGGCC+AGG | 0.561374 | 6.3:+5967232 | None:intergenic |
| CAACAGCCAACAATGTCAAA+GGG | 0.569301 | 6.3:-5969502 | None:intergenic |
| ACTGCCTCAAGTACCAAGAA+AGG | 0.570898 | 6.3:-5968213 | MS.gene20480:CDS |
| CCAGGTCTTTACTCTGACAT+CGG | 0.572620 | 6.3:-5969478 | MS.gene20480:CDS |
| AAACTTCGATTCAACAACTT+CGG | 0.572667 | 6.3:-5965599 | MS.gene20480:CDS |
| TCGATTCAACAACTTCGGAC+TGG | 0.573533 | 6.3:-5965594 | MS.gene20480:CDS |
| AACAACTTCGGACTGGCAAG+CGG | 0.577860 | 6.3:-5965587 | MS.gene20480:CDS |
| GCGGTCTCATCCAGCACGAG+TGG | 0.581180 | 6.3:-5965568 | MS.gene20480:CDS |
| TTCTGGTGAGGTGGACACCA+AGG | 0.584182 | 6.3:-5965522 | MS.gene20480:CDS |
| CCAACAATGTCAAAGGGTCC+AGG | 0.590297 | 6.3:-5969496 | None:intergenic |
| TGCTGTCAACCCAATGCTGG+CGG | 0.599470 | 6.3:+5967041 | None:intergenic |
| GTGTTCACAAGACTTAATGC+TGG | 0.612270 | 6.3:-5966934 | MS.gene20480:CDS |
| ACCTGAACTAAAGTCTGGAA+AGG | 0.619670 | 6.3:-5967194 | MS.gene20480:intron |
| AGGCCATTGAGAAGAGTGCA+AGG | 0.634126 | 6.3:-5965502 | MS.gene20480:CDS |
| TGAAGCTAAGAATAGTCTTG+AGG | 0.655550 | 6.3:+5967227 | None:intergenic |
| GTTGAATCGAAGTTTCGCTG+TGG | 0.687494 | 6.3:+5965607 | None:intergenic |
| AATAATGTAGTTGCTCTCGG+TGG | 0.754602 | 6.3:-5966985 | MS.gene20480:CDS |
| TGTCACTACTGATATCAAGG+TGG | 0.758087 | 6.3:-5968145 | MS.gene20480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAAAAAAAAATAAAAT+TGG | + | chr6.3:5965553-5965572 | None:intergenic | 0.0% |
| !! | AAAAAAAATAAAATTGGATT+CGG | + | chr6.3:5965547-5965566 | None:intergenic | 10.0% |
| !! | TCTATATAATGATTAATAAT+TGG | - | chr6.3:5967605-5967624 | MS.gene20480:intron | 10.0% |
| !! | AAACTGATTAAAATTTGTAT+GGG | - | chr6.3:5969163-5969182 | MS.gene20480:intron | 15.0% |
| !! | AAATAAAGATACAAATAGAA+TGG | + | chr6.3:5967639-5967658 | None:intergenic | 15.0% |
| !! | AATAAAGATACAAATAGAAT+GGG | + | chr6.3:5967638-5967657 | None:intergenic | 15.0% |
| !! | CAAATAAAAAATAATACACA+AGG | + | chr6.3:5967517-5967536 | None:intergenic | 15.0% |
| !! | TTATAAAACAATAAAAACTG+TGG | + | chr6.3:5966955-5966974 | None:intergenic | 15.0% |
| !!! | AAATTTTAGATATTCTACAA+GGG | + | chr6.3:5969050-5969069 | None:intergenic | 15.0% |
| !!! | GGAAAAATAAAAGATTTTTT+GGG | - | chr6.3:5965839-5965858 | MS.gene20480:intron | 15.0% |
| !!! | TAAATTTTAGATATTCTACA+AGG | + | chr6.3:5969051-5969070 | None:intergenic | 15.0% |
| !!! | TGGAAAAATAAAAGATTTTT+TGG | - | chr6.3:5965838-5965857 | MS.gene20480:intron | 15.0% |
| !!! | TGTATTATTGATTATTATTG+TGG | - | chr6.3:5965871-5965890 | MS.gene20480:intron | 15.0% |
| !!! | TGTTTATTGTTATTGTTATT+TGG | - | chr6.3:5966310-5966329 | MS.gene20480:intron | 15.0% |
| !!! | TTTTCTTTTAATTTGTTGTT+GGG | - | chr6.3:5966284-5966303 | MS.gene20480:intron | 15.0% |
