AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene43603

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43603.t1 MTR_2g018290 97.570 535 10 3 1 534 1 533 0.0 1062
MS.gene43603.t1 MTR_7g108420 73.770 427 89 3 113 534 1 409 0.0 626
MS.gene43603.t1 MTR_5g030950 57.700 487 190 3 62 533 23 508 0.0 578
MS.gene43603.t1 MTR_5g067060 58.991 456 174 3 88 533 45 497 0.0 568
MS.gene43603.t1 MTR_3g084310 59.389 458 166 6 88 533 12 461 0.0 548
MS.gene43603.t1 MTR_8g081510 57.642 458 174 5 88 533 12 461 0.0 540
MS.gene43603.t1 MTR_2g006570 52.034 467 203 5 82 533 130 590 1.72e-168 490
MS.gene43603.t1 MTR_3g084310 63.533 351 114 3 88 426 12 360 5.28e-161 462
MS.gene43603.t1 MTR_3g073470 48.081 495 224 7 60 533 92 574 9.41e-160 467
MS.gene43603.t1 MTR_2g006570 51.294 425 186 5 124 533 1 419 3.61e-151 439
MS.gene43603.t1 MTR_1g073580 48.814 295 82 7 232 526 1 226 1.49e-70 226
MS.gene43603.t1 MTR_3g062030 88.043 92 7 1 328 419 1 88 1.98e-47 165
MS.gene43603.t1 MTR_7g070020 86.301 73 3 1 402 467 1 73 4.81e-32 119
MS.gene43603.t1 MTR_1g070415 64.045 89 32 0 438 526 23 111 2.07e-31 118
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43603.t1 AT4G32520 73.889 540 119 6 4 534 3 529 0.0 804
MS.gene43603.t1 AT4G32520 73.889 540 119 6 4 534 3 529 0.0 804
MS.gene43603.t1 AT4G37930 59.477 459 175 3 84 533 51 507 0.0 579
MS.gene43603.t1 AT5G26780 59.825 458 175 2 84 533 51 507 0.0 576
MS.gene43603.t1 AT5G26780 59.825 458 175 2 84 533 51 507 0.0 576
MS.gene43603.t1 AT5G26780 57.806 474 175 3 84 533 51 523 0.0 565
MS.gene43603.t1 AT5G26780 57.806 474 175 3 84 533 51 523 0.0 565
MS.gene43603.t1 AT4G13930 57.849 465 176 5 81 533 5 461 0.0 544
MS.gene43603.t1 AT4G13890 54.741 464 190 6 80 533 8 461 0.0 525
MS.gene43603.t1 AT4G13890 59.794 388 142 4 80 457 8 391 2.42e-170 487
MS.gene43603.t1 AT1G22020 51.844 461 201 3 88 533 142 596 1.07e-168 491
MS.gene43603.t1 AT1G22020 51.844 461 201 3 88 533 142 596 1.07e-168 491
MS.gene43603.t1 AT1G36370 48.406 502 234 5 47 533 101 592 2.66e-161 472

Find 130 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTTACATGTAAGGTATTA+TGG 0.211657 2.2:+66323105 MS.gene43603:intron
TCTCTTCATGAAGCAACTTT+TGG 0.244672 2.2:+66321849 MS.gene43603:CDS
TGTTCCTGAGACCAAACTTT+TGG 0.281834 2.2:-66326177 None:intergenic
TAAACCACATGATCGTATTA+TGG 0.291091 2.2:+66323272 MS.gene43603:CDS
CGGAAGGTTTGCCGGGTAAA+AGG 0.292672 2.2:+66322991 MS.gene43603:CDS
GACATTACTATACCTGGTTT+TGG 0.309475 2.2:-66324437 None:intergenic
GGATCTAGCTTCTTGGACTA+TGG 0.313167 2.2:+66322822 MS.gene43603:CDS
TCATGAATCCATGAGATAAA+TGG 0.317863 2.2:-66323404 None:intergenic
CATGGATATAAACTGGTTTC+TGG 0.318988 2.2:+66324576 MS.gene43603:CDS
AGTCCTCTTGTTGTCATTGC+TGG 0.320405 2.2:-66326089 None:intergenic
TGAAATGAAGTTGAGGTAAA+AGG 0.321492 2.2:-66321791 None:intergenic
GTAAATGTTCAACCATTATC+TGG 0.330824 2.2:+66323213 MS.gene43603:CDS
GTTAGCTCCTGAATTTCCTT+TGG 0.331098 2.2:+66326226 MS.gene43603:CDS
GACAAGAGTGCCCTGGTTCC+CGG 0.331923 2.2:+66326047 MS.gene43603:CDS
TTGTCTCCCAAAGGAAATTC+AGG 0.356751 2.2:-66326233 None:intergenic
TTAGCTCCTGAATTTCCTTT+GGG 0.358906 2.2:+66326227 MS.gene43603:CDS
GCTTGAAATGATTACTGTTA+TGG 0.362788 2.2:-66321815 None:intergenic
CATGTCCTTTAGGGTATTGA+TGG 0.367422 2.2:+66325639 MS.gene43603:intron
CAGGTACTCGGAAGGTTTGC+CGG 0.379231 2.2:+66322983 MS.gene43603:CDS
GCTACTCAGTATCCTATTCC+TGG 0.382497 2.2:+66326290 MS.gene43603:CDS
CGACCAAAACTCATTATTGC+TGG 0.387419 2.2:+66323644 MS.gene43603:CDS
TTGGCTGCATTTCATCTAGA+TGG 0.389212 2.2:+66323177 MS.gene43603:CDS
AGTTGAGCATGGATATAAAC+TGG 0.395755 2.2:+66324569 MS.gene43603:CDS
GCACCAGCAATAATGAGTTT+TGG 0.396589 2.2:-66323647 None:intergenic
TTCATGAAGAGATACTTTGC+AGG 0.398932 2.2:-66321838 None:intergenic
TTAATTATGGCATGAACATC+AGG 0.399990 2.2:-66322861 None:intergenic
CAGGGTTTGGATTTGCCTCA+TGG 0.402969 2.2:+66323378 MS.gene43603:intron
AAGTCTTGAAGCCAAAAGTT+TGG 0.403698 2.2:+66326166 MS.gene43603:CDS
ACAGCTAAAAGACGTGTATC+AGG 0.403874 2.2:+66323426 MS.gene43603:CDS
AGTAGGTGCGTTTCTGATGA+TGG 0.415251 2.2:+66323839 MS.gene43603:CDS
TGCGGATGCCTCCGGGAACC+AGG 0.419322 2.2:-66326058 None:intergenic
TGAACCGATGCGGATGCCTC+CGG 0.423228 2.2:-66326066 None:intergenic
TATATCCATGCTCAACTAAC+CGG 0.429922 2.2:-66324563 None:intergenic
GAGGATTAGACTCCAGGAAT+AGG 0.435050 2.2:-66326302 None:intergenic
CCTCCAATTGTGTGGTTATG+AGG 0.442574 2.2:-66324366 None:intergenic
AAGCTTCATAATTTCTCTCA+TGG 0.442791 2.2:+66321765 MS.gene43603:CDS
TGCTGTGCATGGAGTTGATC+TGG 0.443884 2.2:+66324154 MS.gene43603:CDS
TTGGTTCATGCCTCACAAAC+AGG 0.446380 2.2:+66322964 MS.gene43603:CDS
GTTCAAGACTTCTGAATTGA+CGG 0.454529 2.2:-66322896 None:intergenic
TGCCATAATTAACAAGGAAA+AGG 0.471108 2.2:+66322872 MS.gene43603:CDS
GAAGCCAAAAGTTTGGTCTC+AGG 0.473679 2.2:+66326173 MS.gene43603:CDS
AGGTGATGGATCTAGCTTCT+TGG 0.473982 2.2:+66322815 MS.gene43603:intron
ACTGCAGAGCTCTTGCTAAC+CGG 0.474741 2.2:+66324544 MS.gene43603:CDS
TTAGCCGGGGAACCAGATAA+TGG 0.480349 2.2:-66323225 None:intergenic
ATGCAGCCAATGCCCTTTGT+TGG 0.480401 2.2:-66323164 None:intergenic
AGGTACTGAATTCTTGTTGA+GGG 0.482851 2.2:-66325700 None:intergenic
GGTCCTCATAACCACACAAT+TGG 0.484263 2.2:+66324363 MS.gene43603:CDS
AAGGCAAACCTTGTGGGTTG+TGG 0.484488 2.2:-66323937 None:intergenic
ATGGATATGGCTCACGTAAG+TGG 0.485774 2.2:+66323858 MS.gene43603:CDS
GTGTATACTGCAAAATTAGC+CGG 0.486513 2.2:-66323240 None:intergenic
GAGACAAGGTTTCAAATTTG+CGG 0.487306 2.2:+66326249 MS.gene43603:CDS
