Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44010.t1 | XP_013468989.1 | 96.7 | 181 | 6 | 0 | 1 | 181 | 1 | 181 | 1.10E-102 | 382.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44010.t1 | A0A072VN18 | 96.7 | 181 | 6 | 0 | 1 | 181 | 1 | 181 | 7.7e-103 | 382.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050961 | MS.gene44010 | 0.832788 | 7.74E-56 | -1.69E-46 |
| MS.gene052533 | MS.gene44010 | 0.812432 | 4.25E-51 | -1.69E-46 |
| MS.gene056360 | MS.gene44010 | 0.800122 | 1.67E-48 | -1.69E-46 |
| MS.gene056677 | MS.gene44010 | 0.805039 | 1.62E-49 | -1.69E-46 |
| MS.gene05985 | MS.gene44010 | -0.80521 | 1.49E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44010.t1 | MTR_1g080990 | 96.685 | 181 | 6 | 0 | 1 | 181 | 1 | 181 | 4.87e-130 | 365 |
| MS.gene44010.t1 | MTR_1g080990 | 98.065 | 155 | 3 | 0 | 1 | 155 | 1 | 155 | 3.29e-112 | 318 |
| MS.gene44010.t1 | MTR_1g080990 | 72.928 | 181 | 7 | 1 | 1 | 181 | 1 | 139 | 2.33e-85 | 250 |
| MS.gene44010.t1 | MTR_7g114890 | 50.270 | 185 | 81 | 4 | 1 | 174 | 1 | 185 | 8.85e-56 | 177 |
| MS.gene44010.t1 | MTR_7g114890 | 50.270 | 185 | 81 | 4 | 1 | 174 | 1 | 185 | 9.95e-56 | 177 |
| MS.gene44010.t1 | MTR_1g041410 | 49.057 | 159 | 76 | 2 | 12 | 166 | 10 | 167 | 5.48e-50 | 162 |
| MS.gene44010.t1 | MTR_7g114890 | 48.503 | 167 | 75 | 4 | 1 | 156 | 1 | 167 | 6.09e-46 | 150 |
| MS.gene44010.t1 | MTR_7g114880 | 40.909 | 88 | 47 | 3 | 1 | 85 | 1 | 86 | 3.05e-13 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44010.t1 | AT4G14746 | 37.423 | 163 | 90 | 3 | 10 | 166 | 10 | 166 | 7.93e-32 | 115 |
| MS.gene44010.t1 | AT4G14746 | 33.645 | 107 | 60 | 3 | 10 | 111 | 10 | 110 | 1.24e-12 | 64.3 |
Find 60 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAGAAGATTATAATAAT+TGG | 0.152675 | 1.3:+57397702 | None:intergenic |
| TTTGTTTGTGAATGCGATTC+TGG | 0.220907 | 1.3:-57398503 | MS.gene44010:CDS |
| TTCTGATGATGTGTCTAATT+TGG | 0.220919 | 1.3:-57397254 | MS.gene44010:CDS |
| GTGTGTATGTGTCTTGTTCT+TGG | 0.257626 | 1.3:+57397741 | None:intergenic |
| TTGAGAAGATTATAATAATT+GGG | 0.290960 | 1.3:+57397703 | None:intergenic |
| TCCCCAGCAAGCTCAATCTT+TGG | 0.317543 | 1.3:-57397228 | MS.gene44010:CDS |
| CCTCCAAAGATTGAGCTTGC+TGG | 0.322376 | 1.3:+57397225 | None:intergenic |
| TGAAACTTTAATTCCAAGTC+TGG | 0.344971 | 1.3:+57397513 | None:intergenic |
| ATGGGTTCTTTCAAGTTGTT+GGG | 0.370656 | 1.3:-57398860 | MS.gene44010:CDS |
| CTTGTAGGTAGCTTGAATTA+TGG | 0.388414 | 1.3:-57398263 | MS.gene44010:intron |
