Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43757.t1 | XP_003615587.1 | 90.9 | 552 | 50 | 0 | 91 | 642 | 53 | 604 | 4.40E-303 | 1050 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43757.t1 | A7LXU3 | 31.9 | 555 | 322 | 16 | 125 | 640 | 122 | 659 | 4.1e-68 | 260.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43757.t1 | G7K6A7 | 90.9 | 552 | 50 | 0 | 91 | 642 | 53 | 604 | 3.1e-303 | 1050.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050577 | MS.gene43757 | -0.806481 | 8.06E-50 | -1.69E-46 |
MS.gene054706 | MS.gene43757 | 0.810101 | 1.36E-50 | -1.69E-46 |
MS.gene05589 | MS.gene43757 | -0.801349 | 9.39E-49 | -1.69E-46 |
MS.gene056504 | MS.gene43757 | -0.807112 | 5.93E-50 | -1.69E-46 |
MS.gene056590 | MS.gene43757 | 0.803398 | 3.55E-49 | -1.69E-46 |
MS.gene056591 | MS.gene43757 | 0.802588 | 5.22E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43757.t1 | MTR_5g069800 | 90.942 | 552 | 50 | 0 | 91 | 642 | 53 | 604 | 0.0 | 1056 |
MS.gene43757.t1 | MTR_5g069740 | 91.007 | 556 | 38 | 1 | 87 | 642 | 49 | 592 | 0.0 | 1047 |
MS.gene43757.t1 | MTR_3g462820 | 76.623 | 539 | 125 | 1 | 102 | 640 | 80 | 617 | 0.0 | 872 |
MS.gene43757.t1 | MTR_6g028090 | 56.822 | 535 | 227 | 3 | 106 | 639 | 90 | 621 | 0.0 | 634 |
MS.gene43757.t1 | MTR_6g028100 | 56.691 | 538 | 229 | 3 | 103 | 639 | 87 | 621 | 0.0 | 627 |
MS.gene43757.t1 | MTR_7g086030 | 56.415 | 530 | 227 | 3 | 111 | 639 | 71 | 597 | 0.0 | 622 |
MS.gene43757.t1 | MTR_6g028120 | 56.147 | 545 | 230 | 4 | 95 | 638 | 65 | 601 | 0.0 | 622 |
MS.gene43757.t1 | MTR_7g086030 | 56.415 | 530 | 227 | 3 | 111 | 639 | 96 | 622 | 0.0 | 621 |
MS.gene43757.t1 | MTR_6g028110 | 55.762 | 538 | 234 | 3 | 103 | 639 | 88 | 622 | 0.0 | 620 |
MS.gene43757.t1 | MTR_6g028110 | 55.762 | 538 | 234 | 3 | 103 | 639 | 88 | 622 | 0.0 | 618 |
MS.gene43757.t1 | MTR_3g079750 | 54.613 | 542 | 242 | 3 | 101 | 641 | 85 | 623 | 0.0 | 617 |
MS.gene43757.t1 | MTR_2g030000 | 55.866 | 537 | 233 | 3 | 103 | 638 | 89 | 622 | 0.0 | 616 |
MS.gene43757.t1 | MTR_7g086010 | 55.200 | 375 | 166 | 1 | 111 | 485 | 106 | 478 | 3.56e-150 | 443 |
MS.gene43757.t1 | MTR_5g062650 | 27.611 | 565 | 318 | 22 | 136 | 641 | 111 | 643 | 9.98e-40 | 156 |
MS.gene43757.t1 | MTR_5g062430 | 26.266 | 632 | 371 | 24 | 70 | 641 | 44 | 640 | 6.25e-38 | 150 |
MS.gene43757.t1 | MTR_5g062320 | 27.194 | 581 | 334 | 24 | 124 | 641 | 84 | 638 | 8.09e-38 | 150 |
MS.gene43757.t1 | MTR_3g074060 | 27.336 | 578 | 339 | 24 | 124 | 642 | 80 | 635 | 1.00e-37 | 150 |
MS.gene43757.t1 | MTR_5g062370 | 27.194 | 581 | 334 | 24 | 124 | 641 | 86 | 640 | 5.03e-37 | 148 |
MS.gene43757.t1 | MTR_7g109390 | 26.889 | 569 | 322 | 25 | 133 | 640 | 88 | 623 | 4.26e-35 | 142 |