CACAATATCAACAAACTCAA+AGG 0.487808 2.2:-66323910 None:intergenic
AGGGAGAGAAGAAGGAGAAG+AGG 0.491682 2.2:-66321892 None:intergenic
TGTTATTGATTATGATATGT+TGG 0.493518 2.2:+66323601 MS.gene43603:CDS
TATCTCAAGGCAAACCTTGT+GGG 0.496905 2.2:-66323943 None:intergenic
AGGTACTCGGAAGGTTTGCC+GGG 0.499896 2.2:+66322984 MS.gene43603:CDS
CATGGAGGCCATTTATCTCA+TGG 0.503373 2.2:+66323396 MS.gene43603:CDS
TGCGTTTCTGATGATGGATA+TGG 0.504349 2.2:+66323845 MS.gene43603:CDS
AGTGGAGTTGCATCAATGAT+AGG 0.508144 2.2:+66321711 MS.gene43603:CDS
ACGATGCCTGCGGCGTGTAG+TGG 0.514693 2.2:+66321693 None:intergenic
TGTATGGAGGATTAGACTCC+AGG 0.515240 2.2:-66326308 None:intergenic
GAACCGATGCGGATGCCTCC+GGG 0.516515 2.2:-66326065 None:intergenic
TGTATACTGCAAAATTAGCC+GGG 0.520542 2.2:-66323239 None:intergenic
TGAATTTCCTTTGGGAGACA+AGG 0.521416 2.2:+66326235 MS.gene43603:CDS
GTGGATTCATCAAGTCGATA+AGG 0.522073 2.2:-66323474 None:intergenic
CCAATGCCCTTTGTTGGCAT+AGG 0.522830 2.2:-66323158 None:intergenic
CCTCATAACCACACAATTGG+AGG 0.524293 2.2:+66324366 MS.gene43603:CDS
ACAATATCAACAAACTCAAA+GGG 0.525909 2.2:-66323909 None:intergenic
CGAAATCCTATGCCAACAAA+GGG 0.528808 2.2:+66323152 MS.gene43603:CDS
GACTTCCTCCAGTCTTTGAG+AGG 0.535766 2.2:+66324098 MS.gene43603:intron
TCCAAATTTACCTGTAGACC+AGG 0.536472 2.2:-66324203 None:intergenic
TCAACCATTATCTGGTTCCC+CGG 0.537768 2.2:+66323221 MS.gene43603:CDS
ACCTGGTTCTTGTTGATCTG+AGG 0.546425 2.2:+66324613 MS.gene43603:CDS
TGGATATGGCTCACGTAAGT+GGG 0.546881 2.2:+66323859 MS.gene43603:CDS
TCATGAAGAGATACTTTGCA+GGG 0.549031 2.2:-66321837 None:intergenic
TCGAAATCCTATGCCAACAA+AGG 0.549476 2.2:+66323151 MS.gene43603:CDS
AAGAATATCATACCACCTCT+AGG 0.550750 2.2:-66324122 None:intergenic
TAACCACACAATTGGAGGAC+TGG 0.556258 2.2:+66324371 MS.gene43603:CDS
ATCATGTGGTTTAAGAATTG+CGG 0.559264 2.2:-66323262 None:intergenic
TTCATCAAGTCGATAAGGCA+TGG 0.561368 2.2:-66323469 None:intergenic
GCGGATGCCTCCGGGAACCA+GGG 0.563617 2.2:-66326057 None:intergenic
TTCAAGAAAGATGCTGTGCA+TGG 0.563986 2.2:+66324143 MS.gene43603:CDS
TGGTGGTAGTGATAATCACC+TGG 0.565448 2.2:+66324596 MS.gene43603:CDS
GCAACTCCACTACACGCCGC+AGG 0.573421 2.2:-66321699 None:intergenic
CCTATGCCAACAAAGGGCAT+TGG 0.576114 2.2:+66323158 MS.gene43603:CDS
AATTGCAGACTTAATTCATG+AGG 0.576911 2.2:+66326133 MS.gene43603:CDS
GCAATGACAACAAGAGGACT+TGG 0.577675 2.2:+66326092 MS.gene43603:CDS
GTTCCCGGAGGCATCCGCAT+CGG 0.582687 2.2:+66326062 MS.gene43603:CDS
ATGCCTCACAAACAGGTACT+CGG 0.582902 2.2:+66322971 MS.gene43603:CDS
TCATCTAGATGGTAACAAGT+GGG 0.583625 2.2:+66323188 MS.gene43603:CDS
TGAAAGATTGCAGATTCAGT+AGG 0.585640 2.2:+66323822 MS.gene43603:intron
CTCAACAAGAATTCAGTACC+TGG 0.587997 2.2:+66325702 MS.gene43603:CDS
GCTAACCGGTTAGTTGAGCA+TGG 0.590724 2.2:+66324558 MS.gene43603:CDS
TTTGAAACCTTGTCTCCCAA+AGG 0.595328 2.2:-66326242 None:intergenic
GCAAACCTTGTGGGTTGTGG+TGG 0.598562 2.2:-66323934 None:intergenic
AAGTTTGGTCTCAGGAACAA+AGG 0.601314 2.2:+66326181 MS.gene43603:CDS
TGAAGCTTAGTCGAAGAAAG+AGG 0.601979 2.2:-66321750 None:intergenic
GGGTATTGATGGTGCTCGTG+TGG 0.604786 2.2:+66325650 MS.gene43603:intron
TATCGACTTGATGAATCCAC+AGG 0.605117 2.2:+66323477 MS.gene43603:CDS
ATTGCAGACTTAATTCATGA+GGG 0.605844 2.2:+66326134 MS.gene43603:CDS
TCACCAGCAATGACAACAAG+AGG 0.607582 2.2:+66326086 MS.gene43603:CDS
CTTCCGAGTACCTGTTTGTG+AGG 0.608482 2.2:-66322974 None:intergenic
TTCATCTAGATGGTAACAAG+TGG 0.609676 2.2:+66323187 MS.gene43603:CDS
GCCTCAGATCAACAAGAACC+AGG 0.611769 2.2:-66324614 None:intergenic
TTTACCATAATACGATCATG+TGG 0.612403 2.2:-66323276 None:intergenic
TGTGGAGAAAATTCTTGACA+TGG 0.613472 2.2:+66325668 MS.gene43603:CDS
AAAAGGTGACAAGAGTGCCC+TGG 0.613809 2.2:+66326040 MS.gene43603:intron
TGTTCATGCCATAATTAACA+AGG 0.614939 2.2:+66322866 MS.gene43603:CDS
CAGTCTTTGAGAGGTCCTAG+AGG 0.623014 2.2:+66324107 MS.gene43603:intron
GGTTTGGATTTGCCTCATGG+AGG 0.630913 2.2:+66323381 MS.gene43603:CDS
ACAAGGTTTCAAATTTGCGG+AGG 0.637013 2.2:+66326252 MS.gene43603:CDS
AAGGCAGTGATGGAAGCAGT+TGG 0.639750 2.2:+66322945 MS.gene43603:CDS
CAGGTACTGAATTCTTGTTG+AGG 0.639938 2.2:-66325701 None:intergenic
CGGGAATAATCAATGTCTCG+AGG 0.641231 2.2:-66323680 None:intergenic
AATGTCTCGAGGATAAGCAC+TGG 0.642731 2.2:-66323669 None:intergenic
CTTCATAATTTCTCTCATGG+AGG 0.646645 2.2:+66321768 MS.gene43603:CDS
CATCTAGATGGTAACAAGTG+GGG 0.651752 2.2:+66323189 MS.gene43603:CDS
GGATATAAACTGGTTTCTGG+TGG 0.652464 2.2:+66324579 MS.gene43603:CDS
CTGCCAGTCCTCCAATTGTG+TGG 0.658073 2.2:-66324374 None:intergenic
TGTGACCACCACAACCCACA+AGG 0.658566 2.2:+66323929 MS.gene43603:CDS
TTACATGTAAGGTATTATGG+TGG 0.660596 2.2:+66323108 MS.gene43603:intron
TTATGGTTGAAATGAAGTTG+AGG 0.663071 2.2:-66321798 None:intergenic
CTCACAAACAGGTACTCGGA+AGG 0.671763 2.2:+66322975 MS.gene43603:CDS
TCTTTGAGAGGTCCTAGAGG+TGG 0.677857 2.2:+66324110 MS.gene43603:CDS
CTAATCCATAACGATGCCTG+CGG 0.695014 2.2:+66321683 None:intergenic
GTATACTGCAAAATTAGCCG+GGG 0.698001 2.2:-66323238 None:intergenic
AAGAGTGCCCTGGTTCCCGG+AGG 0.704318 2.2:+66326050 MS.gene43603:CDS
AGCTTAGTCGAAGAAAGAGG+TGG 0.704887 2.2:-66321747 None:intergenic
TGAGATAAATGGCCTCCATG+AGG 0.708702 2.2:-66323393 None:intergenic
TCATTGCTGGTGAACCGATG+CGG 0.745962 2.2:-66326076 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATAATGCAAATATT+AGG + chr2.2:66325025-66325044 MS.gene43603:intron 10.0%
!! AAAAAATAATGCAAATATTA+GGG + chr2.2:66325026-66325045 MS.gene43603:intron 10.0%
!! ATGCATATATATTTAAATTT+CGG - chr2.2:66322747-66322766 None:intergenic 10.0%
!!! ATATTTGCATTATTTTTTTT+AGG - chr2.2:66325024-66325043 None:intergenic 10.0%
