Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44033.t1 | XP_003591035.2 | 88.2 | 323 | 38 | 0 | 1 | 323 | 1 | 323 | 3.00E-159 | 571.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44033.t1 | Q43317 | 73.2 | 317 | 85 | 0 | 7 | 323 | 8 | 324 | 5.9e-132 | 471.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44033.t1 | G7I7F0 | 88.2 | 323 | 38 | 0 | 1 | 323 | 1 | 323 | 2.1e-159 | 571.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052982 | MS.gene44033 | 0.825625 | 4.23E-54 | -1.69E-46 |
| MS.gene05412 | MS.gene44033 | 0.82406 | 9.90E-54 | -1.69E-46 |
| MS.gene054183 | MS.gene44033 | 0.801775 | 7.68E-49 | -1.69E-46 |
| MS.gene055369 | MS.gene44033 | 0.801727 | 7.85E-49 | -1.69E-46 |
| MS.gene05594 | MS.gene44033 | 0.811827 | 5.76E-51 | -1.69E-46 |
| MS.gene056497 | MS.gene44033 | 0.851864 | 6.72E-61 | -1.69E-46 |
| MS.gene056514 | MS.gene44033 | 0.816901 | 4.35E-52 | -1.69E-46 |
| MS.gene057124 | MS.gene44033 | 0.800058 | 1.72E-48 | -1.69E-46 |
| MS.gene057823 | MS.gene44033 | 0.803948 | 2.73E-49 | -1.69E-46 |
| MS.gene057845 | MS.gene44033 | 0.811713 | 6.10E-51 | -1.69E-46 |
| MS.gene059420 | MS.gene44033 | 0.80504 | 1.62E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44033.t1 | MTR_1g081620 | 88.235 | 323 | 38 | 0 | 1 | 323 | 1 | 323 | 0.0 | 563 |
| MS.gene44033.t1 | MTR_1g081625 | 86.687 | 323 | 43 | 0 | 1 | 323 | 1 | 323 | 0.0 | 532 |
| MS.gene44033.t1 | MTR_1g081640 | 93.380 | 287 | 19 | 0 | 1 | 287 | 1 | 287 | 4.98e-179 | 498 |
| MS.gene44033.t1 | MTR_1g081610 | 72.050 | 322 | 90 | 0 | 2 | 323 | 3 | 324 | 7.73e-154 | 434 |
| MS.gene44033.t1 | MTR_5g006340 | 72.871 | 317 | 86 | 0 | 7 | 323 | 8 | 324 | 2.96e-152 | 430 |
| MS.gene44033.t1 | MTR_1g103690 | 70.717 | 321 | 94 | 0 | 3 | 323 | 4 | 324 | 6.47e-151 | 427 |
| MS.gene44033.t1 | MTR_4g087490 | 64.013 | 314 | 113 | 0 | 7 | 320 | 47 | 360 | 8.21e-149 | 423 |
| MS.gene44033.t1 | MTR_4g087510 | 60.191 | 314 | 116 | 2 | 7 | 320 | 47 | 351 | 3.86e-138 | 395 |
| MS.gene44033.t1 | MTR_7g078070 | 60.828 | 314 | 123 | 0 | 7 | 320 | 61 | 374 | 5.81e-135 | 388 |
| MS.gene44033.t1 | MTR_7g078070 | 60.586 | 307 | 121 | 0 | 14 | 320 | 8 | 314 | 2.62e-131 | 377 |
| MS.gene44033.t1 | MTR_7g087110 | 59.554 | 314 | 117 | 1 | 7 | 320 | 65 | 368 | 5.95e-119 | 347 |
| MS.gene44033.t1 | MTR_7g078070 | 59.643 | 280 | 113 | 0 | 41 | 320 | 2 | 281 | 1.29e-117 | 341 |
| MS.gene44033.t1 | MTR_4g087520 | 66.541 | 266 | 89 | 0 | 55 | 320 | 1 | 266 | 5.06e-111 | 323 |
| MS.gene44033.t1 | MTR_5g095670 | 29.745 | 353 | 189 | 6 | 11 | 306 | 48 | 398 | 2.08e-41 | 149 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44033.t1 | AT3G04940 | 70.533 | 319 | 94 | 0 | 2 | 320 | 3 | 321 | 6.69e-156 | 439 |
| MS.gene44033.t1 | AT3G04940 | 70.533 | 319 | 94 | 0 | 2 | 320 | 3 | 321 | 6.69e-156 | 439 |
| MS.gene44033.t1 | AT4G14880 | 69.716 | 317 | 96 | 0 | 7 | 323 | 5 | 321 | 1.87e-151 | 428 |
| MS.gene44033.t1 | AT4G14880 | 69.716 | 317 | 96 | 0 | 7 | 323 | 5 | 321 | 1.87e-151 | 428 |
| MS.gene44033.t1 | AT4G14880 | 69.716 | 317 | 96 | 0 | 7 | 323 | 5 | 321 | 1.87e-151 | 428 |
| MS.gene44033.t1 | AT4G14880 | 69.716 | 317 | 96 | 0 | 7 | 323 | 5 | 321 | 1.87e-151 | 428 |
| MS.gene44033.t1 | AT4G14880 | 69.716 | 317 | 96 | 0 | 7 | 323 | 5 | 321 | 1.87e-151 | 428 |
| MS.gene44033.t1 | AT2G43750 | 70.701 | 314 | 92 | 0 | 7 | 320 | 75 | 388 | 6.09e-149 | 424 |
| MS.gene44033.t1 | AT2G43750 | 70.701 | 314 | 92 | 0 | 7 | 320 | 75 | 388 | 6.09e-149 | 424 |