| !!! | TTTTTCTTTTAATTTGTTGT+TGG | - | chr6.3:5966283-5966302 | MS.gene20480:intron | 15.0% |
| !! | AAAAAAAAACACTGATAAAC+AGG | + | chr6.3:5968761-5968780 | None:intergenic | 20.0% |
| !! | AAATGTAGAGATTAATGATT+TGG | - | chr6.3:5966354-5966373 | MS.gene20480:intron | 20.0% |
| !! | AACTGATTAAAATTTGTATG+GGG | - | chr6.3:5969164-5969183 | MS.gene20480:intron | 20.0% |
| !! | AGTTATAGTGCAATAAATAT+TGG | + | chr6.3:5967418-5967437 | None:intergenic | 20.0% |
| !! | CAAAATCACTTTATTCTAAT+CGG | + | chr6.3:5969096-5969115 | None:intergenic | 20.0% |
| !! | GAAACTGATTAAAATTTGTA+TGG | - | chr6.3:5969162-5969181 | MS.gene20480:intron | 20.0% |
| !! | GATAAAAAAAATCCAACAAT+TGG | + | chr6.3:5966169-5966188 | None:intergenic | 20.0% |
| !! | TAAGCTAAAAAATAAGTCAA+TGG | - | chr6.3:5966117-5966136 | MS.gene20480:intron | 20.0% |
| !! | TATTCGTTATTTGAGTAATT+GGG | - | chr6.3:5965794-5965813 | MS.gene20480:intron | 20.0% |
| !! | TTATTCGTTATTTGAGTAAT+TGG | - | chr6.3:5965793-5965812 | MS.gene20480:intron | 20.0% |
| !! | TTGTTTATCAAATTAGTGAA+TGG | + | chr6.3:5967847-5967866 | None:intergenic | 20.0% |
| !!! | AAAATAAAAGATTTTTTGGG+TGG | - | chr6.3:5965842-5965861 | MS.gene20480:intron | 20.0% |
| !!! | AAAATGAAATTCACTTTTGA+AGG | + | chr6.3:5968999-5969018 | None:intergenic | 20.0% |
| !!! | AATGATTTGGATTGAAATAT+GGG | - | chr6.3:5966367-5966386 | MS.gene20480:intron | 20.0% |
| !!! | AATTTGAAATTTAAGCTAGA+AGG | - | chr6.3:5967102-5967121 | MS.gene20480:intron | 20.0% |
| !!! | AGAAATTTTGACTAATATTG+TGG | - | chr6.3:5965595-5965614 | MS.gene20480:CDS | 20.0% |
| !!! | ATTGCACTATAACTATTTTT+AGG | - | chr6.3:5967424-5967443 | MS.gene20480:intron | 20.0% |
| !!! | TAAAAGTGAAGTTTTATTGA+AGG | + | chr6.3:5968784-5968803 | None:intergenic | 20.0% |
| !!! | TAATGATTTGGATTGAAATA+TGG | - | chr6.3:5966366-5966385 | MS.gene20480:intron | 20.0% |
| !!! | TTTCTTTTAATTTGTTGTTG+GGG | - | chr6.3:5966285-5966304 | MS.gene20480:intron | 20.0% |
| !!! | TTTTAGGATGATTGTTTTAT+TGG | - | chr6.3:5965818-5965837 | MS.gene20480:intron | 20.0% |
| ! | AAAAAATCCAACAATTGGAA+AGG | + | chr6.3:5966164-5966183 | None:intergenic | 25.0% |
| ! | AAAAATCCAACAATTGGAAA+GGG | + | chr6.3:5966163-5966182 | None:intergenic | 25.0% |
| ! | ACTGATTAAAATTTGTATGG+GGG | - | chr6.3:5969165-5969184 | MS.gene20480:intron | 25.0% |
| ! | ATTAAGTAGTTAAACTAGCA+CGG | + | chr6.3:5967085-5967104 | None:intergenic | 25.0% |
| ! | ATTTGTAGCCAGTTAATAAT+TGG | - | chr6.3:5967532-5967551 | MS.gene20480:intron | 25.0% |
| ! | CATCAATTAGTAAATGATGT+TGG | + | chr6.3:5967167-5967186 | None:intergenic | 25.0% |
| ! | CATCATTTACTAATTGATGA+TGG | - | chr6.3:5967168-5967187 | MS.gene20480:intron | 25.0% |
| ! | CTTGATTGTATTCAATTTGT+GGG | - | chr6.3:5966466-5966485 | MS.gene20480:intron | 25.0% |
| ! | TCAATAAAATTCTCTTGCTT+AGG | - | chr6.3:5969130-5969149 | MS.gene20480:intron | 25.0% |
