Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44571.t1 | XP_013466817.1 | 95.3 | 319 | 15 | 0 | 1 | 319 | 52 | 370 | 5.90E-176 | 626.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44571.t1 | P93324 | 53.1 | 311 | 141 | 4 | 12 | 319 | 64 | 372 | 9.1e-93 | 341.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44571.t1 | A0A072VHJ4 | 95.3 | 319 | 15 | 0 | 1 | 319 | 52 | 370 | 4.2e-176 | 626.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050559 | MS.gene44571 | 0.821054 | 4.95E-53 | -1.69E-46 |
| MS.gene050561 | MS.gene44571 | 0.816367 | 5.74E-52 | -1.69E-46 |
| MS.gene050562 | MS.gene44571 | 0.815848 | 7.49E-52 | -1.69E-46 |
| MS.gene052500 | MS.gene44571 | 0.852819 | 3.59E-61 | -1.69E-46 |
| MS.gene052502 | MS.gene44571 | 0.844694 | 6.45E-59 | -1.69E-46 |
| MS.gene052826 | MS.gene44571 | 0.850419 | 1.72E-60 | -1.69E-46 |
| MS.gene057472 | MS.gene44571 | 0.815713 | 8.03E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 58 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCAATATCCTTCAATTA+AGG | 0.171873 | 1.3:-20590704 | MS.gene44571:CDS |
| ACTGCAAGCCATATGAAATT+TGG | 0.231520 | 1.3:+20590111 | None:intergenic |
| ACAATCACTTTCCCATGTTT+TGG | 0.276979 | 1.3:+20590280 | None:intergenic |
| CTGGACCATTAGAAATTAAA+AGG | 0.282224 | 1.3:-20590813 | MS.gene44571:CDS |
| GGATAAAGATGGAGGCTCTT+TGG | 0.282636 | 1.3:-20592261 | MS.gene44571:CDS |
| TGGACCAACCTTTAGTAAAA+TGG | 0.289172 | 1.3:+20590462 | None:intergenic |
| TCAAGCCTCTCAGCCAATTC+AGG | 0.291900 | 1.3:+20592401 | None:intergenic |
| GCCAATTCAGGGTGTTGATT+TGG | 0.300679 | 1.3:+20592413 | None:intergenic |
| ACATGGGAAAGTGATTGTTT+TGG | 0.324846 | 1.3:-20590275 | MS.gene44571:CDS |
| TTCTTTCTTACCATCTTCAT+TGG | 0.332460 | 1.3:+20592325 | None:intergenic |
| AGGATCCTCAAGTTATATAA+AGG | 0.334038 | 1.3:-20590793 | MS.gene44571:CDS |
| GATAAAGATGGAGGCTCTTT+GGG | 0.338071 | 1.3:-20592260 | MS.gene44571:CDS |
| AACCAAGCAATGGGCCAATC+TGG | 0.360100 | 1.3:-20590832 | MS.gene44571:CDS |
| ATTCAATTCTTTATTTGTCT+TGG | 0.365557 | 1.3:+20590864 | None:intergenic |
| TTGCTAGGGTTTGGCACCTC+TGG | 0.367599 | 1.3:+20590241 | None:intergenic |
| TGATGCAAAGGATGCAATAT+TGG | 0.368078 | 1.3:-20590944 | MS.gene44571:CDS |
| TCCAAATCAACACCCTGAAT+TGG | 0.385842 | 1.3:-20592414 | MS.gene44571:CDS |
| TGCAGCTTGTATGTCATAAC+TGG | 0.386144 | 1.3:-20590351 | MS.gene44571:intron |
| AAACACTGTTACATCCTCTA+TGG | 0.386200 | 1.3:+20592219 | None:intergenic |
| TCTCAATATCCTTCAATTAA+GGG | 0.412926 | 1.3:-20590703 | MS.gene44571:CDS |
| AAATTAACTCCCTTAATTGA+AGG | 0.418849 | 1.3:+20590694 | None:intergenic |
| TTAGACATATTGCTAGGGTT+TGG | 0.425493 | 1.3:+20590232 | None:intergenic |
