AlfalfaGEDB | MS.gene44060

M. sativa cultivar XinJiangDaYe / MS.gene44060

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44060.t1	XP_003591052.2	95.5	471	21	0	1	471	1	471	5.00E-264	919.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44060.t1	Q8RXC8	59.7	454	161	3	35	466	3	456	1.4e-153	544.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44060.t1	G7I7G7	95.5	471	21	0	1	471	1	471	3.6e-264	919.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049910	MS.gene44060	0.821784	3.36E-53	-1.69E-46
MS.gene052077	MS.gene44060	0.802592	5.22E-49	-1.69E-46
MS.gene052340	MS.gene44060	0.809183	2.15E-50	-1.69E-46
MS.gene054930	MS.gene44060	0.812755	3.61E-51	-1.69E-46
MS.gene061049	MS.gene44060	0.826618	2.46E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene027797	MS.gene44060	PPI
MS.gene065225	MS.gene44060	PPI
MS.gene069121	MS.gene44060	PPI
MS.gene44060	MS.gene008945	PPI
MS.gene44060	MS.gene068586	PPI
MS.gene44060	MS.gene048378	PPI
MS.gene65918	MS.gene44060	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44060.t1	MTR_1g082310	95.541	471	21	0	1	471	1	471	0.0	936
MS.gene44060.t1	MTR_7g113980	60.177	452	138	7	1	444	1	418	0.0	523
MS.gene44060.t1	MTR_2g020810	52.027	444	188	6	40	468	4	437	4.04e-154	445
MS.gene44060.t1	MTR_1g089570	56.104	385	155	4	74	448	32	412	6.34e-147	426
MS.gene44060.t1	MTR_5g031870	45.147	443	211	9	51	467	14	450	7.47e-126	374
MS.gene44060.t1	MTR_5g031870	44.470	443	209	9	51	467	14	445	4.81e-124	369
MS.gene44060.t1	MTR_8g068390	41.648	437	227	7	54	467	47	478	3.39e-113	342
MS.gene44060.t1	MTR_4g127840	53.214	280	130	1	141	419	54	333	3.85e-110	331
MS.gene44060.t1	MTR_4g128990	45.137	401	183	8	35	419	152	531	3.05e-107	330
MS.gene44060.t1	MTR_4g128990	45.137	401	183	8	35	419	153	532	3.42e-107	330

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44060.t1	AT3G05140	59.013	466	169	4	23	466	39	504	0.0	560
MS.gene44060.t1	AT3G05140	59.912	454	160	4	35	466	3	456	0.0	555
MS.gene44060.t1	AT5G18910	57.252	393	156	5	87	468	116	507	5.90e-158	457
MS.gene44060.t1	AT5G35960	52.261	398	174	7	52	438	30	422	6.40e-135	396
MS.gene44060.t1	AT5G35960	54.178	371	158	6	52	415	30	395	1.43e-132	389
MS.gene44060.t1	AT5G65530	47.015	402	192	7	77	467	63	454	8.17e-124	369
MS.gene44060.t1	AT5G10520	45.750	400	202	5	78	467	71	465	9.62e-120	358
MS.gene44060.t1	AT5G57670	45.910	379	193	5	43	419	166	534	1.61e-108	333
MS.gene44060.t1	AT2G18890	51.228	285	136	2	141	422	56	340	4.21e-106	321
MS.gene44060.t1	AT2G18890	51.246	281	134	2	141	418	56	336	7.09e-105	316