MS.gene43757.t1 | MTR_4g094285 | 28.187 | 557 | 318 | 24 | 123 | 630 | 89 | 612 | 9.55e-35 | 141 |
MS.gene43757.t1 | MTR_1g087240 | 27.193 | 570 | 320 | 23 | 133 | 640 | 83 | 619 | 1.75e-33 | 137 |
MS.gene43757.t1 | MTR_2g008240 | 27.387 | 555 | 325 | 26 | 123 | 630 | 90 | 613 | 6.08e-32 | 132 |
MS.gene43757.t1 | MTR_5g062370 | 27.429 | 525 | 309 | 22 | 124 | 601 | 86 | 585 | 8.74e-32 | 131 |
MS.gene43757.t1 | MTR_1g106860 | 25.939 | 586 | 346 | 25 | 123 | 646 | 73 | 632 | 3.23e-31 | 130 |
MS.gene43757.t1 | MTR_5g069850 | 83.333 | 60 | 10 | 0 | 567 | 626 | 1 | 60 | 9.04e-31 | 115 |
MS.gene43757.t1 | MTR_2g034720 | 25.254 | 590 | 351 | 23 | 115 | 642 | 63 | 624 | 7.02e-30 | 126 |
MS.gene43757.t1 | MTR_5g030860 | 27.140 | 549 | 305 | 25 | 123 | 611 | 77 | 590 | 1.31e-27 | 119 |
MS.gene43757.t1 | MTR_7g016900 | 82.000 | 50 | 9 | 0 | 32 | 81 | 595 | 644 | 6.33e-17 | 85.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene43757.t1 | AT3G47000 | 69.517 | 538 | 161 | 2 | 102 | 638 | 68 | 603 | 0.0 | 796 |
MS.gene43757.t1 | AT3G47040 | 67.652 | 541 | 172 | 2 | 102 | 641 | 68 | 606 | 0.0 | 784 |
MS.gene43757.t1 | AT3G47010 | 67.283 | 541 | 174 | 2 | 102 | 641 | 69 | 607 | 0.0 | 784 |
MS.gene43757.t1 | AT3G47010 | 67.098 | 541 | 174 | 3 | 102 | 641 | 69 | 606 | 0.0 | 778 |
MS.gene43757.t1 | AT3G47040 | 64.664 | 566 | 172 | 3 | 102 | 641 | 68 | 631 | 0.0 | 770 |
MS.gene43757.t1 | AT3G47050 | 68.773 | 538 | 163 | 3 | 102 | 638 | 68 | 601 | 0.0 | 767 |
MS.gene43757.t1 | AT3G47040 | 62.195 | 574 | 181 | 5 | 102 | 641 | 68 | 639 | 0.0 | 734 |
MS.gene43757.t1 | AT3G47000 | 68.458 | 428 | 132 | 2 | 212 | 638 | 1 | 426 | 0.0 | 625 |
MS.gene43757.t1 | AT5G04885 | 54.762 | 546 | 237 | 5 | 94 | 638 | 102 | 638 | 0.0 | 617 |
MS.gene43757.t1 | AT5G04885 | 54.762 | 546 | 237 | 5 | 94 | 638 | 85 | 621 | 0.0 | 617 |
MS.gene43757.t1 | AT5G04885 | 54.762 | 546 | 237 | 5 | 94 | 638 | 85 | 621 | 0.0 | 617 |
MS.gene43757.t1 | AT3G47010 | 64.965 | 431 | 147 | 3 | 212 | 641 | 1 | 428 | 0.0 | 606 |
MS.gene43757.t1 | AT3G47000 | 71.204 | 382 | 110 | 0 | 102 | 483 | 68 | 449 | 0.0 | 596 |
MS.gene43757.t1 | AT3G47010 | 69.634 | 382 | 116 | 0 | 102 | 483 | 69 | 450 | 0.0 | 584 |
MS.gene43757.t1 | AT5G20950 | 54.174 | 539 | 242 | 4 | 101 | 638 | 83 | 617 | 0.0 | 583 |
MS.gene43757.t1 | AT5G20950 | 54.174 | 539 | 242 | 4 | 101 | 638 | 83 | 617 | 0.0 | 583 |
MS.gene43757.t1 | AT5G20950 | 54.074 | 540 | 243 | 4 | 101 | 639 | 161 | 696 | 0.0 | 582 |
MS.gene43757.t1 | AT3G47040 | 68.848 | 382 | 119 | 0 | 102 | 483 | 68 | 449 | 0.0 | 580 |
MS.gene43757.t1 | AT5G20940 | 54.820 | 529 | 232 | 4 | 111 | 638 | 99 | 621 | 0.0 | 565 |
