AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056590.t1 MTR_4g066460 81.620 321 28 6 1 308 1 303 1.14e-175 489
MS.gene056590.t1 MTR_4g066380 82.390 318 28 4 1 308 1 300 5.04e-175 487
MS.gene056590.t1 MTR_4g067010 78.438 320 32 6 1 308 1 295 7.28e-172 479
MS.gene056590.t1 MTR_6g047570 63.720 328 81 10 1 308 1 310 3.03e-128 369
MS.gene056590.t1 MTR_0011s0260 59.026 349 87 7 1 308 1 334 1.70e-117 342
MS.gene056590.t1 MTR_0011s0210 58.739 349 88 7 1 308 1 334 8.93e-116 338
MS.gene056590.t1 MTR_0250s0040 55.219 297 64 7 23 308 1 239 2.61e-96 285
MS.gene056590.t1 MTR_0246s0020 50.418 359 121 8 1 308 1 353 3.90e-90 274
MS.gene056590.t1 MTR_0246s0020 50.418 359 121 8 1 308 1 353 6.12e-90 273
MS.gene056590.t1 MTR_6g047550 57.317 246 63 8 1 222 1 228 5.98e-74 228
MS.gene056590.t1 MTR_4g098035 45.161 341 129 11 1 308 1 316 8.96e-73 228
MS.gene056590.t1 MTR_0246s0050 43.887 319 122 10 22 308 2 295 3.59e-65 207
MS.gene056590.t1 MTR_5g014520 43.648 307 140 10 17 308 20 308 9.28e-56 184
MS.gene056590.t1 MTR_5g014560 46.377 207 83 7 117 308 89 282 4.95e-42 147
MS.gene056590.t1 MTR_5g014600 34.954 329 159 9 13 308 7 313 1.46e-37 136
MS.gene056590.t1 MTR_4g097920 36.626 243 122 6 93 308 52 289 7.35e-36 131
MS.gene056590.t1 MTR_4g097920 36.626 243 122 6 93 308 67 304 1.13e-35 131
MS.gene056590.t1 MTR_8g009020 38.009 221 112 4 105 308 89 301 4.13e-35 130
MS.gene056590.t1 MTR_4g097940 35.802 243 124 6 93 308 67 304 6.84e-34 126
MS.gene056590.t1 MTR_2g010450 45.342 161 75 2 159 308 171 329 9.88e-34 127
MS.gene056590.t1 MTR_4g092700 41.304 184 86 3 141 308 132 309 1.26e-33 126
MS.gene056590.t1 MTR_4g009540 41.209 182 86 6 148 308 128 309 3.26e-33 124
MS.gene056590.t1 MTR_2g104490 35.417 240 135 5 78 308 58 286 6.48e-33 124
MS.gene056590.t1 MTR_2g104490 36.100 241 132 7 78 308 58 286 7.04e-33 123
MS.gene056590.t1 MTR_4g009540 41.209 182 86 6 148 308 128 309 7.22e-33 124
MS.gene056590.t1 MTR_8g069740 42.690 171 82 5 153 308 96 265 8.30e-33 122
MS.gene056590.t1 MTR_4g097950 47.531 162 68 4 164 308 67 228 1.15e-32 121
MS.gene056590.t1 MTR_5g014640 32.422 256 127 6 81 308 65 302 1.93e-32 122
MS.gene056590.t1 MTR_4g009110 36.638 232 111 7 98 308 112 328 2.69e-32 122
MS.gene056590.t1 MTR_2g104550 37.037 216 117 4 105 308 82 290 2.69e-32 122
MS.gene056590.t1 MTR_8g009010 36.098 205 99 3 105 308 77 250 7.41e-30 115
MS.gene056590.t1 MTR_2g104650 42.857 168 80 5 156 308 81 247 1.03e-28 111
MS.gene056590.t1 MTR_7g080780 39.247 186 105 4 126 308 127 307 1.29e-28 112
MS.gene056590.t1 MTR_7g080780 39.247 186 105 4 126 308 114 294 1.32e-28 112
