Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030985.t1 | XP_013450932.1 | 98.6 | 278 | 4 | 0 | 1 | 278 | 1 | 278 | 2.40E-149 | 538.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030985.t1 | P42054 | 72.7 | 278 | 74 | 1 | 1 | 278 | 1 | 276 | 3.3e-115 | 416.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030985.t1 | I3S1P8 | 98.6 | 278 | 4 | 0 | 1 | 278 | 1 | 278 | 1.7e-149 | 538.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene015254 | MS.gene030985 | PPI |
| MS.gene09596 | MS.gene030985 | PPI |
| MS.gene43545 | MS.gene030985 | PPI |
| MS.gene20294 | MS.gene030985 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030985.t1 | MTR_6g011390 | 98.561 | 278 | 4 | 0 | 1 | 278 | 1 | 278 | 0.0 | 556 |
| MS.gene030985.t1 | MTR_7g009330 | 68.592 | 277 | 85 | 1 | 2 | 278 | 3 | 277 | 3.99e-144 | 405 |
| MS.gene030985.t1 | MTR_8g469150 | 61.871 | 278 | 104 | 1 | 1 | 278 | 1 | 276 | 3.50e-127 | 363 |
| MS.gene030985.t1 | MTR_8g469150 | 61.710 | 269 | 101 | 1 | 1 | 269 | 1 | 267 | 2.45e-121 | 348 |
| MS.gene030985.t1 | MTR_5g015580 | 49.281 | 278 | 139 | 1 | 1 | 278 | 1 | 276 | 1.55e-91 | 272 |
| MS.gene030985.t1 | MTR_4g128300 | 45.552 | 281 | 148 | 3 | 1 | 278 | 1 | 279 | 8.07e-78 | 238 |
| MS.gene030985.t1 | MTR_1g018205 | 44.404 | 277 | 152 | 1 | 2 | 278 | 3 | 277 | 4.09e-76 | 233 |
| MS.gene030985.t1 | MTR_4g107840 | 32.632 | 285 | 144 | 5 | 1 | 278 | 1 | 244 | 1.50e-44 | 151 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030985.t1 | AT3G01280 | 65.108 | 278 | 95 | 1 | 1 | 278 | 1 | 276 | 3.72e-139 | 393 |
| MS.gene030985.t1 | AT5G15090 | 65.108 | 278 | 93 | 2 | 1 | 278 | 1 | 274 | 1.81e-134 | 381 |
| MS.gene030985.t1 | AT5G15090 | 65.108 | 278 | 93 | 2 | 1 | 278 | 1 | 274 | 1.81e-134 | 381 |
| MS.gene030985.t1 | AT5G67500 | 47.482 | 278 | 144 | 1 | 1 | 278 | 1 | 276 | 1.19e-92 | 275 |
| MS.gene030985.t1 | AT5G67500 | 46.840 | 269 | 141 | 1 | 1 | 269 | 1 | 267 | 3.65e-87 | 262 |
| MS.gene030985.t1 | AT5G67500 | 43.279 | 305 | 144 | 2 | 1 | 278 | 1 | 303 | 1.40e-86 | 261 |
| MS.gene030985.t1 | AT5G57490 | 44.604 | 278 | 150 | 2 | 1 | 278 | 1 | 274 | 3.80e-81 | 246 |
| MS.gene030985.t1 | AT3G49920 | 35.612 | 278 | 127 | 2 | 1 | 278 | 1 | 226 | 2.39e-53 | 173 |
| MS.gene030985.t1 | AT5G37610 | 37.349 | 166 | 98 | 3 | 113 | 276 | 2 | 163 | 6.11e-26 | 100 |
| MS.gene030985.t1 | AT3G49920 | 45.133 | 113 | 62 | 0 | 1 | 113 | 1 | 113 | 7.51e-26 | 99.4 |
| MS.gene030985.t1 | AT3G49920 | 45.133 | 113 | 62 | 0 | 1 | 113 | 1 | 113 | 7.51e-26 | 99.4 |
| MS.gene030985.t1 | AT3G49920 | 54.545 | 77 | 35 | 0 | 1 | 77 | 1 | 77 | 1.68e-23 | 92.4 |
Find 55 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCATTCTTCACCATTTC+TGG | 0.094067 | 6.2:-5537544 | MS.gene030985:CDS |
| GAAATGGTGAAGAATGATTT+TGG | 0.230254 | 6.2:+5537547 | None:intergenic |
| TGCACTCTTCTCAATGGCCT+TGG | 0.292656 | 6.2:+5537510 | None:intergenic |
| CATGGTAGTACGAAGCATTC+AGG | 0.324216 | 6.2:+5537743 | None:intergenic |
| CCAGACTTTAGTTCAGGTTC+AGG | 0.331087 | 6.2:+5539202 | None:intergenic |
| ACACCAGAAAAGTTGGCAAT+TGG | 0.338198 | 6.2:+5539018 | None:intergenic |
| CTTTCTTATGACACCAAAAC+TGG | 0.346527 | 6.2:-5538961 | MS.gene030985:CDS |
| TCAAGACTATTCTTAGCTTC+AGG | 0.359070 | 6.2:-5539228 | MS.gene030985:CDS |
| TCTTGTGAACACGCCAGTTT+TGG | 0.359359 | 6.2:+5538948 | None:intergenic |
| AAGTAGTGAGAGTGAACTTC+TGG | 0.367066 | 6.2:+5541307 | None:intergenic |
| CACCAGAAAAGTTGGCAATT+GGG | 0.385907 | 6.2:+5539019 | None:intergenic |
