AlfalfaGEDB | MS.gene065225

M. sativa cultivar XinJiangDaYe / MS.gene065225

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065225.t1	XP_013446080.1	98.3	463	7	1	1	462	19	481	9.20E-263	915.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065225.t1	Q8H1D6	62.5	400	137	5	65	461	78	467	3.9e-145	516.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065225.t1	A0A072TRR5	98.3	463	7	1	1	462	19	481	6.6e-263	915.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene021114	MS.gene065225	PPI
MS.gene065225	MS.gene008217	PPI
MS.gene065225	MS.gene54027	PPI
MS.gene065225	MS.gene90911	PPI
MS.gene065225	MS.gene41176	PPI
MS.gene065225	MS.gene046182	PPI
MS.gene065225	MS.gene62251	PPI
MS.gene065225	MS.gene31247	PPI
MS.gene065225	MS.gene052122	PPI
MS.gene065225	MS.gene91544	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065225.t1	MTR_8g068390	98.272	463	7	1	1	462	19	481	0.0	939
MS.gene065225.t1	MTR_5g031870	65.665	466	131	7	7	461	5	452	0.0	600
MS.gene065225.t1	MTR_5g031870	64.592	466	131	8	7	461	5	447	0.0	582
MS.gene065225.t1	MTR_2g020810	45.598	443	218	8	23	460	12	436	1.43e-130	385
MS.gene065225.t1	MTR_1g089570	52.280	329	149	4	107	430	74	399	2.41e-116	347
MS.gene065225.t1	MTR_1g082310	41.913	439	222	8	29	459	54	467	5.34e-110	333
MS.gene065225.t1	MTR_4g127840	53.135	303	136	4	122	422	41	339	5.07e-109	328
MS.gene065225.t1	MTR_7g113980	53.628	317	139	5	129	443	109	419	4.56e-108	327
MS.gene065225.t1	MTR_4g128990	52.000	300	136	4	121	414	235	532	5.65e-107	329
MS.gene065225.t1	MTR_4g128990	52.000	300	136	4	121	414	234	531	7.83e-107	328

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065225.t1	AT5G65530	61.765	442	145	8	30	461	29	456	0.0	535
MS.gene065225.t1	AT5G10520	62.500	400	137	5	65	461	78	467	0.0	525
MS.gene065225.t1	AT5G10520	66.890	299	87	4	65	360	78	367	9.01e-144	416
MS.gene065225.t1	AT5G18910	46.715	411	199	7	58	460	108	506	2.12e-126	377
MS.gene065225.t1	AT5G35960	46.287	404	197	6	28	430	31	415	4.42e-119	355
MS.gene065225.t1	AT5G35960	47.135	384	183	6	28	410	31	395	5.38e-117	348
MS.gene065225.t1	AT3G05140	46.867	399	192	8	68	460	74	458	8.90e-112	337
MS.gene065225.t1	AT3G05140	46.867	399	192	8	68	460	122	506	1.56e-111	338
MS.gene065225.t1	AT2G18890	50.329	304	147	3	119	419	40	342	1.72e-105	319
MS.gene065225.t1	AT2G18890	50.847	295	141	3	119	410	40	333	1.43e-103	312

