Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43787.t1 | XP_003615608.1 | 100 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 4.20E-111 | 410.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43787.t1 | Q9LUX9 | 70.8 | 202 | 59 | 0 | 1 | 202 | 1 | 202 | 6.0e-82 | 305.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43787.t1 | G7K6C8 | 100.0 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 3.0e-111 | 410.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052309 | MS.gene43787 | -0.80329 | 3.74E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene43787 | 0.858695 | 6.90E-63 | -1.69E-46 |
| MS.gene059899 | MS.gene43787 | 0.819988 | 8.70E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43787 | MS.gene40165 | PPI |
| MS.gene43787 | MS.gene28697 | PPI |
| MS.gene43787 | MS.gene028582 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43787.t1 | MTR_5g070030 | 100.000 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 9.76e-151 | 416 |
| MS.gene43787.t1 | MTR_2g081810 | 69.347 | 199 | 60 | 1 | 4 | 202 | 3 | 200 | 2.71e-102 | 294 |
| MS.gene43787.t1 | MTR_4g091900 | 69.802 | 202 | 60 | 1 | 1 | 202 | 1 | 201 | 3.12e-101 | 291 |
| MS.gene43787.t1 | MTR_8g466030 | 69.347 | 199 | 60 | 1 | 4 | 202 | 3 | 200 | 8.92e-101 | 290 |
| MS.gene43787.t1 | MTR_2g011080 | 65.829 | 199 | 67 | 1 | 4 | 202 | 3 | 200 | 3.94e-95 | 276 |
| MS.gene43787.t1 | MTR_4g091900 | 68.947 | 190 | 58 | 1 | 13 | 202 | 1 | 189 | 2.73e-93 | 270 |
| MS.gene43787.t1 | MTR_4g069250 | 63.959 | 197 | 71 | 0 | 5 | 201 | 52 | 248 | 1.42e-91 | 268 |
| MS.gene43787.t1 | MTR_2g011080 | 64.767 | 193 | 67 | 1 | 10 | 202 | 4 | 195 | 1.91e-90 | 263 |
| MS.gene43787.t1 | MTR_5g019620 | 60.406 | 197 | 78 | 0 | 5 | 201 | 53 | 249 | 1.83e-88 | 260 |
| MS.gene43787.t1 | MTR_2g011080 | 64.667 | 150 | 52 | 1 | 53 | 202 | 1 | 149 | 9.71e-67 | 202 |
| MS.gene43787.t1 | MTR_8g466080 | 68.966 | 116 | 36 | 0 | 87 | 202 | 1 | 116 | 1.98e-53 | 167 |
| MS.gene43787.t1 | MTR_4g091890 | 68.376 | 117 | 33 | 1 | 86 | 202 | 1 | 113 | 2.45e-52 | 164 |
| MS.gene43787.t1 | MTR_8g466110 | 45.600 | 125 | 41 | 4 | 53 | 177 | 1 | 98 | 6.94e-24 | 91.3 |
| MS.gene43787.t1 | MTR_8g466150 | 45.600 | 125 | 41 | 4 | 53 | 177 | 1 | 98 | 6.94e-24 | 91.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43787.t1 | AT5G58800 | 70.792 | 202 | 59 | 0 | 1 | 202 | 1 | 202 | 1.51e-108 | 310 |
| MS.gene43787.t1 | AT5G58800 | 70.792 | 202 | 59 | 0 | 1 | 202 | 1 | 202 | 1.51e-108 | 310 |
| MS.gene43787.t1 | AT5G54500 | 71.859 | 199 | 55 | 1 | 4 | 202 | 3 | 200 | 1.99e-104 | 299 |
| MS.gene43787.t1 | AT4G27270 | 71.357 | 199 | 56 | 1 | 4 | 202 | 3 | 200 | 1.27e-103 | 297 |