| ACCTTTCCAGACTTTAGTTC+AGG | 0.409767 | 6.2:+5539196 | None:intergenic |
| TGCAAGAATTGGAATAGCTT+TGG | 0.416994 | 6.2:-5537491 | MS.gene030985:CDS |
| TCCAATAACACCAGAAAAGT+TGG | 0.423097 | 6.2:+5539011 | None:intergenic |
| CTGGGATTTCCGCCAGCATT+GGG | 0.423944 | 6.2:-5539053 | MS.gene030985:CDS |
| ATTGAGAAGAGTGCAAGAAT+TGG | 0.429625 | 6.2:-5537502 | MS.gene030985:CDS |
| GGTGTCCACCTCACCAGAAA+TGG | 0.430124 | 6.2:+5537531 | None:intergenic |
| GCTGGGATTTCCGCCAGCAT+TGG | 0.432425 | 6.2:-5539054 | MS.gene030985:CDS |
| CTCACTACTTATTCACCTAC+TGG | 0.441736 | 6.2:-5541294 | MS.gene030985:CDS |
| AATTCTTGCACTCTTCTCAA+TGG | 0.442907 | 6.2:+5537504 | None:intergenic |
| CAGTACTTGCATGACTATGC+TGG | 0.447339 | 6.2:-5539072 | MS.gene030985:CDS |
| ACTGTTAATGAGCCAGCTCC+TGG | 0.450210 | 6.2:-5539253 | MS.gene030985:CDS |
| CCTGAACCTGAACTAAAGTC+TGG | 0.459932 | 6.2:-5539202 | MS.gene030985:CDS |
| TATTGCAGATCTTCTTTACA+AGG | 0.467342 | 6.2:-5541343 | MS.gene030985:intron |
| TAGTAATGGGATTGACTACA+TGG | 0.484241 | 6.2:+5537725 | None:intergenic |
| CCCATTACTAAAACAGCTGT+TGG | 0.486039 | 6.2:-5537712 | MS.gene030985:CDS |
| CTTCACCATTTCTGGTGAGG+TGG | 0.514326 | 6.2:-5537536 | MS.gene030985:CDS |
| CTCACCTTTCTTGGTACTTG+AGG | 0.516518 | 6.2:+5540175 | None:intergenic |
| CCGATGTCAGAGTAGAGACC+TGG | 0.523110 | 6.2:+5541488 | None:intergenic |
| GAATGTCACTACTGATATCA+AGG | 0.523422 | 6.2:-5540114 | MS.gene030985:CDS |
| ATAGTCTTGAGGCCAGGAGC+TGG | 0.527584 | 6.2:+5539241 | None:intergenic |
| ATGGTAGTACGAAGCATTCA+GGG | 0.530476 | 6.2:+5537744 | None:intergenic |
| GTTTGCTGTCAACCCAATGC+TGG | 0.533852 | 6.2:+5539041 | None:intergenic |
| AGTACTTGCATGACTATGCT+GGG | 0.535027 | 6.2:-5539071 | MS.gene030985:CDS |
| GGAAATAATGTAGTTGCTCT+CGG | 0.543480 | 6.2:-5538991 | MS.gene030985:CDS |
| TCAACAACCAACAATGTCAA+AGG | 0.549726 | 6.2:-5541513 | None:intergenic |
| ATTCTTCACCATTTCTGGTG+AGG | 0.552957 | 6.2:-5537539 | MS.gene030985:CDS |
| CTAAGAATAGTCTTGAGGCC+AGG | 0.561374 | 6.2:+5539235 | None:intergenic |
| CAACAACCAACAATGTCAAA+GGG | 0.564550 | 6.2:-5541512 | None:intergenic |
| AAAGAAAACACACTCACACT+TGG | 0.565898 | 6.2:-5537661 | MS.gene030985:CDS |
| CCAGGTCTCTACTCTGACAT+CGG | 0.570066 | 6.2:-5541488 | MS.gene030985:CDS |
| ACTGCCTCAAGTACCAAGAA+AGG | 0.570898 | 6.2:-5540179 | MS.gene030985:CDS |
| AAGCTTCGATTCAACAACTT+CGG | 0.572667 | 6.2:-5537604 | MS.gene030985:CDS |
| TCGATTCAACAACTTCGGAC+TGG | 0.577522 | 6.2:-5537599 | MS.gene030985:CDS |
| TAAAACAGCTGTTGGAGCTG+AGG | 0.577802 | 6.2:-5537704 | MS.gene030985:CDS |
| AACAACTTCGGACTGGCAAG+CGG | 0.577860 | 6.2:-5537592 | MS.gene030985:CDS |
| GCGGTCTCATCCAGCACGAG+TGG | 0.581180 | 6.2:-5537573 | MS.gene030985:CDS |
| TTCTGGTGAGGTGGACACCA+AGG | 0.584182 | 6.2:-5537527 | MS.gene030985:CDS |
| TGCTGTCAACCCAATGCTGG+CGG | 0.599470 | 6.2:+5539044 | None:intergenic |
| GTGTTCACAAGACTTAATGC+TGG | 0.612270 | 6.2:-5538937 | MS.gene030985:CDS |
| CCAACAATGTCAAAGGGTCC+AGG | 0.613260 | 6.2:-5541506 | None:intergenic |
| ACCTGAACTAAAGTCTGGAA+AGG | 0.619670 | 6.2:-5539197 | MS.gene030985:intron |
| TGAAGCTAAGAATAGTCTTG+AGG | 0.655550 | 6.2:+5539230 | None:intergenic |
| AATAATGTAGTTGCTCTCGG+TGG | 0.754602 | 6.2:-5538988 | MS.gene030985:CDS |
| TGTCACTACTGATATCAAGG+TGG | 0.758087 | 6.2:-5540111 | MS.gene030985:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAAAAAAAATTAAAAT+TGG | + | chr6.2:5537558-5537577 | None:intergenic | 0.0% |
| !! | AAAAAAATTAAAATTGGATT+CGG | + | chr6.2:5537552-5537571 | None:intergenic | 10.0% |