MS.gene43757.t1 | AT3G62710 | 49.186 | 553 | 248 | 11 | 107 | 638 | 108 | 648 | 3.01e-171 | 503 |
MS.gene43757.t1 | AT3G47050 | 69.745 | 314 | 95 | 0 | 102 | 415 | 68 | 381 | 3.66e-164 | 476 |
MS.gene43757.t1 | AT1G02640 | 27.461 | 579 | 330 | 23 | 124 | 642 | 80 | 628 | 8.27e-35 | 141 |
MS.gene43757.t1 | AT5G64570 | 27.925 | 530 | 319 | 22 | 123 | 613 | 94 | 599 | 2.38e-31 | 130 |
MS.gene43757.t1 | AT3G19620 | 26.065 | 587 | 331 | 28 | 124 | 641 | 77 | 629 | 3.03e-31 | 130 |
MS.gene43757.t1 | AT5G09730 | 26.923 | 546 | 328 | 20 | 123 | 625 | 84 | 601 | 4.74e-31 | 129 |
MS.gene43757.t1 | AT5G49360 | 26.802 | 541 | 324 | 23 | 144 | 640 | 116 | 628 | 8.70e-30 | 125 |
MS.gene43757.t1 | AT5G10560 | 27.675 | 542 | 320 | 25 | 124 | 611 | 78 | 601 | 1.59e-29 | 125 |
MS.gene43757.t1 | AT1G78060 | 26.629 | 537 | 322 | 23 | 124 | 613 | 74 | 585 | 5.24e-28 | 120 |
MS.gene43757.t1 | AT5G64570 | 26.816 | 537 | 330 | 22 | 123 | 620 | 94 | 606 | 8.21e-27 | 115 |
MS.gene43757.t1 | AT5G64570 | 27.655 | 452 | 282 | 18 | 184 | 613 | 13 | 441 | 3.14e-25 | 111 |
MS.gene43757.t1 | AT5G38880 | 74.000 | 50 | 12 | 1 | 32 | 81 | 617 | 665 | 2.27e-13 | 73.9 |
Find 168 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCCTTATTCCCTCTTGGTTA+TGG | 0.150094 | 5.1:-54081628 | MS.gene43757:CDS |
CTTTGGGGATCATGACTTAA+AGG | 0.185511 | 5.1:-54081728 | MS.gene43757:CDS |
CCTTATTCCCTCTTGGTTAT+GGG | 0.218882 | 5.1:-54081627 | MS.gene43757:CDS |
ACAATTCCAGCTCCATTAAA+TGG | 0.220601 | 5.1:+54081898 | None:intergenic |
AAGATGATTTCTTATGTTTC+AGG | 0.223175 | 5.1:-54084969 | MS.gene43757:CDS |
GAACTTGTAATCCCATTTAA+TGG | 0.236450 | 5.1:-54081910 | MS.gene43757:CDS |
AAATATCATTTATCAGAAAA+TGG | 0.237478 | 5.1:+54084578 | None:intergenic |
CCCATAACCAAGAGGGAATA+AGG | 0.250774 | 5.1:+54081627 | None:intergenic |
GGAATCACAGATGTTATCTT+TGG | 0.262824 | 5.1:-54081745 | MS.gene43757:CDS |
AGCAAAGATCTGTCAGTTAA+AGG | 0.273779 | 5.1:+54084104 | None:intergenic |
GTCGATACTCTGCATGCTTA+TGG | 0.278172 | 5.1:-54093036 | MS.gene43757:CDS |
GATGAATTATGTCAACCTTA+TGG | 0.304645 | 5.1:-54084401 | MS.gene43757:CDS |
GATCGATTTCTCATTGGATT+TGG | 0.316087 | 5.1:-54093058 | MS.gene43757:CDS |
GCAGATTTAGTTCAAAGAAT+TGG | 0.329574 | 5.1:-54085994 | MS.gene43757:CDS |
GGCAACATTGTGAGGAAATA+TGG | 0.333392 | 5.1:+54089851 | None:intergenic |
ACACTTGTGATTCTGATATC+TGG | 0.335621 | 5.1:-54081850 | MS.gene43757:CDS |
TTTAACTGACAGATCTTTGC+TGG | 0.339407 | 5.1:-54084102 | MS.gene43757:CDS |
CATGGTAATAATAATGTCTA+TGG | 0.339720 | 5.1:-54089879 | MS.gene43757:CDS |
GGAGATGGAGGCACAGAAAA+AGG | 0.340117 | 5.1:-54084742 | MS.gene43757:CDS |
GGATGGACATTTACTAAGTA+TGG | 0.343875 | 5.1:-54082331 | MS.gene43757:CDS |