!! AAAAACAACTTATAACTTAT+CGG - chr2.2:66322311-66322330 None:intergenic 15.0%
!! AATAGAATCAAAAAATGAAA+TGG - chr2.2:66321951-66321970 None:intergenic 15.0%
!! ACATGTATAATAAATATAGA+TGG - chr2.2:66322111-66322130 None:intergenic 15.0%
!!! AAATTTTAGAAAAGATTTAG+AGG - chr2.2:66325498-66325517 None:intergenic 15.0%
!!! AAGTCACTTTTTTTTATAAT+TGG + chr2.2:66322403-66322422 MS.gene43603:intron 15.0%
!!! ATTATTATTTCTATGTTGTT+AGG - chr2.2:66324922-66324941 None:intergenic 15.0%
!!! TAATTCATTTTAGTATATGA+TGG - chr2.2:66325363-66325382 None:intergenic 15.0%
!!! TTATTATTTCTATGTTGTTA+GGG - chr2.2:66324921-66324940 None:intergenic 15.0%
!!! TTTTGGTAATTTTTAAAATC+TGG - chr2.2:66324423-66324442 None:intergenic 15.0%
!! ACTAATTTCGATAAATTCTT+CGG - chr2.2:66322447-66322466 None:intergenic 20.0%
!! ATAATACCTTACATGTAAAT+GGG - chr2.2:66323106-66323125 None:intergenic 20.0%
!! ATATAATGATAATTCTGTCT+TGG + chr2.2:66324669-66324688 MS.gene43603:intron 20.0%
!! CTATATTAAAATCACAAACT+AGG - chr2.2:66324325-66324344 None:intergenic 20.0%
!! GTTAAAAAAGAACTAATTAG+AGG - chr2.2:66324233-66324252 None:intergenic 20.0%
!! TAAAATCGTTTCAGATATAT+TGG + chr2.2:66323517-66323536 MS.gene43603:intron 20.0%
!! TTTAAATATATATGCATGCT+TGG + chr2.2:66322750-66322769 MS.gene43603:intron 20.0%
!!! AATATAGTGAAGAATTTTTC+AGG + chr2.2:66324338-66324357 MS.gene43603:intron 20.0%
!!! AGTTGTTTTTATTTATAAGC+TGG + chr2.2:66322321-66322340 MS.gene43603:intron 20.0%
!!! ATATAGTGAAGAATTTTTCA+GGG + chr2.2:66324339-66324358 MS.gene43603:intron 20.0%
!!! ATTAAGTTGTTTATGAAAAC+AGG - chr2.2:66322193-66322212 None:intergenic 20.0%
!!! ATTTTTACTTCTCTAGAAAT+GGG + chr2.2:66323027-66323046 MS.gene43603:intron 20.0%
!!! CCTTATTTCTATAAAAGATT+GGG - chr2.2:66324704-66324723 None:intergenic 20.0%
!!! CTTATTTCTATAAAAGATTG+GGG - chr2.2:66324703-66324722 None:intergenic 20.0%
!!! CTTGTTTTTAAAACATTCAT+AGG + chr2.2:66325900-66325919 MS.gene43603:intron 20.0%
!!! TATGTATCAGTCTTTTATTT+TGG + chr2.2:66322136-66322155 MS.gene43603:intron 20.0%
!!! TATTATTTCTATGTTGTTAG+GGG - chr2.2:66324920-66324939 None:intergenic 20.0%
!!! TATTTTTACTTCTCTAGAAA+TGG + chr2.2:66323026-66323045 MS.gene43603:intron 20.0%
!!! TCCTTATTTCTATAAAAGAT+TGG - chr2.2:66324705-66324724 None:intergenic 20.0%
!!! TGTATTTTTTTTATCTCCTT+TGG + chr2.2:66322646-66322665 MS.gene43603:intron 20.0%
!!! TGTTATTGATTATGATATGT+TGG + chr2.2:66323601-66323620 MS.gene43603:CDS 20.0%
!!! TTAAGTTGTTTATGAAAACA+GGG - chr2.2:66322192-66322211 None:intergenic 20.0%
!!! TTTTAAAAATTACCAAAACC+AGG + chr2.2:66324425-66324444 MS.gene43603:CDS 20.0%
!!! TTTTACTAATTTATCTAGCT+CGG + chr2.2:66322083-66322102 MS.gene43603:intron 20.0%
!!! TTTTTTAACTCTCCTAAATT+CGG - chr2.2:66325946-66325965 None:intergenic 20.0%
!!! TTTTTTCTTTCATAGGAATT+AGG + chr2.2:66325780-66325799 MS.gene43603:intron 20.0%
!!! TTTTTTTTTTTTCACCACTT+TGG + chr2.2:66323566-66323585 MS.gene43603:intron 20.0%
! AAAAGAAATGCAATGTGAAA+GGG + chr2.2:66325138-66325157 MS.gene43603:intron 25.0%
! AAATAAGCAAAAATGCTAAG+GGG - chr2.2:66325986-66326005 None:intergenic 25.0%
! AATTAGTTGAAATCAGCTTA+TGG + chr2.2:66322460-66322479 MS.gene43603:intron 25.0%
! ACAAATAAGCAAAAATGCTA+AGG - chr2.2:66325988-66326007 None:intergenic 25.0%
! ACAATATCAACAAACTCAAA+GGG - chr2.2:66323912-66323931 None:intergenic 25.0%
! ATGTAATTAGCTATTTGTGA+AGG - chr2.2:66323789-66323808 None:intergenic 25.0%
! ATTAAAATCACAAACTAGGA+AGG - chr2.2:66324321-66324340 None:intergenic 25.0%
! CAAAAACCATAAGATAAACA+AGG + chr2.2:66325177-66325196 MS.gene43603:intron 25.0%
! CAAATAAGCAAAAATGCTAA+GGG - chr2.2:66325987-66326006 None:intergenic 25.0%
! CATAATACCTTACATGTAAA+TGG - chr2.2:66323107-66323126 None:intergenic 25.0%
! CATGTGCTAATTATTACAAA+AGG + chr2.2:66326023-66326042 MS.gene43603:intron 25.0%
! GAATTCAGATATATATTGAC+AGG - chr2.2:66322711-66322730 None:intergenic 25.0%
! GTTCTATCATAAACCAAATT+TGG + chr2.2:66325458-66325477 MS.gene43603:intron 25.0%
!! AACTAACCTTGTTTATCTTA+TGG - chr2.2:66325186-66325205 None:intergenic 25.0%
!! CATTTACATGTAAGGTATTA+TGG + chr2.2:66323105-66323124 MS.gene43603:intron 25.0%
!! CCCAATCTTTTATAGAAATA+AGG + chr2.2:66324701-66324720 MS.gene43603:intron 25.0%
!! TTTTTCACATTGTCATACTT+GGG - chr2.2:66322586-66322605 None:intergenic 25.0%
!!! AATTTACCTCCAATTTTTTG+AGG - chr2.2:66321915-66321934 None:intergenic 25.0%
!!! ATTTACCTCCAATTTTTTGA+GGG - chr2.2:66321914-66321933 None:intergenic 25.0%
!!! GTATTAATTTAGAGAGTGTT+TGG + chr2.2:66325745-66325764 MS.gene43603:intron 25.0%
!!! GTGTTTTTTAGTGTGAAAAT+AGG + chr2.2:66325553-66325572 MS.gene43603:intron 25.0%
!!! TATAGTGAAGAATTTTTCAG+GGG + chr2.2:66324340-66324359 MS.gene43603:intron 25.0%
!!! TATGTGCTATTTCAAATATC+AGG + chr2.2:66322795-66322814 MS.gene43603:intron 25.0%
!!! TTCTGAGAATTTTACATCTA+AGG + chr2.2:66322926-66322945 MS.gene43603:CDS 25.0%
AACTCTAACCAATGATGAAA+AGG - chr2.2:66324463-66324482 None:intergenic 30.0%
AAGAGAACACAAATATCTCA+AGG - chr2.2:66323959-66323978 None:intergenic 30.0%
AAGCTTCATAATTTCTCTCA+TGG + chr2.2:66321765-66321784 MS.gene43603:CDS 30.0%
AATAAGCAAAAATGCTAAGG+GGG - chr2.2:66325985-66326004 None:intergenic 30.0%
AATCAACAAAATTGCAGAAG+AGG - chr2.2:66323079-66323098 None:intergenic 30.0%
AATTAGGAATCATGTTTCCT+AGG + chr2.2:66325796-66325815 MS.gene43603:intron 30.0%
AATTGCAGACTTAATTCATG+AGG + chr2.2:66326133-66326152 MS.gene43603:CDS 30.0%
ACAACTTATAACTTATCGGA+AGG - chr2.2:66322307-66322326 None:intergenic 30.0%