| MS.gene43787.t1 | AT4G27270 | 70.000 | 190 | 56 | 1 | 13 | 202 | 1 | 189 | 1.71e-96 | 279 |
| MS.gene43787.t1 | AT4G27270 | 70.000 | 190 | 56 | 1 | 13 | 202 | 1 | 189 | 1.71e-96 | 279 |
| MS.gene43787.t1 | AT4G36750 | 60.406 | 197 | 78 | 0 | 5 | 201 | 74 | 270 | 1.46e-89 | 264 |
| MS.gene43787.t1 | AT5G54500 | 58.500 | 200 | 74 | 3 | 4 | 203 | 3 | 193 | 1.04e-77 | 233 |
| MS.gene43787.t1 | AT4G27270 | 73.333 | 150 | 39 | 1 | 53 | 202 | 1 | 149 | 3.00e-76 | 226 |
Find 62 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGCTGATGCTTTGATATT+TGG | 0.205625 | 5.1:+54497922 | MS.gene43787:CDS |
| ATTCGATCCGAAAGAATTTC+AGG | 0.264514 | 5.1:-54497832 | None:intergenic |
| AATTCTTTCGGATCGAATAT+TGG | 0.279333 | 5.1:+54497837 | MS.gene43787:CDS |
| GCAAACCTGCTGGAATCTTC+TGG | 0.309872 | 5.1:+54498034 | MS.gene43787:CDS |
| TTTGAGATGGATGAGGTAAA+AGG | 0.353976 | 5.1:+54498523 | MS.gene43787:CDS |
| GTAAAAGGAGGCTCGGCTTA+TGG | 0.358303 | 5.1:+54498538 | MS.gene43787:CDS |
| AAGGCCTTCTTTGACGCTAC+TGG | 0.365059 | 5.1:+54497982 | MS.gene43787:CDS |
| ATACTCACGCTGAGAGTTCC+TGG | 0.369905 | 5.1:-54498080 | None:intergenic |
| TCAGCTACATCATCTGGTTT+AGG | 0.377031 | 5.1:-54497877 | None:intergenic |
| TTCTGGAGTACTGGATTTAA+CGG | 0.377796 | 5.1:+54498051 | MS.gene43787:CDS |
| TGCAGGTATTACTCATTGTA+TGG | 0.383898 | 5.1:+54497604 | MS.gene43787:intron |
| AATGTATTTACCCTGGTAAA+AGG | 0.394202 | 5.1:-54498620 | None:intergenic |
| ACAGGTACCTGAAATTCTTT+CGG | 0.401906 | 5.1:+54497825 | MS.gene43787:intron |
| GTTCCCCTTGGATACACCTT+TGG | 0.416898 | 5.1:+54498490 | MS.gene43787:CDS |
| TCAGCCTCCACAAGTTGTTC+CGG | 0.417062 | 5.1:-54497907 | None:intergenic |
| TCTGGAGTACTGGATTTAAC+GGG | 0.417125 | 5.1:+54498052 | MS.gene43787:CDS |
| TTAATGTCAGCTACATCATC+TGG | 0.433955 | 5.1:-54497883 | None:intergenic |
| AAGAAGGCCTTGAGCTGGCT+TGG | 0.441508 | 5.1:-54497970 | None:intergenic |
| GGTATGCTTTATGTTCCCCT+TGG | 0.446986 | 5.1:+54498478 | MS.gene43787:CDS |
| GCTGGAATCTTCTGGAGTAC+TGG | 0.455679 | 5.1:+54498042 | MS.gene43787:CDS |
| GGAGGCTCGGCTTATGGCGC+TGG | 0.456356 | 5.1:+54498544 | MS.gene43787:CDS |
| TGACGCTACTGGAGAGTTGT+GGG | 0.458101 | 5.1:+54497993 | MS.gene43787:CDS |
| GCACTCGCAGGCAAACCTGC+TGG | 0.474276 | 5.1:+54498024 | MS.gene43787:CDS |
| TATGGCGCTGGAACTTTCGC+TGG | 0.474798 | 5.1:+54498556 | MS.gene43787:CDS |
| TTGACGCTACTGGAGAGTTG+TGG | 0.476817 | 5.1:+54497992 | MS.gene43787:CDS |
| CTTGGATACACCTTTGGAAG+TGG | 0.482304 | 5.1:+54498496 | MS.gene43787:CDS |
| TCGAATATTGGAAAAGATGA+AGG | 0.496681 | 5.1:+54497849 | MS.gene43787:CDS |