AACTTCAGGCACAACTATCT+TGG | 0.348806 | 5.1:-54082079 | MS.gene43757:intron |
CATGTCAATTCCAGCATTAA+TGG | 0.351444 | 5.1:+54084349 | None:intergenic |
GAATCACAGATGTTATCTTT+GGG | 0.351585 | 5.1:-54081744 | MS.gene43757:CDS |
AACTATCTTGGATGCTGTTA+AGG | 0.355539 | 5.1:-54082067 | MS.gene43757:CDS |
TAGCCCCTTGGATGATGTTC+TGG | 0.360952 | 5.1:+54084930 | None:intergenic |
GTCATCTGATAGGGCTGATA+TGG | 0.362441 | 5.1:-54089973 | MS.gene43757:CDS |
CTCATAGCATCTTCCCCATC+TGG | 0.364158 | 5.1:+54085022 | None:intergenic |
TTATGGGCTAGCTTATAATA+AGG | 0.364827 | 5.1:-54081611 | MS.gene43757:CDS |
GCCTACCTCCCAGCCACAAA+TGG | 0.372066 | 5.1:+54084906 | None:intergenic |
GCATCATCAATCCTGGATAT+TGG | 0.378396 | 5.1:+54084176 | None:intergenic |
AGGGGCTACCCATTTGTGGC+TGG | 0.380723 | 5.1:-54084915 | MS.gene43757:CDS |
GAAAGAAAAGCTAGGCTTCA+AGG | 0.389193 | 5.1:-54084554 | MS.gene43757:intron |
GTCTTGGAACAAAGTTTGTT+GGG | 0.398781 | 5.1:-54081817 | MS.gene43757:CDS |
TTGGATGATGTTCTGGAGGT+TGG | 0.399642 | 5.1:+54084937 | None:intergenic |
AAACTCCAGGGACTCCAGTA+TGG | 0.400875 | 5.1:+54090895 | None:intergenic |
AGAAGGAAGTGTCATCTGAT+AGG | 0.401349 | 5.1:-54089983 | MS.gene43757:CDS |
CCATAACCAAGAGGGAATAA+GGG | 0.403111 | 5.1:+54081628 | None:intergenic |
GAATTTGATCGATTTCTCAT+TGG | 0.403602 | 5.1:-54093064 | MS.gene43757:CDS |
TTAGGCATACCAATCATCTA+TGG | 0.405292 | 5.1:-54089915 | MS.gene43757:CDS |
CATTCTACGAATTCTGTTGA+TGG | 0.407618 | 5.1:+54082003 | None:intergenic |
GCCAAGAGAATCCTTGTTGC+TGG | 0.408515 | 5.1:-54082388 | MS.gene43757:CDS |
ATCTGGAAGACCTTTGGTCT+TGG | 0.409437 | 5.1:-54081833 | MS.gene43757:CDS |
TTGACATCTCTAGTTCAATC+AGG | 0.411960 | 5.1:-54084206 | MS.gene43757:CDS |
CTCTTGGCGTTCTTATTCAA+TGG | 0.412762 | 5.1:+54082403 | None:intergenic |
GGGGCTACCCATTTGTGGCT+GGG | 0.413579 | 5.1:-54084914 | MS.gene43757:CDS |
GGCTTGGAGGGTTCAGATGC+TGG | 0.414264 | 5.1:-54090926 | MS.gene43757:CDS |
GGAACTCATGCTAATGATAT+CGG | 0.414525 | 5.1:-54082367 | MS.gene43757:CDS |
TGATCTATGCAATCCACATA+AGG | 0.414659 | 5.1:+54084661 | None:intergenic |
TCTGATATCTGGAAGACCTT+TGG | 0.421164 | 5.1:-54081839 | MS.gene43757:CDS |
TCCATCTCCAACAAAATGTT+TGG | 0.424518 | 5.1:+54084756 | None:intergenic |
TTATGTGGATTGCATAGATC+AGG | 0.428202 | 5.1:-54084659 | MS.gene43757:CDS |
GATCTATGCAATCCACATAA+GGG | 0.432262 | 5.1:+54084662 | None:intergenic |
CTTGTTGCGGCATGGTTGCC+AGG | 0.432789 | 5.1:-54081781 | MS.gene43757:CDS |
GGTCTTGGAACAAAGTTTGT+TGG | 0.434036 | 5.1:-54081818 | MS.gene43757:CDS |
TTCTTAATGCACAGGCTTGG+AGG | 0.435371 | 5.1:-54090939 | MS.gene43757:intron |
GTAATCCCATTTAATGGAGC+TGG | 0.440659 | 5.1:-54081904 | MS.gene43757:CDS |
TTTGGGGATCATGACTTAAA+GGG | 0.443996 | 5.1:-54081727 | MS.gene43757:CDS |