MS.gene056590.t1 MTR_2g104560 38.323 167 91 5 153 308 38 203 1.61e-26 104
MS.gene056590.t1 MTR_2g104530 37.805 164 92 4 153 308 91 252 5.78e-24 99.0
MS.gene056590.t1 MTR_2g104500 31.222 221 144 5 95 308 31 250 4.16e-21 91.3
MS.gene056590.t1 MTR_2g104590 36.145 166 72 6 156 308 58 202 4.55e-20 87.4
MS.gene056590.t1 MTR_5g014550 44.444 126 52 3 197 308 54 175 8.38e-20 85.9
MS.gene056590.t1 MTR_4g009510 35.664 143 85 5 169 308 45 183 9.62e-17 77.8
MS.gene056590.t1 MTR_8g067280 29.940 167 86 2 158 293 443 609 1.30e-15 77.8
MS.gene056590.t1 MTR_7g451650 36.000 125 68 2 190 308 57 175 1.89e-15 73.6
MS.gene056590.t1 MTR_7g451650 36.000 125 68 2 190 308 57 175 1.95e-15 73.9
MS.gene056590.t1 MTR_1g072320 31.944 144 76 3 167 290 470 611 5.12e-15 75.9
MS.gene056590.t1 MTR_4g009420 37.815 119 66 2 190 308 65 175 1.22e-14 71.6
MS.gene056590.t1 MTR_4g009420 37.815 119 66 2 190 308 65 175 2.02e-14 71.2
MS.gene056590.t1 MTR_8g024770 29.333 150 77 4 141 266 248 392 3.79e-14 72.8
MS.gene056590.t1 MTR_8g024790 29.630 162 99 4 139 286 263 423 7.25e-14 72.0
MS.gene056590.t1 MTR_5g030430 30.539 167 91 4 152 293 474 640 9.61e-14 72.0
MS.gene056590.t1 MTR_7g050350 34.454 119 66 2 196 308 1 113 3.06e-13 66.2
MS.gene056590.t1 MTR_7g451650 34.454 119 66 2 196 308 1 113 3.06e-13 66.2
MS.gene056590.t1 MTR_7g117670 53.226 62 25 1 163 220 394 455 7.74e-13 69.3
MS.gene056590.t1 MTR_3g498695 29.677 155 89 2 169 303 300 454 1.14e-12 68.6
MS.gene056590.t1 MTR_3g498695 29.677 155 89 2 169 303 300 454 1.25e-12 68.6
MS.gene056590.t1 MTR_3g030700 30.968 155 92 3 169 308 198 352 2.10e-12 67.4
MS.gene056590.t1 MTR_7g096350 36.082 97 52 1 134 220 312 408 3.10e-12 67.4
MS.gene056590.t1 MTR_8g027495 46.479 71 38 0 167 237 458 528 3.24e-12 67.4
MS.gene056590.t1 MTR_8g064700 26.036 169 102 4 157 306 234 398 5.53e-12 66.2
MS.gene056590.t1 MTR_3g104100 27.742 155 92 3 169 303 197 351 3.51e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056590.t1 AT4G37850 43.889 180 80 7 147 308 128 304 3.34e-33 125
MS.gene056590.t1 AT4G37850 43.889 180 80 7 147 308 128 304 3.34e-33 125
MS.gene056590.t1 AT2G22750 33.631 336 158 14 8 308 4 309 2.12e-30 117
MS.gene056590.t1 AT2G22750 33.631 336 158 14 8 308 4 309 2.35e-30 117
MS.gene056590.t1 AT2G22750 33.131 329 156 13 15 308 6 305 6.45e-30 116
MS.gene056590.t1 AT2G22760 38.554 166 89 3 156 308 108 273 1.29e-29 114
MS.gene056590.t1 AT2G22760 38.554 166 89 3 156 308 108 273 1.96e-29 114
MS.gene056590.t1 AT2G22750 37.788 217 97 6 125 308 70 281 2.22e-29 114