| !! | TCTATATAATGATTAATAAT+TGG | - | chr6.2:5539617-5539636 | MS.gene030985:intron | 10.0% |
| !!! | GAAAAATAAAAGATTTTTTT+GGG | - | chr6.2:5537823-5537842 | MS.gene030985:intron | 10.0% |
| !! | AAACTGATTAAAATTTGTAT+GGG | - | chr6.2:5541173-5541192 | MS.gene030985:intron | 15.0% |
| !! | AAATAAAGATACAAATAGAA+TGG | + | chr6.2:5539651-5539670 | None:intergenic | 15.0% |
| !! | AATAAAGATACAAATAGAAT+GGG | + | chr6.2:5539650-5539669 | None:intergenic | 15.0% |
| !! | CAAATAAAAAATAATACACA+AGG | + | chr6.2:5539529-5539548 | None:intergenic | 15.0% |
| !! | TTATAAAACAATAAAAACTG+TGG | + | chr6.2:5539004-5539023 | None:intergenic | 15.0% |
| !!! | GGAAAAATAAAAGATTTTTT+TGG | - | chr6.2:5537822-5537841 | MS.gene030985:intron | 15.0% |
| !!! | TAAATTTTAGATATTCTACA+GGG | + | chr6.2:5541063-5541082 | None:intergenic | 15.0% |
| !!! | TATTTGTTATTTGAGTAATT+GGG | - | chr6.2:5537777-5537796 | MS.gene030985:intron | 15.0% |
| !!! | TGTATTATTGATTATTATAG+TGG | - | chr6.2:5537855-5537874 | MS.gene030985:intron | 15.0% |
| !!! | TTAAATTTTAGATATTCTAC+AGG | + | chr6.2:5541064-5541083 | None:intergenic | 15.0% |
| !!! | TTATTGTTATTTGAGTTATT+GGG | - | chr6.2:5538300-5538319 | MS.gene030985:intron | 15.0% |
| !!! | TTATTTGTTATTTGAGTAAT+TGG | - | chr6.2:5537776-5537795 | MS.gene030985:intron | 15.0% |
| !!! | TTTATTGTTATTTGAGTTAT+TGG | - | chr6.2:5538299-5538318 | MS.gene030985:intron | 15.0% |
| !!! | TTTTCTTTTAATTTGTTGTT+GGG | - | chr6.2:5538271-5538290 | MS.gene030985:intron | 15.0% |
| !!! | TTTTTCTTTTAATTTGTTGT+TGG | - | chr6.2:5538270-5538289 | MS.gene030985:intron | 15.0% |
| !! | AAAAAAAAACACTGATAAAC+AGG | + | chr6.2:5540773-5540792 | None:intergenic | 20.0% |
| !! | AAATGTAGAGATTAATGATT+TGG | - | chr6.2:5538403-5538422 | MS.gene030985:intron | 20.0% |
| !! | AACTGATTAAAATTTGTATG+GGG | - | chr6.2:5541174-5541193 | MS.gene030985:intron | 20.0% |
| !! | AGTTATAGTGCAATAAATAT+TGG | + | chr6.2:5539430-5539449 | None:intergenic | 20.0% |
| !! | CAAAATCACTTTATTCTAAT+CGG | + | chr6.2:5541108-5541127 | None:intergenic | 20.0% |
| !! | GAAACTGATTAAAATTTGTA+TGG | - | chr6.2:5541172-5541191 | MS.gene030985:intron | 20.0% |
| !! | GATAAAAAAAATCCAACAAT+TGG | + | chr6.2:5538156-5538175 | None:intergenic | 20.0% |
| !! | TAAGCTAAAAAATAAGTCAA+TGG | - | chr6.2:5538101-5538120 | MS.gene030985:intron | 20.0% |
| !! | TTGTTTATCAAATTAGTGAA+TGG | + | chr6.2:5539859-5539878 | None:intergenic | 20.0% |
| !!! | AAAATGAAATTCACTTTTGA+AGG | + | chr6.2:5541011-5541030 | None:intergenic | 20.0% |
| !!! | AAATAAAAGATTTTTTTGGG+TGG | - | chr6.2:5537826-5537845 | MS.gene030985:intron | 20.0% |
| !!! | AAATTTTAGATATTCTACAG+GGG | + | chr6.2:5541062-5541081 | None:intergenic | 20.0% |
| !!! | AATGATTTGGATTGAAATAT+GGG | - | chr6.2:5538416-5538435 | MS.gene030985:intron | 20.0% |
| !!! | AGAAATTTTGACTAATATTG+TGG | - | chr6.2:5537598-5537617 | MS.gene030985:CDS | 20.0% |
| !!! | TAAAAGTGAAGTTTTATTGA+AGG | + | chr6.2:5540797-5540816 | None:intergenic | 20.0% |
| !!! | TAATGATTTGGATTGAAATA+TGG | - | chr6.2:5538415-5538434 | MS.gene030985:intron | 20.0% |
| !!! | TTTCTTTTAATTTGTTGTTG+GGG | - | chr6.2:5538272-5538291 | MS.gene030985:intron | 20.0% |
| !!! | TTTTAGGATGATTGTTTTAT+TGG | - | chr6.2:5537801-5537820 | MS.gene030985:intron | 20.0% |
| ! | AAAAAATCCAACAATTGGAA+AGG | + | chr6.2:5538151-5538170 | None:intergenic | 25.0% |
| ! | AAAAATCCAACAATTGGAAA+GGG | + | chr6.2:5538150-5538169 | None:intergenic | 25.0% |
| ! | ATTGGAAGATTTGTAATTGT+AGG | - | chr6.2:5538342-5538361 | MS.gene030985:intron | 25.0% |