| ! | TCGTACAATTACAAATGAAT+TGG | - | chr6.3:5968546-5968565 | MS.gene20480:intron | 25.0% |
| ! | TCTACTTACTTAAATAGCAT+TGG | + | chr6.3:5968384-5968403 | None:intergenic | 25.0% |
| ! | TTACATTGCCAATTATTAAC+TGG | + | chr6.3:5967543-5967562 | None:intergenic | 25.0% |
| !! | ATTTGAGTAATTGGGTTTTT+AGG | - | chr6.3:5965802-5965821 | MS.gene20480:intron | 25.0% |
| !! | CCATTTTCTCAAATTAATTC+AGG | - | chr6.3:5966678-5966697 | MS.gene20480:intron | 25.0% |
| !! | CCTGAATTAATTTGAGAAAA+TGG | + | chr6.3:5966681-5966700 | None:intergenic | 25.0% |
| !!! | CATTTTTTTACCTTGAAGAA+CGG | - | chr6.3:5968816-5968835 | MS.gene20480:intron | 25.0% |
| !!! | GGATTTTTTTTATCTGAGTT+GGG | - | chr6.3:5966175-5966194 | MS.gene20480:intron | 25.0% |
| !!! | TGGATTTTTTTTATCTGAGT+TGG | - | chr6.3:5966174-5966193 | MS.gene20480:intron | 25.0% |
| !!! | TTTTTTTTTCACTGTTCTGT+TGG | - | chr6.3:5966893-5966912 | MS.gene20480:CDS | 25.0% |
| AAAAAACTCACAATTCCAGT+AGG | + | chr6.3:5965700-5965719 | None:intergenic | 30.0% | |
| AAACAGACAACTCAGAAAAT+AGG | + | chr6.3:5968664-5968683 | None:intergenic | 30.0% | |
| AAACTTCGATTCAACAACTT+CGG | - | chr6.3:5969363-5969382 | MS.gene20480:intron | 30.0% | |
| AAAGTATGTCACTGCAAAAT+TGG | - | chr6.3:5967219-5967238 | MS.gene20480:CDS | 30.0% | |
| AACAAATTACCGTATGAAAC+AGG | - | chr6.3:5967862-5967881 | MS.gene20480:intron | 30.0% | |
| AAGATTTGTAGATGCATGAA+AGG | - | chr6.3:5966214-5966233 | MS.gene20480:intron | 30.0% | |
| AGAGAGACATACTATAAAGT+AGG | + | chr6.3:5967301-5967320 | None:intergenic | 30.0% | |
| ATAATTGGCAATGTAAAGCA+CGG | - | chr6.3:5967547-5967566 | MS.gene20480:intron | 30.0% | |
| GACATGATACTTTAGATTGA+AGG | - | chr6.3:5966579-5966598 | MS.gene20480:intron | 30.0% | |
| GAGAGACATACTATAAAGTA+GGG | + | chr6.3:5967300-5967319 | None:intergenic | 30.0% | |
| GCTTGATTGTATTCAATTTG+TGG | - | chr6.3:5966465-5966484 | MS.gene20480:intron | 30.0% | |
| GGTAACCTAATCAAAATTGA+GGG | + | chr6.3:5967063-5967082 | None:intergenic | 30.0% | |
| GTAAGTTCATGATTCTTTCT+CGG | - | chr6.3:5966854-5966873 | MS.gene20480:intron | 30.0% | |
| TAGCTGTGTCTTTAGATATA+GGG | - | chr6.3:5968735-5968754 | MS.gene20480:intron | 30.0% | |
| TATTATTGTGGTAGCAATGT+CGG | - | chr6.3:5965883-5965902 | MS.gene20480:intron | 30.0% | |
| TATTCTAATCGGTAACAAAC+AGG | + | chr6.3:5969085-5969104 | None:intergenic | 30.0% | |
| TATTGCAGATCTTCTTTACA+AGG | - | chr6.3:5965633-5965652 | MS.gene20480:CDS | 30.0% | |
| TGGGTTATGATAGAACATTA+TGG | - | chr6.3:5966386-5966405 | MS.gene20480:intron | 30.0% | |
| TGTTAAACAACAACACATGT+TGG | - | chr6.3:5968443-5968462 | MS.gene20480:intron | 30.0% | |
| TTAAAATTTGTATGGGGGTA+TGG | - | chr6.3:5969170-5969189 | MS.gene20480:intron | 30.0% | |