MS.gene056590.t1 AT2G22750 37.788 217 97 6 125 308 70 281 2.24e-29 114
MS.gene056590.t1 AT2G22770 38.095 168 79 2 166 308 131 298 3.12e-25 103
MS.gene056590.t1 AT4G17880 33.175 211 109 8 110 291 350 557 1.31e-17 83.6
MS.gene056590.t1 AT5G46760 35.329 167 79 7 152 291 396 560 2.37e-17 82.8
MS.gene056590.t1 AT1G32640 32.075 159 81 3 159 293 434 589 8.40e-16 78.2
MS.gene056590.t1 AT2G46510 37.931 116 54 3 159 264 377 484 8.48e-15 75.1
MS.gene056590.t1 AT1G01260 25.974 231 135 5 91 306 351 560 1.81e-13 71.2
MS.gene056590.t1 AT1G01260 25.974 231 135 5 91 306 351 560 1.81e-13 71.2
MS.gene056590.t1 AT1G01260 25.974 231 135 5 91 306 351 560 1.81e-13 71.2
MS.gene056590.t1 AT4G09820 29.193 161 97 3 118 278 321 464 4.48e-13 69.7
MS.gene056590.t1 AT4G16430 46.575 73 35 1 152 220 301 373 1.01e-12 68.6
MS.gene056590.t1 AT5G46830 54.839 62 24 1 163 220 335 396 3.50e-12 67.0
MS.gene056590.t1 AT5G41315 29.348 184 90 7 158 305 437 616 7.20e-12 66.2
MS.gene056590.t1 AT5G41315 29.348 184 90 7 158 305 440 619 7.76e-12 66.2
MS.gene056590.t1 AT5G41315 29.348 184 90 7 158 305 432 611 8.16e-12 66.2
MS.gene056590.t1 AT3G26744 29.487 156 90 2 168 303 308 463 7.37e-11 63.2
MS.gene056590.t1 AT3G26744 29.487 156 90 2 168 303 308 463 9.06e-11 62.8
MS.gene056590.t1 AT3G26744 29.487 156 90 2 168 303 308 463 9.06e-11 62.8
MS.gene056590.t1 AT3G26744 29.487 156 90 2 168 303 308 463 9.06e-11 62.8

Find 47 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGTTCCTAACCTTAAAA+AGG 0.267726 4.2:+39208218 MS.gene056590:CDS
CAGCAGCTGGTTATCTGATT+TGG 0.268145 4.2:+39207364 MS.gene056590:CDS
TCAAGAACAAAACAAACAAT+TGG 0.334442 4.2:+39207816 MS.gene056590:CDS
CAAGTGGAAGCAAGAGTGTT+AGG 0.334987 4.2:+39209033 MS.gene056590:CDS
GGGGCTTCTAGTTAAAATTA+TGG 0.343764 4.2:+39209095 MS.gene056590:CDS
GATGGTGATGGAGAAATATT+TGG 0.350142 4.2:-39207922 None:intergenic
CTGCAAGAGCAATGAAGCTT+TGG 0.357341 4.2:-39208194 None:intergenic
ATCAGTGTCTCCAACCGAAT+TGG 0.364748 4.2:+39208029 MS.gene056590:CDS
CAAGAACAAAACAAACAATT+GGG 0.390107 4.2:+39207817 MS.gene056590:CDS
CATCTGCATCAAGAAAATTA+AGG 0.394973 4.2:-39207756 None:intergenic
TTGATGATACTTTCATTGCT+TGG 0.395476 4.2:-39207340 None:intergenic
ATCGCTGCATATGCATGGTT+TGG 0.407010 4.2:-39208956 None:intergenic
ACTCTTGCTTCCACTTGAAA+TGG 0.409697 4.2:-39209027 None:intergenic
AGAAACCTCAAAAGGGTCAT+TGG 0.411401 4.2:+39208071 MS.gene056590:CDS
AATAACAGTGTCTTACCCTT+TGG 0.416567 4.2:+39209150 MS.gene056590:CDS
GCCCCTTGTGCTCCTTGCAT+TGG 0.417499 4.2:-39209077 None:intergenic
CACTCAACAGAAACCTCAAA+AGG 0.444007 4.2:+39208063 MS.gene056590:CDS