| MS.gene44033.t1 | AT5G28030 | 68.731 | 323 | 101 | 0 | 1 | 323 | 1 | 323 | 5.39e-146 | 414 |
| MS.gene44033.t1 | AT5G28030 | 68.731 | 323 | 101 | 0 | 1 | 323 | 1 | 323 | 5.39e-146 | 414 |
| MS.gene44033.t1 | AT5G28030 | 68.731 | 323 | 101 | 0 | 1 | 323 | 1 | 323 | 5.39e-146 | 414 |
| MS.gene44033.t1 | AT5G28030 | 68.731 | 323 | 101 | 0 | 1 | 323 | 1 | 323 | 5.39e-146 | 414 |
| MS.gene44033.t1 | AT3G59760 | 68.471 | 314 | 99 | 0 | 7 | 320 | 113 | 426 | 1.97e-145 | 417 |
| MS.gene44033.t1 | AT3G59760 | 68.471 | 314 | 99 | 0 | 7 | 320 | 113 | 426 | 2.54e-145 | 417 |
| MS.gene44033.t1 | AT5G28020 | 67.183 | 323 | 106 | 0 | 1 | 323 | 1 | 323 | 1.63e-144 | 410 |
| MS.gene44033.t1 | AT5G28020 | 67.183 | 323 | 106 | 0 | 1 | 323 | 1 | 323 | 1.63e-144 | 410 |
| MS.gene44033.t1 | AT5G28020 | 67.183 | 323 | 106 | 0 | 1 | 323 | 1 | 323 | 1.63e-144 | 410 |
| MS.gene44033.t1 | AT5G28020 | 67.183 | 323 | 106 | 0 | 1 | 323 | 1 | 323 | 1.63e-144 | 410 |
| MS.gene44033.t1 | AT5G28020 | 67.183 | 323 | 106 | 0 | 1 | 323 | 1 | 323 | 1.63e-144 | 410 |
| MS.gene44033.t1 | AT3G61440 | 58.786 | 313 | 129 | 0 | 8 | 320 | 50 | 362 | 2.31e-129 | 374 |
| MS.gene44033.t1 | AT3G59760 | 67.474 | 289 | 94 | 0 | 7 | 295 | 113 | 401 | 9.14e-128 | 372 |
| MS.gene44033.t1 | AT3G03630 | 59.021 | 327 | 118 | 2 | 2 | 322 | 88 | 404 | 9.36e-122 | 355 |
| MS.gene44033.t1 | AT3G22460 | 65.056 | 269 | 74 | 1 | 55 | 323 | 1 | 249 | 1.95e-118 | 342 |
| MS.gene44033.t1 | AT5G28030 | 68.400 | 250 | 79 | 0 | 1 | 250 | 1 | 250 | 2.53e-114 | 332 |
| MS.gene44033.t1 | AT3G61440 | 58.647 | 266 | 110 | 0 | 55 | 320 | 1 | 266 | 1.11e-106 | 312 |
| MS.gene44033.t1 | AT3G61440 | 56.654 | 263 | 114 | 0 | 8 | 270 | 50 | 312 | 2.80e-104 | 308 |
| MS.gene44033.t1 | AT5G28020 | 66.667 | 237 | 79 | 0 | 87 | 323 | 1 | 237 | 3.94e-96 | 284 |
| MS.gene44033.t1 | AT3G61440 | 58.333 | 240 | 100 | 0 | 81 | 320 | 2 | 241 | 2.16e-95 | 283 |
| MS.gene44033.t1 | AT3G22460 | 65.746 | 181 | 62 | 0 | 7 | 187 | 8 | 188 | 5.25e-87 | 259 |
| MS.gene44033.t1 | AT1G55880 | 28.650 | 363 | 199 | 7 | 2 | 306 | 35 | 395 | 4.64e-40 | 145 |
| MS.gene44033.t1 | AT1G55880 | 31.641 | 256 | 133 | 5 | 2 | 216 | 35 | 289 | 5.60e-34 | 127 |
Find 74 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTCATTGTGAAGTTAAT+AGG | 0.176383 | 1.3:+57638743 | MS.gene44033:intron |
| TGCTTTGAAAGAAGGTTTAC+TGG | 0.278057 | 1.3:+57640678 | MS.gene44033:CDS |
| AATCAGTAATATACCTTTGC+AGG | 0.289736 | 1.3:-57639029 | None:intergenic |
| TTGGTTGCTGGGATAGGAAC+TGG | 0.296502 | 1.3:+57639735 | MS.gene44033:CDS |
| AGACCACTGGCCCTGAGATT+TGG | 0.302016 | 1.3:+57639685 | MS.gene44033:CDS |
| TCTCCTAGATGAAGTTATTC+AGG | 0.311315 | 1.3:+57640196 | MS.gene44033:CDS |
| TGATTGAGCATATAGCTATT+AGG | 0.338381 | 1.3:-57639544 | None:intergenic |
| AGAATTGATGCTTTGGTTGC+TGG | 0.346107 | 1.3:+57639723 | MS.gene44033:CDS |
| AAAATTATACCGCGAGCTTT+CGG | 0.347588 | 1.3:+57639442 | MS.gene44033:CDS |
| CCAGTGTCTCTCCAAATCTC+AGG | 0.381632 | 1.3:-57639696 | None:intergenic |
| AATTCATTGTGAAGTTAATA+GGG | 0.388493 | 1.3:+57638744 | MS.gene44033:intron |
| TGGTTGCTGGGATAGGAACT+GGG | 0.404205 | 1.3:+57639736 | MS.gene44033:CDS |
| CTCTCAAGACTCACAAAAGA+TGG | 0.404289 | 1.3:-57639418 | None:intergenic |
| ATTGAAGATGCCGAAAATAA+AGG | 0.410624 | 1.3:+57638996 | MS.gene44033:CDS |
| TTGCAGATGGGAATTTCATC+AGG | 0.417954 | 1.3:+57640983 | MS.gene44033:intron |