ACATAACATCATGTCCTTTA+GGG + chr2.2:66325630-66325649 MS.gene43603:intron 30.0%
ACTCTAACCAATGATGAAAA+GGG - chr2.2:66324462-66324481 None:intergenic 30.0%
AGGAAAAACAGCATTGTTAA+TGG - chr2.2:66324186-66324205 None:intergenic 30.0%
ATAAATGCATCTGACTCATT+TGG - chr2.2:66324290-66324309 None:intergenic 30.0%
ATCAACAAAATTGCAGAAGA+GGG - chr2.2:66323078-66323097 None:intergenic 30.0%
ATCATGTGGTTTAAGAATTG+CGG - chr2.2:66323265-66323284 None:intergenic 30.0%
ATGTGTAATGATATGTTACC+AGG + chr2.2:66323359-66323378 MS.gene43603:intron 30.0%
ATTGCAGACTTAATTCATGA+GGG + chr2.2:66326134-66326153 MS.gene43603:CDS 30.0%
CAAAAGAAATGCAATGTGAA+AGG + chr2.2:66325137-66325156 MS.gene43603:intron 30.0%
CACAATATCAACAAACTCAA+AGG - chr2.2:66323913-66323932 None:intergenic 30.0%
CTAAAATGAATTAGTAGTGC+AGG + chr2.2:66325370-66325389 MS.gene43603:intron 30.0%
CTAGTAAATTTGTCATAAGC+TGG + chr2.2:66322484-66322503 MS.gene43603:intron 30.0%
CTATTTCAAATATCAGGTGA+TGG + chr2.2:66322801-66322820 MS.gene43603:intron 30.0%
GCTTATTTGTGGAATAACTT+GGG + chr2.2:66323539-66323558 MS.gene43603:intron 30.0%
GCTTGAAATGATTACTGTTA+TGG - chr2.2:66321818-66321837 None:intergenic 30.0%
GTAAATGTTCAACCATTATC+TGG + chr2.2:66323213-66323232 MS.gene43603:CDS 30.0%
TAAACCACATGATCGTATTA+TGG + chr2.2:66323272-66323291 MS.gene43603:CDS 30.0%
TAGCAAGACTATGCATATAA+TGG - chr2.2:66325230-66325249 None:intergenic 30.0%
TCAAATAAGTCGATCAAAAC+TGG + chr2.2:66322559-66322578 MS.gene43603:intron 30.0%
TCAGATATATATTGACAGGA+TGG - chr2.2:66322707-66322726 None:intergenic 30.0%
TCATGAATCCATGAGATAAA+TGG - chr2.2:66323407-66323426 None:intergenic 30.0%
TCGATAAATTCTTCGGTATA+GGG - chr2.2:66322440-66322459 None:intergenic 30.0%
TGAAATGAAGTTGAGGTAAA+AGG - chr2.2:66321794-66321813 None:intergenic 30.0%
TGCCATAATTAACAAGGAAA+AGG + chr2.2:66322872-66322891 MS.gene43603:CDS 30.0%
TGGTTTATGATAGAACACTA+TGG - chr2.2:66325454-66325473 None:intergenic 30.0%
TGTGTAATGATATGTTACCA+GGG + chr2.2:66323360-66323379 MS.gene43603:intron 30.0%
TGTTCATGCCATAATTAACA+AGG + chr2.2:66322866-66322885 MS.gene43603:CDS 30.0%
TTAATTATGGCATGAACATC+AGG - chr2.2:66322864-66322883 None:intergenic 30.0%
TTATGGTTGAAATGAAGTTG+AGG - chr2.2:66321801-66321820 None:intergenic 30.0%
TTCGATAAATTCTTCGGTAT+AGG - chr2.2:66322441-66322460 None:intergenic 30.0%
TTTACCATAATACGATCATG+TGG - chr2.2:66323279-66323298 None:intergenic 30.0%
TTTACTTGAAGCTATGAAGT+CGG + chr2.2:66324044-66324063 MS.gene43603:intron 30.0%
TTTCTATAAAAGATTGGGGA+CGG - chr2.2:66324699-66324718 None:intergenic 30.0%
! ACAAGAATTTACCTTTTACC+CGG - chr2.2:66323005-66323024 None:intergenic 30.0%
! ATCAAAATCGACTTCCAATT+TGG - chr2.2:66323332-66323351 None:intergenic 30.0%
! GTCCTTTTCCTTGTTAATTA+TGG - chr2.2:66322877-66322896 None:intergenic 30.0%
! GTTTTTCACATTGTCATACT+TGG - chr2.2:66322587-66322606 None:intergenic 30.0%
! TCTTCTGCAATTTTGTTGAT+TGG + chr2.2:66323078-66323097 MS.gene43603:intron 30.0%
! TTACATGTAAGGTATTATGG+TGG + chr2.2:66323108-66323127 MS.gene43603:intron 30.0%
! TTATATGCATAGTCTTGCTA+AGG + chr2.2:66325230-66325249 MS.gene43603:intron 30.0%
! TTTTCACATTGTCATACTTG+GGG - chr2.2:66322585-66322604 None:intergenic 30.0%
!! ATTTTACTCAAAGCACTTCT+GGG + chr2.2:66322612-66322631 MS.gene43603:intron 30.0%
!! CAGAACATACTTTTCTAAAG+CGG - chr2.2:66323703-66323722 None:intergenic 30.0%
!! CAGATATATTGGCTTATTTG+TGG + chr2.2:66323528-66323547 MS.gene43603:intron 30.0%
!! TATTTTACTCAAAGCACTTC+TGG + chr2.2:66322611-66322630 MS.gene43603:intron 30.0%
!!! AGAACATACTTTTCTAAAGC+GGG - chr2.2:66323702-66323721 None:intergenic 30.0%
!!! ATAGTGAAGAATTTTTCAGG+GGG + chr2.2:66324341-66324360 MS.gene43603:intron 30.0%
!!! ATTAACAATGCTGTTTTTCC+TGG + chr2.2:66324185-66324204 MS.gene43603:CDS 30.0%
!!! GAGAAAGAGTTTGCTTTTTT+TGG + chr2.2:66324003-66324022 MS.gene43603:intron 30.0%
AAAAGGGACATTACTATACC+TGG - chr2.2:66324446-66324465 None:intergenic 35.0%
AAACATTTCACGAGATGGAA+TGG - chr2.2:66325866-66325885 None:intergenic 35.0%
AACATTTCACGAGATGGAAT+GGG - chr2.2:66325865-66325884 None:intergenic 35.0%
AAGAATATCATACCACCTCT+AGG - chr2.2:66324125-66324144 None:intergenic 35.0%
AAGTCTTGAAGCCAAAAGTT+TGG + chr2.2:66326166-66326185 MS.gene43603:CDS 35.0%
AATGATATGTTACCAGGGTT+TGG + chr2.2:66323365-66323384 MS.gene43603:intron 35.0%
AATTGCAGAAGAGGGAAAAA+AGG - chr2.2:66323070-66323089 None:intergenic 35.0%
AGATTTAGAGGTCAATGAGT+TGG - chr2.2:66325486-66325505 None:intergenic 35.0%
AGTTGAGCATGGATATAAAC+TGG + chr2.2:66324569-66324588 MS.gene43603:CDS 35.0%
ATAATGACACTTGACACCAA+AGG - chr2.2:66322665-66322684 None:intergenic 35.0%
ATCAACATAGACTTGCAATG+GGG + chr2.2:66325309-66325328 MS.gene43603:intron 35.0%
ATCTGACTCATTTGGTACAT+AGG - chr2.2:66324282-66324301 None:intergenic 35.0%
ATGGGAATCCAAAATTCACA+TGG - chr2.2:66325847-66325866 None:intergenic 35.0%
ATTGTTAGACACTGTAACGA+AGG - chr2.2:66321992-66322011 None:intergenic 35.0%
CACATAACATCATGTCCTTT+AGG + chr2.2:66325629-66325648 MS.gene43603:intron 35.0%
CATCAACATAGACTTGCAAT+GGG + chr2.2:66325308-66325327 MS.gene43603:intron 35.0%
CGTTACAGTGTCTAACAATT+AGG + chr2.2:66321993-66322012 MS.gene43603:intron 35.0%
CTTCATAATTTCTCTCATGG+AGG + chr2.2:66321768-66321787 MS.gene43603:CDS 35.0%
GAGACAAGGTTTCAAATTTG+CGG + chr2.2:66326249-66326268 MS.gene43603:CDS 35.0%
GGCTTATTTGTGGAATAACT+TGG + chr2.2:66323538-66323557 MS.gene43603:intron 35.0%
GTGTATACTGCAAAATTAGC+CGG - chr2.2:66323243-66323262 None:intergenic 35.0%
GTTCAAGACTTCTGAATTGA+CGG - chr2.2:66322899-66322918 None:intergenic 35.0%