| TTAAGTAGTTAAACTAGCAC+GGG | + | chr6.3:5967084-5967103 | None:intergenic | 30.0% | |
| TTATGTTCATAAGCTTGTCA+AGG | - | chr6.3:5965991-5966010 | MS.gene20480:intron | 30.0% | |
| ! | AGTTGGGATGATTTTTGTAT+TGG | - | chr6.3:5966191-5966210 | MS.gene20480:intron | 30.0% |
| ! | TCTATTTTACATCTGCCATA+TGG | + | chr6.3:5967129-5967148 | None:intergenic | 30.0% |
| !! | CTTCATATTTTAAGCAGCTT+TGG | + | chr6.3:5968926-5968945 | None:intergenic | 30.0% |
| !!! | GTTTTCTGTTTAACTTGTCA+TGG | - | chr6.3:5966915-5966934 | MS.gene20480:CDS | 30.0% |
| !!! | TGTTGTGATTTTTTGTGAAG+TGG | - | chr6.3:5966244-5966263 | MS.gene20480:intron | 30.0% |
| !!! | TTTTTTCCCTTTCCAATTGT+TGG | - | chr6.3:5966154-5966173 | MS.gene20480:intron | 30.0% |
| AAAGAAAACACACTCACTCT+TGG | - | chr6.3:5969306-5969325 | MS.gene20480:CDS | 35.0% | |
| AACGTTCTGTTAGAAAGAGA+CGG | + | chr6.3:5968107-5968126 | None:intergenic | 35.0% | |
| AAGTCATTCTTCACCATTTC+TGG | - | chr6.3:5969423-5969442 | MS.gene20480:intron | 35.0% | |
| ACAACATTGCTATCACTTAG+GGG | + | chr6.3:5966435-5966454 | None:intergenic | 35.0% | |
| ACTGCAAAATTGGAATGGAA+AGG | - | chr6.3:5967229-5967248 | MS.gene20480:CDS | 35.0% | |
| AGTGAGATTATAGGTCTGTT+TGG | - | chr6.3:5965916-5965935 | MS.gene20480:intron | 35.0% | |
| ATAAACACACCTAATCCCAT+AGG | - | chr6.3:5968897-5968916 | MS.gene20480:intron | 35.0% | |
| ATGTCACTGCAAAATTGGAA+TGG | - | chr6.3:5967224-5967243 | MS.gene20480:CDS | 35.0% | |
| CAAAAAAAGCTCACCTTTCT+TGG | + | chr6.3:5966765-5966784 | None:intergenic | 35.0% | |
| CACAACATTGCTATCACTTA+GGG | + | chr6.3:5966436-5966455 | None:intergenic | 35.0% | |
| CATAAACAGCCACAAAAAGA+GGG | + | chr6.3:5966720-5966739 | None:intergenic | 35.0% | |
| CTTTCTTATGACACCAAAAC+TGG | - | chr6.3:5968004-5968023 | MS.gene20480:intron | 35.0% | |
| GAAATGGTGAAGAATGACTT+TGG | + | chr6.3:5969423-5969442 | None:intergenic | 35.0% | |
| GAATGTCACTACTGATATCA+AGG | - | chr6.3:5966814-5966833 | MS.gene20480:intron | 35.0% | |
| GATTATAGGTCTGTTTGGAT+CGG | - | chr6.3:5965921-5965940 | MS.gene20480:intron | 35.0% | |
| GGAAATAATGTAGTTGCTCT+CGG | - | chr6.3:5967974-5967993 | MS.gene20480:intron | 35.0% | |
| GGGTAACCTAATCAAAATTG+AGG | + | chr6.3:5967064-5967083 | None:intergenic | 35.0% | |
| GTAGCTGTGTCTTTAGATAT+AGG | - | chr6.3:5968734-5968753 | MS.gene20480:intron | 35.0% | |
| TACATGAGTCAATGTTGTGT+CGG | - | chr6.3:5968280-5968299 | MS.gene20480:intron | 35.0% | |
| TAGATTCTTTCAGTCTCCAA+TGG | - | chr6.3:5967815-5967834 | MS.gene20480:intron | 35.0% | |
| TCAAGACTATTCTTAGCTTC+AGG | - | chr6.3:5967737-5967756 | MS.gene20480:intron | 35.0% | |
| TCAATTTGTGGGTGTGTTTA+TGG | - | chr6.3:5966477-5966496 | MS.gene20480:intron | 35.0% | |
| TCCAATAACACCAGAAAAGT+TGG | + | chr6.3:5967957-5967976 | None:intergenic | 35.0% | |