| TTCTTCAGCTTCACGCCTGA+TGG | 0.420313 | 1.3:-57641278 | None:intergenic |
| TGGAGGGAGAATTGATGCTT+TGG | 0.420775 | 1.3:+57639716 | MS.gene44033:CDS |
| GAAAATACCTTTGGATTGAC+AGG | 0.427407 | 1.3:-57639577 | None:intergenic |
| GACCCTGCCAAAGGAGTTGA+TGG | 0.430929 | 1.3:+57639484 | MS.gene44033:CDS |
| AAGCTGCTTGCTTTGAAAGA+AGG | 0.434359 | 1.3:+57640670 | MS.gene44033:CDS |
| GACTGTTCTTGTTGAGGCTA+CGG | 0.435622 | 1.3:+57639327 | MS.gene44033:intron |
| GAATTGATGCTTTGGTTGCT+GGG | 0.447335 | 1.3:+57639724 | MS.gene44033:CDS |
| CCTGCTGCAGTATCAAAGAT+AGG | 0.456694 | 1.3:+57638846 | MS.gene44033:CDS |
| TTCAAAATTGCACTTTCAGT+TGG | 0.477799 | 1.3:-57639945 | None:intergenic |
| ACTCCATCAACTCCTTTGGC+AGG | 0.479455 | 1.3:-57639487 | None:intergenic |
| CCTATCTTTGATACTGCAGC+AGG | 0.480451 | 1.3:-57638846 | None:intergenic |
| GGAGAGAAACTTAGATATCA+AGG | 0.483692 | 1.3:+57639791 | MS.gene44033:CDS |
| CGACACCATTACCGATACCT+TGG | 0.483706 | 1.3:-57640151 | None:intergenic |
| ACTGTTCTTGTTGAGGCTAC+GGG | 0.484824 | 1.3:+57639328 | MS.gene44033:CDS |
| GCAACACTTTGCAATTAAGA+AGG | 0.485120 | 1.3:+57638607 | MS.gene44033:CDS |
| CATCTAGGAGATCAAGATCC+AGG | 0.490366 | 1.3:-57640184 | None:intergenic |
| CTACCTGAATAACTTCATCT+AGG | 0.491918 | 1.3:-57640199 | None:intergenic |
| CTAATCCAAGGTATCGGTAA+TGG | 0.499930 | 1.3:+57640146 | MS.gene44033:CDS |
| AATTTCCCGCCCTAGGTGTA+TGG | 0.501992 | 1.3:+57639915 | MS.gene44033:intron |
| GCAGCAGCTGCAATAAAACT+AGG | 0.508019 | 1.3:+57641013 | MS.gene44033:CDS |
| TGGCAACACCGGCATAGGAT+TGG | 0.508149 | 1.3:+57639351 | MS.gene44033:CDS |
| AAGTAACGCTCTCCAAAACT+AGG | 0.515786 | 1.3:-57641235 | None:intergenic |
| GAGGCTACGGGTGGCAACAC+CGG | 0.516683 | 1.3:+57639340 | MS.gene44033:CDS |
| TATAAAGACTGTTCTTGTTG+AGG | 0.526664 | 1.3:+57639321 | MS.gene44033:intron |
| TAGACTCATTATGAGACCAC+TGG | 0.531764 | 1.3:+57639672 | MS.gene44033:intron |
| ACGGGTGGCAACACCGGCAT+AGG | 0.532817 | 1.3:+57639346 | MS.gene44033:CDS |
| GATGCTTTGGTTGCTGGGAT+AGG | 0.540985 | 1.3:+57639729 | MS.gene44033:CDS |
| AGGAGATCAAGATCCAGGAC+AGG | 0.551186 | 1.3:-57640179 | None:intergenic |
| TCTCCAAATCTCAGGGCCAG+TGG | 0.561794 | 1.3:-57639688 | None:intergenic |
| TATTTAAACAACATTACAGA+AGG | 0.572300 | 1.3:+57638782 | MS.gene44033:CDS |
| GGGAAGAGACAAGAAAATGC+AGG | 0.574537 | 1.3:+57641034 | MS.gene44033:CDS |
| CAGCAGCTGCAATAAAACTA+GGG | 0.584186 | 1.3:+57641014 | MS.gene44033:CDS |
| TATCTAAGTTTCTCTCCTTG+AGG | 0.585770 | 1.3:-57639785 | None:intergenic |
| CAGTGTCTCTCCAAATCTCA+GGG | 0.596061 | 1.3:-57639695 | None:intergenic |
| CCTGAGATTTGGAGAGACAC+TGG | 0.596193 | 1.3:+57639696 | MS.gene44033:CDS |
| CTCCATCAACTCCTTTGGCA+GGG | 0.596937 | 1.3:-57639486 | None:intergenic |
| GTTAATAGGGAACACACCAT+TGG | 0.598353 | 1.3:+57638757 | MS.gene44033:intron |
| AAAGGCGAACATCTAATCCA+AGG | 0.601059 | 1.3:+57640134 | MS.gene44033:intron |
| GAACATCTAATCCAAGGTAT+CGG | 0.603211 | 1.3:+57640140 | MS.gene44033:CDS |
| AGGTCTCATTACTCCTGCAA+AGG | 0.603893 | 1.3:+57639016 | MS.gene44033:CDS |
| TGAAAATCCTGTCAATCCAA+AGG | 0.608161 | 1.3:+57639570 | MS.gene44033:CDS |
| GATCGATGCCAATCCTATGC+CGG | 0.608438 | 1.3:-57639359 | None:intergenic |
| ACCGCGAGCTTTCGGAGCCG+AGG | 0.609695 | 1.3:+57639450 | MS.gene44033:CDS |
| GGGGAACAATAACAGGTGCT+GGG | 0.617812 | 1.3:+57639757 | MS.gene44033:CDS |
| GGAGATCAAGATCCAGGACA+GGG | 0.624998 | 1.3:-57640178 | None:intergenic |
| ACCTCGGCTCCGAAAGCTCG+CGG | 0.637489 | 1.3:-57639451 | None:intergenic |