| ATAGAGGATGTAACAGTGTT+TGG | 0.430033 | 1.3:-20592217 | MS.gene44571:intron |
| AACTTCACACATTCTTCATC+TGG | 0.433585 | 1.3:+20590328 | None:intergenic |
| GTTTATGCTCTCTCATCAAT+TGG | 0.442550 | 1.3:-20592299 | MS.gene44571:CDS |
| TAATTTCTAATGGTCCAGAT+TGG | 0.453045 | 1.3:+20590818 | None:intergenic |
| TACTTTGCATTGGATAAAGA+TGG | 0.457504 | 1.3:-20592272 | MS.gene44571:CDS |
| ATCTCAACATTGGTTGATGT+TGG | 0.463245 | 1.3:-20590760 | MS.gene44571:CDS |
| CTTGTAGGGCTTGAGCATGT+TGG | 0.467262 | 1.3:-20590520 | MS.gene44571:intron |
| GTCCAGATTGGCCCATTGCT+TGG | 0.468407 | 1.3:+20590830 | None:intergenic |
| AATTGGTCAATACTTTGCAT+TGG | 0.471367 | 1.3:-20592282 | MS.gene44571:CDS |
| AGTGATGTCTCAGCCATGTC+TGG | 0.482323 | 1.3:-20590091 | MS.gene44571:CDS |
| GCATGCTTAGACATATTGCT+AGG | 0.482902 | 1.3:+20590226 | None:intergenic |
| CTATGGATTAATGTTGAAAG+TGG | 0.496391 | 1.3:+20592236 | None:intergenic |
| CACAAAGCTTTACCAAAACA+TGG | 0.501741 | 1.3:-20590292 | MS.gene44571:CDS |
| ACCATCTTCATTGGTACGAA+TGG | 0.502294 | 1.3:+20592334 | None:intergenic |
| CAAAACCTTTATATAACTTG+AGG | 0.507417 | 1.3:+20590788 | None:intergenic |
| GTAGGGCTTGAGCATGTTGG+AGG | 0.508594 | 1.3:-20590517 | MS.gene44571:intron |
| GAGAGCTTATGTAAGAGAGC+TGG | 0.513125 | 1.3:-20590139 | MS.gene44571:CDS |
| CAAGATGCACCTACTCATCC+AGG | 0.521406 | 1.3:-20590652 | MS.gene44571:intron |
| AGTAAAATGGCATCACCACT+TGG | 0.524337 | 1.3:+20590475 | None:intergenic |
| GTTGATGTTGGAGGTGGAGT+AGG | 0.524896 | 1.3:-20590748 | MS.gene44571:CDS |
| CTCAGCCATGTCTGGAGTGA+TGG | 0.528544 | 1.3:-20590083 | MS.gene44571:CDS |
| CAAGCCTCTCAGCCAATTCA+GGG | 0.537180 | 1.3:+20592402 | None:intergenic |
| TCCATTCGTACCAATGAAGA+TGG | 0.540221 | 1.3:-20592335 | MS.gene44571:CDS |
| CTTTCAACATTAATCCATAG+AGG | 0.541916 | 1.3:-20592233 | MS.gene44571:CDS |
| CATGCTTAGACATATTGCTA+GGG | 0.550831 | 1.3:+20590227 | None:intergenic |
| TGAACGCATGTTGACTGTGT+TGG | 0.560083 | 1.3:-20592381 | MS.gene44571:CDS |
| ACATTGGTTGATGTTGGAGG+TGG | 0.572639 | 1.3:-20590754 | MS.gene44571:CDS |
| TCAACATTGGTTGATGTTGG+AGG | 0.582503 | 1.3:-20590757 | MS.gene44571:CDS |
| CACTTGCAGGGGTGATGCAA+AGG | 0.585977 | 1.3:-20590956 | MS.gene44571:intron |
| AAACTCCATCACTCCAGACA+TGG | 0.612342 | 1.3:+20590078 | None:intergenic |
| GGTGCATCTTGAACAGCTTG+TGG | 0.613069 | 1.3:+20590664 | None:intergenic |
| AACACCCTGAATTGGCTGAG+AGG | 0.629156 | 1.3:-20592406 | MS.gene44571:CDS |
| TTTGGATTATATAATTCCAG+AGG | 0.632094 | 1.3:-20590257 | MS.gene44571:CDS |
| TTTGCATTGGATAAAGATGG+AGG | 0.638338 | 1.3:-20592269 | MS.gene44571:CDS |
| ACAAAGCTTTACCAAAACAT+GGG | 0.663342 | 1.3:-20590291 | MS.gene44571:CDS |