| AAGGTGTTGAAGCAACACTT+TGG | 0.525141 | 5.1:+54497677 | MS.gene43787:CDS |
| TACTGAGCTAGAGCTTCAGC+AGG | 0.532454 | 5.1:+54498597 | MS.gene43787:CDS |
| GCTGGAACTTTCGCTGGAGA+TGG | 0.533057 | 5.1:+54498562 | MS.gene43787:CDS |
| CTCAAACATGCCACTTCCAA+AGG | 0.535164 | 5.1:-54498506 | None:intergenic |
| CGTCAAAGAAGGCCTTGAGC+TGG | 0.538429 | 5.1:-54497975 | None:intergenic |
| CACTTCCAAAGGTGTATCCA+AGG | 0.550034 | 5.1:-54498495 | None:intergenic |
| TGCTGAAGCTCTAGCTCAGT+AGG | 0.555488 | 5.1:-54498595 | None:intergenic |
| GTGTTGAAGCAACACTTTGG+AGG | 0.556934 | 5.1:+54497680 | MS.gene43787:CDS |
| CATTAAGCCGGAACAACTTG+TGG | 0.557154 | 5.1:+54497900 | MS.gene43787:CDS |
| TGGGCGTCTCAAGCACTCGC+AGG | 0.560559 | 5.1:+54498012 | MS.gene43787:CDS |
| GTATGGACATGTGAACACTA+TGG | 0.567651 | 5.1:+54497621 | MS.gene43787:CDS |
| TGGAAGTGGCATGTTTGAGA+TGG | 0.571222 | 5.1:+54498510 | MS.gene43787:CDS |
| CTCTCCAGTAGCGTCAAAGA+AGG | 0.574680 | 5.1:-54497986 | None:intergenic |
| GGATGAGGTAAAAGGAGGCT+CGG | 0.576627 | 5.1:+54498531 | MS.gene43787:CDS |
| CTGGAGTACTGGATTTAACG+GGG | 0.577372 | 5.1:+54498053 | MS.gene43787:CDS |
| ATAACTCAGTTAGCTCATCA+TGG | 0.582402 | 5.1:+54498457 | MS.gene43787:CDS |
| TTTCAGCAATGTATTTACCC+TGG | 0.584614 | 5.1:-54498627 | None:intergenic |
| GCTACATCATCTGGTTTAGG+AGG | 0.591266 | 5.1:-54497874 | None:intergenic |
| TGTTGAAGCAACACTTTGGA+GGG | 0.594022 | 5.1:+54497681 | MS.gene43787:CDS |
| TGATGTAGCTGACATTAAGC+CGG | 0.602082 | 5.1:+54497888 | MS.gene43787:CDS |
| GTACTCCAGAAGATTCCAGC+AGG | 0.603541 | 5.1:-54498039 | None:intergenic |
| TATGATGCCAAGCCAGCTCA+AGG | 0.606898 | 5.1:+54497963 | MS.gene43787:CDS |
| ACTTCCAAAGGTGTATCCAA+GGG | 0.617578 | 5.1:-54498494 | None:intergenic |
| TGGCATGTTTGAGATGGATG+AGG | 0.617807 | 5.1:+54498516 | MS.gene43787:CDS |
| GGCATCATACCAAAACGTGA+AGG | 0.648138 | 5.1:-54497949 | None:intergenic |
| TTAGAAGATGACTATCACCA+AGG | 0.664695 | 5.1:+54497439 | None:intergenic |
| TGGCAAGAGAAGTACACAAG+GGG | 0.666285 | 5.1:+54497641 | MS.gene43787:CDS |
| TGCTTACACAATGTAGACCT+TGG | 0.673794 | 5.1:-54497456 | None:intergenic |
| TAAGCCGGAACAACTTGTGG+AGG | 0.677801 | 5.1:+54497903 | MS.gene43787:CDS |
| GAGATGGATGAGGTAAAAGG+AGG | 0.679998 | 5.1:+54498526 | MS.gene43787:CDS |
| TGGAGTACTGGATTTAACGG+GGG | 0.687704 | 5.1:+54498054 | MS.gene43787:CDS |
| CTTCCAAAGGTGTATCCAAG+GGG | 0.694155 | 5.1:-54498493 | None:intergenic |
| TATGGCAAGAGAAGTACACA+AGG | 0.698554 | 5.1:+54497639 | MS.gene43787:CDS |
| ATGGCAAGAGAAGTACACAA+GGG | 0.726547 | 5.1:+54497640 | MS.gene43787:CDS |
| GGCAAGAGAAGTACACAAGG+GGG | 0.735429 | 5.1:+54497642 | MS.gene43787:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATTGTAAAAGAAAATATT+TGG | + | chr5.1:54497743-54497762 | MS.gene43787:intron | 15.0% |