| TGTGGTGTAAGTGAGATTAT+AGG | - | chr6.3:5965907-5965926 | MS.gene20480:intron | 35.0% | |
| TTTAAGCTAGAAGGTCCATA+TGG | - | chr6.3:5967111-5967130 | MS.gene20480:intron | 35.0% | |
| ! | AAGAGTGAGTGTGTTTTCTT+TGG | + | chr6.3:5969307-5969326 | None:intergenic | 35.0% |
| ! | ATGCTTGATTGATAGCAATG+CGG | - | chr6.3:5966531-5966550 | MS.gene20480:intron | 35.0% |
| ! | ATGGTAGTATGAAGCATTCA+GGG | + | chr6.3:5969226-5969245 | None:intergenic | 35.0% |
| ! | GTGCGTTTAATCTGAAATGT+TGG | - | chr6.3:5968475-5968494 | MS.gene20480:intron | 35.0% |
| ! | TAGCATTTTGTGAACTTGAG+AGG | - | chr6.3:5968603-5968622 | MS.gene20480:intron | 35.0% |
| ! | TGAAGCTAAGAATAGTCTTG+AGG | + | chr6.3:5967738-5967757 | None:intergenic | 35.0% |
| !! | ATTTGTTATGCAGTTGGGTT+GGG | - | chr6.3:5967031-5967050 | MS.gene20480:CDS | 35.0% |
| !! | TATTTGTTATGCAGTTGGGT+TGG | - | chr6.3:5967030-5967049 | MS.gene20480:CDS | 35.0% |
| !! | TGCGTATTTGTTATGCAGTT+GGG | - | chr6.3:5967026-5967045 | MS.gene20480:CDS | 35.0% |
| !!! | CAAGAAAGGTGAGCTTTTTT+TGG | - | chr6.3:5966763-5966782 | MS.gene20480:intron | 35.0% |
| AAGTAGTGAGAGTGAACTTC+TGG | + | chr6.3:5965672-5965691 | None:intergenic | 40.0% | |
| AATAATGTAGTTGCTCTCGG+TGG | - | chr6.3:5967977-5967996 | MS.gene20480:intron | 40.0% | |
| ACACCAGAAAAGTTGGCAAT+TGG | + | chr6.3:5967950-5967969 | None:intergenic | 40.0% | |
| ACATGTAAATGCTAGTGTCG+TGG | + | chr6.3:5968356-5968375 | None:intergenic | 40.0% | |
| ACCTGAACTAAAGTCTGGAA+AGG | - | chr6.3:5967768-5967787 | MS.gene20480:intron | 40.0% | |
| ACGTTCTGTTAGAAAGAGAC+GGG | + | chr6.3:5968106-5968125 | None:intergenic | 40.0% | |
| AGATGCAAACAGTCGAGATA+AGG | - | chr6.3:5967455-5967474 | MS.gene20480:intron | 40.0% | |
| AGTACTTGCATGACTATGCT+GGG | - | chr6.3:5967894-5967913 | MS.gene20480:intron | 40.0% | |
| ATGCAAACAGTCGAGATAAG+GGG | - | chr6.3:5967457-5967476 | MS.gene20480:intron | 40.0% | |
| ATGCCTCATCTAACTAGGTA+AGG | + | chr6.3:5968699-5968718 | None:intergenic | 40.0% | |
| CAACCTTACCTAGTTAGATG+AGG | - | chr6.3:5968693-5968712 | MS.gene20480:intron | 40.0% | |
| CACCAGAAAAGTTGGCAATT+GGG | + | chr6.3:5967949-5967968 | None:intergenic | 40.0% | |
| CAGTTCATCACAAAACCAAC+TGG | + | chr6.3:5966508-5966527 | None:intergenic | 40.0% | |
| CCTAATCAAAATTGAGGGAG+TGG | + | chr6.3:5967058-5967077 | None:intergenic | 40.0% | |
| CGAAGCAATCAAATCGTCTT+TGG | + | chr6.3:5968065-5968084 | None:intergenic | 40.0% | |
| CTCACTACTTATTCACCTAC+TGG | - | chr6.3:5965682-5965701 | MS.gene20480:CDS | 40.0% | |
| CTGTAATGCCTCATCTAACT+AGG | + | chr6.3:5968704-5968723 | None:intergenic | 40.0% | |
| GAACTTCAGCCTGTTTCATA+CGG | + | chr6.3:5967874-5967893 | None:intergenic | 40.0% | |
| GATCGACAGATATTGATGTG+TGG | + | chr6.3:5967587-5967606 | None:intergenic | 40.0% | |