| ATGTTTGAAAGTGTTCCAAG+TGG | 0.739305 | 1.3:-20590490 | MS.gene44571:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAGTTAATTTATAGATTT+AGG | - | chr1.3:20591406-20591425 | MS.gene44571:intron | 10.0% |
| !!! | AATGTCTAATTTTTTTTTTA+GGG | + | chr1.3:20590425-20590444 | None:intergenic | 10.0% |
| !!! | TAATGTCTAATTTTTTTTTT+AGG | + | chr1.3:20590426-20590445 | None:intergenic | 10.0% |
| !! | AAAAATATTAGCATAATTCA+AGG | + | chr1.3:20591226-20591245 | None:intergenic | 15.0% |
| !! | ATAATCTAGTAGATAAAATT+AGG | - | chr1.3:20590950-20590969 | MS.gene44571:CDS | 15.0% |
| !! | GTATATAATTTATATGAACA+CGG | - | chr1.3:20591273-20591292 | MS.gene44571:intron | 15.0% |
| !! | TAAACAAAATTTAAACAGTT+TGG | - | chr1.3:20592110-20592129 | MS.gene44571:intron | 15.0% |
| !! | TAAATATAGACATATTTGTA+TGG | - | chr1.3:20591549-20591568 | MS.gene44571:intron | 15.0% |
| !! | TACAAGCAAAATAAAATTTA+TGG | + | chr1.3:20592010-20592029 | None:intergenic | 15.0% |
| !! | TGATTTAATGATAAAAAGAT+AGG | + | chr1.3:20590710-20590729 | None:intergenic | 15.0% |
| !!! | ATAAATTTTATTTTGCTTGT+AGG | - | chr1.3:20592009-20592028 | MS.gene44571:intron | 15.0% |
| !!! | TAAATTTTATTTTGCTTGTA+GGG | - | chr1.3:20592010-20592029 | MS.gene44571:intron | 15.0% |
| !!! | TTAAGTTTAAAATTATGCAT+TGG | + | chr1.3:20590806-20590825 | None:intergenic | 15.0% |
| !!! | TTTAAATTTTGTTTATCATG+TGG | + | chr1.3:20592105-20592124 | None:intergenic | 15.0% |
| !!! | TTTATGGTACTTATTATTTT+TGG | + | chr1.3:20591994-20592013 | None:intergenic | 15.0% |
| !! | AAATCAACACATAATAAAAG+TGG | - | chr1.3:20590724-20590743 | MS.gene44571:CDS | 20.0% |
| !! | AATGGGAATATAAAAATGAT+TGG | - | chr1.3:20591338-20591357 | MS.gene44571:intron | 20.0% |
| !! | ATGGGAATATAAAAATGATT+GGG | - | chr1.3:20591339-20591358 | MS.gene44571:intron | 20.0% |
| !! | CAAATATGTCTATATTTACT+AGG | + | chr1.3:20591547-20591566 | None:intergenic | 20.0% |
| !! | TAAAAAAAAGAGAAAGTCTT+AGG | + | chr1.3:20590552-20590571 | None:intergenic | 20.0% |
| !! | TCTAGTAGATAAAATAAAAG+TGG | - | chr1.3:20590839-20590858 | MS.gene44571:CDS | 20.0% |
| !!! | AAGTTATATAAAGGTTTTGA+AGG | - | chr1.3:20591760-20591779 | MS.gene44571:intron | 20.0% |
| !!! | AATCTTTTTCAAAGTATCAA+TGG | - | chr1.3:20591637-20591656 | MS.gene44571:intron | 20.0% |
| !!! | ACAAGTGTTTTTAAGATTTT+AGG | + | chr1.3:20590621-20590640 | None:intergenic | 20.0% |
| !!! | ATCTTTTTCAAAGTATCAAT+GGG | - | chr1.3:20591638-20591657 | MS.gene44571:intron | 20.0% |
| !!! | ATGCTAATATTTTTGAAGAT+AGG | - | chr1.3:20591232-20591251 | MS.gene44571:intron | 20.0% |
| !!! | ATTCAATTCTTTATTTGTCT+TGG | + | chr1.3:20591683-20591702 | None:intergenic | 20.0% |
| !!! | ATTGATTGATATATTTTACC+TGG | + | chr1.3:20591913-20591932 | None:intergenic | 20.0% |
| !!! | GATTTTAGGTTTTCTTTTTT+TGG | + | chr1.3:20590607-20590626 | None:intergenic | 20.0% |