| ! | ATTTGTAGCCAGTTAATAAT+TGG | - | chr6.2:5539544-5539563 | MS.gene030985:intron | 25.0% |
| ! | CATCAATTAGTAAATGATGT+TGG | + | chr6.2:5539179-5539198 | None:intergenic | 25.0% |
| ! | CATCATTTACTAATTGATGA+TGG | - | chr6.2:5539180-5539199 | MS.gene030985:intron | 25.0% |
| ! | CTTGATTGTATTCAATTTGT+GGG | - | chr6.2:5538515-5538534 | MS.gene030985:intron | 25.0% |
| ! | TCAATAAAATTCTCTTGCTT+AGG | - | chr6.2:5541142-5541161 | MS.gene030985:intron | 25.0% |
| ! | TCGTACAATTACAAATGAAT+TGG | - | chr6.2:5540558-5540577 | MS.gene030985:intron | 25.0% |
| ! | TCTACTTACTTAAATAGCAT+TGG | + | chr6.2:5540396-5540415 | None:intergenic | 25.0% |
| ! | TTAAAATTTGTATGGGGATA+TGG | - | chr6.2:5541180-5541199 | MS.gene030985:intron | 25.0% |
| ! | TTACATTGCCAATTATTAAC+TGG | + | chr6.2:5539555-5539574 | None:intergenic | 25.0% |
| !! | ATTTGAGTAATTGGGTTTTT+AGG | - | chr6.2:5537785-5537804 | MS.gene030985:intron | 25.0% |
| !! | CCATTTTCTCAAATTAATTC+AGG | - | chr6.2:5538727-5538746 | MS.gene030985:intron | 25.0% |
| !! | CCTGAATTAATTTGAGAAAA+TGG | + | chr6.2:5538730-5538749 | None:intergenic | 25.0% |
| !!! | ATTGCACTATAACTGTTTTT+AGG | - | chr6.2:5539436-5539455 | MS.gene030985:intron | 25.0% |
| !!! | GGATTTTTTTTATCTGAGTT+GGG | - | chr6.2:5538162-5538181 | MS.gene030985:intron | 25.0% |
| !!! | TGGATTTTTTTTATCTGAGT+TGG | - | chr6.2:5538161-5538180 | MS.gene030985:intron | 25.0% |
| !!! | TTCATCATTTTTTACCTTGA+AGG | - | chr6.2:5540824-5540843 | MS.gene030985:intron | 25.0% |
| !!! | TTTTTTATTCACTGTTCTGT+TGG | - | chr6.2:5538942-5538961 | MS.gene030985:CDS | 25.0% |
| AAAAAACTCACAATTCCAGT+AGG | + | chr6.2:5537701-5537720 | None:intergenic | 30.0% | |
| AAAGTATGTCACTGCAAAAT+TGG | - | chr6.2:5539231-5539250 | MS.gene030985:CDS | 30.0% | |
| AAATCATTCTTCACCATTTC+TGG | - | chr6.2:5541433-5541452 | MS.gene030985:intron | 30.0% | |
| AACAAATTACCGTATGAAAC+AGG | - | chr6.2:5539874-5539893 | MS.gene030985:intron | 30.0% | |
| AAGATTTGTAGATGCATGAA+AGG | - | chr6.2:5538201-5538220 | MS.gene030985:intron | 30.0% | |
| AGAGAGACATACTATAAAGT+AGG | + | chr6.2:5539313-5539332 | None:intergenic | 30.0% | |
| ATAATTGGCAATGTAAAGCA+CGG | - | chr6.2:5539559-5539578 | MS.gene030985:intron | 30.0% | |
| GACATGATACTTTAGATTGA+AGG | - | chr6.2:5538628-5538647 | MS.gene030985:intron | 30.0% | |
| GAGAGACATACTATAAAGTA+GGG | + | chr6.2:5539312-5539331 | None:intergenic | 30.0% | |
| GCTTGATTGTATTCAATTTG+TGG | - | chr6.2:5538514-5538533 | MS.gene030985:intron | 30.0% | |
| GGTAACCTAATCAAAATTGA+GGG | + | chr6.2:5539112-5539131 | None:intergenic | 30.0% | |
| GTAAGTTCATGATTCTTTCT+CGG | - | chr6.2:5538903-5538922 | MS.gene030985:CDS | 30.0% | |
| TAGCTGTGTCTTTAGATATA+GGG | - | chr6.2:5540747-5540766 | MS.gene030985:intron | 30.0% | |
| TATTATAGTGGTAGCAATGT+CGG | - | chr6.2:5537867-5537886 | MS.gene030985:intron | 30.0% | |
| TATTCTAATCGGTAACAAAC+AGG | + | chr6.2:5541097-5541116 | None:intergenic | 30.0% | |
| TATTGCAGATCTTCTTTACA+AGG | - | chr6.2:5537634-5537653 | MS.gene030985:CDS | 30.0% | |
| TGGGTTATGATAGAACATTA+TGG | - | chr6.2:5538435-5538454 | MS.gene030985:intron | 30.0% | |
| TGTTAAACAACAACACATGT+TGG | - | chr6.2:5540455-5540474 | MS.gene030985:intron | 30.0% | |
| TTATGTTCATAAGCTTGTCA+AGG | - | chr6.2:5537975-5537994 | MS.gene030985:intron | 30.0% | |
| ! | AGTTGGGATGATTTTTGTAT+TGG | - | chr6.2:5538178-5538197 | MS.gene030985:intron | 30.0% |
| ! | GAAATGGTGAAGAATGATTT+TGG | + | chr6.2:5541433-5541452 | None:intergenic | 30.0% |