GATGACCCCTTATTCCCTCT+TGG | 0.445616 | 5.1:-54081634 | MS.gene43757:CDS |
CAATTCCAGCTCCATTAAAT+GGG | 0.447950 | 5.1:+54081899 | None:intergenic |
TATGGGACCGATGCTGTTCA+TGG | 0.450117 | 5.1:-54089897 | MS.gene43757:CDS |
AGATCTTTGCTGGATATTGT+TGG | 0.459020 | 5.1:-54084092 | MS.gene43757:CDS |
TGCTGGTCTAGCATCCATAC+TGG | 0.459286 | 5.1:-54090909 | MS.gene43757:CDS |
GGCCATCGGGTAGCAAGATC+CGG | 0.468423 | 5.1:-54091380 | MS.gene43757:CDS |
ACTCAAGTGCAGCTGAAACT+TGG | 0.468463 | 5.1:+54091324 | None:intergenic |
CTCTACGGCATCATCAATCC+TGG | 0.470143 | 5.1:+54084169 | None:intergenic |
GTATGCCTAACCGCGATTCA+AGG | 0.470531 | 5.1:+54089928 | None:intergenic |
TTCTTATTCAATGGTATGAA+AGG | 0.474409 | 5.1:+54082412 | None:intergenic |
GCTGAAACTTGGCATATTGA+TGG | 0.474510 | 5.1:+54091335 | None:intergenic |
GATCCACATGGCCCCTTATG+TGG | 0.475386 | 5.1:-54084674 | MS.gene43757:CDS |
TGAAGCAGTTCGAAAGTCCT+TGG | 0.476629 | 5.1:-54082467 | MS.gene43757:CDS |
CAGGCACTGCTTGAGGCCAT+CGG | 0.476989 | 5.1:-54091394 | MS.gene43757:intron |
ATTCCATTTCCTTCACTACC+TGG | 0.483897 | 5.1:+54081763 | None:intergenic |
TCCAAGGGGCTACCCATTTG+TGG | 0.486656 | 5.1:-54084919 | MS.gene43757:CDS |
TACTCTGCATGCTTATGGCC+AGG | 0.486830 | 5.1:-54093031 | MS.gene43757:intron |
TCTAGTGGCCAGATCACAAT+TGG | 0.486949 | 5.1:-54082307 | MS.gene43757:intron |
ATCTCATATTCCAGCTGGAA+TGG | 0.488467 | 5.1:-54084619 | MS.gene43757:CDS |
TCACCTCCACACTCAGCATA+GGG | 0.490280 | 5.1:+54081940 | None:intergenic |
GGTAGACGAGTTTCTGAAGT+TGG | 0.495981 | 5.1:-54089952 | MS.gene43757:CDS |
GCCACAAATGGGTAGCCCCT+TGG | 0.496947 | 5.1:+54084918 | None:intergenic |
TCCAGCAACAAGGATTCTCT+TGG | 0.497425 | 5.1:+54082387 | None:intergenic |
TTGGCCCTTGAATCGCGGTT+AGG | 0.501190 | 5.1:-54089933 | MS.gene43757:CDS |
GGTAGCAAGATCCGGTGCTC+AGG | 0.501786 | 5.1:-54091372 | MS.gene43757:CDS |
GATATCAGAATCACAAGTGT+AGG | 0.502063 | 5.1:+54081853 | None:intergenic |
AGGCACTGCTTGAGGCCATC+GGG | 0.506468 | 5.1:-54091393 | MS.gene43757:intron |
ATTCTACGAATTCTGTTGAT+GGG | 0.507027 | 5.1:+54082004 | None:intergenic |
CAGGGGAAGTACCAATATCC+AGG | 0.507801 | 5.1:-54084187 | MS.gene43757:CDS |
AGCATCCATACTGGAGTCCC+TGG | 0.508504 | 5.1:-54090900 | MS.gene43757:CDS |
AAGGCTAACCAATTGTGATC+TGG | 0.508578 | 5.1:+54082299 | None:intergenic |
GCATCGGTCCCATAGATGAT+TGG | 0.509073 | 5.1:+54089906 | None:intergenic |
GGAACAAAGTTTGTTGGGAA+AGG | 0.509615 | 5.1:-54081812 | MS.gene43757:CDS |
ATATCTACTTCCATTAATGC+TGG | 0.513950 | 5.1:-54084359 | MS.gene43757:CDS |
TAACGATAATCTGAACCATA+AGG | 0.514827 | 5.1:+54084386 | None:intergenic |
TTATGATCTCATATTCCAGC+TGG | 0.516652 | 5.1:-54084624 | MS.gene43757:CDS |