TAGGAAAACAAGTGTTGATT+CGG 0.449123 4.2:+39209052 MS.gene056590:CDS
TGCAAGAGCAATGAAGCTTT+GGG 0.460124 4.2:-39208193 None:intergenic
AAAGAGGAGTTAGATGGTGA+TGG 0.464747 4.2:-39207934 None:intergenic
GATAACATTGAATGTGTTGT+TGG 0.466089 4.2:+39209000 MS.gene056590:CDS
TGACTTGCTGAGATCATTTG+TGG 0.473303 4.2:-39207848 None:intergenic
AACTGAAAAGAGGAGTTAGA+TGG 0.496291 4.2:-39207940 None:intergenic
GCTGAGATCATTTGTGGAAG+TGG 0.497595 4.2:-39207842 None:intergenic
AGCAAAAGGCCTCGTGCTCA+TGG 0.502148 4.2:+39208126 MS.gene056590:CDS
GGTAGCTACCTGAGCAATGA+TGG 0.511294 4.2:-39209193 None:intergenic
AAGGCCTCGTGCTCATGGTA+AGG 0.535577 4.2:+39208131 MS.gene056590:CDS
TTCTTGATGCAGATGTGGGA+GGG 0.544131 4.2:+39207764 MS.gene056590:CDS
CGACATTACCATCATTGCTC+AGG 0.544333 4.2:+39209185 MS.gene056590:CDS
GTTGATTCGGTTCCAATGCA+AGG 0.545125 4.2:+39209065 MS.gene056590:CDS
GTTCCAATGCAAGGAGCACA+AGG 0.563766 4.2:+39209074 MS.gene056590:CDS
TCTTCATCGCTGCATATGCA+TGG 0.570607 4.2:-39208961 None:intergenic
AAGTATCATCAATCAGCAGC+TGG 0.573007 4.2:+39207351 MS.gene056590:CDS
TTTCTTGATGCAGATGTGGG+AGG 0.583981 4.2:+39207763 MS.gene056590:CDS
TGGTATTTGAAACTGAAAAG+AGG 0.585974 4.2:-39207950 None:intergenic
ACTCAACAGAAACCTCAAAA+GGG 0.587077 4.2:+39208064 MS.gene056590:CDS
GTCGAGTGTAGAATCTCCAA+AGG 0.590011 4.2:-39209166 None:intergenic
TCCAATGCAAGGAGCACAAG+GGG 0.595381 4.2:+39209076 MS.gene056590:CDS
TGTTGGTTCACCATTTCAAG+TGG 0.611743 4.2:+39209017 MS.gene056590:CDS
TCATGGTAAGGATCACATCA+TGG 0.611981 4.2:+39208143 MS.gene056590:CDS
TCGAGTGTAGAATCTCCAAA+GGG 0.615421 4.2:-39209165 None:intergenic
CTGCATATGCATGGTTTGGT+CGG 0.617639 4.2:-39208952 None:intergenic
CGAATACAATATATTTGCTG+AGG 0.624364 4.2:+39207726 MS.gene056590:CDS
TGAAGATTCGTCATCATGTG+AGG 0.642706 4.2:+39208978 MS.gene056590:CDS
TTCCAATGCAAGGAGCACAA+GGG 0.644827 4.2:+39209075 MS.gene056590:CDS
AAGAACAAAACAAACAATTG+GGG 0.650416 4.2:+39207818 MS.gene056590:CDS
TGATCCTTACCATGAGCACG+AGG 0.705697 4.2:-39208135 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTATATTTTGAAATATTT+AGG + chr4.2:39208404-39208423 MS.gene056590:intron 10.0%
!!! TTTATTATTTTTCTTTTAGA+TGG + chr4.2:39208849-39208868 MS.gene056590:intron 10.0%
!! AAAAAAAAATCTTGAAGACT+TGG - chr4.2:39207598-39207617 None:intergenic 20.0%
!! ATACTTTGATCATATGTAAA+GGG - chr4.2:39208463-39208482 None:intergenic 20.0%
!! ATTTGACATATAATTATGAG+CGG + chr4.2:39208748-39208767 MS.gene056590:intron 20.0%
!! CCTTAAATAAGAATAAACAT+AGG + chr4.2:39207553-39207572 MS.gene056590:intron 20.0%
!! TATACATGACATATATGAAT+TGG - chr4.2:39208333-39208352 None:intergenic 20.0%