| ! | TCTATTTTACATCTGCCATA+TGG | + | chr6.2:5539141-5539160 | None:intergenic | 30.0% |
| !! | ATTTGTTATACAGTTGGGTT+GGG | - | chr6.2:5539080-5539099 | MS.gene030985:CDS | 30.0% |
| !! | CTTCATATTTTAAGCAGCTT+TGG | + | chr6.2:5540938-5540957 | None:intergenic | 30.0% |
| !! | TATTTGTTATACAGTTGGGT+TGG | - | chr6.2:5539079-5539098 | MS.gene030985:CDS | 30.0% |
| !! | TGCGTATTTGTTATACAGTT+GGG | - | chr6.2:5539075-5539094 | MS.gene030985:CDS | 30.0% |
| !! | TGTAGGCAAGATTTGTTATT+TGG | - | chr6.2:5538359-5538378 | MS.gene030985:intron | 30.0% |
| !! | TTGTTATTTGAGTTATTGGG+TGG | - | chr6.2:5538303-5538322 | MS.gene030985:intron | 30.0% |
| !!! | GTTTTCTGTTTAACTTGTCA+TGG | - | chr6.2:5538964-5538983 | MS.gene030985:CDS | 30.0% |
| !!! | TCATTTTTTACCTTGAAGGA+CGG | - | chr6.2:5540828-5540847 | MS.gene030985:intron | 30.0% |
| !!! | TGTTGTGATTTTTTGTGAAG+TGG | - | chr6.2:5538231-5538250 | MS.gene030985:intron | 30.0% |
| !!! | TTTTTTCCCTTTCCAATTGT+TGG | - | chr6.2:5538141-5538160 | MS.gene030985:intron | 30.0% |
| AAAGAAAACACACTCACACT+TGG | - | chr6.2:5541316-5541335 | MS.gene030985:CDS | 35.0% | |
| AAGCTTCGATTCAACAACTT+CGG | - | chr6.2:5541373-5541392 | MS.gene030985:intron | 35.0% | |
| ACAACATTGCTATCACTTAG+GGG | + | chr6.2:5538484-5538503 | None:intergenic | 35.0% | |
| ACTGCAAAATTGGAATGGAA+AGG | - | chr6.2:5539241-5539260 | MS.gene030985:CDS | 35.0% | |
| AGTGAGATTATAGGTCTGTT+TGG | - | chr6.2:5537900-5537919 | MS.gene030985:intron | 35.0% | |
| ATAAACACACCTAATCCCAT+AGG | - | chr6.2:5540909-5540928 | MS.gene030985:intron | 35.0% | |
| ATGTCACTGCAAAATTGGAA+TGG | - | chr6.2:5539236-5539255 | MS.gene030985:CDS | 35.0% | |
| CAAAAAAAGCTCACCTTTCT+TGG | + | chr6.2:5538814-5538833 | None:intergenic | 35.0% | |
| CACAACATTGCTATCACTTA+GGG | + | chr6.2:5538485-5538504 | None:intergenic | 35.0% | |
| CATAAACAGCCACAAAAAGA+GGG | + | chr6.2:5538769-5538788 | None:intergenic | 35.0% | |
| CTTTCTTATGACACCAAAAC+TGG | - | chr6.2:5540016-5540035 | MS.gene030985:intron | 35.0% | |
| GAATGTCACTACTGATATCA+AGG | - | chr6.2:5538863-5538882 | MS.gene030985:intron | 35.0% | |
| GATTATAGGTCTGTTTGGAT+CGG | - | chr6.2:5537905-5537924 | MS.gene030985:intron | 35.0% | |
| GGAAATAATGTAGTTGCTCT+CGG | - | chr6.2:5539986-5540005 | MS.gene030985:intron | 35.0% | |
| GGGTAACCTAATCAAAATTG+AGG | + | chr6.2:5539113-5539132 | None:intergenic | 35.0% | |
| GTAGCTGTGTCTTTAGATAT+AGG | - | chr6.2:5540746-5540765 | MS.gene030985:intron | 35.0% | |
| TACATGAGTCAATGTTGTGT+CGG | - | chr6.2:5540292-5540311 | MS.gene030985:intron | 35.0% | |
| TAGATTCTTTCAGTCTCCAA+TGG | - | chr6.2:5539827-5539846 | MS.gene030985:intron | 35.0% | |
| TCAAGACTATTCTTAGCTTC+AGG | - | chr6.2:5539749-5539768 | MS.gene030985:intron | 35.0% | |
| TCAATTTGTGGGTGTGTTTA+TGG | - | chr6.2:5538526-5538545 | MS.gene030985:intron | 35.0% | |
| TCCAATAACACCAGAAAAGT+TGG | + | chr6.2:5539969-5539988 | None:intergenic | 35.0% | |
| TGCAAGAATTGGAATAGCTT+TGG | - | chr6.2:5541486-5541505 | MS.gene030985:CDS | 35.0% | |
| TGTGGTGTAAGTGAGATTAT+AGG | - | chr6.2:5537891-5537910 | MS.gene030985:intron | 35.0% | |
| ! | AAGTGTGAGTGTGTTTTCTT+TGG | + | chr6.2:5541317-5541336 | None:intergenic | 35.0% |
| ! | ATGCTTGATTGATAGCAATG+TGG | - | chr6.2:5538580-5538599 | MS.gene030985:intron | 35.0% |
| ! | ATTTGAGTTATTGGGTGGTT+GGG | - | chr6.2:5538308-5538327 | MS.gene030985:intron | 35.0% |
| ! | GTGCGTTTAATCTGAAATGT+TGG | - | chr6.2:5540487-5540506 | MS.gene030985:intron | 35.0% |
| ! | TAGCATTTTGTGAACTTGAG+AGG | - | chr6.2:5540615-5540634 | MS.gene030985:intron | 35.0% |