CCTACCTCCCAGCCACAAAT+GGG | 0.519639 | 5.1:+54084907 | None:intergenic |
GAGTTTGACTCCATTCCAGC+TGG | 0.521515 | 5.1:+54084609 | None:intergenic |
TCACTTGAACTTAGAGCAAG+TGG | 0.523247 | 5.1:-54085961 | MS.gene43757:CDS |
TTGCCAGGTAGTGAAGGAAA+TGG | 0.526282 | 5.1:-54081766 | MS.gene43757:CDS |
CTTTACTTGTGCTCCTTGTG+TGG | 0.531448 | 5.1:-54085932 | MS.gene43757:CDS |
CATGAATTCACTCCCTCACT+AGG | 0.533097 | 5.1:+54081658 | None:intergenic |
TTTGTGATTTCTGACTGGGA+GGG | 0.536472 | 5.1:-54084428 | MS.gene43757:CDS |
GCTGGATATTGTTGGTTGCA+AGG | 0.536491 | 5.1:-54084084 | MS.gene43757:intron |
AGGGTAAACTACCAATGACT+TGG | 0.537862 | 5.1:-54081708 | MS.gene43757:CDS |
CACTCTTAAGATCCGCTCTA+CGG | 0.540073 | 5.1:+54084154 | None:intergenic |
TCTTAATGCACAGGCTTGGA+GGG | 0.540578 | 5.1:-54090938 | MS.gene43757:intron |
AAAATGTTTGGCACAAGCAA+TGG | 0.544098 | 5.1:+54084768 | None:intergenic |
GAAGGAAGTGTCATCTGATA+GGG | 0.544276 | 5.1:-54089982 | MS.gene43757:CDS |
TTGAGTTCAAGCAAAACTCC+AGG | 0.546107 | 5.1:+54090882 | None:intergenic |
TCATAGCATCTTCCCCATCT+GGG | 0.547812 | 5.1:+54085023 | None:intergenic |
TCTTATGTTTCAGGTTTGCA+AGG | 0.550837 | 5.1:-54084960 | MS.gene43757:CDS |
TTTCCTCACAATGTTGCCCT+CGG | 0.551883 | 5.1:-54089846 | MS.gene43757:CDS |
GATGCTGTTAAGGAAGCTGT+TGG | 0.555334 | 5.1:-54082057 | MS.gene43757:CDS |
TATGCCTAACCGCGATTCAA+GGG | 0.555443 | 5.1:+54089929 | None:intergenic |
GCTGCACTTGAGTATACTGC+TGG | 0.556404 | 5.1:-54091314 | MS.gene43757:CDS |
TCGGATATCAATGTGGAGGA+TGG | 0.557414 | 5.1:-54082348 | MS.gene43757:CDS |
CATTAATGCTGGAATTGACA+TGG | 0.559007 | 5.1:-54084348 | MS.gene43757:intron |
CACCGGATCTTGCTACCCGA+TGG | 0.562084 | 5.1:+54091378 | None:intergenic |
TAGAAGCTCTTGTTGCGGCA+TGG | 0.570732 | 5.1:-54081789 | MS.gene43757:CDS |
TGACATCTCTAGTTCAATCA+GGG | 0.573784 | 5.1:-54084205 | MS.gene43757:CDS |
AATGGTATGAAAGGTTTACC+AGG | 0.573901 | 5.1:+54082421 | None:intergenic |
AGGTCTGCAAAGATCCCAGA+TGG | 0.575622 | 5.1:-54085037 | MS.gene43757:CDS |
GGCTTCACCAATAGCAACAA+TGG | 0.575663 | 5.1:+54081963 | None:intergenic |
CCCCTTGGATGATGTTCTGG+AGG | 0.577266 | 5.1:+54084933 | None:intergenic |
ATATCAGAATCACAAGTGTA+GGG | 0.579775 | 5.1:+54081854 | None:intergenic |
GCTACCCATTTGTGGCTGGG+AGG | 0.583997 | 5.1:-54084911 | MS.gene43757:intron |
AACCTCCAGAACATCATCCA+AGG | 0.585290 | 5.1:-54084935 | MS.gene43757:CDS |
TGCCGACGAATCCTGAGCAC+CGG | 0.585378 | 5.1:+54091361 | None:intergenic |
ATCCGGTGCTCAGGATTCGT+CGG | 0.586775 | 5.1:-54091363 | MS.gene43757:CDS |
ATTATTACCATGAACAGCAT+CGG | 0.588155 | 5.1:+54089890 | None:intergenic |
TTATCAGAAAATGGTGACCA+TGG | 0.590460 | 5.1:+54084587 | None:intergenic |
GTCACCTCCACACTCAGCAT+AGG | 0.590732 | 5.1:+54081939 | None:intergenic |