| !! | TAGTTTAATCATAAAATGTT+TGG | + | chr5.1:54498229-54498248 | MS.gene43787:intron | 15.0% |
| !!! | TAGTATTGATCAAATTAAAA+TGG | + | chr5.1:54497525-54497544 | MS.gene43787:intron | 15.0% |
| !!! | TTGGTTTATTTTTTATGTAT+CGG | + | chr5.1:54498248-54498267 | MS.gene43787:intron | 15.0% |
| !! | ACTATTTATAAGATAGATAG+AGG | - | chr5.1:54498115-54498134 | None:intergenic | 20.0% |
| ! | AAGTAAAAAAAAGGGGAAAA+GGG | - | chr5.1:54497496-54497515 | None:intergenic | 25.0% |
| ! | ACATTGTGCAAGTAAAAAAA+AGG | - | chr5.1:54497505-54497524 | None:intergenic | 25.0% |
| ! | ATTGTGCAAGTAAAAAAAAG+GGG | - | chr5.1:54497503-54497522 | None:intergenic | 25.0% |
| ! | CATTGTGCAAGTAAAAAAAA+GGG | - | chr5.1:54497504-54497523 | None:intergenic | 25.0% |
| !! | ATTTGGATTCTTTTGTAGTT+AGG | + | chr5.1:54497760-54497779 | MS.gene43787:intron | 25.0% |
| AATGTATTTACCCTGGTAAA+AGG | - | chr5.1:54498623-54498642 | None:intergenic | 30.0% | |
| AATTCTTTCGGATCGAATAT+TGG | + | chr5.1:54497837-54497856 | MS.gene43787:CDS | 30.0% | |
| AGTAAAAAAAAGGGGAAAAG+GGG | - | chr5.1:54497495-54497514 | None:intergenic | 30.0% | |
| ATAAGATAGATAGAGGTCAA+AGG | - | chr5.1:54498108-54498127 | None:intergenic | 30.0% | |
| CAAAAACATAAGGACACATA+AGG | - | chr5.1:54498277-54498296 | None:intergenic | 30.0% | |
| CAAGTAAAAAAAAGGGGAAA+AGG | - | chr5.1:54497497-54497516 | None:intergenic | 30.0% | |
| GATTTCAGTTTGATGAAAAC+AGG | + | chr5.1:54497807-54497826 | MS.gene43787:intron | 30.0% | |
| GGAAAACAGATTGTGAAATT+CGG | - | chr5.1:54498166-54498185 | None:intergenic | 30.0% | |
| TAAGATAGATAGAGGTCAAA+GGG | - | chr5.1:54498107-54498126 | None:intergenic | 30.0% | |
| TCGAATATTGGAAAAGATGA+AGG | + | chr5.1:54497849-54497868 | MS.gene43787:CDS | 30.0% | |
| ! | CTTATGTGTCCTTATGTTTT+TGG | + | chr5.1:54498275-54498294 | MS.gene43787:intron | 30.0% |
| ! | TGTATCACATCAATTTTTGC+AGG | + | chr5.1:54497587-54497606 | MS.gene43787:intron | 30.0% |
| AAGATAGATAGAGGTCAAAG+GGG | - | chr5.1:54498106-54498125 | None:intergenic | 35.0% | |
| ACAGGTACCTGAAATTCTTT+CGG | + | chr5.1:54497825-54497844 | MS.gene43787:intron | 35.0% | |
| ATAACTCAGTTAGCTCATCA+TGG | + | chr5.1:54498457-54498476 | MS.gene43787:CDS | 35.0% | |
| ATTCGATCCGAAAGAATTTC+AGG | - | chr5.1:54497835-54497854 | None:intergenic | 35.0% | |
| CCATCAATAACTCTCATAAG+AGG | + | chr5.1:54498374-54498393 | MS.gene43787:intron | 35.0% | |
| CCTCTTATGAGAGTTATTGA+TGG | - | chr5.1:54498377-54498396 | None:intergenic | 35.0% | |
| CTGCTAATGCCAAAAACATA+AGG | - | chr5.1:54498287-54498306 | None:intergenic | 35.0% | |