| ! | TAGTAATGGGATTGACTACA+TGG | + | chr6.2:5541255-5541274 | None:intergenic | 35.0% |
| ! | TATTTGAGTTATTGGGTGGT+TGG | - | chr6.2:5538307-5538326 | MS.gene030985:intron | 35.0% |
| ! | TGAAGCTAAGAATAGTCTTG+AGG | + | chr6.2:5539750-5539769 | None:intergenic | 35.0% |
| !! | GTGCGTATTTGTTATACAGT+TGG | - | chr6.2:5539074-5539093 | MS.gene030985:CDS | 35.0% |
| !!! | CAAGAAAGGTGAGCTTTTTT+TGG | - | chr6.2:5538812-5538831 | MS.gene030985:intron | 35.0% |
| !!! | CCAACAGCTGTTTTAGTAAT+GGG | + | chr6.2:5541268-5541287 | None:intergenic | 35.0% |
| !!! | TCCAACAGCTGTTTTAGTAA+TGG | + | chr6.2:5541269-5541288 | None:intergenic | 35.0% |
| AAGTAGTGAGAGTGAACTTC+TGG | + | chr6.2:5537673-5537692 | None:intergenic | 40.0% | |
| AATAATGTAGTTGCTCTCGG+TGG | - | chr6.2:5539989-5540008 | MS.gene030985:intron | 40.0% | |
| ACACCAGAAAAGTTGGCAAT+TGG | + | chr6.2:5539962-5539981 | None:intergenic | 40.0% | |
| ACATGTAAATGCTAGTGTCG+TGG | + | chr6.2:5540368-5540387 | None:intergenic | 40.0% | |
| ACCTGAACTAAAGTCTGGAA+AGG | - | chr6.2:5539780-5539799 | MS.gene030985:intron | 40.0% | |
| AGATGCAAACAGTCGAGATA+AGG | - | chr6.2:5539467-5539486 | MS.gene030985:intron | 40.0% | |
| AGTACTTGCATGACTATGCT+GGG | - | chr6.2:5539906-5539925 | MS.gene030985:intron | 40.0% | |
| ATGCAAACAGTCGAGATAAG+GGG | - | chr6.2:5539469-5539488 | MS.gene030985:intron | 40.0% | |
| ATGCCTCATCTAACTAGGTA+AGG | + | chr6.2:5540711-5540730 | None:intergenic | 40.0% | |
| CAACCTTACCTAGTTAGATG+AGG | - | chr6.2:5540705-5540724 | MS.gene030985:intron | 40.0% | |
| CACCAGAAAAGTTGGCAATT+GGG | + | chr6.2:5539961-5539980 | None:intergenic | 40.0% | |
| CAGTTCATCACAAAACCAAC+TGG | + | chr6.2:5538557-5538576 | None:intergenic | 40.0% | |
| CCCATTACTAAAACAGCTGT+TGG | - | chr6.2:5541265-5541284 | MS.gene030985:intron | 40.0% | |
| CCTAATCAAAATTGAGGGAG+TGG | + | chr6.2:5539107-5539126 | None:intergenic | 40.0% | |
| CTCACTACTTATTCACCTAC+TGG | - | chr6.2:5537683-5537702 | MS.gene030985:CDS | 40.0% | |
| CTGTAATGCCTCATCTAACT+AGG | + | chr6.2:5540716-5540735 | None:intergenic | 40.0% | |
| GAACTTCAGCCTGTTTCATA+CGG | + | chr6.2:5539886-5539905 | None:intergenic | 40.0% | |
| GATCGACAGATATTGATGTG+TGG | + | chr6.2:5539599-5539618 | None:intergenic | 40.0% | |
| GATGCAAACAGTCGAGATAA+GGG | - | chr6.2:5539468-5539487 | MS.gene030985:intron | 40.0% | |
| GCACAACATTGCTATCACTT+AGG | + | chr6.2:5538486-5538505 | None:intergenic | 40.0% | |
| GCATAAACAGCCACAAAAAG+AGG | + | chr6.2:5538770-5538789 | None:intergenic | 40.0% | |
| GTGTTCACAAGACTTAATGC+TGG | - | chr6.2:5540040-5540059 | MS.gene030985:intron | 40.0% | |
| GTGTTTATGGTTTGACCAGT+TGG | - | chr6.2:5538539-5538558 | MS.gene030985:intron | 40.0% | |
| TACACGAGTCAATGTTGTGT+CGG | - | chr6.2:5540432-5540451 | MS.gene030985:intron | 40.0% | |
| TAGTGAATGGTGCTTTCCAT+TGG | + | chr6.2:5539846-5539865 | None:intergenic | 40.0% | |
| TGTCACTACTGATATCAAGG+TGG | - | chr6.2:5538866-5538885 | MS.gene030985:intron | 40.0% | |
| TTCATGATTCTTTCTCGGCT+GGG | - | chr6.2:5538908-5538927 | MS.gene030985:CDS | 40.0% | |
| ! | AAATTGGAATGGAAAGGCGT+TGG | - | chr6.2:5539247-5539266 | MS.gene030985:CDS | 40.0% |
| ! | AACCCAATTGCCAACTTTTC+TGG | - | chr6.2:5539956-5539975 | MS.gene030985:intron | 40.0% |
| ! | AATTCAGGCTTTGACTCCTT+TGG | - | chr6.2:5538742-5538761 | MS.gene030985:intron | 40.0% |
| ! | ACCTTTCCAGACTTTAGTTC+AGG | + | chr6.2:5539784-5539803 | None:intergenic | 40.0% |
| ! | ATGGTAGTACGAAGCATTCA+GGG | + | chr6.2:5541236-5541255 | None:intergenic | 40.0% |