| !!! | TATATCTACGTTATTTCTTT+AGG | - | chr1.3:20590652-20590671 | MS.gene44571:intron | 20.0% |
| !!! | TATTTTTGGCTTAAAGTAAA+GGG | + | chr1.3:20591980-20591999 | None:intergenic | 20.0% |
| !!! | TTATTTTTGGCTTAAAGTAA+AGG | + | chr1.3:20591981-20592000 | None:intergenic | 20.0% |
| ! | AAATTAACTCCCTTAATTGA+AGG | + | chr1.3:20591853-20591872 | None:intergenic | 25.0% |
| ! | AGCATTATAAGAAACTTCTA+CGG | + | chr1.3:20591468-20591487 | None:intergenic | 25.0% |
| ! | ATGATAAAAAGATAGGACTT+AGG | + | chr1.3:20590703-20590722 | None:intergenic | 25.0% |
| ! | CAAAACCTTTATATAACTTG+AGG | + | chr1.3:20591759-20591778 | None:intergenic | 25.0% |
| ! | TAAACTAGGTCAAGTAATAT+GGG | - | chr1.3:20591097-20591116 | MS.gene44571:intron | 25.0% |
| ! | TCTCAATATCCTTCAATTAA+GGG | - | chr1.3:20591841-20591860 | MS.gene44571:intron | 25.0% |
| ! | TGGGAATATAAAAATGATTG+GGG | - | chr1.3:20591340-20591359 | MS.gene44571:intron | 25.0% |
| ! | TTAAACTAGGTCAAGTAATA+TGG | - | chr1.3:20591096-20591115 | MS.gene44571:intron | 25.0% |
| ! | TTTGGATTATATAATTCCAG+AGG | - | chr1.3:20592287-20592306 | MS.gene44571:CDS | 25.0% |
| !! | ATAGTGCACATTTTTAAACT+AGG | - | chr1.3:20591083-20591102 | MS.gene44571:intron | 25.0% |
| !! | TGAAAAAGATTTTTGACATC+AGG | + | chr1.3:20591628-20591647 | None:intergenic | 25.0% |
| !! | TGGATTTTCCAAATTTCATA+TGG | - | chr1.3:20592425-20592444 | MS.gene44571:CDS | 25.0% |
| !!! | AGGATCCTTTTAATTTCTAA+TGG | + | chr1.3:20591739-20591758 | None:intergenic | 25.0% |
| AAAAGATTATATGCACTTGC+AGG | - | chr1.3:20591575-20591594 | MS.gene44571:intron | 30.0% | |
| AAAGATTATATGCACTTGCA+GGG | - | chr1.3:20591576-20591595 | MS.gene44571:intron | 30.0% | |
| AATTGGTCAATACTTTGCAT+TGG | - | chr1.3:20590262-20590281 | MS.gene44571:CDS | 30.0% | |
| ACAAAGCTTTACCAAAACAT+GGG | - | chr1.3:20592253-20592272 | MS.gene44571:CDS | 30.0% | |
| AGGATCCTCAAGTTATATAA+AGG | - | chr1.3:20591751-20591770 | MS.gene44571:intron | 30.0% | |
| ATCTTAAACTGACCATTCAT+GGG | - | chr1.3:20591312-20591331 | MS.gene44571:intron | 30.0% | |
| CTCTCAATATCCTTCAATTA+AGG | - | chr1.3:20591840-20591859 | MS.gene44571:intron | 30.0% | |
| CTGGACCATTAGAAATTAAA+AGG | - | chr1.3:20591731-20591750 | MS.gene44571:intron | 30.0% | |
| CTTTCAACATTAATCCATAG+AGG | - | chr1.3:20590311-20590330 | MS.gene44571:CDS | 30.0% | |
| GGGAATATAAAAATGATTGG+GGG | - | chr1.3:20591341-20591360 | MS.gene44571:intron | 30.0% | |
| TAATTTCTAATGGTCCAGAT+TGG | + | chr1.3:20591729-20591748 | None:intergenic | 30.0% | |
| TACTTTGCATTGGATAAAGA+TGG | - | chr1.3:20590272-20590291 | MS.gene44571:CDS | 30.0% | |
| TATCTTAAACTGACCATTCA+TGG | - | chr1.3:20591311-20591330 | MS.gene44571:intron | 30.0% | |