| AGGGTCTGTCAGATATACCT+CGG | 0.637839 | 1.3:-57639467 | None:intergenic |
| GTTCTTGTTGAGGCTACGGG+TGG | 0.643495 | 1.3:+57639331 | MS.gene44033:CDS |
| AGATTTGGAGAGACACTGGA+GGG | 0.656101 | 1.3:+57639700 | MS.gene44033:CDS |
| ATGTTGTTTAAATATACCAA+TGG | 0.656492 | 1.3:-57638773 | None:intergenic |
| ATTTAAACAACATTACAGAA+GGG | 0.658178 | 1.3:+57638783 | MS.gene44033:CDS |
| AGATCAAGATCCAGGACAGG+GGG | 0.659611 | 1.3:-57640176 | None:intergenic |
| GGTTGCTGGGATAGGAACTG+GGG | 0.659862 | 1.3:+57639737 | MS.gene44033:CDS |
| TATCTGACAGACCCTGCCAA+AGG | 0.659992 | 1.3:+57639475 | MS.gene44033:CDS |
| GAGATTTGGAGAGACACTGG+AGG | 0.660104 | 1.3:+57639699 | MS.gene44033:CDS |
| AGGTGCTGGGAAGTTCCTCA+AGG | 0.662577 | 1.3:+57639770 | MS.gene44033:CDS |
| GCATCGATCGCAGCACTGAG+AGG | 0.674732 | 1.3:+57639373 | MS.gene44033:CDS |
| GAGATCAAGATCCAGGACAG+GGG | 0.676210 | 1.3:-57640177 | None:intergenic |
| GTTGCTGGGATAGGAACTGG+GGG | 0.715548 | 1.3:+57639738 | MS.gene44033:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTAATAATATTTGAGTAA+TGG | + | chr1.3:57640808-57640827 | MS.gene44033:intron | 15.0% |
| !! | TTATATAACAAATAACTGAA+GGG | - | chr1.3:57640753-57640772 | None:intergenic | 15.0% |
| !! | TTTATATAACAAATAACTGA+AGG | - | chr1.3:57640754-57640773 | None:intergenic | 15.0% |
| !! | AATTCATTGTGAAGTTAATA+GGG | + | chr1.3:57638744-57638763 | MS.gene44033:intron | 20.0% |
| !! | AGAAATAAAATTTCTAACAC+TGG | + | chr1.3:57639171-57639190 | MS.gene44033:intron | 20.0% |
| !! | AGAAATTAATCATAAGTTTC+TGG | - | chr1.3:57640270-57640289 | None:intergenic | 20.0% |
| !! | ATAATTCATATTGCCTAATT+TGG | + | chr1.3:57639600-57639619 | MS.gene44033:intron | 20.0% |
| !! | ATCTTTCATTCTTAAAAGTT+AGG | + | chr1.3:57640540-57640559 | MS.gene44033:intron | 20.0% |
| !! | ATGAATTATGAAAATACCTT+TGG | - | chr1.3:57639589-57639608 | None:intergenic | 20.0% |
| !! | ATTTAAACAACATTACAGAA+GGG | + | chr1.3:57638783-57638802 | MS.gene44033:CDS | 20.0% |
| !! | GAAAAGTAATTAGAGTTTAA+CGG | - | chr1.3:57640941-57640960 | None:intergenic | 20.0% |
| !! | TATTTAAACAACATTACAGA+AGG | + | chr1.3:57638782-57638801 | MS.gene44033:CDS | 20.0% |
| !! | TCTTTCATTCTTAAAAGTTA+GGG | + | chr1.3:57640541-57640560 | MS.gene44033:intron | 20.0% |
| !!! | ATGTTGTTTAAATATACCAA+TGG | - | chr1.3:57638776-57638795 | None:intergenic | 20.0% |
| !!! | ATTAATCAAGTTTGATAACT+AGG | + | chr1.3:57639049-57639068 | MS.gene44033:intron | 20.0% |
| !!! | GAAATTTTATTTCTAAGTCT+TGG | - | chr1.3:57639165-57639184 | None:intergenic | 20.0% |
| !!! | TAAATTTTTTGTAGTACCAA+TGG | - | chr1.3:57640840-57640859 | None:intergenic | 20.0% |
| !!! | TAATATTTGAGTAATGGATA+TGG | + | chr1.3:57640814-57640833 | MS.gene44033:intron | 20.0% |
| ! | AACATGAACAATACTATATG+TGG | - | chr1.3:57639254-57639273 | None:intergenic | 25.0% |
| ! | AATAGTAAAGAGCTACATTT+AGG | - | chr1.3:57640375-57640394 | None:intergenic | 25.0% |
| ! | ATAGACTTCAACATTATAAG+CGG | - | chr1.3:57639223-57639242 | None:intergenic | 25.0% |
| ! | ATATAGTATTGTTCATGTTG+TGG | + | chr1.3:57639255-57639274 | MS.gene44033:intron | 25.0% |
| ! | ATTAACAAGATGCATATTTG+CGG | - | chr1.3:57640795-57640814 | None:intergenic | 25.0% |
| ! | CAATTCATTGTGAAGTTAAT+AGG | + | chr1.3:57638743-57638762 | MS.gene44033:intron | 25.0% |
| ! | GTAACATAAAAGTGACATTA+TGG | - | chr1.3:57640886-57640905 | None:intergenic | 25.0% |
| !! | TAACTTGTGATTCTTGTTAT+TGG | + | chr1.3:57640713-57640732 | MS.gene44033:intron | 25.0% |