| AATGGGTTCTTTCAAGTTGT+TGG | 0.394087 | 1.3:-57398861 | MS.gene44010:CDS |
| CTCCAAAGATTGAGCTTGCT+GGG | 0.403250 | 1.3:+57397226 | None:intergenic |
| ATATATCATCATCTTCATCT+TGG | 0.410673 | 1.3:+57398468 | None:intergenic |
| ATTAAAGTTTCAAATTCAAC+CGG | 0.417259 | 1.3:-57397502 | MS.gene44010:CDS |
| TATATCATCATCTTCATCTT+GGG | 0.418577 | 1.3:+57398469 | None:intergenic |
| TTGCGAGGTAAAGTCTTCTC+TGG | 0.418920 | 1.3:+57398215 | None:intergenic |
| TCTGGAACTGGAGGAGGTGC+TGG | 0.422912 | 1.3:+57398233 | None:intergenic |
| GGATCTGATTGTTCCAGACT+TGG | 0.423037 | 1.3:-57397526 | MS.gene44010:CDS |
| AAAATCCCCTTTGGCAGCCA+TGG | 0.429161 | 1.3:+57398805 | None:intergenic |
| GGTAAAGTCTTCTCTGGAAC+TGG | 0.430461 | 1.3:+57398221 | None:intergenic |
| ACTGTGTTGTTGATTTCAAC+GGG | 0.460186 | 1.3:-57397186 | MS.gene44010:CDS |
| TACTTCCCATGGCTGCCAAA+GGG | 0.472045 | 1.3:-57398811 | MS.gene44010:CDS |
| GTCTTCTCTGGAACTGGAGG+AGG | 0.479737 | 1.3:+57398227 | None:intergenic |
| CACTGTGTTGTTGATTTCAA+CGG | 0.481718 | 1.3:-57397187 | MS.gene44010:CDS |
| TCTTTGGAGGAAGGTTCCAT+TGG | 0.490994 | 1.3:-57397212 | MS.gene44010:CDS |
| TTTCAACGGGTATGGTTATG+TGG | 0.491371 | 1.3:-57397173 | MS.gene44010:CDS |
| GTTGTTGATTTCAACGGGTA+TGG | 0.491561 | 1.3:-57397181 | MS.gene44010:CDS |
| CCAGCAAGCTCAATCTTTGG+AGG | 0.494478 | 1.3:-57397225 | MS.gene44010:CDS |
| ATCATCAACAAAATCCCCTT+TGG | 0.497557 | 1.3:+57398796 | None:intergenic |
| ATGGTTATGTGGAGCTAGCT+AGG | 0.499858 | 1.3:-57397162 | MS.gene44010:CDS |
| GTTGTTGGGTCTTATAGCCA+TGG | 0.505786 | 1.3:-57398846 | MS.gene44010:CDS |
| AGCTAGCTAGGATGCATAGA+TGG | 0.514556 | 1.3:-57397150 | MS.gene44010:CDS |
| TGAGAAGATTATAATAATTG+GGG | 0.515021 | 1.3:+57397704 | None:intergenic |
| ATTCACAAACAAAGTTCAAA+GGG | 0.522384 | 1.3:+57398513 | None:intergenic |
| TTTGTGAATGCGATTCTGGC+TGG | 0.522677 | 1.3:-57398499 | MS.gene44010:CDS |
| ACCATGACTCTCAACATCTC+CGG | 0.532665 | 1.3:+57397483 | None:intergenic |
| CATTCACAAACAAAGTTCAA+AGG | 0.535528 | 1.3:+57398512 | None:intergenic |
| CTACTTCCCATGGCTGCCAA+AGG | 0.546322 | 1.3:-57398812 | MS.gene44010:CDS |
| TCTCATGTTACTACTTCCCA+TGG | 0.547836 | 1.3:-57398822 | MS.gene44010:CDS |
| TATTGGGCATATTGTGGAGA+AGG | 0.548373 | 1.3:-57397772 | MS.gene44010:CDS |
| CAAGCTCAATCTTTGGAGGA+AGG | 0.555181 | 1.3:-57397221 | MS.gene44010:CDS |
| AGAAAAGGTTTGTGAAGAAG+TGG | 0.556344 | 1.3:-57398573 | MS.gene44010:CDS |
| AAATCCCCTTTGGCAGCCAT+GGG | 0.560106 | 1.3:+57398806 | None:intergenic |