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Find 110 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCATCATCACCAGGAGG+AGG	0.609049	8.1:-36573043	MS.gene065225:CDS
AAAGGGAGAAGAGGTAGCAA+TGG	0.606974	8.1:-36570557	MS.gene065225:CDS
AAAGTGGCTTCCAGATAAAT+GGG	0.487471	8.1:-36571465	MS.gene065225:CDS
AAATTTCTAGGAAGAATTTG+CGG	0.551450	8.1:-36572925	MS.gene065225:CDS
AACAATCCAAAGAAAGAGTT+TGG	0.297259	8.1:-36573178	MS.gene065225:CDS
AACCCGAATGTGCCTTCTAT+TGG	0.292060	8.1:+36571425	None:intergenic
AAGGAAGCTGGAGACAGAGC+TGG	0.530068	8.1:-36572030	MS.gene065225:CDS
AAGGTTCAAGGTAGCAGTTG+GGG	0.617280	8.1:-36571704	MS.gene065225:CDS
AATGTTTGGCGTGGAATATA+AGG	0.385110	8.1:-36571723	MS.gene065225:CDS
AATTGAAATGAAGCTAGTCA+TGG	0.604111	8.1:-36570940	MS.gene065225:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAATCCAAAGAAAGAGTT+TGG	-	chr8.1:36570459-36570478	MS.gene065225:CDS	30.0%
AATCCGATTCAAAAGGATAA+TGG	+	chr8.1:36573004-36573023	None:intergenic	30.0%
AATTGAAATGAAGCTAGTCA+TGG	-	chr8.1:36572697-36572716	MS.gene065225:intron	30.0%
GAACAAAAATCCGATTCAAA+AGG	+	chr8.1:36573011-36573030	None:intergenic	30.0%
GCCTTAAACAAAAACATTAC+CGG	+	chr8.1:36571086-36571105	None:intergenic	30.0%
GCTTTCGACAAATTATTAGT+AGG	+	chr8.1:36572576-36572595	None:intergenic	30.0%
GTGACATTACATAACATTTC+AGG	-	chr8.1:36571886-36571905	MS.gene065225:intron	30.0%
TAACTAAAGTTTCTCCAAGA+AGG	+	chr8.1:36570822-36570841	None:intergenic	30.0%
TATAGATACATGTAGATGGA+CGG	-	chr8.1:36571284-36571303	MS.gene065225:CDS	30.0%
TCTTTACAATCACATGTGTT+AGG	-	chr8.1:36572813-36572832	MS.gene065225:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	36570432	36573227	36570432	ID=MS.gene065225
chr8.1	mRNA	36570432	36573227	36570432	ID=MS.gene065225.t1;Parent=MS.gene065225
chr8.1	exon	36572780	36573227	36572780	ID=MS.gene065225.t1.exon1;Parent=MS.gene065225.t1
chr8.1	CDS	36572780	36573227	36572780	ID=cds.MS.gene065225.t1;Parent=MS.gene065225.t1
chr8.1	exon	36571890	36572147	36571890	ID=MS.gene065225.t1.exon2;Parent=MS.gene065225.t1
chr8.1	CDS	36571890	36572147	36571890	ID=cds.MS.gene065225.t1;Parent=MS.gene065225.t1
chr8.1	exon	36571600	36571751	36571600	ID=MS.gene065225.t1.exon3;Parent=MS.gene065225.t1
chr8.1	CDS	36571600	36571751	36571600	ID=cds.MS.gene065225.t1;Parent=MS.gene065225.t1
chr8.1	exon	36571428	36571507	36571428	ID=MS.gene065225.t1.exon4;Parent=MS.gene065225.t1
chr8.1	CDS	36571428	36571507	36571428	ID=cds.MS.gene065225.t1;Parent=MS.gene065225.t1
chr8.1	exon	36571196	36571334	36571196	ID=MS.gene065225.t1.exon5;Parent=MS.gene065225.t1
chr8.1	CDS	36571196	36571334	36571196	ID=cds.MS.gene065225.t1;Parent=MS.gene065225.t1
chr8.1	exon	36570884	36571033	36570884	ID=MS.gene065225.t1.exon6;Parent=MS.gene065225.t1
chr8.1	CDS	36570884	36571033	36570884	ID=cds.MS.gene065225.t1;Parent=MS.gene065225.t1
chr8.1	exon	36570432	36570593	36570432	ID=MS.gene065225.t1.exon7;Parent=MS.gene065225.t1
chr8.1	CDS	36570432	36570593	36570432	ID=cds.MS.gene065225.t1;Parent=MS.gene065225.t1