TAGGCATACCAATCATCTAT+GGG | 0.592976 | 5.1:-54089914 | MS.gene43757:CDS |
GCATGGTTGCCAGGTAGTGA+AGG | 0.595439 | 5.1:-54081772 | MS.gene43757:CDS |
TTTACTAAGTATGGATCTAG+TGG | 0.597699 | 5.1:-54082322 | MS.gene43757:CDS |
CACCAACCTTGTAGCTCCGA+GGG | 0.601062 | 5.1:+54089830 | None:intergenic |
ACCTCCAGAACATCATCCAA+GGG | 0.602790 | 5.1:-54084934 | MS.gene43757:CDS |
ACCTCCACACTCAGCATAGG+GGG | 0.603901 | 5.1:+54081942 | None:intergenic |
AAACTTTGTTCCAAGACCAA+AGG | 0.605055 | 5.1:+54081823 | None:intergenic |
TAGCATGAGTTCCAGCAACA+AGG | 0.605520 | 5.1:+54082377 | None:intergenic |
ATCTATGCAATCCACATAAG+GGG | 0.605915 | 5.1:+54084663 | None:intergenic |
TATATTATCATATCAAGACT+TGG | 0.606963 | 5.1:-54084701 | MS.gene43757:CDS |
GCTCCGAGGGCAACATTGTG+AGG | 0.608447 | 5.1:+54089843 | None:intergenic |
TGGAATGGAGTCAAACTCCA+TGG | 0.613942 | 5.1:-54084604 | MS.gene43757:CDS |
TAATTAGTACTTCAGGAACA+AGG | 0.614183 | 5.1:-54084791 | MS.gene43757:intron |
AATCACAGATGTTATCTTTG+GGG | 0.616261 | 5.1:-54081743 | MS.gene43757:CDS |
CGATGCCTTACAGCCACACA+AGG | 0.616991 | 5.1:+54085919 | None:intergenic |
TGAAGTTGGCCCTTGAATCG+CGG | 0.622709 | 5.1:-54089938 | MS.gene43757:CDS |
CATAACCAAGAGGGAATAAG+GGG | 0.624050 | 5.1:+54081629 | None:intergenic |
ACAGCTTGATCAACCTAGTG+AGG | 0.624717 | 5.1:-54081671 | MS.gene43757:CDS |
TATGTGGATTGCATAGATCA+GGG | 0.629131 | 5.1:-54084658 | MS.gene43757:CDS |
ATGTTGCCCTCGGAGCTACA+AGG | 0.632503 | 5.1:-54089836 | MS.gene43757:intron |
TATCATATCAAGACTTGGAG+AGG | 0.635186 | 5.1:-54084696 | MS.gene43757:CDS |
AAGCTAGCCCATAACCAAGA+GGG | 0.637396 | 5.1:+54081620 | None:intergenic |
GGTCTGCAAAGATCCCAGAT+GGG | 0.639985 | 5.1:-54085036 | MS.gene43757:CDS |
CAGCTTGATCAACCTAGTGA+GGG | 0.640848 | 5.1:-54081670 | MS.gene43757:CDS |
TGAGTTCAAGCAAAACTCCA+GGG | 0.647245 | 5.1:+54090883 | None:intergenic |
CACCTCCACACTCAGCATAG+GGG | 0.652884 | 5.1:+54081941 | None:intergenic |
GTCTGCAAAGATCCCAGATG+GGG | 0.656027 | 5.1:-54085035 | MS.gene43757:CDS |
CCACCAACCTTGTAGCTCCG+AGG | 0.662538 | 5.1:+54089829 | None:intergenic |
GACATCTCTAGTTCAATCAG+GGG | 0.662760 | 5.1:-54084204 | MS.gene43757:CDS |
GGATTGATGATGCCGTAGAG+CGG | 0.670287 | 5.1:-54084166 | MS.gene43757:CDS |
GATATCGGATATCAATGTGG+AGG | 0.679895 | 5.1:-54082352 | MS.gene43757:CDS |
AATGATATCGGATATCAATG+TGG | 0.685743 | 5.1:-54082355 | MS.gene43757:CDS |
GCACTTGAGTATACTGCTGG+TGG | 0.691293 | 5.1:-54091311 | MS.gene43757:intron |
TAAGCTAGCCCATAACCAAG+AGG | 0.693183 | 5.1:+54081619 | None:intergenic |
AAAGGTAGAAGCTCTTGTTG+CGG | 0.703551 | 5.1:-54081794 | MS.gene43757:CDS |
AATCCACATAAGGGGCCATG+TGG | 0.706935 | 5.1:+54084671 | None:intergenic |
AGACTTGGAGAGGATCCACA+TGG | 0.730403 | 5.1:-54084686 | MS.gene43757:CDS |