| TCAACAACACAGTGATCCAA+TGG | 0.563270 | 1.3:+57397196 | None:intergenic |
| GCTTGCTATTGGGCATATTG+TGG | 0.565530 | 1.3:-57397778 | MS.gene44010:CDS |
| ACCGGAGATGTTGAGAGTCA+TGG | 0.572906 | 1.3:-57397484 | MS.gene44010:intron |
| GAACTGGAGGAGGTGCTGGT+TGG | 0.589415 | 1.3:+57398237 | None:intergenic |
| GAAGAAGTGGAGTGTGGGAA+AGG | 0.596466 | 1.3:-57398560 | MS.gene44010:CDS |
| GCTTACATTCACTGTAACAA+GGG | 0.603257 | 1.3:+57397668 | None:intergenic |
| TCCAAAGATTGAGCTTGCTG+GGG | 0.605382 | 1.3:+57397227 | None:intergenic |
| TGCTTACATTCACTGTAACA+AGG | 0.610685 | 1.3:+57397667 | None:intergenic |
| ACTTCCCATGGCTGCCAAAG+GGG | 0.616013 | 1.3:-57398810 | MS.gene44010:CDS |
| AAAGTCTTCTCTGGAACTGG+AGG | 0.629011 | 1.3:+57398224 | None:intergenic |
| GTTTGTGAAGAAGTGGAGTG+TGG | 0.633621 | 1.3:-57398566 | MS.gene44010:CDS |
| TTTGTGAAGAAGTGGAGTGT+GGG | 0.637331 | 1.3:-57398565 | MS.gene44010:CDS |
| TTACATTGAGGAATGACACA+TGG | 0.645633 | 1.3:+57398428 | None:intergenic |
| GTTACACTTACGATCAAAAG+CGG | 0.661338 | 1.3:+57398187 | None:intergenic |
| AAGTAGTAACATGAGAACCA+TGG | 0.695164 | 1.3:+57398829 | None:intergenic |
| TCAAAAGCGGAAATATTGCG+AGG | 0.697244 | 1.3:+57398200 | None:intergenic |
| GTGTGGGAAAGGAAACTGTG+TGG | 0.765418 | 1.3:-57398549 | MS.gene44010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAACTTAATTTTTTTTATGA+AGG | - | chr1.3:57397660-57397679 | MS.gene44010:intron | 10.0% |
| !! | ATTGAGAAGATTATAATAAT+TGG | + | chr1.3:57398293-57398312 | None:intergenic | 15.0% |
| !! | CAAAATAACTGAATAAATAA+AGG | + | chr1.3:57398359-57398378 | None:intergenic | 15.0% |
| !! | TATATATGCATTAGATATAT+AGG | + | chr1.3:57397266-57397285 | None:intergenic | 15.0% |
| !! | TTGAGAAGATTATAATAATT+GGG | + | chr1.3:57398292-57398311 | None:intergenic | 15.0% |
| !!! | AAAGGTTCATAATTTTTTTT+TGG | - | chr1.3:57398045-57398064 | MS.gene44010:intron | 15.0% |
| !! | AACCATATTATCAATTCAAA+AGG | - | chr1.3:57398027-57398046 | MS.gene44010:intron | 20.0% |
| !! | ACTGAATAAATAAAGGTTTA+AGG | + | chr1.3:57398352-57398371 | None:intergenic | 20.0% |
| !! | ATATCCATATATATATGTCA+CGG | + | chr1.3:57397390-57397409 | None:intergenic | 20.0% |
| !! | ATATCTAATGCATATATACA+TGG | - | chr1.3:57397268-57397287 | MS.gene44010:CDS | 20.0% |
| !! | ATTAAAGTTTCAAATTCAAC+CGG | - | chr1.3:57398490-57398509 | MS.gene44010:CDS | 20.0% |
| !! | TATTCTATCATTTATCTTGT+AGG | - | chr1.3:57397714-57397733 | MS.gene44010:CDS | 20.0% |
| !! | TGAGAAGATTATAATAATTG+GGG | + | chr1.3:57398291-57398310 | None:intergenic | 20.0% |