Gene Sequence

>MS.gene065225

ATGGTCGATATGATAACGGGTAATAACAACAATCCAAAGAAAGAGTTTGGTTTTGCAAATGAAAACAACAATGATTCACCAACAGCATCACCAAGAGGTGTATTTGAGGTACCAATTTCGGATTCCGACAGCACGGGGAGCAGCAACTACAGCAATGGAGGGAAACCATCATCACCAGGAGGAGGAGATGGAGGGCACCAATGGAAGGCTATGATTGATGCATTGAGGTTTAAGTCTGTGAGGAGATTTTCTACCATTCCTTTGCTTGCTGCTAGCTATGAAATTTCTAGGAAGAATTTGCGGAACAAGTTGGCTCGTAAAAGAACAGCTAATGATGAAGATGAGAATTTTTTTGATGGTGCTTTTGATCTTGATGGTATTACAAAGCCTTCTTGGAGAAACTTTAGTTATGAAGATCTTGTTGCTGCAACTGACAATTTCAATCCTGGTAAGGAATTAGCATTTACAAATGAAGAATAGAATTAATCAAATACTACGTTTCTTAATTCACATAATTACTACTCTGGTCTCAAATATAAGCAAAGAAAAGTCAAACAAAATTAATGTATGGTTAAAAATTTGAATCAGATACATCTACTTTGTTTGTCTTTTTGCTTATAGTCGACATCATAGGGAGTATCATATAAGAAACCGGTAATGTTTTTGTTTAAGGCTTATATATGTATATGAAGCATTGAAGTTGCATACATGGATAATTTATTCGTCAAATTTGTGAAATAGCAATTCAGTTCATTTAGTCATTCTTCAAATTACGCACAATTTTGAAGTTTCTATGCCTATTTTGATGCAGCAAGTCAATATACTGGTTTTTCATTGGTTTTGATATATGTTTATAGATACATGTAGATGGACGGACTGAATTGATTGACGACGTCCTTTAATTTACATGACAAATTTGCTATTGATGGACTAAATTATTCGTCGCTTACAATTTCAAGGACCAAAATGCTGATTTATCCGATAGTTTCACAAAACATAAATATATTGAAGGAAATGTCGTTGTTTTTACTACCTATTTGGATAAATTGTATTATAATCTTTTGATTTCTGATCTTGTAGAGAACATGATTGGAAAAGGTGGTCATGCAGAAGTGTACAAAGGACGCTTACCTGATGGAATGGTTGTAGCAGTAAAGAGGCTAATGAACAATGAGAAGGAAGCTGGAGACAGAGCTGGTGATTTCTTGTCAGAGCTTGGGATTATTGCTCACATTAACCACCAAAATGCAACACGCCTCATCGGTTTTGGAATTGATCGTGGCCTCTACTTTGTTCTTCAATTCGCCTCACATGGAAGCCTTTCCTCTTTGCTCTTTGGTGCATTGCTTCATCTTTCTCTTACTTCTAAATTCAACTCTTCCTTCTATTTTGTTTGATTCACTGCAAGCCCTACTTAAAATTTATTCTTTATTGCTATCGAAAAGTTAAAGAAAGTGACATTACATAACATTTCAGGCTCTGAATGTTTGGCGTGGAATATAAGGTTCAAGGTAGCAGTTGGGGTTGCCAAAGGTTTGCAATATCTCCATCAAGATTGTCCAAGAAGAATCATTCACAGAGACATCAAAGCCTCAAACATATTACTCAACTATGATGATGAAGCCGAGGTACACAATATGTTAATATTGTGAACTTCAACTTATAAATGAAATTATTTTTTTCGTACTTAGTAAACAATTTCATTCGAAATGAACTGCAGATTTCAGATTTTGGATTGGCAAAGTGGCTTCCAGATAAATGGGCACACCATGTTGTATTCCCAATAGAAGGCACATTCGGGTTGGCATTAGCATAAAATCAAATGATTTTTTATGCATTTTCTTTCAAGTGTAACTTCTATTTAAGAAACTATGGTTGGTAATTTTGATGCAGGTATTTGGCTCCAGAGTATTTCATGCATGGACTTGTGGATGAGAAGACTGATGTTTTTGCATTTGGGGTATTGTTACTTGAACTCTTGACAGGTCGTCGTGCGGTTGATTCAAATAGCAAGCAAAGTCTTGTGATTTGGGTAAGTTTTCATAACCCTTTTACAATCCATACTCAAATCCTCTATGTACACTCACATACATTGACTTTTCAACTACCACTTTTGCTTATATTTCATTCCGGATGGAGTACCTACTAATAATTTGTCGAAAGCATATGATTGACCATCTTTTGTTGTGGACAGGCTAAACCACTATTGGACGCAAAGCAAGTGAAAGAAATAGCAGACCCAAGATTAGGAGAGCAATATGATCCAATTGAAATGAAGCTAGTCATGGCAACAGCTTCCAGATGTATCCACCACATGTCCTCTAAAAGGCCATTCATGGATCAGGTAACAAAATAAGCATATTTTTTCTTTTTCACTTTGGTCTTTACAATCACATGTGTTAGGTATGACTCATAGTTACCGATAAGTGGATACAGTTCAGGGATAATATTGTAAATACAATCTGTACATTGTAAATTCCTAAATTCGATTAAAAGTTTGAGAGGTAGACACAATCGGCTAAACTATGTGATCAACCATCATCTGTATTTTGTCTGCATTTTTTTCGCACCATTATCCTTTTGAATCGGATTTTTGTTCTAACTACGTCGTCATTTTACTTTGGCAATAAATAGGTTGTGCTACTACTAAAGGGAGAAGAGGTAGCAATGGACCTCACTCAAAAAACAATAGCTCCAAGGTCACTCTTGTTAGATGCTTGTGATTTAGAAGACTATACTTGTTCTAATTATTTGAATGATCTCAATCGCCACAAGCAATTAATCATGGAGATATGA

Protein sequence

>MS.gene065225.t1

MVDMITGNNNNPKKEFGFANENNNDSPTASPRGVFEVPISDSDSTGSSNYSNGGKPSSPGGGDGGHQWKAMIDALRFKSVRRFSTIPLLAASYEISRKNLRNKLARKRTANDEDENFFDGAFDLDGITKPSWRNFSYEDLVAATDNFNPENMIGKGGHAEVYKGRLPDGMVVAVKRLMNNEKEAGDRAGDFLSELGIIAHINHQNATRLIGFGIDRGLYFVLQFASHGSLSSLLFGSECLAWNIRFKVAVGVAKGLQYLHQDCPRRIIHRDIKASNILLNYDDEAEISDFGLAKWLPDKWAHHVVFPIEGTFGYLAPEYFMHGLVDEKTDVFAFGVLLLELLTGRRAVDSNSKQSLVIWAKPLLDAKQVKEIADPRLGEQYDPIEMKLVMATASRCIHHMSSKRPFMDQVVLLLKGEEVAMDLTQKTIAPRSLLLDACDLEDYTCSNYLNDLNRHKQLIMEI