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Find 93 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGATGTTTACTCTTT+TGG	0.257821	1.3:-57983009	MS.gene44060:CDS
AAAAGGTACAAAGTTTCTCT+CGG	0.570792	1.3:-57983599	MS.gene44060:CDS
AAACCAGTTGTTCGAATTCG+AGG	0.478414	1.3:-57985035	MS.gene44060:CDS
AACCAGTTGTTCGAATTCGA+GGG	0.575540	1.3:-57985034	MS.gene44060:CDS
AACTATGACCAAGGACAAAT+GGG	0.466031	1.3:-57980595	MS.gene44060:CDS
AATAATTCATAGAGATATTA+AGG	0.339482	1.3:-57983531	MS.gene44060:CDS
AATTGTTGGTTGCATTTCTT+AGG	0.306857	1.3:+57984827	None:intergenic
ACCATAAACCATGATTTATC+AGG	0.363319	1.3:+57985561	None:intergenic
ACTAGAGAAAATTTAATTCC+GGG	0.364790	1.3:-57984898	MS.gene44060:CDS
AGCACAGATGAAAAGACAGC+TGG	0.559200	1.3:-57983994	MS.gene44060:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTAAGTACACTGAATTAG+GGG	+	chr1.3:57984838-57984857	None:intergenic	30.0%
AACTACATAACAAATTCCAG+GGG	+	chr1.3:57984648-57984667	None:intergenic	30.0%
AAGGTGGAGAAAATTTAACA+CGG	-	chr1.3:57984055-57984074	MS.gene44060:CDS	30.0%
ACAAGCTCAAATAATCCAAA+CGG	+	chr1.3:57981233-57981252	None:intergenic	30.0%
ACCATAAACCATGATTTATC+AGG	+	chr1.3:57980212-57980231	None:intergenic	30.0%
AGAAACGAAACATTCTCATA+AGG	-	chr1.3:57981545-57981564	MS.gene44060:intron	30.0%
ATTTGCATGAGAATTGTCAA+AGG	-	chr1.3:57982214-57982233	MS.gene44060:intron	30.0%
CAAAAGATATTGTTAGCTAC+TGG	+	chr1.3:57982449-57982468	None:intergenic	30.0%
CAATTGAAGGAATAGAAGTT+AGG	+	chr1.3:57980817-57980836	None:intergenic	30.0%
CATAATATGTCCACATTTGA+AGG	-	chr1.3:57982600-57982619	MS.gene44060:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	57980186	57985606	57980186	ID=MS.gene44060
chr1.3	mRNA	57980186	57985606	57980186	ID=MS.gene44060.t1;Parent=MS.gene44060
chr1.3	exon	57985563	57985606	57985563	ID=MS.gene44060.t1.exon1;Parent=MS.gene44060.t1
chr1.3	CDS	57985563	57985606	57985563	ID=cds.MS.gene44060.t1;Parent=MS.gene44060.t1
chr1.3	exon	57985254	57985327	57985254	ID=MS.gene44060.t1.exon2;Parent=MS.gene44060.t1
chr1.3	CDS	57985254	57985327	57985254	ID=cds.MS.gene44060.t1;Parent=MS.gene44060.t1
chr1.3	exon	57984818	57985165	57984818	ID=MS.gene44060.t1.exon3;Parent=MS.gene44060.t1
chr1.3	CDS	57984818	57985165	57984818	ID=cds.MS.gene44060.t1;Parent=MS.gene44060.t1
chr1.3	exon	57983857	57984108	57983857	ID=MS.gene44060.t1.exon4;Parent=MS.gene44060.t1
chr1.3	CDS	57983857	57984108	57983857	ID=cds.MS.gene44060.t1;Parent=MS.gene44060.t1
chr1.3	exon	57983493	57983650	57983493	ID=MS.gene44060.t1.exon5;Parent=MS.gene44060.t1
chr1.3	CDS	57983493	57983650	57983493	ID=cds.MS.gene44060.t1;Parent=MS.gene44060.t1
chr1.3	exon	57983161	57983240	57983161	ID=MS.gene44060.t1.exon6;Parent=MS.gene44060.t1
chr1.3	CDS	57983161	57983240	57983161	ID=cds.MS.gene44060.t1;Parent=MS.gene44060.t1
chr1.3	exon	57982939	57983074	57982939	ID=MS.gene44060.t1.exon7;Parent=MS.gene44060.t1
chr1.3	CDS	57982939	57983074	57982939	ID=cds.MS.gene44060.t1;Parent=MS.gene44060.t1
chr1.3	exon	57980528	57980677	57980528	ID=MS.gene44060.t1.exon8;Parent=MS.gene44060.t1
chr1.3	CDS	57980528	57980677	57980528	ID=cds.MS.gene44060.t1;Parent=MS.gene44060.t1
chr1.3	exon	57980186	57980359	57980186	ID=MS.gene44060.t1.exon9;Parent=MS.gene44060.t1
chr1.3	CDS	57980186	57980359	57980186	ID=cds.MS.gene44060.t1;Parent=MS.gene44060.t1