| GATGCAAACAGTCGAGATAA+GGG | - | chr6.3:5967456-5967475 | MS.gene20480:intron | 40.0% | |
| GCACAACATTGCTATCACTT+AGG | + | chr6.3:5966437-5966456 | None:intergenic | 40.0% | |
| GCATAAACAGCCACAAAAAG+AGG | + | chr6.3:5966721-5966740 | None:intergenic | 40.0% | |
| GTGTTCACAAGACTTAATGC+TGG | - | chr6.3:5968028-5968047 | MS.gene20480:intron | 40.0% | |
| GTGTTTATGGTTTGACCAGT+TGG | - | chr6.3:5966490-5966509 | MS.gene20480:intron | 40.0% | |
| TACACGAGTCAATGTTGTGT+CGG | - | chr6.3:5968420-5968439 | MS.gene20480:intron | 40.0% | |
| TAGTGAATGGTGCTTTCCAT+TGG | + | chr6.3:5967834-5967853 | None:intergenic | 40.0% | |
| TGCAAGGATTGGAATAGCTT+TGG | - | chr6.3:5969476-5969495 | MS.gene20480:CDS | 40.0% | |
| TGTCACTACTGATATCAAGG+TGG | - | chr6.3:5966817-5966836 | MS.gene20480:intron | 40.0% | |
| TTCATGATTCTTTCTCGGCT+GGG | - | chr6.3:5966859-5966878 | MS.gene20480:intron | 40.0% | |
| TTGTCAGAATCCGTTCTTCA+AGG | + | chr6.3:5968829-5968848 | None:intergenic | 40.0% | |
| ! | AAATTGGAATGGAAAGGCGT+TGG | - | chr6.3:5967235-5967254 | MS.gene20480:CDS | 40.0% |
| ! | AACCCAATTGCCAACTTTTC+TGG | - | chr6.3:5967944-5967963 | MS.gene20480:intron | 40.0% |
| ! | AATTCAGGCTTTGACTCCTT+TGG | - | chr6.3:5966693-5966712 | MS.gene20480:intron | 40.0% |
| ! | ACCTTTCCAGACTTTAGTTC+AGG | + | chr6.3:5967772-5967791 | None:intergenic | 40.0% |
| ! | CATGGTAGTATGAAGCATTC+AGG | + | chr6.3:5969227-5969246 | None:intergenic | 40.0% |
| ! | CTTTAGATTGAAGGTGTGTC+TGG | - | chr6.3:5966588-5966607 | MS.gene20480:intron | 40.0% |
| ! | CTTTTTGTGGCTGTTTATGC+AGG | - | chr6.3:5966721-5966740 | MS.gene20480:intron | 40.0% |
| !! | ATTCTTCACCATTTCTGGTG+AGG | - | chr6.3:5969428-5969447 | MS.gene20480:intron | 40.0% |
| !! | GTGCGTATTTGTTATGCAGT+TGG | - | chr6.3:5967025-5967044 | MS.gene20480:CDS | 40.0% |
| !! | TGGTAATGGGATTGACTACA+TGG | + | chr6.3:5969245-5969264 | None:intergenic | 40.0% |
| !!! | CCAACAGCTGTTTTGGTAAT+GGG | + | chr6.3:5969258-5969277 | None:intergenic | 40.0% |
| !!! | CCACTCCCTCAATTTTGATT+AGG | - | chr6.3:5967055-5967074 | MS.gene20480:CDS | 40.0% |
| !!! | GCCAACTTTTCTGGTGTTAT+TGG | - | chr6.3:5967953-5967972 | MS.gene20480:intron | 40.0% |
| !!! | TCCAACAGCTGTTTTGGTAA+TGG | + | chr6.3:5969259-5969278 | None:intergenic | 40.0% |
| ACACAAGGTAGCACACAACA+TGG | + | chr6.3:5967502-5967521 | None:intergenic | 45.0% | |
| ACTGCCTCAAGTACCAAGAA+AGG | - | chr6.3:5966749-5966768 | MS.gene20480:intron | 45.0% | |
| CAGTACTTGCATGACTATGC+TGG | - | chr6.3:5967893-5967912 | MS.gene20480:intron | 45.0% | |
| CCAGGTCTTTACTCTGACAT+CGG | - | chr6.3:5965484-5965503 | MS.gene20480:CDS | 45.0% | |
| CCCATTACCAAAACAGCTGT+TGG | - | chr6.3:5969255-5969274 | MS.gene20480:intron | 45.0% | |
| CCTGAACCTGAACTAAAGTC+TGG | - | chr6.3:5967763-5967782 | MS.gene20480:intron | 45.0% | |