| !! | TTCATATTATATGCACAAAA+AGG | - | chr1.3:57398076-57398095 | MS.gene44010:intron | 20.0% |
| !!! | AAATTTTGCTAGTTTTCTTA+TGG | - | chr1.3:57398666-57398685 | MS.gene44010:intron | 20.0% |
| !!! | AACCTTTTGAATTGATAATA+TGG | + | chr1.3:57398032-57398051 | None:intergenic | 20.0% |
| !!! | GGTTCAAGATTTTTAAATTT+AGG | - | chr1.3:57398634-57398653 | MS.gene44010:intron | 20.0% |
| !!! | TTATTCAGTTATTTTGACAA+TGG | - | chr1.3:57398363-57398382 | MS.gene44010:intron | 20.0% |
| ! | AATTGAAGTTCATTAACACT+AGG | - | chr1.3:57397936-57397955 | MS.gene44010:intron | 25.0% |
| ! | AGAGATTGAAATTTACATTG+AGG | + | chr1.3:57397579-57397598 | None:intergenic | 25.0% |
| ! | ATATATCATCATCTTCATCT+TGG | + | chr1.3:57397527-57397546 | None:intergenic | 25.0% |
| ! | ATTCACAAACAAAGTTCAAA+GGG | + | chr1.3:57397482-57397501 | None:intergenic | 25.0% |
| ! | ATTGAAGTTCATTAACACTA+GGG | - | chr1.3:57397937-57397956 | MS.gene44010:intron | 25.0% |
| ! | CAAGATAAATGATAGAATAG+AGG | + | chr1.3:57397713-57397732 | None:intergenic | 25.0% |
| ! | CAAGTAAATAAGAGTTAGTA+AGG | + | chr1.3:57397608-57397627 | None:intergenic | 25.0% |
| ! | GGATATATTAATTGCAGAAA+AGG | - | chr1.3:57397404-57397423 | MS.gene44010:intron | 25.0% |
| ! | TATATCATCATCTTCATCTT+GGG | + | chr1.3:57397526-57397545 | None:intergenic | 25.0% |
| ! | TTAACCGTGACATATATATA+TGG | - | chr1.3:57397383-57397402 | MS.gene44010:intron | 25.0% |
| !!! | AATATGGTTCAGTTTTTTTG+TGG | + | chr1.3:57398016-57398035 | None:intergenic | 25.0% |
| !!! | ATATTTTTGTAGCTTGCTAT+TGG | - | chr1.3:57398203-57398222 | MS.gene44010:CDS | 25.0% |
| !!! | TATTTTTGTAGCTTGCTATT+GGG | - | chr1.3:57398204-57398223 | MS.gene44010:CDS | 25.0% |
| !!! | TTAAATTTTGAAGGTACTCT+TGG | - | chr1.3:57398445-57398464 | MS.gene44010:CDS | 25.0% |
| AAAAATGAGTTTACGTACCA+AGG | + | chr1.3:57397224-57397243 | None:intergenic | 30.0% | |
| AACACAGAAATTGTTACCAA+CGG | - | chr1.3:57398603-57398622 | MS.gene44010:intron | 30.0% | |
| ACAAAAAGGTTTCATGAGTT+TGG | - | chr1.3:57398090-57398109 | MS.gene44010:intron | 30.0% | |
| AGAAGAATATTGACCAAACA+TGG | - | chr1.3:57398403-57398422 | MS.gene44010:intron | 30.0% | |
| AGTAAAGTCTTGCTAAAATC+AGG | - | chr1.3:57397879-57397898 | MS.gene44010:intron | 30.0% | |
| CATTCACAAACAAAGTTCAA+AGG | + | chr1.3:57397483-57397502 | None:intergenic | 30.0% | |
| CCAAGATATTAATCCATGTT+TGG | + | chr1.3:57398419-57398438 | None:intergenic | 30.0% | |
| GTAAATAAGAGTTAGTAAGG+AGG | + | chr1.3:57397605-57397624 | None:intergenic | 30.0% | |