TATATCCATGCTCAACTAAC+CGG - chr2.2:66324566-66324585 None:intergenic 35.0%
TATGTGAAATACAGTCAGTC+AGG - chr2.2:66325615-66325634 None:intergenic 35.0%
TCATCAACATAGACTTGCAA+TGG + chr2.2:66325307-66325326 MS.gene43603:intron 35.0%
TCATCTAGATGGTAACAAGT+GGG + chr2.2:66323188-66323207 MS.gene43603:CDS 35.0%
TCATGAAGAGATACTTTGCA+GGG - chr2.2:66321840-66321859 None:intergenic 35.0%
TCTTCTCTCCCTCAAAAAAT+TGG + chr2.2:66321903-66321922 MS.gene43603:CDS 35.0%
TCTTTCTCTTCAATCTTGAG+TGG - chr2.2:66323991-66324010 None:intergenic 35.0%
TGAAAGATTGCAGATTCAGT+AGG + chr2.2:66323822-66323841 MS.gene43603:intron 35.0%
TGACAAAATATAAGCACCTG+TGG - chr2.2:66323496-66323515 None:intergenic 35.0%
TGTAGTGCTATGTAAATTGC+TGG + chr2.2:66325529-66325548 MS.gene43603:intron 35.0%
TGTATACTGCAAAATTAGCC+GGG - chr2.2:66323242-66323261 None:intergenic 35.0%
TGTGGAGAAAATTCTTGACA+TGG + chr2.2:66325668-66325687 MS.gene43603:CDS 35.0%
TTAGCTCCTGAATTTCCTTT+GGG + chr2.2:66326227-66326246 MS.gene43603:CDS 35.0%
TTCATCTAGATGGTAACAAG+TGG + chr2.2:66323187-66323206 MS.gene43603:CDS 35.0%
TTCATGAAGAGATACTTTGC+AGG - chr2.2:66321841-66321860 None:intergenic 35.0%
TTCCATCTCGTGAAATGTTT+AGG + chr2.2:66325866-66325885 MS.gene43603:intron 35.0%
TTCCTAAACATTTCACGAGA+TGG - chr2.2:66325871-66325890 None:intergenic 35.0%
TTCTATAAAAGATTGGGGAC+GGG - chr2.2:66324698-66324717 None:intergenic 35.0%
TTGGATCCCATTTACATGTA+AGG + chr2.2:66323097-66323116 MS.gene43603:intron 35.0%
TTGTTAGACACTGTAACGAA+GGG - chr2.2:66321991-66322010 None:intergenic 35.0%
! AGCCAGCAATTTTAGATTGT+GGG + chr2.2:66324810-66324829 MS.gene43603:intron 35.0%
! ATTTTTCTCACACGTTAGCT+TGG + chr2.2:66323301-66323320 MS.gene43603:intron 35.0%
! CAATGAGTTGGATCCAAATT+TGG - chr2.2:66325474-66325493 None:intergenic 35.0%
! CATGGATATAAACTGGTTTC+TGG + chr2.2:66324576-66324595 MS.gene43603:CDS 35.0%
! CTCTTCATGAAGCAACTTTT+GGG + chr2.2:66321850-66321869 MS.gene43603:CDS 35.0%
! GACATTACTATACCTGGTTT+TGG - chr2.2:66324440-66324459 None:intergenic 35.0%
! GTAATGTCCCTTTTCATCAT+TGG + chr2.2:66324452-66324471 MS.gene43603:intron 35.0%
! TCTCTTCATGAAGCAACTTT+TGG + chr2.2:66321849-66321868 MS.gene43603:CDS 35.0%
! TTGGTGATCTTTCTTGTTCA+TGG + chr2.2:66322769-66322788 MS.gene43603:intron 35.0%
!! AACGAAGGTGTTCATACTAT+TGG + chr2.2:66325263-66325282 MS.gene43603:intron 35.0%
!! AGGTACTGAATTCTTGTTGA+GGG - chr2.2:66325703-66325722 None:intergenic 35.0%
!! CAGCAATAATGAGTTTTGGT+CGG - chr2.2:66323646-66323665 None:intergenic 35.0%
!! TTAGCTTGGCTTTTCCAAAT+TGG + chr2.2:66323315-66323334 MS.gene43603:intron 35.0%
!! TTTAGAGAGTGTTTGGTGTA+TGG + chr2.2:66325752-66325771 MS.gene43603:intron 35.0%
!! TTTTACATCTAAGGCAGTGA+TGG + chr2.2:66322935-66322954 MS.gene43603:CDS 35.0%
!!! ATTTTTTGAGGGAGAGAAGA+AGG - chr2.2:66321903-66321922 None:intergenic 35.0%
!!! GGAGCTGTTTTTTCTTTCAT+AGG + chr2.2:66325773-66325792 MS.gene43603:intron 35.0%
!!! TAGTGAAGAATTTTTCAGGG+GGG + chr2.2:66324342-66324361 MS.gene43603:intron 35.0%
AAGAGCAACAAGCTTACTGA+TGG - chr2.2:66324639-66324658 None:intergenic 40.0%
AAGTTTGGTCTCAGGAACAA+AGG + chr2.2:66326181-66326200 MS.gene43603:CDS 40.0%
ACAAGGTTTCAAATTTGCGG+AGG + chr2.2:66326252-66326271 MS.gene43603:CDS 40.0%
ACAGCTAAAAGACGTGTATC+AGG + chr2.2:66323426-66323445 MS.gene43603:CDS 40.0%
ACAGTCAGTCAGGTACTAAA+AGG - chr2.2:66325605-66325624 None:intergenic 40.0%
AGTGGAGTTGCATCAATGAT+AGG + chr2.2:66321711-66321730 MS.gene43603:CDS 40.0%
ATATCTCAAGGCAAACCTTG+TGG - chr2.2:66323947-66323966 None:intergenic 40.0%
ATCCAAAATTCACATGGAGG+TGG - chr2.2:66325841-66325860 None:intergenic 40.0%
ATCTGCTTCTCTACATCGTA+TGG + chr2.2:66323757-66323776 MS.gene43603:intron 40.0%
CAGTTCAAGACTCCGAATTT+AGG + chr2.2:66325931-66325950 MS.gene43603:intron 40.0%
CATCTAGATGGTAACAAGTG+GGG + chr2.2:66323189-66323208 MS.gene43603:CDS 40.0%
CGAAATCCTATGCCAACAAA+GGG + chr2.2:66323152-66323171 MS.gene43603:CDS 40.0%
CGACCAAAACTCATTATTGC+TGG + chr2.2:66323644-66323663 MS.gene43603:CDS 40.0%
CTCAACAAGAATTCAGTACC+TGG + chr2.2:66325702-66325721 MS.gene43603:CDS 40.0%
GGAATCCAAAATTCACATGG+AGG - chr2.2:66325844-66325863 None:intergenic 40.0%
GTATACTGCAAAATTAGCCG+GGG - chr2.2:66323241-66323260 None:intergenic 40.0%
GTATGAACACCTTCGTTTGA+TGG - chr2.2:66325260-66325279 None:intergenic 40.0%
GTGGATTCATCAAGTCGATA+AGG - chr2.2:66323477-66323496 None:intergenic 40.0%
GTTAGCTCCTGAATTTCCTT+TGG + chr2.2:66326226-66326245 MS.gene43603:CDS 40.0%
TATCTCAAGGCAAACCTTGT+GGG - chr2.2:66323946-66323965 None:intergenic 40.0%
TCAACATAGACTTGCAATGG+GGG + chr2.2:66325310-66325329 MS.gene43603:intron 40.0%
TCCAAATTTACCTGTAGACC+AGG - chr2.2:66324206-66324225 None:intergenic 40.0%
TCCTGGTCTACAGGTAAATT+TGG + chr2.2:66324202-66324221 MS.gene43603:intron 40.0%
TCGAAATCCTATGCCAACAA+AGG + chr2.2:66323151-66323170 MS.gene43603:CDS 40.0%
TCTCTCCCTCAAAAAATTGG+AGG + chr2.2:66321906-66321925 MS.gene43603:CDS 40.0%
TGAAGCTTAGTCGAAGAAAG+AGG - chr2.2:66321753-66321772 None:intergenic 40.0%
TTCAAGAAAGATGCTGTGCA+TGG + chr2.2:66324143-66324162 MS.gene43603:CDS 40.0%
TTCATCAAGTCGATAAGGCA+TGG - chr2.2:66323472-66323491 None:intergenic 40.0%
TTGGCTGCATTTCATCTAGA+TGG + chr2.2:66323177-66323196 MS.gene43603:CDS 40.0%
TTGTCTCCCAAAGGAAATTC+AGG - chr2.2:66326236-66326255 None:intergenic 40.0%
! CACCTGTTTTCATTCCAAAG+TGG - chr2.2:66323583-66323602 None:intergenic 40.0%
! CCAGCAATTTTAGATTGTGG+GGG + chr2.2:66324812-66324831 MS.gene43603:intron 40.0%
! GAGCCAGCAATTTTAGATTG+TGG + chr2.2:66324809-66324828 MS.gene43603:intron 40.0%