| !!! | AACTTTAGTTTGTGATATAG+AGG | - | chr1.3:57638881-57638900 | None:intergenic | 25.0% |
| !!! | AGTAATGAGACCTTTATTTT+CGG | - | chr1.3:57639009-57639028 | None:intergenic | 25.0% |
| AATCAGTAATATACCTTTGC+AGG | - | chr1.3:57639032-57639051 | None:intergenic | 30.0% | |
| ACAGTGAAGATATAAAAGAG+AGG | - | chr1.3:57638678-57638697 | None:intergenic | 30.0% | |
| ACATTATGGTGAGATATGAT+TGG | - | chr1.3:57640872-57640891 | None:intergenic | 30.0% | |
| ATTGAAGATGCCGAAAATAA+AGG | + | chr1.3:57638996-57639015 | MS.gene44033:CDS | 30.0% | |
| ATTTGCGGTTATATATTTGC+AGG | - | chr1.3:57640780-57640799 | None:intergenic | 30.0% | |
| CAAGCATATTGTTCTTACTT+AGG | - | chr1.3:57640295-57640314 | None:intergenic | 30.0% | |
| CAGTGAAGATATAAAAGAGA+GGG | - | chr1.3:57638677-57638696 | None:intergenic | 30.0% | |
| CCTATCAAATCAACCAAATT+AGG | - | chr1.3:57639616-57639635 | None:intergenic | 30.0% | |
| TATAAAGACTGTTCTTGTTG+AGG | + | chr1.3:57639321-57639340 | MS.gene44033:intron | 30.0% | |
| TATAATATATGTGCATGACC+TGG | - | chr1.3:57640473-57640492 | None:intergenic | 30.0% | |
| TATAGTTCACAAAACCTTGT+TGG | - | chr1.3:57640619-57640638 | None:intergenic | 30.0% | |
| TCCATTTGAACACATTTCAA+AGG | + | chr1.3:57640116-57640135 | MS.gene44033:intron | 30.0% | |
| TGATTGAGCATATAGCTATT+AGG | - | chr1.3:57639547-57639566 | None:intergenic | 30.0% | |
| TTCAAAATTGCACTTTCAGT+TGG | - | chr1.3:57639948-57639967 | None:intergenic | 30.0% | |
| TTCAGAATAGTAAAATCACC+TGG | - | chr1.3:57639981-57640000 | None:intergenic | 30.0% | |
| TTTGCGGTTATATATTTGCA+GGG | - | chr1.3:57640779-57640798 | None:intergenic | 30.0% | |
| ! | TGAACTTTTGAACTGATACT+TGG | + | chr1.3:57640316-57640335 | MS.gene44033:intron | 30.0% |
| !! | AACAAGGTTTTGTGAACTAT+AGG | + | chr1.3:57640618-57640637 | MS.gene44033:intron | 30.0% |
| !! | ACAAGTTTTATGTATGAGTC+CGG | - | chr1.3:57639084-57639103 | None:intergenic | 30.0% |
| !! | ACTGAAAGTGCAATTTTGAA+TGG | + | chr1.3:57639948-57639967 | MS.gene44033:CDS | 30.0% |
| !! | CCTAATTTGGTTGATTTGAT+AGG | + | chr1.3:57639613-57639632 | MS.gene44033:intron | 30.0% |
| !!! | AGTTGATGGAGTTTTTGAAA+AGG | + | chr1.3:57639498-57639517 | MS.gene44033:CDS | 30.0% |
| !!! | GACATTTTTTGTATGACATC+AGG | - | chr1.3:57640026-57640045 | None:intergenic | 30.0% |
| !!! | TAATCTTGTTTTTCTCACTC+AGG | + | chr1.3:57638958-57638977 | MS.gene44033:intron | 30.0% |
| AAAAACTCCATCAACTCCTT+TGG | - | chr1.3:57639494-57639513 | None:intergenic | 35.0% | |
| AAAATTATACCGCGAGCTTT+CGG | + | chr1.3:57639442-57639461 | MS.gene44033:CDS | 35.0% | |
| AATCAATTAACGACCTCAAC+TGG | - | chr1.3:57640090-57640109 | None:intergenic | 35.0% | |
| AATTCTTAGACAACCAGTTG+AGG | + | chr1.3:57640074-57640093 | MS.gene44033:intron | 35.0% | |
| ACCTTGTATACTTTCTGTGT+TGG | + | chr1.3:57639825-57639844 | MS.gene44033:intron | 35.0% | |
| AGCTTGCAACACTAATAAAC+TGG | + | chr1.3:57640220-57640239 | MS.gene44033:intron | 35.0% | |
| CCTTGTATACTTTCTGTGTT+GGG | + | chr1.3:57639826-57639845 | MS.gene44033:intron | 35.0% | |
| CTACCTGAATAACTTCATCT+AGG | - | chr1.3:57640202-57640221 | None:intergenic | 35.0% | |
| GAAAATACCTTTGGATTGAC+AGG | - | chr1.3:57639580-57639599 | None:intergenic | 35.0% | |
| GAACATCTAATCCAAGGTAT+CGG | + | chr1.3:57640140-57640159 | MS.gene44033:CDS | 35.0% | |
| GCAACACTTTGCAATTAAGA+AGG | + | chr1.3:57638607-57638626 | MS.gene44033:CDS | 35.0% | |
| GGAGAGAAACTTAGATATCA+AGG | + | chr1.3:57639791-57639810 | MS.gene44033:CDS | 35.0% | |