| TGAAACTTTAATTCCAAGTC+TGG | + | chr1.3:57398482-57398501 | None:intergenic | 30.0% | |
| TGATAGAATAGAGGAGATTT+AGG | + | chr1.3:57397704-57397723 | None:intergenic | 30.0% | |
| TGGTAACAATTTCTGTGTTA+GGG | + | chr1.3:57398602-57398621 | None:intergenic | 30.0% | |
| TTGAAGTTCATTAACACTAG+GGG | - | chr1.3:57397938-57397957 | MS.gene44010:intron | 30.0% | |
| ! | AACATGGATTAATATCTTGG+TGG | - | chr1.3:57398419-57398438 | MS.gene44010:intron | 30.0% |
| ! | CCAAACATGGATTAATATCT+TGG | - | chr1.3:57398416-57398435 | MS.gene44010:intron | 30.0% |
| ! | TTCTGATGATGTGTCTAATT+TGG | - | chr1.3:57398738-57398757 | MS.gene44010:intron | 30.0% |
| ! | TTGGTAACAATTTCTGTGTT+AGG | + | chr1.3:57398603-57398622 | None:intergenic | 30.0% |
| !! | ACTTAACTCTTTGTTGACTT+TGG | - | chr1.3:57397831-57397850 | MS.gene44010:intron | 30.0% |
| !!! | TGGTGGACTTTAAATTTTGA+AGG | - | chr1.3:57398436-57398455 | MS.gene44010:CDS | 30.0% |
| AAGTAGTAACATGAGAACCA+TGG | + | chr1.3:57397166-57397185 | None:intergenic | 35.0% | |
| AGAAAAGGTTTGTGAAGAAG+TGG | - | chr1.3:57397419-57397438 | MS.gene44010:intron | 35.0% | |
| ATCATCAACAAAATCCCCTT+TGG | + | chr1.3:57397199-57397218 | None:intergenic | 35.0% | |
| ATCCATAAACTGAACCAAAC+TGG | - | chr1.3:57397989-57398008 | MS.gene44010:intron | 35.0% | |
| CTTGTAGGTAGCTTGAATTA+TGG | - | chr1.3:57397729-57397748 | MS.gene44010:CDS | 35.0% | |
| GCTTACATTCACTGTAACAA+GGG | + | chr1.3:57398327-57398346 | None:intergenic | 35.0% | |
| GTTACACTTACGATCAAAAG+CGG | + | chr1.3:57397808-57397827 | None:intergenic | 35.0% | |
| TGCTTACATTCACTGTAACA+AGG | + | chr1.3:57398328-57398347 | None:intergenic | 35.0% | |
| TTACATTGAGGAATGACACA+TGG | + | chr1.3:57397567-57397586 | None:intergenic | 35.0% | |
| TTTGTTTGTGAATGCGATTC+TGG | - | chr1.3:57397489-57397508 | MS.gene44010:CDS | 35.0% | |
| !! | ACTGTGTTGTTGATTTCAAC+GGG | - | chr1.3:57398806-57398825 | MS.gene44010:CDS | 35.0% |
| !! | ATGGGTTCTTTCAAGTTGTT+GGG | - | chr1.3:57397132-57397151 | MS.gene44010:CDS | 35.0% |
| !! | CACTGTGTTGTTGATTTCAA+CGG | - | chr1.3:57398805-57398824 | MS.gene44010:CDS | 35.0% |
| !!! | AGTTTTTTTGTGGTCCAGTT+TGG | + | chr1.3:57398006-57398025 | None:intergenic | 35.0% |
| !!! | GATTTTGTTGATGATGTCCT+TGG | - | chr1.3:57397204-57397223 | MS.gene44010:CDS | 35.0% |
| TATTGGGCATATTGTGGAGA+AGG | - | chr1.3:57398220-57398239 | MS.gene44010:CDS | 40.0% | |
| TCAAAAGCGGAAATATTGCG+AGG | + | chr1.3:57397795-57397814 | None:intergenic | 40.0% | |
| TCAACAACACAGTGATCCAA+TGG | + | chr1.3:57398799-57398818 | None:intergenic | 40.0% | |