! GCACCAGCAATAATGAGTTT+TGG - chr2.2:66323650-66323669 None:intergenic 40.0%
! GCCAGCAATTTTAGATTGTG+GGG + chr2.2:66324811-66324830 MS.gene43603:intron 40.0%
! GGATATAAACTGGTTTCTGG+TGG + chr2.2:66324579-66324598 MS.gene43603:CDS 40.0%
! TGAATTTCCTTTGGGAGACA+AGG + chr2.2:66326235-66326254 MS.gene43603:CDS 40.0%
! TGTTCCTGAGACCAAACTTT+TGG - chr2.2:66326180-66326199 None:intergenic 40.0%
! TTTGAAACCTTGTCTCCCAA+AGG - chr2.2:66326245-66326264 None:intergenic 40.0%
!! AAAAATGCTAAGGGGGTGTT+TGG - chr2.2:66325978-66325997 None:intergenic 40.0%
!! CACCACTTTGGAATGAAAAC+AGG + chr2.2:66323578-66323597 MS.gene43603:intron 40.0%
!! CAGGTACTGAATTCTTGTTG+AGG - chr2.2:66325704-66325723 None:intergenic 40.0%
!! CATGTCCTTTAGGGTATTGA+TGG + chr2.2:66325639-66325658 MS.gene43603:intron 40.0%
!! TATCGACTTGATGAATCCAC+AGG + chr2.2:66323477-66323496 MS.gene43603:CDS 40.0%
!! TGCGTTTCTGATGATGGATA+TGG + chr2.2:66323845-66323864 MS.gene43603:CDS 40.0%
AAGCACTTGCGAGACTGTTT+GGG - chr2.2:66322523-66322542 None:intergenic 45.0%
AATGTCTCGAGGATAAGCAC+TGG - chr2.2:66323672-66323691 None:intergenic 45.0%
ACCTGCACGATGATAGGTTT+GGG - chr2.2:66324516-66324535 None:intergenic 45.0%
AGCTTAGTCGAAGAAAGAGG+TGG - chr2.2:66321750-66321769 None:intergenic 45.0%
AGTAGGTGCGTTTCTGATGA+TGG + chr2.2:66323839-66323858 MS.gene43603:CDS 45.0%
ATGCCTCACAAACAGGTACT+CGG + chr2.2:66322971-66322990 MS.gene43603:CDS 45.0%
ATGGATATGGCTCACGTAAG+TGG + chr2.2:66323858-66323877 MS.gene43603:CDS 45.0%
ATGTTTCCTAGGAACGCAAG+GGG + chr2.2:66325807-66325826 MS.gene43603:intron 45.0%
CAAACAATGAGTCACTCACC+AGG - chr2.2:66325723-66325742 None:intergenic 45.0%
CATGGAGGCCATTTATCTCA+TGG + chr2.2:66323396-66323415 MS.gene43603:CDS 45.0%
CATGTTTCCTAGGAACGCAA+GGG + chr2.2:66325806-66325825 MS.gene43603:intron 45.0%
CATTTGATCCATGTAGCCAG+TGG - chr2.2:66325428-66325447 None:intergenic 45.0%
CCTCATAACCACACAATTGG+AGG + chr2.2:66324366-66324385 MS.gene43603:CDS 45.0%
CCTCCAATTGTGTGGTTATG+AGG - chr2.2:66324369-66324388 None:intergenic 45.0%
CGGGAATAATCAATGTCTCG+AGG - chr2.2:66323683-66323702 None:intergenic 45.0%
GAAGCCAAAAGTTTGGTCTC+AGG + chr2.2:66326173-66326192 MS.gene43603:CDS 45.0%
GACTGTTTGGGAGAACATAC+AGG - chr2.2:66322511-66322530 None:intergenic 45.0%
GAGCACCATCAATACCCTAA+AGG - chr2.2:66325647-66325666 None:intergenic 45.0%
GCAATGACAACAAGAGGACT+TGG + chr2.2:66326092-66326111 MS.gene43603:CDS 45.0%
GCTACTCAGTATCCTATTCC+TGG + chr2.2:66326290-66326309 MS.gene43603:CDS 45.0%
GGTCCTCATAACCACACAAT+TGG + chr2.2:66324363-66324382 MS.gene43603:CDS 45.0%
TAACCACACAATTGGAGGAC+TGG + chr2.2:66324371-66324390 MS.gene43603:CDS 45.0%
TCACCAGCAATGACAACAAG+AGG + chr2.2:66326086-66326105 MS.gene43603:CDS 45.0%
TCATGTTTCCTAGGAACGCA+AGG + chr2.2:66325805-66325824 MS.gene43603:intron 45.0%
TGAGATAAATGGCCTCCATG+AGG - chr2.2:66323396-66323415 None:intergenic 45.0%
TGGATATGGCTCACGTAAGT+GGG + chr2.2:66323859-66323878 MS.gene43603:CDS 45.0%
TTAGACACTGTAACGAAGGG+TGG - chr2.2:66321988-66322007 None:intergenic 45.0%
TTGGTTCATGCCTCACAAAC+AGG + chr2.2:66322964-66322983 MS.gene43603:CDS 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr2.2:66324767-66324786 MS.gene43603:intron 45.0%
! ACCTGGTTCTTGTTGATCTG+AGG + chr2.2:66324613-66324632 MS.gene43603:CDS 45.0%
! AGCCACTTAGAGCTTTGTGT+GGG - chr2.2:66325402-66325421 None:intergenic 45.0%
! AGTCCTCTTGTTGTCATTGC+TGG - chr2.2:66326092-66326111 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr2.2:66324766-66324785 MS.gene43603:intron 45.0%
! CCCCCACAATCTAAAATTGC+TGG - chr2.2:66324815-66324834 None:intergenic 45.0%
! GGATCTAGCTTCTTGGACTA+TGG + chr2.2:66322822-66322841 MS.gene43603:CDS 45.0%
! TAAGGCTAGCCATCAAACGA+AGG + chr2.2:66325248-66325267 MS.gene43603:intron 45.0%
! TCAACCATTATCTGGTTCCC+CGG + chr2.2:66323221-66323240 MS.gene43603:CDS 45.0%
! TGGTGGTAGTGATAATCACC+TGG + chr2.2:66324596-66324615 MS.gene43603:CDS 45.0%
!! AGGTGATGGATCTAGCTTCT+TGG + chr2.2:66322815-66322834 MS.gene43603:intron 45.0%
!!! TGCTGTTTTTCCTGGTCTAC+AGG + chr2.2:66324193-66324212 MS.gene43603:CDS 45.0%
ACTGCAGAGCTCTTGCTAAC+CGG + chr2.2:66324544-66324563 MS.gene43603:CDS 50.0%
AGGGAGAGAAGAAGGAGAAG+AGG - chr2.2:66321895-66321914 None:intergenic 50.0%
ATGCAGCCAATGCCCTTTGT+TGG - chr2.2:66323167-66323186 None:intergenic 50.0%
CAAACCTATCATCGTGCAGG+TGG + chr2.2:66324515-66324534 MS.gene43603:intron 50.0%
CACCTGCACGATGATAGGTT+TGG - chr2.2:66324517-66324536 None:intergenic 50.0%
CAGGGTTTGGATTTGCCTCA+TGG + chr2.2:66323378-66323397 MS.gene43603:intron 50.0%
CATGAGGCAAATCCAAACCC+TGG - chr2.2:66323380-66323399 None:intergenic 50.0%
CCAATGCCCTTTGTTGGCAT+AGG - chr2.2:66323161-66323180 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr2.2:66324768-66324787 None:intergenic 50.0%
CTCACAAACAGGTACTCGGA+AGG + chr2.2:66322975-66322994 MS.gene43603:CDS 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr2.2:66324771-66324790 MS.gene43603:intron 50.0%
CTTCCGAGTACCTGTTTGTG+AGG - chr2.2:66322977-66322996 None:intergenic 50.0%
GACTTCCTCCAGTCTTTGAG+AGG + chr2.2:66324098-66324117 MS.gene43603:intron 50.0%
GCAATGTGAAAGGGTCGTAG+TGG + chr2.2:66325147-66325166 MS.gene43603:intron 50.0%
GCCTCAGATCAACAAGAACC+AGG - chr2.2:66324617-66324636 None:intergenic 50.0%
GGTTTGGATTTGCCTCATGG+AGG + chr2.2:66323381-66323400 MS.gene43603:CDS 50.0%
TAGGACCTCTCAAAGACTGG+AGG - chr2.2:66324106-66324125 None:intergenic 50.0%
TCATTGCTGGTGAACCGATG+CGG - chr2.2:66326079-66326098 None:intergenic 50.0%
TCCCAAACCTATCATCGTGC+AGG + chr2.2:66324512-66324531 MS.gene43603:intron 50.0%