!! TGTATATTGTTTGTGTATAT+AGG - chr4.2:39208682-39208701 None:intergenic 20.0%
!!! CCTATGTTTATTCTTATTTA+AGG - chr4.2:39207556-39207575 None:intergenic 20.0%
!!! CTTACATTTAACTTAATCAA+TGG - chr4.2:39207468-39207487 None:intergenic 20.0%
!!! GAACTTTTATTTTTTTTTGC+AGG + chr4.2:39207696-39207715 MS.gene056590:intron 20.0%
!!! GTTTATTCTTATTTAAGGTT+AGG - chr4.2:39207551-39207570 None:intergenic 20.0%
!!! TTACATAACATACCTTTTTA+AGG - chr4.2:39208233-39208252 None:intergenic 20.0%
!!! TTATTTTTTTTTGCAGGAAA+TGG + chr4.2:39207702-39207721 MS.gene056590:intron 20.0%
!!! TTTTTTCAGACAATAATTGA+TGG + chr4.2:39207616-39207635 MS.gene056590:intron 20.0%
! AAGAACAAAACAAACAATTG+GGG + chr4.2:39207818-39207837 MS.gene056590:CDS 25.0%
! CAAGAACAAAACAAACAATT+GGG + chr4.2:39207817-39207836 MS.gene056590:CDS 25.0%
! CACAAAAGTTGTCAAAAAAA+TGG - chr4.2:39208517-39208536 None:intergenic 25.0%
! CATACTTTGATCATATGTAA+AGG - chr4.2:39208464-39208483 None:intergenic 25.0%
! TAAAATTTGCACAAAAACCA+AGG - chr4.2:39208591-39208610 None:intergenic 25.0%
! TAATCAACCATCTTTGAATT+TGG - chr4.2:39207429-39207448 None:intergenic 25.0%
! TATATTATTTGTCTCAACGT+TGG + chr4.2:39207643-39207662 MS.gene056590:intron 25.0%
! TCAAGAACAAAACAAACAAT+TGG + chr4.2:39207816-39207835 MS.gene056590:CDS 25.0%
!! ATTCTAAGAGTTAGCTAATA+GGG - chr4.2:39208266-39208285 None:intergenic 25.0%
!! GATTTGGTAAGAAAATCAAA+AGG + chr4.2:39207380-39207399 MS.gene056590:intron 25.0%
!! GTGATTCATATTTTCCAATT+CGG - chr4.2:39208046-39208065 None:intergenic 25.0%
!!! ATGCTATTTTACTCAATCAT+AGG + chr4.2:39207509-39207528 MS.gene056590:intron 25.0%
!!! GTGTTATTTGAACAACTATT+TGG - chr4.2:39208658-39208677 None:intergenic 25.0%
!!! TAACATACCTTTTTAAGGTT+AGG - chr4.2:39208228-39208247 None:intergenic 25.0%
CATCTGCATCAAGAAAATTA+AGG - chr4.2:39207759-39207778 None:intergenic 30.0%
GATAACATTGAATGTGTTGT+TGG + chr4.2:39209000-39209019 MS.gene056590:CDS 30.0%
TAGGTCTCAAATAGATTTGT+AGG + chr4.2:39207572-39207591 MS.gene056590:intron 30.0%
TCTTGTTCCTAACCTTAAAA+AGG + chr4.2:39208218-39208237 MS.gene056590:CDS 30.0%
! AATTTTCTTGATGCAGATGT+GGG + chr4.2:39207760-39207779 MS.gene056590:CDS 30.0%
! CGAATACAATATATTTGCTG+AGG + chr4.2:39207726-39207745 MS.gene056590:CDS 30.0%
! GATTCTAAGAGTTAGCTAAT+AGG - chr4.2:39208267-39208286 None:intergenic 30.0%
! TAATTTTCTTGATGCAGATG+TGG + chr4.2:39207759-39207778 MS.gene056590:CDS 30.0%
! TGGTATTTGAAACTGAAAAG+AGG - chr4.2:39207953-39207972 None:intergenic 30.0%
! TTCATATTTTCCAATTCGGT+TGG - chr4.2:39208042-39208061 None:intergenic 30.0%
! TTGATGATACTTTCATTGCT+TGG - chr4.2:39207343-39207362 None:intergenic 30.0%