| ! | CTTTAGATTGAAGGTGTGTC+TGG | - | chr6.2:5538637-5538656 | MS.gene030985:intron | 40.0% |
| ! | CTTTTTGTGGCTGTTTATGC+AGG | - | chr6.2:5538770-5538789 | MS.gene030985:intron | 40.0% |
| !! | ATTCTTCACCATTTCTGGTG+AGG | - | chr6.2:5541438-5541457 | MS.gene030985:intron | 40.0% |
| !!! | CCACTCCCTCAATTTTGATT+AGG | - | chr6.2:5539104-5539123 | MS.gene030985:intron | 40.0% |
| !!! | GCCAACTTTTCTGGTGTTAT+TGG | - | chr6.2:5539965-5539984 | MS.gene030985:intron | 40.0% |
| ACACAAGGTAGCACACAACA+TGG | + | chr6.2:5539514-5539533 | None:intergenic | 45.0% | |
| ACTGCCTCAAGTACCAAGAA+AGG | - | chr6.2:5538798-5538817 | MS.gene030985:intron | 45.0% | |
| CAGTACTTGCATGACTATGC+TGG | - | chr6.2:5539905-5539924 | MS.gene030985:intron | 45.0% | |
| CCTGAACCTGAACTAAAGTC+TGG | - | chr6.2:5539775-5539794 | MS.gene030985:intron | 45.0% | |
| CTCACCTTTCTTGGTACTTG+AGG | + | chr6.2:5538805-5538824 | None:intergenic | 45.0% | |
| CTTTGGACACCTATGGGATT+AGG | + | chr6.2:5540921-5540940 | None:intergenic | 45.0% | |
| GCTTTACTACCGTTGCAAAG+CGG | - | chr6.2:5539028-5539047 | MS.gene030985:CDS | 45.0% | |
| GGGATATGGTAAATGCATGC+AGG | - | chr6.2:5541194-5541213 | MS.gene030985:intron | 45.0% | |
| GGTTGGGATGATTGGTGTAT+TGG | - | chr6.2:5538324-5538343 | MS.gene030985:intron | 45.0% | |
| GTGATAGCAATGTTGTGCTG+TGG | - | chr6.2:5538488-5538507 | MS.gene030985:intron | 45.0% | |
| GTTCATGATTCTTTCTCGGC+TGG | - | chr6.2:5538907-5538926 | MS.gene030985:CDS | 45.0% | |
| TAAAACAGCTGTTGGAGCTG+AGG | - | chr6.2:5541273-5541292 | MS.gene030985:intron | 45.0% | |
| TACATCTGCCATATGGAGCA+CGG | + | chr6.2:5539134-5539153 | None:intergenic | 45.0% | |
| TAGTGTCGTGATCAGTGTCA+GGG | + | chr6.2:5540216-5540235 | None:intergenic | 45.0% | |
| TATTGGGTGGTTGGGATGAT+TGG | - | chr6.2:5538316-5538335 | MS.gene030985:intron | 45.0% | |
| TCGAGATAAGGGGCAACTTT+AGG | - | chr6.2:5539479-5539498 | MS.gene030985:intron | 45.0% | |
| TCGATTCAACAACTTCGGAC+TGG | - | chr6.2:5541378-5541397 | MS.gene030985:intron | 45.0% | |
| TGTCGGACAACAACACATGT+TGG | - | chr6.2:5540315-5540334 | MS.gene030985:intron | 45.0% | |
| TTAGTGTCGTGATCAGTGTC+AGG | + | chr6.2:5540217-5540236 | None:intergenic | 45.0% | |
| TTGTCAGAATCCGTCCTTCA+AGG | + | chr6.2:5540841-5540860 | None:intergenic | 45.0% | |
| ! | AGTCAATGTTGTGTCGGTGT+CGG | - | chr6.2:5540298-5540317 | MS.gene030985:intron | 45.0% |
| ! | CATGGTAGTACGAAGCATTC+AGG | + | chr6.2:5541237-5541256 | None:intergenic | 45.0% |
| ! | CCAGACTTTAGTTCAGGTTC+AGG | + | chr6.2:5539778-5539797 | None:intergenic | 45.0% |
| ! | CTAAGAATAGTCTTGAGGCC+AGG | + | chr6.2:5539745-5539764 | None:intergenic | 45.0% |
| ! | TAGATTGAAGGTGTGTCTGG+TGG | - | chr6.2:5538640-5538659 | MS.gene030985:intron | 45.0% |
| ! | TCCTTTGGACCCTCTTTTTG+TGG | - | chr6.2:5538757-5538776 | MS.gene030985:intron | 45.0% |
| ! | TCTGAAATGTTGGTGCGTTG+TGG | - | chr6.2:5540497-5540516 | MS.gene030985:intron | 45.0% |
| ! | TCTTGTGAACACGCCAGTTT+TGG | + | chr6.2:5540032-5540051 | None:intergenic | 45.0% |
| !! | AAGCAGCTTTGGACACCTAT+GGG | + | chr6.2:5540927-5540946 | None:intergenic | 45.0% |
| !! | TAAGCAGCTTTGGACACCTA+TGG | + | chr6.2:5540928-5540947 | None:intergenic | 45.0% |
| ACATCTGCCATATGGAGCAC+GGG | + | chr6.2:5539133-5539152 | None:intergenic | 50.0% | |
| ACTGTTAATGAGCCAGCTCC+TGG | - | chr6.2:5539724-5539743 | MS.gene030985:intron | 50.0% | |
| CCAGGTCTCTACTCTGACAT+CGG | - | chr6.2:5537489-5537508 | MS.gene030985:CDS | 50.0% | |
| CGGAGAGAGAGTGAGAAAGA+GGG | + | chr6.2:5537532-5537551 | None:intergenic | 50.0% | |