| TCTCATGTTACTACTTCCCA+TGG | - | chr1.3:57397170-57397189 | MS.gene44010:CDS | 40.0% | |
| TTTCAACGGGTATGGTTATG+TGG | - | chr1.3:57398819-57398838 | MS.gene44010:CDS | 40.0% | |
| TTTGTGAAGAAGTGGAGTGT+GGG | - | chr1.3:57397427-57397446 | MS.gene44010:intron | 40.0% | |
| ! | GTCCAGTTTGGTTCAGTTTA+TGG | + | chr1.3:57397994-57398013 | None:intergenic | 40.0% |
| ! | GTGTGTATGTGTCTTGTTCT+TGG | + | chr1.3:57398254-57398273 | None:intergenic | 40.0% |
| !! | GTTGTTGATTTCAACGGGTA+TGG | - | chr1.3:57398811-57398830 | MS.gene44010:CDS | 40.0% |
| !! | TTGTTACCAACGGACTAATG+AGG | - | chr1.3:57398613-57398632 | MS.gene44010:intron | 40.0% |
| ACCATGACTCTCAACATCTC+CGG | + | chr1.3:57398512-57398531 | None:intergenic | 45.0% | |
| AGCTAGCTAGGATGCATAGA+TGG | - | chr1.3:57398842-57398861 | MS.gene44010:CDS | 45.0% | |
| ATGGTTATGTGGAGCTAGCT+AGG | - | chr1.3:57398830-57398849 | MS.gene44010:CDS | 45.0% | |
| CTTGAACCTCATTAGTCCGT+TGG | + | chr1.3:57398622-57398641 | None:intergenic | 45.0% | |
| GGATCTGATTGTTCCAGACT+TGG | - | chr1.3:57398466-57398485 | MS.gene44010:CDS | 45.0% | |
| GTTTGTGAAGAAGTGGAGTG+TGG | - | chr1.3:57397426-57397445 | MS.gene44010:intron | 45.0% | |
| TTGCGAGGTAAAGTCTTCTC+TGG | + | chr1.3:57397780-57397799 | None:intergenic | 45.0% | |
| TTTGTGAATGCGATTCTGGC+TGG | - | chr1.3:57397493-57397512 | MS.gene44010:CDS | 45.0% | |
| ! | ACTAGGGGTGTGCAAAAATG+TGG | - | chr1.3:57397953-57397972 | MS.gene44010:intron | 45.0% |
| ! | CAAGCTCAATCTTTGGAGGA+AGG | - | chr1.3:57398771-57398790 | MS.gene44010:intron | 45.0% |
| ! | CTCCAAAGATTGAGCTTGCT+GGG | + | chr1.3:57398769-57398788 | None:intergenic | 45.0% |
| ! | GTTGTTGGGTCTTATAGCCA+TGG | - | chr1.3:57397146-57397165 | MS.gene44010:CDS | 45.0% |
| ! | TCTTTGGAGGAAGGTTCCAT+TGG | - | chr1.3:57398780-57398799 | MS.gene44010:intron | 45.0% |
| !! | AAAGTCTTCTCTGGAACTGG+AGG | + | chr1.3:57397771-57397790 | None:intergenic | 45.0% |
| !! | GCTTGCTATTGGGCATATTG+TGG | - | chr1.3:57398214-57398233 | MS.gene44010:CDS | 45.0% |
| !! | GGTAAAGTCTTCTCTGGAAC+TGG | + | chr1.3:57397774-57397793 | None:intergenic | 45.0% |
| !! | TCCAAAGATTGAGCTTGCTG+GGG | + | chr1.3:57398768-57398787 | None:intergenic | 45.0% |
| !! | AAATAAATATATAAGAATTA+AGG | - | chr1.3:57397634-57397653 | MS.gene44010:intron | 5.0% |
| AAAATCCCCTTTGGCAGCCA+TGG | + | chr1.3:57397190-57397209 | None:intergenic | 50.0% | |
| AAATCCCCTTTGGCAGCCAT+GGG | + | chr1.3:57397189-57397208 | None:intergenic | 50.0% | |