!! TAGGAAAACAAGTGTTGATT+CGG + chr4.2:39209052-39209071 MS.gene056590:CDS 30.0%
!!! ATTCTCTTTTGAGTTACTAG+GGG - chr4.2:39208001-39208020 None:intergenic 30.0%
!!! CATTCTCTTTTGAGTTACTA+GGG - chr4.2:39208002-39208021 None:intergenic 30.0%
!!! TCATTCTCTTTTGAGTTACT+AGG - chr4.2:39208003-39208022 None:intergenic 30.0%
!!! TTTTTTCCACAACTTCCAAT+CGG - chr4.2:39208927-39208946 None:intergenic 30.0%
AACTGAAAAGAGGAGTTAGA+TGG - chr4.2:39207943-39207962 None:intergenic 35.0%
AATAACAGTGTCTTACCCTT+TGG + chr4.2:39209150-39209169 MS.gene056590:CDS 35.0%
ACTCAACAGAAACCTCAAAA+GGG + chr4.2:39208064-39208083 MS.gene056590:CDS 35.0%
ACTTTACCTCTTTATTGCCT+TGG + chr4.2:39208571-39208590 MS.gene056590:intron 35.0%
CAAAAACCAAGGCAATAAAG+AGG - chr4.2:39208580-39208599 None:intergenic 35.0%
CATCTTTGAATTTGGAAAGC+AGG - chr4.2:39207421-39207440 None:intergenic 35.0%
CCAAAACCTCAAAAAGCAAA+AGG + chr4.2:39208112-39208131 MS.gene056590:CDS 35.0%
CTGCTTTCCAAATTCAAAGA+TGG + chr4.2:39207419-39207438 MS.gene056590:intron 35.0%
GAAAGAGCTTAAAAACCGAT+TGG + chr4.2:39208909-39208928 MS.gene056590:CDS 35.0%
TAAAAACCGATTGGAAGTTG+TGG + chr4.2:39208918-39208937 MS.gene056590:CDS 35.0%
TACTCAATCATAGGTCTCAA+GGG + chr4.2:39207518-39207537 MS.gene056590:intron 35.0%
TTACTCAATCATAGGTCTCA+AGG + chr4.2:39207517-39207536 MS.gene056590:intron 35.0%
TTGAATTTGGAAAGCAGGAA+AGG - chr4.2:39207416-39207435 None:intergenic 35.0%
! ATTTTCCAATGACCCTTTTG+AGG - chr4.2:39208079-39208098 None:intergenic 35.0%
! GGGGCTTCTAGTTAAAATTA+TGG + chr4.2:39209095-39209114 MS.gene056590:CDS 35.0%
!! GATGGTGATGGAGAAATATT+TGG - chr4.2:39207925-39207944 None:intergenic 35.0%
!!! CCTTTTGCTTTTTGAGGTTT+TGG - chr4.2:39208115-39208134 None:intergenic 35.0%
!!! TTCTCTTTTGAGTTACTAGG+GGG - chr4.2:39208000-39208019 None:intergenic 35.0%
AAAGAGGAGTTAGATGGTGA+TGG - chr4.2:39207937-39207956 None:intergenic 40.0%
AAGTATCATCAATCAGCAGC+TGG + chr4.2:39207351-39207370 MS.gene056590:CDS 40.0%
ACTCTTGCTTCCACTTGAAA+TGG - chr4.2:39209030-39209049 None:intergenic 40.0%
AGAAACCTCAAAAGGGTCAT+TGG + chr4.2:39208071-39208090 MS.gene056590:CDS 40.0%
CACTCAACAGAAACCTCAAA+AGG + chr4.2:39208063-39208082 MS.gene056590:CDS 40.0%
TCATGGTAAGGATCACATCA+TGG + chr4.2:39208143-39208162 MS.gene056590:CDS 40.0%
TCGAGTGTAGAATCTCCAAA+GGG - chr4.2:39209168-39209187 None:intergenic 40.0%
TGAAGATTCGTCATCATGTG+AGG + chr4.2:39208978-39208997 MS.gene056590:CDS 40.0%
TGCAAGAGCAATGAAGCTTT+GGG - chr4.2:39208196-39208215 None:intergenic 40.0%
! AGTTACTAGGGGGTGAATTT+TGG - chr4.2:39207990-39208009 None:intergenic 40.0%