| GACATCGGCAAAAAAGCCAG+AGG | - | chr6.2:5537504-5537523 | MS.gene030985:CDS | 50.0% | |
| GCCACAAAAAGAGGGTCCAA+AGG | + | chr6.2:5538761-5538780 | None:intergenic | 50.0% | |
| TAGGTTACCCGTGCTCCATA+TGG | - | chr6.2:5539123-5539142 | MS.gene030985:intron | 50.0% | |
| TAGTGTCGTGGTCAGTGTCA+TGG | + | chr6.2:5540356-5540375 | None:intergenic | 50.0% | |
| TCACTTAGGGGTCAGCTACA+TGG | + | chr6.2:5538472-5538491 | None:intergenic | 50.0% | |
| TCGGAGAGAGAGTGAGAAAG+AGG | + | chr6.2:5537533-5537552 | None:intergenic | 50.0% | |
| TTGGTGCGTTGTGGTAGCTT+TGG | - | chr6.2:5540506-5540525 | MS.gene030985:intron | 50.0% | |
| ! | ACCGTTGCAAAGCGGCTTTT+TGG | - | chr6.2:5539036-5539055 | MS.gene030985:CDS | 50.0% |
| ! | AGTGGTAGCAATGTCGGTTG+TGG | - | chr6.2:5537873-5537892 | MS.gene030985:intron | 50.0% |
| ! | GCCAAAAAGCCGCTTTGCAA+CGG | + | chr6.2:5539040-5539059 | None:intergenic | 50.0% |
| !! | AACAACTTCGGACTGGCAAG+CGG | - | chr6.2:5541385-5541404 | MS.gene030985:intron | 50.0% |
| !! | AGTGAGAAAGAGGGTACCTC+TGG | + | chr6.2:5537523-5537542 | None:intergenic | 50.0% |
| !! | CTTCACCATTTCTGGTGAGG+TGG | - | chr6.2:5541441-5541460 | MS.gene030985:intron | 50.0% |
| !! | GTTTGCTGTCAACCCAATGC+TGG | + | chr6.2:5539939-5539958 | None:intergenic | 50.0% |
| CCGATGTCAGAGTAGAGACC+TGG | + | chr6.2:5537492-5537511 | None:intergenic | 55.0% | |
| CTGGGATTTCCGCCAGCATT+GGG | - | chr6.2:5539924-5539943 | MS.gene030985:intron | 55.0% | |
| GGTGTCCACCTCACCAGAAA+TGG | + | chr6.2:5541449-5541468 | None:intergenic | 55.0% | |
| TGCTGTCAACCCAATGCTGG+CGG | + | chr6.2:5539936-5539955 | None:intergenic | 55.0% | |
| TTCTGGTGAGGTGGACACCA+AGG | - | chr6.2:5541450-5541469 | MS.gene030985:intron | 55.0% | |
| ! | ATAGTCTTGAGGCCAGGAGC+TGG | + | chr6.2:5539739-5539758 | None:intergenic | 55.0% |
| ! | ATTTTGGACGCCACTCGTGC+TGG | + | chr6.2:5541417-5541436 | None:intergenic | 55.0% |
| GCTGGGATTTCCGCCAGCAT+TGG | - | chr6.2:5539923-5539942 | MS.gene030985:intron | 60.0% | |
| GCGGTCTCATCCAGCACGAG+TGG | - | chr6.2:5541404-5541423 | MS.gene030985:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 5537477 | 5541522 | 5537477 | ID=MS.gene030985 |
| chr6.2 | mRNA | 5537477 | 5541522 | 5537477 | ID=MS.gene030985.t1;Parent=MS.gene030985 |
| chr6.2 | exon | 5541474 | 5541522 | 5541474 | ID=MS.gene030985.t1.exon1;Parent=MS.gene030985.t1 |
| chr6.2 | CDS | 5541474 | 5541522 | 5541474 | ID=cds.MS.gene030985.t1;Parent=MS.gene030985.t1 |
| chr6.2 | exon | 5541290 | 5541357 | 5541290 | ID=MS.gene030985.t1.exon2;Parent=MS.gene030985.t1 |
| chr6.2 | CDS | 5541290 | 5541357 | 5541290 | ID=cds.MS.gene030985.t1;Parent=MS.gene030985.t1 |
| chr6.2 | exon | 5540097 | 5540207 | 5540097 | ID=MS.gene030985.t1.exon3;Parent=MS.gene030985.t1 |
| chr6.2 | CDS | 5540097 | 5540207 | 5540097 | ID=cds.MS.gene030985.t1;Parent=MS.gene030985.t1 |
| chr6.2 | exon | 5539198 | 5539290 | 5539198 | ID=MS.gene030985.t1.exon4;Parent=MS.gene030985.t1 |
| chr6.2 | CDS | 5539198 | 5539290 | 5539198 | ID=cds.MS.gene030985.t1;Parent=MS.gene030985.t1 |
| chr6.2 | exon | 5538895 | 5539103 | 5538895 | ID=MS.gene030985.t1.exon5;Parent=MS.gene030985.t1 |
| chr6.2 | CDS | 5538895 | 5539103 | 5538895 | ID=cds.MS.gene030985.t1;Parent=MS.gene030985.t1 |
| chr6.2 | exon | 5537477 | 5537783 | 5537477 | ID=MS.gene030985.t1.exon6;Parent=MS.gene030985.t1 |
| chr6.2 | CDS | 5537477 | 5537783 | 5537477 | ID=cds.MS.gene030985.t1;Parent=MS.gene030985.t1 |
| Gene Sequence |
| Protein sequence |