| GTAGTTAGGATCATTTGTCT+CGG | + | chr5.1:54497774-54497793 | MS.gene43787:intron | 35.0% | |
| TCAGTTTCCTCTTTATGTCA+TGG | + | chr5.1:54498418-54498437 | MS.gene43787:intron | 35.0% | |
| TCCTAATTTCTACTGACATG+TGG | + | chr5.1:54498140-54498159 | MS.gene43787:intron | 35.0% | |
| TGCAGGTATTACTCATTGTA+TGG | + | chr5.1:54497604-54497623 | MS.gene43787:intron | 35.0% | |
| TTAATGTCAGCTACATCATC+TGG | - | chr5.1:54497886-54497905 | None:intergenic | 35.0% | |
| TTTCAGCAATGTATTTACCC+TGG | - | chr5.1:54498630-54498649 | None:intergenic | 35.0% | |
| ! | GTTTTCCGCTACATTTTTCT+CGG | + | chr5.1:54498179-54498198 | MS.gene43787:intron | 35.0% |
| ! | TTTGAGATGGATGAGGTAAA+AGG | + | chr5.1:54498523-54498542 | MS.gene43787:CDS | 35.0% |
| ! | TTTTCCGCTACATTTTTCTC+GGG | + | chr5.1:54498180-54498199 | MS.gene43787:intron | 35.0% |
| !! | TTCTGGAGTACTGGATTTAA+CGG | + | chr5.1:54498051-54498070 | MS.gene43787:CDS | 35.0% |
| !!! | TTTGGTTTTCCTTCACGTTT+TGG | + | chr5.1:54497940-54497959 | MS.gene43787:CDS | 35.0% |
| CTTTATGTCATGGTTGCAGA+TGG | + | chr5.1:54498428-54498447 | MS.gene43787:intron | 40.0% | |
| GAGGCTGATGCTTTGATATT+TGG | + | chr5.1:54497922-54497941 | MS.gene43787:CDS | 40.0% | |
| GCCACATGTCAGTAGAAATT+AGG | - | chr5.1:54498144-54498163 | None:intergenic | 40.0% | |
| GTATGGACATGTGAACACTA+TGG | + | chr5.1:54497621-54497640 | MS.gene43787:CDS | 40.0% | |
| TAGTCCCGAGAAAAATGTAG+CGG | - | chr5.1:54498187-54498206 | None:intergenic | 40.0% | |
| TCTGCAACCATGACATAAAG+AGG | - | chr5.1:54498428-54498447 | None:intergenic | 40.0% | |
| TGATGTAGCTGACATTAAGC+CGG | + | chr5.1:54497888-54497907 | MS.gene43787:CDS | 40.0% | |
| TGCTTACACAATGTAGACCT+TGG | - | chr5.1:54497459-54497478 | None:intergenic | 40.0% | |
| TGTTGAAGCAACACTTTGGA+GGG | + | chr5.1:54497681-54497700 | MS.gene43787:CDS | 40.0% | |
| TGTTGGAGTTCATGCTTCAT+AGG | + | chr5.1:54498345-54498364 | MS.gene43787:intron | 40.0% | |
| ! | ACTTCCAAAGGTGTATCCAA+GGG | - | chr5.1:54498497-54498516 | None:intergenic | 40.0% |
| ! | ATGGCAAGAGAAGTACACAA+GGG | + | chr5.1:54497640-54497659 | MS.gene43787:CDS | 40.0% |
| ! | TATGGCAAGAGAAGTACACA+AGG | + | chr5.1:54497639-54497658 | MS.gene43787:CDS | 40.0% |
| ! | TCAGCTACATCATCTGGTTT+AGG | - | chr5.1:54497880-54497899 | None:intergenic | 40.0% |
| !! | AAGGTGTTGAAGCAACACTT+TGG | + | chr5.1:54497677-54497696 | MS.gene43787:CDS | 40.0% |
| !! | TCTGGAGTACTGGATTTAAC+GGG | + | chr5.1:54498052-54498071 | MS.gene43787:CDS | 40.0% |
| CATTAAGCCGGAACAACTTG+TGG | + | chr5.1:54497900-54497919 | MS.gene43787:CDS | 45.0% | |
| GAGATGGATGAGGTAAAAGG+AGG | + | chr5.1:54498526-54498545 | MS.gene43787:CDS | 45.0% | |