| TATCTAAGTTTCTCTCCTTG+AGG | - | chr1.3:57639788-57639807 | None:intergenic | 35.0% | |
| TCTCCTAGATGAAGTTATTC+AGG | + | chr1.3:57640196-57640215 | MS.gene44033:CDS | 35.0% | |
| TGAAAATCCTGTCAATCCAA+AGG | + | chr1.3:57639570-57639589 | MS.gene44033:CDS | 35.0% | |
| TGAGATATGATTGGATGACA+GGG | - | chr1.3:57640863-57640882 | None:intergenic | 35.0% | |
| TTGAGTTACATAGTGACATG+AGG | + | chr1.3:57640500-57640519 | MS.gene44033:intron | 35.0% | |
| ! | ATGTGAATGTCTTTTGCAGA+TGG | + | chr1.3:57640970-57640989 | MS.gene44033:intron | 35.0% |
| ! | GACAAAGCTTTGTCAAGATT+TGG | - | chr1.3:57640447-57640466 | None:intergenic | 35.0% |
| ! | GATAACTAGGTTTTCTTTCC+CGG | + | chr1.3:57639062-57639081 | MS.gene44033:intron | 35.0% |
| ! | TGTGAATGTCTTTTGCAGAT+GGG | + | chr1.3:57640971-57640990 | MS.gene44033:intron | 35.0% |
| !! | ATACTAGCTCTGCAAATACA+AGG | + | chr1.3:57640580-57640599 | MS.gene44033:intron | 35.0% |
| !! | CAAGTTTTATGTATGAGTCC+GGG | - | chr1.3:57639083-57639102 | None:intergenic | 35.0% |
| !! | GAAAGTGCAATTTTGAATGG+AGG | + | chr1.3:57639951-57639970 | MS.gene44033:CDS | 35.0% |
| !! | GCCTTTGAAATGTGTTCAAA+TGG | - | chr1.3:57640120-57640139 | None:intergenic | 35.0% |
| !! | TACTAGCTCTGCAAATACAA+GGG | + | chr1.3:57640581-57640600 | MS.gene44033:intron | 35.0% |
| !! | TGCTTTGAAAGAAGGTTTAC+TGG | + | chr1.3:57640678-57640697 | MS.gene44033:CDS | 35.0% |
| AAAGGCGAACATCTAATCCA+AGG | + | chr1.3:57640134-57640153 | MS.gene44033:intron | 40.0% | |
| AAGTAACGCTCTCCAAAACT+AGG | - | chr1.3:57641238-57641257 | None:intergenic | 40.0% | |
| AGAATTGATGCTTTGGTTGC+TGG | + | chr1.3:57639723-57639742 | MS.gene44033:CDS | 40.0% | |
| ATTGCAAATCGTTGTTGTGC+AGG | + | chr1.3:57641204-57641223 | MS.gene44033:intron | 40.0% | |
| CAGCAGCTGCAATAAAACTA+GGG | + | chr1.3:57641014-57641033 | MS.gene44033:CDS | 40.0% | |
| CTCTCAAGACTCACAAAAGA+TGG | - | chr1.3:57639421-57639440 | None:intergenic | 40.0% | |
| GAATTGATGCTTTGGTTGCT+GGG | + | chr1.3:57639724-57639743 | MS.gene44033:CDS | 40.0% | |
| GTGAGATATGATTGGATGAC+AGG | - | chr1.3:57640864-57640883 | None:intergenic | 40.0% | |
| GTTAATAGGGAACACACCAT+TGG | + | chr1.3:57638757-57638776 | MS.gene44033:intron | 40.0% | |
| TAGACTCATTATGAGACCAC+TGG | + | chr1.3:57639672-57639691 | MS.gene44033:intron | 40.0% | |
| TGCGTCGAACAAACATACTA+AGG | - | chr1.3:57641086-57641105 | None:intergenic | 40.0% | |
| TTGCAGATGGGAATTTCATC+AGG | + | chr1.3:57640983-57641002 | MS.gene44033:intron | 40.0% | |
| ! | ATTTTGAATGGAGGAAAGCC+AGG | + | chr1.3:57639960-57639979 | MS.gene44033:CDS | 40.0% |
| ! | CAGGTGGTTTTTCCTAGTTT+TGG | + | chr1.3:57641223-57641242 | MS.gene44033:intron | 40.0% |
| ! | CCCAACACAGAAAGTATACA+AGG | - | chr1.3:57639829-57639848 | None:intergenic | 40.0% |
| !! | AAGCTGCTTGCTTTGAAAGA+AGG | + | chr1.3:57640670-57640689 | MS.gene44033:CDS | 40.0% |
| !! | CTAATCCAAGGTATCGGTAA+TGG | + | chr1.3:57640146-57640165 | MS.gene44033:CDS | 40.0% |
| !! | TGAGTAATGGATATGGCCAT+TGG | + | chr1.3:57640821-57640840 | MS.gene44033:intron | 40.0% |
| !!! | CACCACTTTTTGAATCCATC+AGG | + | chr1.3:57641263-57641282 | MS.gene44033:CDS | 40.0% |
| !!! | GGATTCTGTTTTGACCAACA+AGG | + | chr1.3:57640602-57640621 | MS.gene44033:intron | 40.0% |
| ACTGTTCTTGTTGAGGCTAC+GGG | + | chr1.3:57639328-57639347 | MS.gene44033:CDS | 45.0% | |
| AGATTTGGAGAGACACTGGA+GGG | + | chr1.3:57639700-57639719 | MS.gene44033:CDS | 45.0% | |