| TTAGGTGATCACAATCATTT+AGG | + | chr1.3:20590534-20590553 | None:intergenic | 30.0% | |
| TTCTTTCTTACCATCTTCAT+TGG | + | chr1.3:20590222-20590241 | None:intergenic | 30.0% | |
| ! | ATTGAGAGAGAATGAGTTTT+AGG | + | chr1.3:20591828-20591847 | None:intergenic | 30.0% |
| ! | CTATGGATTAATGTTGAAAG+TGG | + | chr1.3:20590311-20590330 | None:intergenic | 30.0% |
| ! | GATATTTTCAACCAAGCAAT+GGG | - | chr1.3:20591703-20591722 | MS.gene44571:intron | 30.0% |
| ! | TATATTTTACCTGGATGAGT+AGG | + | chr1.3:20591904-20591923 | None:intergenic | 30.0% |
| ! | TGATATTTTCAACCAAGCAA+TGG | - | chr1.3:20591702-20591721 | MS.gene44571:intron | 30.0% |
| ! | TTGAGAGAGAATGAGTTTTA+GGG | + | chr1.3:20591827-20591846 | None:intergenic | 30.0% |
| !! | ACGTTATTTCTTTAGGAGTT+AGG | - | chr1.3:20590659-20590678 | MS.gene44571:CDS | 30.0% |
| !! | CGTTATTTCTTTAGGAGTTA+GGG | - | chr1.3:20590660-20590679 | MS.gene44571:CDS | 30.0% |
| !! | GGTACCTCTAAAATTATAGA+GGG | + | chr1.3:20591183-20591202 | None:intergenic | 30.0% |
| !! | TGGTACCTCTAAAATTATAG+AGG | + | chr1.3:20591184-20591203 | None:intergenic | 30.0% |
| !! | TTTTGAAGGAATCTCAACAT+TGG | - | chr1.3:20591774-20591793 | MS.gene44571:intron | 30.0% |
| !!! | CTCATGTTTTTAGTAACAAC+TGG | - | chr1.3:20592357-20592376 | MS.gene44571:CDS | 30.0% |
| !!! | GTTTTTAGTAACAACTGGAA+AGG | - | chr1.3:20592362-20592381 | MS.gene44571:CDS | 30.0% |
| AAACACTGTTACATCCTCTA+TGG | + | chr1.3:20590328-20590347 | None:intergenic | 35.0% | |
| AACTTCACACATTCTTCATC+TGG | + | chr1.3:20592219-20592238 | None:intergenic | 35.0% | |
| AAGATTATATGCACTTGCAG+GGG | - | chr1.3:20591577-20591596 | MS.gene44571:intron | 35.0% | |
| ACTGCAAGCCATATGAAATT+TGG | + | chr1.3:20592436-20592455 | None:intergenic | 35.0% | |
| ATAGAGGATGTAACAGTGTT+TGG | - | chr1.3:20590327-20590346 | MS.gene44571:CDS | 35.0% | |
| CACAAAGCTTTACCAAAACA+TGG | - | chr1.3:20592252-20592271 | MS.gene44571:CDS | 35.0% | |
| CATGCTTAGACATATTGCTA+GGG | + | chr1.3:20592320-20592339 | None:intergenic | 35.0% | |
| CTAGGTCAAGTAATATGAGA+CGG | + | chr1.3:20590765-20590784 | None:intergenic | 35.0% | |
| GTTTATGCTCTCTCATCAAT+TGG | - | chr1.3:20590245-20590264 | MS.gene44571:CDS | 35.0% | |
| TACCAAGCATTAGACCAAAA+GGG | - | chr1.3:20591199-20591218 | MS.gene44571:intron | 35.0% | |
| TGACCATTCATGGGTAAAAT+GGG | - | chr1.3:20591321-20591340 | MS.gene44571:intron | 35.0% | |
| TGATGCAAAGGATGCAATAT+TGG | - | chr1.3:20591600-20591619 | MS.gene44571:intron | 35.0% | |
| TGGACCAACCTTTAGTAAAA+TGG | + | chr1.3:20592085-20592104 | None:intergenic | 35.0% | |
| TTAGACATATTGCTAGGGTT+TGG | + | chr1.3:20592315-20592334 | None:intergenic | 35.0% | |
| TTTGCATTGGATAAAGATGG+AGG | - | chr1.3:20590275-20590294 | MS.gene44571:CDS | 35.0% | |