| GGCATCATACCAAAACGTGA+AGG | - | chr5.1:54497952-54497971 | None:intergenic | 45.0% | |
| GGTATGCTTTATGTTCCCCT+TGG | + | chr5.1:54498478-54498497 | MS.gene43787:CDS | 45.0% | |
| GTGTTGAAGCAACACTTTGG+AGG | + | chr5.1:54497680-54497699 | MS.gene43787:CDS | 45.0% | |
| TGGAAGTGGCATGTTTGAGA+TGG | + | chr5.1:54498510-54498529 | MS.gene43787:CDS | 45.0% | |
| ! | CACTTCCAAAGGTGTATCCA+AGG | - | chr5.1:54498498-54498517 | None:intergenic | 45.0% |
| ! | CTCAAACATGCCACTTCCAA+AGG | - | chr5.1:54498509-54498528 | None:intergenic | 45.0% |
| ! | CTTCCAAAGGTGTATCCAAG+GGG | - | chr5.1:54498496-54498515 | None:intergenic | 45.0% |
| ! | CTTGGATACACCTTTGGAAG+TGG | + | chr5.1:54498496-54498515 | MS.gene43787:CDS | 45.0% |
| ! | GCTACATCATCTGGTTTAGG+AGG | - | chr5.1:54497877-54497896 | None:intergenic | 45.0% |
| ! | TGGCAAGAGAAGTACACAAG+GGG | + | chr5.1:54497641-54497660 | MS.gene43787:CDS | 45.0% |
| ! | TGGCATGTTTGAGATGGATG+AGG | + | chr5.1:54498516-54498535 | MS.gene43787:CDS | 45.0% |
| !! | CTGGAGTACTGGATTTAACG+GGG | + | chr5.1:54498053-54498072 | MS.gene43787:CDS | 45.0% |
| !! | TGGAGTACTGGATTTAACGG+GGG | + | chr5.1:54498054-54498073 | MS.gene43787:CDS | 45.0% |
| AAGGCCTTCTTTGACGCTAC+TGG | + | chr5.1:54497982-54498001 | MS.gene43787:CDS | 50.0% | |
| AAGGGGGCAGCTTCAATTGA+AGG | + | chr5.1:54497658-54497677 | MS.gene43787:CDS | 50.0% | |
| ATACTCACGCTGAGAGTTCC+TGG | - | chr5.1:54498083-54498102 | None:intergenic | 50.0% | |
| CTCTCCAGTAGCGTCAAAGA+AGG | - | chr5.1:54497989-54498008 | None:intergenic | 50.0% | |
| GCAAACCTGCTGGAATCTTC+TGG | + | chr5.1:54498034-54498053 | MS.gene43787:CDS | 50.0% | |
| GGATGAGGTAAAAGGAGGCT+CGG | + | chr5.1:54498531-54498550 | MS.gene43787:CDS | 50.0% | |
| GTAAAAGGAGGCTCGGCTTA+TGG | + | chr5.1:54498538-54498557 | MS.gene43787:CDS | 50.0% | |
| GTACTCCAGAAGATTCCAGC+AGG | - | chr5.1:54498042-54498061 | None:intergenic | 50.0% | |
| GTTCCCCTTGGATACACCTT+TGG | + | chr5.1:54498490-54498509 | MS.gene43787:CDS | 50.0% | |
| TAAGCCGGAACAACTTGTGG+AGG | + | chr5.1:54497903-54497922 | MS.gene43787:CDS | 50.0% | |
| TACTGAGCTAGAGCTTCAGC+AGG | + | chr5.1:54498597-54498616 | MS.gene43787:CDS | 50.0% | |
| TATGATGCCAAGCCAGCTCA+AGG | + | chr5.1:54497963-54497982 | MS.gene43787:CDS | 50.0% | |
| TCAGCCTCCACAAGTTGTTC+CGG | - | chr5.1:54497910-54497929 | None:intergenic | 50.0% | |
| TGACGCTACTGGAGAGTTGT+GGG | + | chr5.1:54497993-54498012 | MS.gene43787:CDS | 50.0% | |
| TTGACGCTACTGGAGAGTTG+TGG | + | chr5.1:54497992-54498011 | MS.gene43787:CDS | 50.0% | |
| ! | AGTACTGGATTTAACGGGGG+TGG | + | chr5.1:54498057-54498076 | MS.gene43787:CDS | 50.0% |