TGTTTCCTAGGAACGCAAGG+GGG + chr2.2:66325808-66325827 MS.gene43603:intron 50.0%
TTAGCCGGGGAACCAGATAA+TGG - chr2.2:66323228-66323247 None:intergenic 50.0%
TTGATCCATGTAGCCAGTGG+CGG - chr2.2:66325425-66325444 None:intergenic 50.0%
! AAGGCAAACCTTGTGGGTTG+TGG - chr2.2:66323940-66323959 None:intergenic 50.0%
! AAGGCAGTGATGGAAGCAGT+TGG + chr2.2:66322945-66322964 MS.gene43603:CDS 50.0%
! CAGTCTTTGAGAGGTCCTAG+AGG + chr2.2:66324107-66324126 MS.gene43603:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr2.2:66324765-66324784 MS.gene43603:intron 50.0%
! CCTATGCCAACAAAGGGCAT+TGG + chr2.2:66323158-66323177 MS.gene43603:CDS 50.0%
! GAAGCACTTGCGAGACTGTT+TGG - chr2.2:66322524-66322543 None:intergenic 50.0%
! GAGCCACTTAGAGCTTTGTG+TGG - chr2.2:66325403-66325422 None:intergenic 50.0%
! GCTAACCGGTTAGTTGAGCA+TGG + chr2.2:66324558-66324577 MS.gene43603:CDS 50.0%
! GGCCACCTCCATGTGAATTT+TGG + chr2.2:66325836-66325855 MS.gene43603:intron 50.0%
! TCTTTGAGAGGTCCTAGAGG+TGG + chr2.2:66324110-66324129 MS.gene43603:CDS 50.0%
! TGCTGTGCATGGAGTTGATC+TGG + chr2.2:66324154-66324173 MS.gene43603:CDS 50.0%
!! AAAAGGTGACAAGAGTGCCC+TGG + chr2.2:66326040-66326059 MS.gene43603:intron 50.0%
!! CTAAGGGGGTGTTTGGTAGT+GGG - chr2.2:66325971-66325990 None:intergenic 50.0%
!! CTCTAGGACCTCTCAAAGAC+TGG - chr2.2:66324109-66324128 None:intergenic 50.0%
!! TGCCCACACAAAGCTCTAAG+TGG + chr2.2:66325397-66325416 MS.gene43603:intron 50.0%
AAACACCCCCTTGCGTTCCT+AGG - chr2.2:66325816-66325835 None:intergenic 55.0%
AGGTACTCGGAAGGTTTGCC+GGG + chr2.2:66322984-66323003 MS.gene43603:CDS 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr2.2:66324780-66324799 None:intergenic 55.0%
CAGGTACTCGGAAGGTTTGC+CGG + chr2.2:66322983-66323002 MS.gene43603:CDS 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr2.2:66324773-66324792 None:intergenic 55.0%
CGGAAGGTTTGCCGGGTAAA+AGG + chr2.2:66322991-66323010 MS.gene43603:CDS 55.0%
CTGCCAGTCCTCCAATTGTG+TGG - chr2.2:66324377-66324396 None:intergenic 55.0%
GCAACCACCTGCACGATGAT+AGG - chr2.2:66324522-66324541 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr2.2:66324779-66324798 None:intergenic 55.0%
TGTGACCACCACAACCCACA+AGG + chr2.2:66323929-66323948 MS.gene43603:CDS 55.0%
! AGACTTGCAATGGGGGCATG+TGG + chr2.2:66325317-66325336 MS.gene43603:intron 55.0%
! GCAAACCTTGTGGGTTGTGG+TGG - chr2.2:66323937-66323956 None:intergenic 55.0%
! TTGCAATGGGGGCATGTGGT+TGG + chr2.2:66325321-66325340 MS.gene43603:intron 55.0%
!! GCTAAGGGGGTGTTTGGTAG+TGG - chr2.2:66325972-66325991 None:intergenic 55.0%
!! GGGTATTGATGGTGCTCGTG+TGG + chr2.2:66325650-66325669 MS.gene43603:intron 55.0%
!! TAGGAACGCAAGGGGGTGTT+TGG + chr2.2:66325815-66325834 MS.gene43603:intron 55.0%
GGGTCGGCTACATGCAGTGT+CGG + chr2.2:66324787-66324806 MS.gene43603:intron 60.0%
TGAACCGATGCGGATGCCTC+CGG - chr2.2:66326069-66326088 None:intergenic 60.0%
!! GACAAGAGTGCCCTGGTTCC+CGG + chr2.2:66326047-66326066 MS.gene43603:CDS 60.0%
GAACCGATGCGGATGCCTCC+GGG - chr2.2:66326068-66326087 None:intergenic 65.0%
GCAACTCCACTACACGCCGC+AGG - chr2.2:66321702-66321721 None:intergenic 65.0%
! GCTCTAAGTGGCTCCGCCAC+TGG + chr2.2:66325409-66325428 MS.gene43603:intron 65.0%
! TGGCTCCGCCACTGGCTACA+TGG + chr2.2:66325417-66325436 MS.gene43603:intron 65.0%
!! AAGAGTGCCCTGGTTCCCGG+AGG + chr2.2:66326050-66326069 MS.gene43603:CDS 65.0%
!! GTTCCCGGAGGCATCCGCAT+CGG + chr2.2:66326062-66326081 MS.gene43603:CDS 65.0%
GCGGATGCCTCCGGGAACCA+GGG - chr2.2:66326060-66326079 None:intergenic 70.0%
TGCGGATGCCTCCGGGAACC+AGG - chr2.2:66326061-66326080 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 66321696 66326319 66321696 ID=MS.gene43603
chr2.2 mRNA 66321696 66326319 66321696 ID=MS.gene43603.t1;Parent=MS.gene43603
chr2.2 exon 66321696 66321927 66321696 ID=MS.gene43603.t1.exon1;Parent=MS.gene43603.t1
chr2.2 CDS 66321696 66321927 66321696 ID=cds.MS.gene43603.t1;Parent=MS.gene43603.t1
chr2.2 exon 66322817 66323012 66322817 ID=MS.gene43603.t1.exon2;Parent=MS.gene43603.t1
chr2.2 CDS 66322817 66323012 66322817 ID=cds.MS.gene43603.t1;Parent=MS.gene43603.t1
chr2.2 exon 66323119 66323293 66323119 ID=MS.gene43603.t1.exon3;Parent=MS.gene43603.t1
chr2.2 CDS 66323119 66323293 66323119 ID=cds.MS.gene43603.t1;Parent=MS.gene43603.t1
chr2.2 exon 66323381 66323498 66323381 ID=MS.gene43603.t1.exon4;Parent=MS.gene43603.t1
chr2.2 CDS 66323381 66323498 66323381 ID=cds.MS.gene43603.t1;Parent=MS.gene43603.t1
chr2.2 exon 66323600 66323712 66323600 ID=MS.gene43603.t1.exon5;Parent=MS.gene43603.t1
chr2.2 CDS 66323600 66323712 66323600 ID=cds.MS.gene43603.t1;Parent=MS.gene43603.t1
chr2.2 exon 66323828 66323950 66323828 ID=MS.gene43603.t1.exon6;Parent=MS.gene43603.t1
chr2.2 CDS 66323828 66323950 66323828 ID=cds.MS.gene43603.t1;Parent=MS.gene43603.t1
chr2.2 exon 66324110 66324214 66324110 ID=MS.gene43603.t1.exon7;Parent=MS.gene43603.t1
chr2.2 CDS 66324110 66324214 66324110 ID=cds.MS.gene43603.t1;Parent=MS.gene43603.t1
chr2.2 exon 66324360 66324446 66324360 ID=MS.gene43603.t1.exon8;Parent=MS.gene43603.t1
chr2.2 CDS 66324360 66324446 66324360 ID=cds.MS.gene43603.t1;Parent=MS.gene43603.t1
chr2.2 exon 66324534 66324641 66324534 ID=MS.gene43603.t1.exon9;Parent=MS.gene43603.t1
chr2.2 CDS 66324534 66324641 66324534 ID=cds.MS.gene43603.t1;Parent=MS.gene43603.t1
chr2.2 exon 66325651 66325723 66325651 ID=MS.gene43603.t1.exon10;Parent=MS.gene43603.t1
chr2.2 CDS 66325651 66325723 66325651 ID=cds.MS.gene43603.t1;Parent=MS.gene43603.t1