CCTCCAGAACATCATCCAAG+GGG | 0.732071 | 5.1:-54084933 | MS.gene43757:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 54081594 | 54093205 | 54081594 | ID=MS.gene43757 |
chr5.1 | mRNA | 54081594 | 54093205 | 54081594 | ID=MS.gene43757.t1;Parent=MS.gene43757 |
chr5.1 | exon | 54093200 | 54093205 | 54093200 | ID=MS.gene43757.t1.exon1;Parent=MS.gene43757.t1 |
chr5.1 | CDS | 54093200 | 54093205 | 54093200 | ID=cds.MS.gene43757.t1;Parent=MS.gene43757.t1 |
chr5.1 | exon | 54093032 | 54093110 | 54093032 | ID=MS.gene43757.t1.exon2;Parent=MS.gene43757.t1 |
chr5.1 | CDS | 54093032 | 54093110 | 54093032 | ID=cds.MS.gene43757.t1;Parent=MS.gene43757.t1 |
chr5.1 | exon | 54091312 | 54091401 | 54091312 | ID=MS.gene43757.t1.exon3;Parent=MS.gene43757.t1 |
chr5.1 | CDS | 54091312 | 54091401 | 54091312 | ID=cds.MS.gene43757.t1;Parent=MS.gene43757.t1 |
chr5.1 | exon | 54090875 | 54090947 | 54090875 | ID=MS.gene43757.t1.exon4;Parent=MS.gene43757.t1 |
chr5.1 | CDS | 54090875 | 54090947 | 54090875 | ID=cds.MS.gene43757.t1;Parent=MS.gene43757.t1 |
chr5.1 | exon | 54089837 | 54090061 | 54089837 | ID=MS.gene43757.t1.exon5;Parent=MS.gene43757.t1 |
chr5.1 | CDS | 54089837 | 54090061 | 54089837 | ID=cds.MS.gene43757.t1;Parent=MS.gene43757.t1 |
chr5.1 | exon | 54085930 | 54086020 | 54085930 | ID=MS.gene43757.t1.exon6;Parent=MS.gene43757.t1 |
chr5.1 | CDS | 54085930 | 54086020 | 54085930 | ID=cds.MS.gene43757.t1;Parent=MS.gene43757.t1 |
chr5.1 | exon | 54084912 | 54085057 | 54084912 | ID=MS.gene43757.t1.exon7;Parent=MS.gene43757.t1 |
chr5.1 | CDS | 54084912 | 54085057 | 54084912 | ID=cds.MS.gene43757.t1;Parent=MS.gene43757.t1 |
chr5.1 | exon | 54084555 | 54084798 | 54084555 | ID=MS.gene43757.t1.exon8;Parent=MS.gene43757.t1 |
chr5.1 | CDS | 54084555 | 54084798 | 54084555 | ID=cds.MS.gene43757.t1;Parent=MS.gene43757.t1 |
chr5.1 | exon | 54084349 | 54084453 | 54084349 | ID=MS.gene43757.t1.exon9;Parent=MS.gene43757.t1 |
chr5.1 | CDS | 54084349 | 54084453 | 54084349 | ID=cds.MS.gene43757.t1;Parent=MS.gene43757.t1 |
chr5.1 | exon | 54084085 | 54084267 | 54084085 | ID=MS.gene43757.t1.exon10;Parent=MS.gene43757.t1 |
chr5.1 | CDS | 54084085 | 54084267 | 54084085 | ID=cds.MS.gene43757.t1;Parent=MS.gene43757.t1 |
chr5.1 | exon | 54082308 | 54082509 | 54082308 | ID=MS.gene43757.t1.exon11;Parent=MS.gene43757.t1 |
chr5.1 | CDS | 54082308 | 54082509 | 54082308 | ID=cds.MS.gene43757.t1;Parent=MS.gene43757.t1 |
chr5.1 | exon | 54081594 | 54082093 | 54081594 | ID=MS.gene43757.t1.exon12;Parent=MS.gene43757.t1 |
chr5.1 | CDS | 54081594 | 54082093 | 54081594 | ID=cds.MS.gene43757.t1;Parent=MS.gene43757.t1 |
Gene Sequence |
Protein sequence |