| AGGGTCTGTCAGATATACCT+CGG | - | chr1.3:57639470-57639489 | None:intergenic | 45.0% | |
| AGGTCTCATTACTCCTGCAA+AGG | + | chr1.3:57639016-57639035 | MS.gene44033:CDS | 45.0% | |
| CAGTGTCTCTCCAAATCTCA+GGG | - | chr1.3:57639698-57639717 | None:intergenic | 45.0% | |
| CATCTAGGAGATCAAGATCC+AGG | - | chr1.3:57640187-57640206 | None:intergenic | 45.0% | |
| CCTATCTTTGATACTGCAGC+AGG | - | chr1.3:57638849-57638868 | None:intergenic | 45.0% | |
| CCTGCTGCAGTATCAAAGAT+AGG | + | chr1.3:57638846-57638865 | MS.gene44033:CDS | 45.0% | |
| CTATGTAAATTTCCCGCCCT+AGG | + | chr1.3:57639908-57639927 | MS.gene44033:intron | 45.0% | |
| GACTGTTCTTGTTGAGGCTA+CGG | + | chr1.3:57639327-57639346 | MS.gene44033:intron | 45.0% | |
| GCAGCAGCTGCAATAAAACT+AGG | + | chr1.3:57641013-57641032 | MS.gene44033:CDS | 45.0% | |
| GGGAAGAGACAAGAAAATGC+AGG | + | chr1.3:57641034-57641053 | MS.gene44033:CDS | 45.0% | |
| GGTTCTACACCATACACCTA+GGG | - | chr1.3:57639927-57639946 | None:intergenic | 45.0% | |
| TGGAGGGAGAATTGATGCTT+TGG | + | chr1.3:57639716-57639735 | MS.gene44033:CDS | 45.0% | |
| ! | TGACAAAGCTTTGTCTCACC+AGG | + | chr1.3:57640452-57640471 | MS.gene44033:intron | 45.0% |
| ! | TGGTTCTACACCATACACCT+AGG | - | chr1.3:57639928-57639947 | None:intergenic | 45.0% |
| !! | CGCCTGATGGATTCAAAAAG+TGG | - | chr1.3:57641268-57641287 | None:intergenic | 45.0% |
| AATTTCCCGCCCTAGGTGTA+TGG | + | chr1.3:57639915-57639934 | MS.gene44033:intron | 50.0% | |
| ACTCCATCAACTCCTTTGGC+AGG | - | chr1.3:57639490-57639509 | None:intergenic | 50.0% | |
| AGATCAAGATCCAGGACAGG+GGG | - | chr1.3:57640179-57640198 | None:intergenic | 50.0% | |
| AGGAGATCAAGATCCAGGAC+AGG | - | chr1.3:57640182-57640201 | None:intergenic | 50.0% | |
| CCAGTGTCTCTCCAAATCTC+AGG | - | chr1.3:57639699-57639718 | None:intergenic | 50.0% | |
| CCTGAGATTTGGAGAGACAC+TGG | + | chr1.3:57639696-57639715 | MS.gene44033:CDS | 50.0% | |
| CGACACCATTACCGATACCT+TGG | - | chr1.3:57640154-57640173 | None:intergenic | 50.0% | |
| CTCCATCAACTCCTTTGGCA+GGG | - | chr1.3:57639489-57639508 | None:intergenic | 50.0% | |
| GAGATCAAGATCCAGGACAG+GGG | - | chr1.3:57640180-57640199 | None:intergenic | 50.0% | |
| GAGATTTGGAGAGACACTGG+AGG | + | chr1.3:57639699-57639718 | MS.gene44033:CDS | 50.0% | |
| GATCGATGCCAATCCTATGC+CGG | - | chr1.3:57639362-57639381 | None:intergenic | 50.0% | |
| GATGCTTTGGTTGCTGGGAT+AGG | + | chr1.3:57639729-57639748 | MS.gene44033:CDS | 50.0% | |
| GCAAATCGTTGTTGTGCAGG+TGG | + | chr1.3:57641207-57641226 | MS.gene44033:intron | 50.0% | |
| GGAACTGGGGGAACAATAAC+AGG | + | chr1.3:57639750-57639769 | MS.gene44033:CDS | 50.0% | |
| GGAGATCAAGATCCAGGACA+GGG | - | chr1.3:57640181-57640200 | None:intergenic | 50.0% | |
| GGGGAACAATAACAGGTGCT+GGG | + | chr1.3:57639757-57639776 | MS.gene44033:CDS | 50.0% | |
| TATCTGACAGACCCTGCCAA+AGG | + | chr1.3:57639475-57639494 | MS.gene44033:CDS | 50.0% | |
| TCTACACCATACACCTAGGG+CGG | - | chr1.3:57639924-57639943 | None:intergenic | 50.0% | |
| TGGTTGCTGGGATAGGAACT+GGG | + | chr1.3:57639736-57639755 | MS.gene44033:CDS | 50.0% | |
| TTCTTCAGCTTCACGCCTGA+TGG | - | chr1.3:57641281-57641300 | None:intergenic | 50.0% | |
| TTGGTTGCTGGGATAGGAAC+TGG | + | chr1.3:57639735-57639754 | MS.gene44033:CDS | 50.0% | |
| AGACCACTGGCCCTGAGATT+TGG | + | chr1.3:57639685-57639704 | MS.gene44033:CDS | 55.0% | |
| CTACACCATACACCTAGGGC+GGG | - | chr1.3:57639923-57639942 | None:intergenic | 55.0% | |
| GACCCTGCCAAAGGAGTTGA+TGG | + | chr1.3:57639484-57639503 | MS.gene44033:CDS | 55.0% | |