| CTCACCTTTCTTGGTACTTG+AGG | + | chr6.3:5966756-5966775 | None:intergenic | 45.0% | |
| CTTTGGACACCTATGGGATT+AGG | + | chr6.3:5968909-5968928 | None:intergenic | 45.0% | |
| GACATCGGAAAAAAAGCCAG+AGG | - | chr6.3:5965499-5965518 | MS.gene20480:CDS | 45.0% | |
| GCTTTACTACCGTTGCAAAG+CGG | - | chr6.3:5966979-5966998 | MS.gene20480:CDS | 45.0% | |
| GTGATAGCAATGTTGTGCTG+TGG | - | chr6.3:5966439-5966458 | MS.gene20480:intron | 45.0% | |
| GTTCATGATTCTTTCTCGGC+TGG | - | chr6.3:5966858-5966877 | MS.gene20480:intron | 45.0% | |
| GTTGAATCGAAGTTTCGCTG+TGG | + | chr6.3:5969358-5969377 | None:intergenic | 45.0% | |
| TAGTGTCGTGATCAGTGTCA+GGG | + | chr6.3:5968204-5968223 | None:intergenic | 45.0% | |
| TAGTGTCGTGGTTAGTGTCA+TGG | + | chr6.3:5968344-5968363 | None:intergenic | 45.0% | |
| TCGAGATAAGGGGCAACTTT+AGG | - | chr6.3:5967467-5967486 | MS.gene20480:intron | 45.0% | |
| TCGATTCAACAACTTCGGAC+TGG | - | chr6.3:5969368-5969387 | MS.gene20480:intron | 45.0% | |
| TGTCGGACAACAACACATGT+TGG | - | chr6.3:5968303-5968322 | MS.gene20480:intron | 45.0% | |
| TTAGTGTCGTGATCAGTGTC+AGG | + | chr6.3:5968205-5968224 | None:intergenic | 45.0% | |
| ! | AGTCAATGTTGTGTCGGTGT+CGG | - | chr6.3:5968286-5968305 | MS.gene20480:intron | 45.0% |
| ! | CCAGACTTTAGTTCAGGTTC+AGG | + | chr6.3:5967766-5967785 | None:intergenic | 45.0% |
| ! | CTAAGAATAGTCTTGAGGCC+AGG | + | chr6.3:5967733-5967752 | None:intergenic | 45.0% |
| ! | TAGATTGAAGGTGTGTCTGG+TGG | - | chr6.3:5966591-5966610 | MS.gene20480:intron | 45.0% |
| ! | TCCTTTGGACCCTCTTTTTG+TGG | - | chr6.3:5966708-5966727 | MS.gene20480:intron | 45.0% |
| ! | TCTGAAATGTTGGTGCGTTG+TGG | - | chr6.3:5968485-5968504 | MS.gene20480:intron | 45.0% |
| ! | TCTTGTGAACACGCCAGTTT+TGG | + | chr6.3:5968020-5968039 | None:intergenic | 45.0% |
| !! | AAGCAGCTTTGGACACCTAT+GGG | + | chr6.3:5968915-5968934 | None:intergenic | 45.0% |
| !! | TAAGCAGCTTTGGACACCTA+TGG | + | chr6.3:5968916-5968935 | None:intergenic | 45.0% |
| ACTGTTAATGAGCCAGCTCC+TGG | - | chr6.3:5967712-5967731 | MS.gene20480:intron | 50.0% | |
| CAAAACAGCTGTTGGAGCTG+AGG | - | chr6.3:5969263-5969282 | MS.gene20480:intron | 50.0% | |
| CCGATGTCAGAGTAAAGACC+TGG | + | chr6.3:5965487-5965506 | None:intergenic | 50.0% | |
| CGGAGAGAGAGTGAGAAAGA+GGG | + | chr6.3:5965527-5965546 | None:intergenic | 50.0% | |
| GCCACAAAAAGAGGGTCCAA+AGG | + | chr6.3:5966712-5966731 | None:intergenic | 50.0% | |
| GGGGTATGGTAAATGCATGC+AGG | - | chr6.3:5969184-5969203 | MS.gene20480:intron | 50.0% | |
| TCACTTAGGGGTCAGCTACA+TGG | + | chr6.3:5966423-5966442 | None:intergenic | 50.0% | |
| TCGGAGAGAGAGTGAGAAAG+AGG | + | chr6.3:5965528-5965547 | None:intergenic | 50.0% | |
| TTGGTGCGTTGTGGTAGCTT+TGG | - | chr6.3:5968494-5968513 | MS.gene20480:intron | 50.0% | |