! GTTACTAGGGGGTGAATTTT+GGG - chr4.2:39207989-39208008 None:intergenic 40.0%
! TTACTAGGGGGTGAATTTTG+GGG - chr4.2:39207988-39208007 None:intergenic 40.0%
!! TGACTTGCTGAGATCATTTG+TGG - chr4.2:39207851-39207870 None:intergenic 40.0%
!! TGTTGGTTCACCATTTCAAG+TGG + chr4.2:39209017-39209036 MS.gene056590:CDS 40.0%
!! TTTTGGGGGTTGTCAAAAGA+TGG - chr4.2:39207973-39207992 None:intergenic 40.0%
ATCAGTGTCTCCAACCGAAT+TGG + chr4.2:39208029-39208048 MS.gene056590:CDS 45.0%
ATCGCTGCATATGCATGGTT+TGG - chr4.2:39208959-39208978 None:intergenic 45.0%
CAGCAGCTGGTTATCTGATT+TGG + chr4.2:39207364-39207383 MS.gene056590:CDS 45.0%
CTGCAAGAGCAATGAAGCTT+TGG - chr4.2:39208197-39208216 None:intergenic 45.0%
GCTGAGATCATTTGTGGAAG+TGG - chr4.2:39207845-39207864 None:intergenic 45.0%
GTCGAGTGTAGAATCTCCAA+AGG - chr4.2:39209169-39209188 None:intergenic 45.0%
TCTTCATCGCTGCATATGCA+TGG - chr4.2:39208964-39208983 None:intergenic 45.0%
TTCTTGATGCAGATGTGGGA+GGG + chr4.2:39207764-39207783 MS.gene056590:CDS 45.0%
TTTCTTGATGCAGATGTGGG+AGG + chr4.2:39207763-39207782 MS.gene056590:CDS 45.0%
! TACTAGGGGGTGAATTTTGG+GGG - chr4.2:39207987-39208006 None:intergenic 45.0%
! TTCCAATGCAAGGAGCACAA+GGG + chr4.2:39209075-39209094 MS.gene056590:CDS 45.0%
!! CAAGTGGAAGCAAGAGTGTT+AGG + chr4.2:39209033-39209052 MS.gene056590:CDS 45.0%
!! CTGCATATGCATGGTTTGGT+CGG - chr4.2:39208955-39208974 None:intergenic 45.0%
!! GTTGATTCGGTTCCAATGCA+AGG + chr4.2:39209065-39209084 MS.gene056590:CDS 45.0%
!!! ACGAGGCCTTTTGCTTTTTG+AGG - chr4.2:39208121-39208140 None:intergenic 45.0%
!!! TTATTTTTTTTTGTAAATTT+TGG + chr4.2:39208613-39208632 MS.gene056590:intron 5.0%
!!! TTTATATTTTGAAATATTTA+GGG + chr4.2:39208405-39208424 MS.gene056590:intron 5.0%
TGATCCTTACCATGAGCACG+AGG - chr4.2:39208138-39208157 None:intergenic 50.0%
! GTTCCAATGCAAGGAGCACA+AGG + chr4.2:39209074-39209093 MS.gene056590:CDS 50.0%
! TCCAATGCAAGGAGCACAAG+GGG + chr4.2:39209076-39209095 MS.gene056590:CDS 50.0%
AAGGCCTCGTGCTCATGGTA+AGG + chr4.2:39208131-39208150 MS.gene056590:CDS 55.0%
AGCAAAAGGCCTCGTGCTCA+TGG + chr4.2:39208126-39208145 MS.gene056590:CDS 55.0%
GCCCCTTGTGCTCCTTGCAT+TGG - chr4.2:39209080-39209099 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 39207323 39209206 39207323 ID=MS.gene056590
chr4.2 mRNA 39207323 39209206 39207323 ID=MS.gene056590.t1;Parent=MS.gene056590
chr4.2 exon 39207323 39207385 39207323 ID=MS.gene056590.t1.exon1;Parent=MS.gene056590.t1
chr4.2 CDS 39207323 39207385 39207323 ID=cds.MS.gene056590.t1;Parent=MS.gene056590.t1
chr4.2 exon 39207718 39208239 39207718 ID=MS.gene056590.t1.exon2;Parent=MS.gene056590.t1