chr2.2 exon 66326045 66326319 66326045 ID=MS.gene43603.t1.exon11;Parent=MS.gene43603.t1
chr2.2 CDS 66326045 66326319 66326045 ID=cds.MS.gene43603.t1;Parent=MS.gene43603.t1
Gene Sequence

>MS.gene43603

ATGCCTGCGGCGTGTAGTGGAGTTGCATCAATGATAGGTTCTTTACAACAACCACCTCTTTCTTCGACTAAGCTTCATAATTTCTCTCATGGAGGCCTTTTACCTCAACTTCATTTCAACCATAACAGTAATCATTTCAAGCCCTGCAAAGTATCTCTTCATGAAGCAACTTTTGGGAAATCTTCATCATCATCTTCCTCTTCTCCTTCTTCTCTCCCTCAAAAAATTGGAGGTAAATTCTCTCTCTTTTTTCCATTTCATTTTTTGATTCTATTTGCTTTAATATTATCCACCCTTCGTTACAGTGTCTAACAATTAGGATAGATAGTATATATAAATTGTCTGAGTTTAATTGAATATTACTGCAACATGCAATCTATTTTATTTTTTTACTAATTTATCTAGCTCGGTTCCATCTATATTTATTATACATGTTTTGTTATGTATCAGTCTTTTATTTTGGTTTAATTTTATTTTCATTAGTAATTTTTTGCCCTGTTTTCATAAACAACTTAATTAAGTGCTTATAGCATAAACATATATATAAGTGCTTGTGTAAAAGCTATATCTTTAACAAAAGATAAAATGAAGTCTTTTTTTTTTTTTTGCCTTCCGATAAGTTATAAGTTGTTTTTATTTATAAGCTGGTAAACAAACACAAGACAACTTCTGCTTTTTTGAAAAAATCTCTATGTTTGTGAGTATCAAAGTCACTTTTTTTTATAATTGGTAACAAACATACCCTATACCGAAGAATTTATCGAAATTAGTTGAAATCAGCTTATGGACTAGTAAATTTGTCATAAGCTGGTCCTGTATGTTCTCCCAAACAGTCTCGCAAGTGCTTCTGTCAACAAATAAGCTCAAATAAGTCGATCAAAACTGGCCCCAAGTATGACAATGTGAAAAACAATATATTTTACTCAAAGCACTTCTGGGATATTTGTTTCTGTATTTTTTTTATCTCCTTTGGTGTCAAGTGTCATTATAAAGTTCATGTTTTTTATGCCATCCTGTCAATATATATCTGAATTCTGTATTTTGTATACCGAAATTTAAATATATATGCATGCTTGGTGATCTTTCTTGTTCATGGAATTATGTGCTATTTCAAATATCAGGTGATGGATCTAGCTTCTTGGACTATGGCTTGAGTGAAGCTGATCCTGATGTTCATGCCATAATTAACAAGGAAAAGGACCGTCAATTCAGAAGTCTTGAACTTATTGCTTCTGAGAATTTTACATCTAAGGCAGTGATGGAAGCAGTTGGTTCATGCCTCACAAACAGGTACTCGGAAGGTTTGCCGGGTAAAAGGTAAATTCTTGTCTATTTTTACTTCTCTAGAAATGGGAGTTTTACTTGAAGTTTCCTTTTTTCCCTCTTCTGCAATTTTGTTGATTGGATCCCATTTACATGTAAGGTATTATGGTGGCAATGAGCACATTGATGAGCTCGAAATCCTATGCCAACAAAGGGCATTGGCTGCATTTCATCTAGATGGTAACAAGTGGGGTGTAAATGTTCAACCATTATCTGGTTCCCCGGCTAATTTTGCAGTATACACCGCAATTCTTAAACCACATGATCGTATTATGGTAAACTATTTTTCTCACACGTTAGCTTGGCTTTTCCAAATTGGAAGTCGATTTTGATAGCGTTCATGTGTAATGATATGTTACCAGGGTTTGGATTTGCCTCATGGAGGCCATTTATCTCATGGATTCATGACAGCTAAAAGACGTGTATCAGGCACATCAATTTATTTTGAATCCATGCCTTATCGACTTGATGAATCCACAGGTGCTTATATTTTGTCATTAAAATCGTTTCAGATATATTGGCTTATTTGTGGAATAACTTGGGATTATTTTTTTTTTTTCACCACTTTGGAATGAAAACAGGTGTTATTGATTATGATATGTTGGAGAAAACTGCTGCTCTATTCCGACCAAAACTCATTATTGCTGGTGCCAGTGCTTATCCTCGAGACATTGATTATTCCCGCTTTAGAAAAGTATGTTCTGTACTTGAGCATTTTCTGATATTATAATCATCATTATCTGCTTCTCTACATCGTATGGCTTTTTCCTTCACAAATAGCTAATTACATCTTTATATGCAAATGAAAGATTGCAGATTCAGTAGGTGCGTTTCTGATGATGGATATGGCTCACGTAAGTGGGCTTATTGCTGCTTCTGTTCTTGCTGATCCCTTTGAGTTTGTTGATATTGTGACCACCACAACCCACAAGGTTTGCCTTGAGATATTTGTGTTCTCTTTGTATTTTTCCACTCAAGATTGAAGAGAAAGAGTTTGCTTTTTTTGGTTTAAAAACATAATTCTATTTACTTGAAGCTATGAAGTCGGTACTTTTCTTTGTAATACTCACAACACTCATGACTTCCTCCAGTCTTTGAGAGGTCCTAGAGGTGGTATGATATTCTTCAAGAAAGATGCTGTGCATGGAGTTGATCTGGAGTCTGCCATTAACAATGCTGTTTTTCCTGGTCTACAGGTAAATTTGGAATGTCCTCTAATTAGTTCTTTTTTAACTATTCTGATTGAGAAAGTGCATGAATCCTATGTACCAAATGAGTCAGATGCATTTATCTTCTTTACCTTCCTAGTTTGTGATTTTAATATAGTGAAGAATTTTTCAGGGGGGTCCTCATAACCACACAATTGGAGGACTGGCAGTTTGCTTGAAGTATGCTCAGTCTCCAGATTTTAAAAATTACCAAAACCAGGTATAGTAATGTCCCTTTTCATCATTGGTTAGAGTTTGACATAAAGCACTTTGTAACAATAACACTCCCAAACCTATCATCGTGCAGGTGGTTGCTAACTGCAGAGCTCTTGCTAACCGGTTAGTTGAGCATGGATATAAACTGGTTTCTGGTGGTAGTGATAATCACCTGGTTCTTGTTGATCTGAGGCCATCAGTAAGCTTGTTGCTCTTTTCTTTGTCAATATAATGATAATTCTGTCTTGGCTTCCCGTCCCCAATCTTTTATAGAAATAAGGAGTGTGAAATTTTCTGAAAAAAATTTGTACAACAACAACAACCAAGCCTTATCCCACTAAGTGGGGTCGGCTACATGCAGTGTCGGAGCCAGCAATTTTAGATTGTGGGGGCAATATTCATATACTTGAATGTTAAAAATACTATTAAAAAAAATCTTTTTAAGATTCTTCAAGTAAAAAAAAGTGAAATAAACCCCTAACAACATAGAAATAATAATACTTTTATAAAATCACTCTTATCAAATATTAATACATTTTTATAGATACAAAGTGAAAGTTATTGACTTGAGAATATTGCCTAAAAAAAATAATGCAAATATTAGGGTACAATTAGAAAAAATTTATTAAAATTGCATTGAAAATTAAAATGATAATTTAATTTGAAACAATTTTAGTATAAATCATTAATTGCTCAAAAGAAATGCAATGTGAAAGGGTCGTAGTGGAGACTTACAAAAACCATAAGATAAACAAGGTTAGTTAATGAGAAGCAGAAAATGCATCCATTATATGCATAGTCTTGCTAAGGCTAGCCATCAAACGAAGGTGTTCATACTATTGGTTGACAATGTTCAGCATAAACTCATCAACATAGACTTGCAATGGGGGCATGTGGTTGGCATATATATATATATACCATCATATACTAAAATGAATTAGTAGTGCAGGCACATGCCCACACAAAGCTCTAAGTGGCTCCGCCACTGGCTACATGGATCAAATGACGCCATAGTGTTCTATCATAAACCAAATTTGGATCCAACTCATTGACCTCTAAATCTTTTCTAAAATTTTCTGAAAAATTTGTAGTGCTATGTAAATTGCTGGCGTGTTTTTTAGTGTGAAAATAGGTTTGATTTTTCTTATTGATGTATATTCCTTTTAGTACCTGACTGACTGTATTTCACATAACATCATGTCCTTTAGGGTATTGATGGTGCTCGTGTGGAGAAAATTCTTGACATGGCTTCTATAACCCTCAACAAGAATTCAGTACCTGGTGAGTGACTCATTGTTTGTTGTATTAATTTAGAGAGTGTTTGGTGTATGGAGCTGTTTTTTCTTTCATAGGAATTAGGAATCATGTTTCCTAGGAACGCAAGGGGGTGTTTGGCCACCTCCATGTGAATTTTGGATTCCCATTCCATCTCGTGAAATGTTTAGGAATGTTAATTTCTTGTTTTTAAAACATTCATAGGAATCATGACAGTTCAAGACTCCGAATTTAGGAGAGTTAAAAAAATCCCACTACCAAACACCCCCTTAGCATTTTTGCTTATTTGTTGTGATTATGACTGACATGTGCTAATTATTACAAAAGGTGACAAGAGTGCCCTGGTTCCCGGAGGCATCCGCATCGGTTCACCAGCAATGACAACAAGAGGACTTGGTGAGAGAGAATTTGAATTAATTGCAGACTTAATTCATGAGGGTGTGCAGATAAGTCTTGAAGCCAAAAGTTTGGTCTCAGGAACAAAGGTTCAAGATTTTCTAAACTTTGTGTTAGCTCCTGAATTTCCTTTGGGAGACAAGGTTTCAAATTTGCGGAGGAAAGTTGAAGCTCTTGCTACTCAGTATCCTATTCCTGGAGTCTAA
Protein sequence

>MS.gene43603.t1

MPAACSGVASMIGSLQQPPLSSTKLHNFSHGGLLPQLHFNHNSNHFKPCKVSLHEATFGKSSSSSSSSPSSLPQKIGGDGSSFLDYGLSEADPDVHAIINKEKDRQFRSLELIASENFTSKAVMEAVGSCLTNRYSEGLPGKRYYGGNEHIDELEILCQQRALAAFHLDGNKWGVNVQPLSGSPANFAVYTAILKPHDRIMGLDLPHGGHLSHGFMTAKRRVSGTSIYFESMPYRLDESTGVIDYDMLEKTAALFRPKLIIAGASAYPRDIDYSRFRKIADSVGAFLMMDMAHVSGLIAASVLADPFEFVDIVTTTTHKSLRGPRGGMIFFKKDAVHGVDLESAINNAVFPGLQGGPHNHTIGGLAVCLKYAQSPDFKNYQNQVVANCRALANRLVEHGYKLVSGGSDNHLVLVDLRPSGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGLGEREFELIADLIHEGVQISLEAKSLVSGTKVQDFLNFVLAPEFPLGDKVSNLRRKVEALATQYPIPGV