| GGGGGAACAATAACAGGTGC+TGG | + | chr1.3:57639756-57639775 | MS.gene44033:CDS | 55.0% | |
| GGTTGCTGGGATAGGAACTG+GGG | + | chr1.3:57639737-57639756 | MS.gene44033:CDS | 55.0% | |
| GTTCTTGTTGAGGCTACGGG+TGG | + | chr1.3:57639331-57639350 | MS.gene44033:CDS | 55.0% | |
| GTTGCTGGGATAGGAACTGG+GGG | + | chr1.3:57639738-57639757 | MS.gene44033:CDS | 55.0% | |
| TCTCCAAATCTCAGGGCCAG+TGG | - | chr1.3:57639691-57639710 | None:intergenic | 55.0% | |
| TGGCAACACCGGCATAGGAT+TGG | + | chr1.3:57639351-57639370 | MS.gene44033:CDS | 55.0% | |
| !! | AGGTGCTGGGAAGTTCCTCA+AGG | + | chr1.3:57639770-57639789 | MS.gene44033:CDS | 55.0% |
| ! | GCATCGATCGCAGCACTGAG+AGG | + | chr1.3:57639373-57639392 | MS.gene44033:CDS | 60.0% |
| ACCTCGGCTCCGAAAGCTCG+CGG | - | chr1.3:57639454-57639473 | None:intergenic | 65.0% | |
| ACGGGTGGCAACACCGGCAT+AGG | + | chr1.3:57639346-57639365 | MS.gene44033:CDS | 65.0% | |
| GAGGCTACGGGTGGCAACAC+CGG | + | chr1.3:57639340-57639359 | MS.gene44033:CDS | 65.0% | |
| !! | TGGTGTCGTTCCCCCTGTCC+TGG | + | chr1.3:57640166-57640185 | MS.gene44033:CDS | 65.0% |
| ACCGCGAGCTTTCGGAGCCG+AGG | + | chr1.3:57639450-57639469 | MS.gene44033:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 57638602 | 57641315 | 57638602 | ID=MS.gene44033 |
| chr1.3 | mRNA | 57638602 | 57641315 | 57638602 | ID=MS.gene44033.t1;Parent=MS.gene44033 |
| chr1.3 | exon | 57638602 | 57638640 | 57638602 | ID=MS.gene44033.t1.exon1;Parent=MS.gene44033.t1 |
| chr1.3 | CDS | 57638602 | 57638640 | 57638602 | ID=cds.MS.gene44033.t1;Parent=MS.gene44033.t1 |
| chr1.3 | exon | 57638758 | 57638867 | 57638758 | ID=MS.gene44033.t1.exon2;Parent=MS.gene44033.t1 |
| chr1.3 | CDS | 57638758 | 57638867 | 57638758 | ID=cds.MS.gene44033.t1;Parent=MS.gene44033.t1 |
| chr1.3 | exon | 57638980 | 57639037 | 57638980 | ID=MS.gene44033.t1.exon3;Parent=MS.gene44033.t1 |
| chr1.3 | CDS | 57638980 | 57639037 | 57638980 | ID=cds.MS.gene44033.t1;Parent=MS.gene44033.t1 |
| chr1.3 | exon | 57639328 | 57639591 | 57639328 | ID=MS.gene44033.t1.exon4;Parent=MS.gene44033.t1 |
| chr1.3 | CDS | 57639328 | 57639591 | 57639328 | ID=cds.MS.gene44033.t1;Parent=MS.gene44033.t1 |
| chr1.3 | exon | 57639675 | 57639812 | 57639675 | ID=MS.gene44033.t1.exon5;Parent=MS.gene44033.t1 |
| chr1.3 | CDS | 57639675 | 57639812 | 57639675 | ID=cds.MS.gene44033.t1;Parent=MS.gene44033.t1 |
| chr1.3 | exon | 57639930 | 57639981 | 57639930 | ID=MS.gene44033.t1.exon6;Parent=MS.gene44033.t1 |
| chr1.3 | CDS | 57639930 | 57639981 | 57639930 | ID=cds.MS.gene44033.t1;Parent=MS.gene44033.t1 |
| chr1.3 | exon | 57640138 | 57640217 | 57640138 | ID=MS.gene44033.t1.exon7;Parent=MS.gene44033.t1 |
| chr1.3 | CDS | 57640138 | 57640217 | 57640138 | ID=cds.MS.gene44033.t1;Parent=MS.gene44033.t1 |
| chr1.3 | exon | 57640640 | 57640699 | 57640640 | ID=MS.gene44033.t1.exon8;Parent=MS.gene44033.t1 |
| chr1.3 | CDS | 57640640 | 57640699 | 57640640 | ID=cds.MS.gene44033.t1;Parent=MS.gene44033.t1 |
| chr1.3 | exon | 57640989 | 57641069 | 57640989 | ID=MS.gene44033.t1.exon9;Parent=MS.gene44033.t1 |
| chr1.3 | CDS | 57640989 | 57641069 | 57640989 | ID=cds.MS.gene44033.t1;Parent=MS.gene44033.t1 |
| chr1.3 | exon | 57641226 | 57641315 | 57641226 | ID=MS.gene44033.t1.exon10;Parent=MS.gene44033.t1 |
| chr1.3 | CDS | 57641226 | 57641315 | 57641226 | ID=cds.MS.gene44033.t1;Parent=MS.gene44033.t1 |
| Gene Sequence |
| Protein sequence |