Gene Sequence

>MS.gene44060

ATGGCAAATGAGGGTGACTATTGCCTGATAAATCATGGTTTATGGTATGCATGCATGTCTATTCCTTCATGTTATTACTATCTATATAATTCCATCCATTATGTTAACGAATGTATAATAATATGTGTTTGTATATGATATTCCCTCATCAAAACAAAAGTATTTATATATGATATGATATGATCATTGTTCTTGAGTTTAATATTTTTGGGCAATTACCAATTTGCTATGTTGTTTTCTATTTACGGTTTCTAATATATTTGATTATGTGAAATGTAGGAAACATAAGAGAAGTTTTGCTAGTAAATCAAAGAAGATAGGATCTCTCTTTGCTTGTTCTGCTTCTGCTCAAGGTTTTTTTTCTCATTGCATATTTTTCAAACGCAATTGAAAAGTTTTTCATTGTGTAATGGTGTTTGTGATTTTCATTTTATGAAATAGACTTAAGAAATATGGACCTTGAGAAAGAGAAAGATGATGAGGCATCTCCAAGAGGAGTCCTAGAAGCTTGTGTTAAAGGCTTTGGTGCTCAACAACTACCTGAGTCTGAAACCAGTTGTTCGAATTCGAGGGCGCGATCCCATTGGGGAAAATTTTTTAAACTGTGGAAGAGAAAATCAGTTAAACGCCTAACTTCTATTCCTTCAATTGGTGTGCCAAAGATACCAAAATGGAAAAGTAGAAGCACTAGAGAAAATTTAATTCCGGGCAATCTATACAATTTTAGATCTTCTTTGGTGACTTTCAGCCTCTCTGACCTAAGAAATGCAACCAACAATTTCAGCCATGGTATGTAATATGATGATGGAAATACTTACTTCAGTCAATTATATCATAGACTAATAATAATACACATTATGAATTATTTCTATACTTGCTTGGATATATGAGATGCCTTGAATTATGTTAACGTGAGCTTACTCGAATTGTATCATAACTCGATATTTTGGAACTCAATATGTTAAGGAGAAACAATGGATCATAATTGTGTTTTATGTACTCATGGTAATTAGAACTGTTCATTGTATCATTGAAAATTAAAGTCCGTTTGGATTATTTGAGCTTGTCTACTAACATAAGCACTTGTGACTTGTGAGACTGTTTGCTTGGAAAATGAAAGCAACTTATGATATGTTCATAAGTTTTTTTTCCAGGTTATTTAAGCTTTCTATGATTGCTTATGAGATCAAGTTATTACTTAGATGAAAATGATTTGACTTTATTTTATCTTTTGTTATAGAGATAACTTATACATAAGCACTTATATGATAAAAAAATTATGCTATAAGTGCTTAATCAAACTATTTAACCAAATAAGACCTTACATCGATTCAAGATGTCTATATCTGTTCTTTTTAAAGAAACGAAACATTCTCATAAGGATTGGTCAGACCACATAAAAATATGTTTTTGTTCTCTTTTGCTTGTAGAAAATTGTTTTGTTACGAATATGATCAATTTGACTTTTTATTGAATTCATTGTTCCTTTAACTTGTAGAAAATTTAATTGGAAGAGGTGGTTTTTCTGAGGTTTACAAGGGTTGTCTGCAAGATGGACAACTAATAGCTGTGAAGAAAATGACTACTGGGAGCACAGATGAAAAGACAGCTGGCTTTCTATCCGAGTTAGGAGTTATTGCTCATGTTGATCATCCTAATACTGCAAAGCTTGTTGGATGTTGTGTAGAGGGAGAAATGCATCTTGTCTTCGAATTGTCTACACTGGGAAGTTTAGGACATGTTCTTCATGGTTTGTAGATACTTTGAACTCTCTCATGATGACAATCGCCTTTAAACTTCTTTTGTTTTTAGATCAAAAGGAATTGAACTCAGTACTCGAGGATTTACAACCCTCACACACATATTGTGCATCAACCACTTGTGTTAGACCCTAACGGTCAGTATACTTTCAACTTTAAATGTACTTATAGCTTATTCCTTCACGATGTATTCCAGGTTCAGATAAAACCAAGTTGGATTGGAGTAAAAGGTACAAAGTTTCTCTCGGAATTGCTGATGGTCTTCTCTATTTGCATGAGAATTGTCAAAGGCGAATAATTCATAGAGATATTAAGGCAGAGAATATTCTACTCACAGAGAATTTTGATCCACAGGTTTTTATTAAACTTGTTCATCAGTTATAATGAGGAAATGATTTATTTGTAGTATTACTTAACACATGAAATGTCTTCTGTTGTTGTGTGTTTTATGTTAAACATTCTCTTCGTCTTTTTAATACATGTTCTTATTGTAAGTAAGACCAGTAGCTAACAATATCTTTTGAGAATCTTCTGTATACAATCTTATTGGTGTATACACAATCTTTCTTCTTTTTTTGGTCCTTTATTAATCAAGAATTTGTACAGATTTGTGATTTTGGGCTTGCAAAGTGGTTACCAGAACAATTGACTCACCATAATATGTCCACATTTGAAGGCACATTTGGGTATGCAACACATGAAATACTAATGACATAGTTTTTTTTTCTTCGATTCTCTTGATTTAATATTCCACAAATGACTTGTTTGACAGATATTTATCTCCTGAATATTGCATGCATGGCATAGTGGATGAGAAAACTGATGTTTACTCTTTTGGTGTTCTACTGTTGGAGATCATAACTGGGCGTAAGGCTTTGGATCATACGCAGACAAGTCTCGTGACATGGGTAAATCATTTTCCTAAATAATGTATATCTTATGATTTAGGCAAAAGACATCATGCAGACTTGTAAGTTGTTTAATTGTATCAAATTAGTCCTCAGTTTTTTCCCCACATAAGTTGCAGTGTACACCATAACTCATTTTCTTTCATTACAAAAACACATGTGTCTGCAGGGGCGGACAGGGACGGATCCAGACTTTAGGTGCATGTGGAGCTAAAATTTCAAATAAATAATACTCCCTCCGTCCCATAATAACTGAACCATTTGCAAAAAAAAAAAAGTCCCAAAATAACTGAGTCATTTCATTTTTCAATACAATATTAATTTCTTTTTTCCCTTTATAACTCTAATTAATACTACTTTCATCATTCTAATTCAATACTCCCTCCGTCCTAAATTATAAGCAAAAAAACTCATTTTTTTGTCCCAAATTATAAGAAAAAAGATCAACTTTTATCATATTTAATTATTATTTTTCAAAACATTATCTTTTCCAAGGAAAAATTAAATGCAAAGTGCATTCAATTTGCTCTCTTTTTCGTTTTCTCTATAATCAACTACCAATGAAAATTGTTTTTACACCTTCCTATAAAACTTATTTCAAAGATAACACAAAAAAAACTATGTTACAAACTACTATGTTTTAGTTTTCTTAATAAGTGTGATTTTTTTGTTGCTTATAATATGGGACCGAGGGAGTATATTCCACTTTACATTTATGATAGTGGAAAATACACCAATACTTAACAAGTGCACTTAAAACTATTTTTCTCTCTCCTTCATTTATACATTTTTCTTAATACATATGAAATGAGCTTTTGGCTCAGTTAATCCGGGACGGATGGAGTAATACAAACTATTTTTTTTAATCCACAAATATTATTACCTTATTGTTTGATACAATACATTACAATGAAAATCATCACCTATCCATTTGTTGAAAATGAGATAAAATGACATCATTGCTAATTGTTAATAGAACATCTCTTAGCCACTGATTACCCATTTTATTACATAGGTTACTCTTCCCAACTTTCATAGCTAAAAAAACACGTTCAACGCTTGCAGTTGCTACCGTGCGTGTGTGCTATATGTGTTTTATCTATTAAAAATAAAAAAAAAATAGGGAAAAGCATGTGGAGCTATAGTCCCATATAGCTCCAACATGCATCCGTCCCTGGGGGCGGAGCCAGAAAAAATAGTTAAGGTGGAGAAAATTTAACACGGTTACATAGTTTTTTTTTTTTTTGTTTTGTTTGAAATAACTAATTTTAGTTAACTTTTTTATTAAATGCATCGACTTTTTTTTTAATAGTCTCTATTTCATTATAAATATTTCATTTGAGTTGTGTACGGTTCTTATAAAAATAACAACTCGTGTTGATTACAATGATAAAATAAGTTACATTTATTATATCACTCTTATTAGTGTAGTTTTTTTAGAGGTTATTACTTATTAGTGGAAGGAGATTGTCTCCTGTGTAGTTGGTATGAGATATAATAAATAATACTATATTAATGAGAAAAATACTTAATGTTTCATTAGTATTTTAAAGTAACAATTAGTTTGAGTCATAGATATATTATTATAAATGAAACGGTTATAATGATGCATTGTTTTTGTTCTTCGAAAAAAAAAGGTAATCAATTTCTCTAAGGTGAATTTTATGGTGTTTTACCAATATTTTCCTCTTAGTCAAAAAAATGAAAGATTTAGATAAACCTGACTTATTGGAAGGAGTGAGTAAAAATGTCTTGGATAGATGACATAGAAGAAGTGTGTAAATGTAATAACCCCTGGAATTTGTTATGTAGTTAAAATTGCTTTATAGTAGTGAAAGTTGCATTGAAATGAGTAGCATGTTATGAAGTTTTAACATCGTAAATTTGTATAACTAACAGAAGTGCCTAGCTCTGTAGGGAGGCGTATATATAAGTTCCAATATCATATACTCAGAATTTTTTGCCTTTGGGGTGGCTAGTGCCCCTAATTCAGTGTACTTAGTTCCGTCCCTGGTATCTGTTATGCTACTTATGTGGCAAGAACAAAGTTTCTCATTTATCATACAATGATTTGTCAAGTCAATAAGGATAATAATGTACCCATATTAGGACTTAAAAGATCTGCATGAAACAAAACAATAAAACTAAAGGACTAATTTCGTATAATTAAACAACTTCAATGACTAGAAAATATATTTTGTCTATTTTCTAATGTGTTACTTGATAGACCTCAAAAGGGTGTTATTTATAATTTATGGTAGGCAAAACCTTTGCTTGATGCTAATAATATCAAGGATGTTGTTGATCCTTCTCTTGGAGGTAACTATGACCAAGGACAAATGGGATGTCTTAGTTTGACTGCATCAATGTGTGTTGAGCAGTCTCCTATTTTACGCCCTCGCATGAGTCAGGTAAATACACAATGAGCTATATAGTTTGCACACTTGTTCATTTAATTGAAATTTCGCTTAGCATTATATACCATCATTACAATGCAAAAACCATGATCCAAAGTGAAAGGTTAAGAGAACCATATATAATAAAATTGAGATTGATTATATCTTCTTCGATGGATGCAGGTAGTAACACTGCTAAGAGGGGAAAAATCTGTCATGAATGCAAGAGCATGCAGCAAAAGGAGGAATCTCCAAAGAACATATTCAGAAGAGCTACTTGATGCACAAGAATACAACTCAACAAAATATCTAAGAGATCTCAATCGACATAAAAAGATTTTGGGTCTTGAGGTTTAA

Protein sequence

>MS.gene44060.t1

MANEGDYCLINHGLWKHKRSFASKSKKIGSLFACSASAQDLRNMDLEKEKDDEASPRGVLEACVKGFGAQQLPESETSCSNSRARSHWGKFFKLWKRKSVKRLTSIPSIGVPKIPKWKSRSTRENLIPGNLYNFRSSLVTFSLSDLRNATNNFSHENLIGRGGFSEVYKGCLQDGQLIAVKKMTTGSTDEKTAGFLSELGVIAHVDHPNTAKLVGCCVEGEMHLVFELSTLGSLGHVLHGSDKTKLDWSKRYKVSLGIADGLLYLHENCQRRIIHRDIKAENILLTENFDPQICDFGLAKWLPEQLTHHNMSTFEGTFGYLSPEYCMHGIVDEKTDVYSFGVLLLEIITGRKALDHTQTSLVTWAKPLLDANNIKDVVDPSLGGNYDQGQMGCLSLTASMCVEQSPILRPRMSQVVTLLRGEKSVMNARACSKRRNLQRTYSEELLDAQEYNSTKYLRDLNRHKKILGLEV