| ACCGGAGATGTTGAGAGTCA+TGG | - | chr1.3:57398508-57398527 | MS.gene44010:CDS | 50.0% | |
| CCAGCAAGCTCAATCTTTGG+AGG | - | chr1.3:57398767-57398786 | MS.gene44010:intron | 50.0% | |
| CCTCCAAAGATTGAGCTTGC+TGG | + | chr1.3:57398770-57398789 | None:intergenic | 50.0% | |
| GAAGAAGTGGAGTGTGGGAA+AGG | - | chr1.3:57397432-57397451 | MS.gene44010:intron | 50.0% | |
| GTGTGGGAAAGGAAACTGTG+TGG | - | chr1.3:57397443-57397462 | MS.gene44010:intron | 50.0% | |
| TACTTCCCATGGCTGCCAAA+GGG | - | chr1.3:57397181-57397200 | MS.gene44010:CDS | 50.0% | |
| TCCCCAGCAAGCTCAATCTT+TGG | - | chr1.3:57398764-57398783 | MS.gene44010:intron | 50.0% | |
| ACTTCCCATGGCTGCCAAAG+GGG | - | chr1.3:57397182-57397201 | MS.gene44010:CDS | 55.0% | |
| CTACTTCCCATGGCTGCCAA+AGG | - | chr1.3:57397180-57397199 | MS.gene44010:CDS | 55.0% | |
| !! | GTCTTCTCTGGAACTGGAGG+AGG | + | chr1.3:57397768-57397787 | None:intergenic | 55.0% |
| ! | TCTGGAACTGGAGGAGGTGC+TGG | + | chr1.3:57397762-57397781 | None:intergenic | 60.0% |
| !! | GAACTGGAGGAGGTGCTGGT+TGG | + | chr1.3:57397758-57397777 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 57397132 | 57398882 | 57397132 | ID=MS.gene44010 |
| chr1.3 | mRNA | 57397132 | 57398882 | 57397132 | ID=MS.gene44010.t1;Parent=MS.gene44010 |
| chr1.3 | exon | 57398789 | 57398882 | 57398789 | ID=MS.gene44010.t1.exon1;Parent=MS.gene44010.t1 |
| chr1.3 | CDS | 57398789 | 57398882 | 57398789 | ID=cds.MS.gene44010.t1;Parent=MS.gene44010.t1 |
| chr1.3 | exon | 57398432 | 57398593 | 57398432 | ID=MS.gene44010.t1.exon2;Parent=MS.gene44010.t1 |
| chr1.3 | CDS | 57398432 | 57398593 | 57398432 | ID=cds.MS.gene44010.t1;Parent=MS.gene44010.t1 |
| chr1.3 | exon | 57398198 | 57398278 | 57398198 | ID=MS.gene44010.t1.exon3;Parent=MS.gene44010.t1 |
| chr1.3 | CDS | 57398198 | 57398278 | 57398198 | ID=cds.MS.gene44010.t1;Parent=MS.gene44010.t1 |
| chr1.3 | exon | 57397674 | 57397799 | 57397674 | ID=MS.gene44010.t1.exon4;Parent=MS.gene44010.t1 |
| chr1.3 | CDS | 57397674 | 57397799 | 57397674 | ID=cds.MS.gene44010.t1;Parent=MS.gene44010.t1 |
| chr1.3 | exon | 57397485 | 57397556 | 57397485 | ID=MS.gene44010.t1.exon5;Parent=MS.gene44010.t1 |
| chr1.3 | CDS | 57397485 | 57397556 | 57397485 | ID=cds.MS.gene44010.t1;Parent=MS.gene44010.t1 |
| chr1.3 | exon | 57397132 | 57397292 | 57397132 | ID=MS.gene44010.t1.exon6;Parent=MS.gene44010.t1 |
| chr1.3 | CDS | 57397132 | 57397292 | 57397132 | ID=cds.MS.gene44010.t1;Parent=MS.gene44010.t1 |
| Gene Sequence |
| Protein sequence |