| ! | CTTCAGCAGGCCTTTTACCA+GGG | + | chr5.1:54498610-54498629 | MS.gene43787:CDS | 50.0% |
| ! | GGCAAGAGAAGTACACAAGG+GGG | + | chr5.1:54497642-54497661 | MS.gene43787:CDS | 50.0% |
| ! | TGCTGAAGCTCTAGCTCAGT+AGG | - | chr5.1:54498598-54498617 | None:intergenic | 50.0% |
| !! | GCTGGAATCTTCTGGAGTAC+TGG | + | chr5.1:54498042-54498061 | MS.gene43787:CDS | 50.0% |
| AAGAAGGCCTTGAGCTGGCT+TGG | - | chr5.1:54497973-54497992 | None:intergenic | 55.0% | |
| CGTCAAAGAAGGCCTTGAGC+TGG | - | chr5.1:54497978-54497997 | None:intergenic | 55.0% | |
| GCTGGAACTTTCGCTGGAGA+TGG | + | chr5.1:54498562-54498581 | MS.gene43787:CDS | 55.0% | |
| TGCCTGTGTCCATGTCGTGT+CGG | + | chr5.1:54498315-54498334 | MS.gene43787:intron | 55.0% | |
| ! | GCTTCAGCAGGCCTTTTACC+AGG | + | chr5.1:54498609-54498628 | MS.gene43787:CDS | 55.0% |
| ! | TATGGCGCTGGAACTTTCGC+TGG | + | chr5.1:54498556-54498575 | MS.gene43787:CDS | 55.0% |
| ACCCGACACGACATGGACAC+AGG | - | chr5.1:54498320-54498339 | None:intergenic | 60.0% | |
| CACGAACACCCGACACGACA+TGG | - | chr5.1:54498327-54498346 | None:intergenic | 60.0% | |
| GCCTGTGTCCATGTCGTGTC+GGG | + | chr5.1:54498316-54498335 | MS.gene43787:intron | 60.0% | |
| GTCGTGTCGGGTGTTCGTGT+TGG | + | chr5.1:54498328-54498347 | MS.gene43787:intron | 60.0% | |
| TGGATTTAACGGGGGTGGCC+AGG | + | chr5.1:54498062-54498081 | MS.gene43787:CDS | 60.0% | |
| GCACTCGCAGGCAAACCTGC+TGG | + | chr5.1:54498024-54498043 | MS.gene43787:CDS | 65.0% | |
| TGGGCGTCTCAAGCACTCGC+AGG | + | chr5.1:54498012-54498031 | MS.gene43787:CDS | 65.0% | |
| GGAGGCTCGGCTTATGGCGC+TGG | + | chr5.1:54498544-54498563 | MS.gene43787:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 54497446 | 54498672 | 54497446 | ID=MS.gene43787 |
| chr5.1 | mRNA | 54497446 | 54498672 | 54497446 | ID=MS.gene43787.t1;Parent=MS.gene43787 |
| chr5.1 | exon | 54497446 | 54497471 | 54497446 | ID=MS.gene43787.t1.exon1;Parent=MS.gene43787.t1 |
| chr5.1 | CDS | 54497446 | 54497471 | 54497446 | ID=cds.MS.gene43787.t1;Parent=MS.gene43787.t1 |
| chr5.1 | exon | 54497609 | 54497702 | 54497609 | ID=MS.gene43787.t1.exon2;Parent=MS.gene43787.t1 |
| chr5.1 | CDS | 54497609 | 54497702 | 54497609 | ID=cds.MS.gene43787.t1;Parent=MS.gene43787.t1 |
| chr5.1 | exon | 54497829 | 54498094 | 54497829 | ID=MS.gene43787.t1.exon3;Parent=MS.gene43787.t1 |
| chr5.1 | CDS | 54497829 | 54498094 | 54497829 | ID=cds.MS.gene43787.t1;Parent=MS.gene43787.t1 |
| chr5.1 | exon | 54498447 | 54498672 | 54498447 | ID=MS.gene43787.t1.exon4;Parent=MS.gene43787.t1 |
| chr5.1 | CDS | 54498447 | 54498672 | 54498447 | ID=cds.MS.gene43787.t1;Parent=MS.gene43787.t1 |
| Gene Sequence |
| Protein sequence |