chr4.2 CDS 39207718 39208239 39207718 ID=cds.MS.gene056590.t1;Parent=MS.gene056590.t1
chr4.2 exon 39208868 39209206 39208868 ID=MS.gene056590.t1.exon3;Parent=MS.gene056590.t1
chr4.2 CDS 39208868 39209206 39208868 ID=cds.MS.gene056590.t1;Parent=MS.gene056590.t1
Gene Sequence

>MS.gene056590

ATGGAGGAAATCAACAACCAAGCAATGAAAGTATCATCAATCAGCAGCTGGTTATCTGATTTGGTAAGAAAATCAAAAGGCAATTATTCACCTTTCCTGCTTTCCAAATTCAAAGATGGTTGATTATTAATTAATTCTTTTGCCATTGATTAAGTTAAATGTAAGCTAAGTGAAGCTTATAATCTTATGCTATTTTACTCAATCATAGGTCTCAAGGGAAATAAGCCTAACCTTAAATAAGAATAAACATAGGTCTCAAATAGATTTGTAGGCCAAGTCTTCAAGATTTTTTTTTTTTTCAGACAATAATTGATGGACTTTATATTATTTGTCTCAACGTTGGAATAATATAGTCATTAATTAATTAACACTTGAACTTTTATTTTTTTTTGCAGGAAATGGACGAATACAATATATTTGCTGAGGAATGCAACCTTAATTTTCTTGATGCAGATGTGGGAGGGTTTCTTTCAGATGACATATCTAATGTATTTCAAGAACAAAACAAACAATTGGGGTCCACTTCCACAAATGATCTCAGCAAGTCATTCATTCACGAAACAATTGATAATAGTGACAAAATCAATGAATCACTTTCACCAAATATTTCTCCATCACCATCTAACTCCTCTTTTCAGTTTCAAATACCATCTTTTGACAACCCCCAAAATTCACCCCCTAGTAACTCAAAAGAGAATGAAACAATATCAGTGTCTCCAACCGAATTGGAAAATATGAATCACTCAACAGAAACCTCAAAAGGGTCATTGGAAAATGAAAAGTTTGAAGCCAAAACCTCAAAAAGCAAAAGGCCTCGTGCTCATGGTAAGGATCACATCATGGCTGAGAGAAATCGTAGAGAGAAACTCACCCAAAGCTTCATTGCTCTTGCAGCTCTTGTTCCTAACCTTAAAAAGGTATGTTATGTAATTTTCACTTACCCTATTAGCTAACTCTTAGAATCATCAACTATCAATCAATTACTTCATCGATAAATACATGTTGCACCAATTCATATATGTCATGTATAAGATTTTGATCACTAATATCTTTAAATATTTATCATAAAAAATTATGAAAAGTTTATATTTTGAAATATTTAGGGAGACAAATCGAACATCATATATATTAACGTTTCCCTTTACATATGATCAAAGTATGTTATATGAATGAGAAATGATATTTGAACATCCATTTTTTTGACAACTTTTGTGATAATTTTCTTTCTCATACTCACATTATTTTTTTACTTTACCTCTTTATTGCCTTGGTTTTTGTGCAAATTTTATTTTATTTTTTTTTGTAAATTTTGGTTGTCATATAAGTTGTCAACCAAATAGTTGTTCAAATAACACTCCTATATACACAAACAATATACATATTTAATAATTAATTACATATTTAATACATTCTTTGTCAAAAAATATTTGACATATAATTATGAGCGGTGAGTACAAATATAAGAAAATTAATTACATATTTAATACATTCTTTGTCAAAAAATATTTAATACATTCTTATCTTTCTTTATTATTTTTCTTTTAGATGGACAAGTTATCTGTACTAATTGACACTATCAAATACTTGAAAGAGCTTAAAAACCGATTGGAAGTTGTGGAAAAAAAGTCACCGACCAAACCATGCATATGCAGCGATGAAGATTCGTCATCATGTGAGGATAACATTGAATGTGTTGTTGGTTCACCATTTCAAGTGGAAGCAAGAGTGTTAGGAAAACAAGTGTTGATTCGGTTCCAATGCAAGGAGCACAAGGGGCTTCTAGTTAAAATTATGGTCGAAATTCAAAAATTTCAACTATTTGTTGTCAATAACAGTGTCTTACCCTTTGGAGATTCTACACTCGACATTACCATCATTGCTCAG

Protein sequence

>MS.gene056590.t1

MEEINNQAMKVSSISSWLSDLEMDEYNIFAEECNLNFLDADVGGFLSDDISNVFQEQNKQLGSTSTNDLSKSFIHETIDNSDKINESLSPNISPSPSNSSFQFQIPSFDNPQNSPPSNSKENETISVSPTELENMNHSTETSKGSLENEKFEAKTSKSKRPRAHGKDHIMAERNRREKLTQSFIALAALVPNLKKMDKLSVLIDTIKYLKELKNRLEVVEKKSPTKPCICSDEDSSSCEDNIECVVGSPFQVEARVLGKQVLIRFQCKEHKGLLVKIMVEIQKFQLFVVNNSVLPFGDSTLDITIIAQ