| ! | ACCGTTGCAAAGCGGCTTTT+TGG | - | chr6.3:5966987-5967006 | MS.gene20480:CDS | 50.0% |
| ! | CTCAGCTCCAACAGCTGTTT+TGG | + | chr6.3:5969265-5969284 | None:intergenic | 50.0% |
| ! | GCCAAAAAGCCGCTTTGCAA+CGG | + | chr6.3:5966991-5967010 | None:intergenic | 50.0% |
| ! | TGTGGTAGCAATGTCGGTTG+TGG | - | chr6.3:5965889-5965908 | MS.gene20480:intron | 50.0% |
| !! | AACAACTTCGGACTGGCAAG+CGG | - | chr6.3:5969375-5969394 | MS.gene20480:intron | 50.0% |
| !! | AGTGAGAAAGAGGGTACCTC+TGG | + | chr6.3:5965518-5965537 | None:intergenic | 50.0% |
| !! | CTTCACCATTTCTGGTGAGG+TGG | - | chr6.3:5969431-5969450 | MS.gene20480:intron | 50.0% |
| !! | GTTTGCTGTCAACCCAATGC+TGG | + | chr6.3:5967927-5967946 | None:intergenic | 50.0% |
| CTGGGATTTCCGCCAGCATT+GGG | - | chr6.3:5967912-5967931 | MS.gene20480:intron | 55.0% | |
| GGTGTCCACCTCACCAGAAA+TGG | + | chr6.3:5969439-5969458 | None:intergenic | 55.0% | |
| TGCTGTCAACCCAATGCTGG+CGG | + | chr6.3:5967924-5967943 | None:intergenic | 55.0% | |
| TTCTGGTGAGGTGGACACCA+AGG | - | chr6.3:5969440-5969459 | MS.gene20480:intron | 55.0% | |
| ! | ATAGTCTTGAGGCCAGGAGC+TGG | + | chr6.3:5967727-5967746 | None:intergenic | 55.0% |
| ACTTTGGACGCCACTCGTGC+TGG | + | chr6.3:5969407-5969426 | None:intergenic | 60.0% | |
| GCTGGGATTTCCGCCAGCAT+TGG | - | chr6.3:5967911-5967930 | MS.gene20480:intron | 60.0% | |
| GCGGTCTCATCCAGCACGAG+TGG | - | chr6.3:5969394-5969413 | MS.gene20480:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 5965472 | 5969512 | 5965472 | ID=MS.gene20480 |
| chr6.3 | mRNA | 5965472 | 5969512 | 5965472 | ID=MS.gene20480.t1;Parent=MS.gene20480 |
| chr6.3 | exon | 5969464 | 5969512 | 5969464 | ID=MS.gene20480.t1.exon1;Parent=MS.gene20480.t1 |
| chr6.3 | CDS | 5969464 | 5969512 | 5969464 | ID=cds.MS.gene20480.t1;Parent=MS.gene20480.t1 |
| chr6.3 | exon | 5969276 | 5969343 | 5969276 | ID=MS.gene20480.t1.exon2;Parent=MS.gene20480.t1 |
| chr6.3 | CDS | 5969276 | 5969343 | 5969276 | ID=cds.MS.gene20480.t1;Parent=MS.gene20480.t1 |
| chr6.3 | exon | 5968131 | 5968241 | 5968131 | ID=MS.gene20480.t1.exon3;Parent=MS.gene20480.t1 |
| chr6.3 | CDS | 5968131 | 5968241 | 5968131 | ID=cds.MS.gene20480.t1;Parent=MS.gene20480.t1 |
| chr6.3 | exon | 5967195 | 5967287 | 5967195 | ID=MS.gene20480.t1.exon4;Parent=MS.gene20480.t1 |
| chr6.3 | CDS | 5967195 | 5967287 | 5967195 | ID=cds.MS.gene20480.t1;Parent=MS.gene20480.t1 |
| chr6.3 | exon | 5966892 | 5967100 | 5966892 | ID=MS.gene20480.t1.exon5;Parent=MS.gene20480.t1 |
| chr6.3 | CDS | 5966892 | 5967100 | 5966892 | ID=cds.MS.gene20480.t1;Parent=MS.gene20480.t1 |
| chr6.3 | exon | 5965472 | 5965778 | 5965472 | ID=MS.gene20480.t1.exon6;Parent=MS.gene20480.t1 |
| chr6.3 | CDS | 5965472 | 5965778 | 5965472 | ID=cds.MS.gene20480.t1;Parent=MS.gene20480.t1 |
| Gene Sequence |
| Protein sequence |