| ! | ACAATCACTTTCCCATGTTT+TGG | + | chr1.3:20592267-20592286 | None:intergenic | 35.0% |
| ! | ACATGGGAAAGTGATTGTTT+TGG | - | chr1.3:20592269-20592288 | MS.gene44571:CDS | 35.0% |
| ! | ATCTCAACATTGGTTGATGT+TGG | - | chr1.3:20591784-20591803 | MS.gene44571:intron | 35.0% |
| ! | ATTCCCATTTTACCCATGAA+TGG | + | chr1.3:20591327-20591346 | None:intergenic | 35.0% |
| ! | CTCTCCCTCTATAATTTTAG+AGG | - | chr1.3:20591176-20591195 | MS.gene44571:intron | 35.0% |
| !! | ATGTTTGAAAGTGTTCCAAG+TGG | - | chr1.3:20592054-20592073 | MS.gene44571:intron | 35.0% |
| !!! | AAGTGAGCATTCTAGCTTTT+CGG | - | chr1.3:20590085-20590104 | MS.gene44571:CDS | 35.0% |
| !!! | CATGTTTTGGTAAAGCTTTG+TGG | + | chr1.3:20592254-20592273 | None:intergenic | 35.0% |
| !!! | GATGCCATTTTACTAAAGGT+TGG | - | chr1.3:20592078-20592097 | MS.gene44571:intron | 35.0% |
| !!! | TGGTGATGCCATTTTACTAA+AGG | - | chr1.3:20592074-20592093 | MS.gene44571:intron | 35.0% |
| ACCATCTTCATTGGTACGAA+TGG | + | chr1.3:20590213-20590232 | None:intergenic | 40.0% | |
| AGTAAAATGGCATCACCACT+TGG | + | chr1.3:20592072-20592091 | None:intergenic | 40.0% | |
| CTAGGTCAAGTAATATGGGA+TGG | - | chr1.3:20591101-20591120 | MS.gene44571:intron | 40.0% | |
| CTGACCATTCATGGGTAAAA+TGG | - | chr1.3:20591320-20591339 | MS.gene44571:intron | 40.0% | |
| GATAAAGATGGAGGCTCTTT+GGG | - | chr1.3:20590284-20590303 | MS.gene44571:CDS | 40.0% | |
| GCATGCTTAGACATATTGCT+AGG | + | chr1.3:20592321-20592340 | None:intergenic | 40.0% | |
| GTACCAAGCATTAGACCAAA+AGG | - | chr1.3:20591198-20591217 | MS.gene44571:intron | 40.0% | |
| GTCAAGTAATATGAGACGGA+TGG | + | chr1.3:20590761-20590780 | None:intergenic | 40.0% | |
| GTCAAGTAATATGGGATGGA+GGG | - | chr1.3:20591105-20591124 | MS.gene44571:intron | 40.0% | |
| TCCAAATCAACACCCTGAAT+TGG | - | chr1.3:20590130-20590149 | MS.gene44571:CDS | 40.0% | |
| TCCATTCGTACCAATGAAGA+TGG | - | chr1.3:20590209-20590228 | MS.gene44571:CDS | 40.0% | |
| TGCAGCTTGTATGTCATAAC+TGG | - | chr1.3:20592193-20592212 | MS.gene44571:intron | 40.0% | |
| ! | GCATAATTCAAGGACCCTTT+TGG | + | chr1.3:20591216-20591235 | None:intergenic | 40.0% |
| ! | TCAACATTGGTTGATGTTGG+AGG | - | chr1.3:20591787-20591806 | MS.gene44571:intron | 40.0% |
| ! | TTCTTTAGGAGTTAGGGCTA+GGG | - | chr1.3:20590666-20590685 | MS.gene44571:CDS | 40.0% |
| ! | TTTCTTTAGGAGTTAGGGCT+AGG | - | chr1.3:20590665-20590684 | MS.gene44571:CDS | 40.0% |
| AAACTCCATCACTCCAGACA+TGG | + | chr1.3:20592469-20592488 | None:intergenic | 45.0% | |
| CATACGTGACAGAGTCAACT+AGG | + | chr1.3:20590783-20590802 | None:intergenic | 45.0% | |
| GAGAGCTTATGTAAGAGAGC+TGG | - | chr1.3:20592405-20592424 | MS.gene44571:CDS | 45.0% | |
| GGATAAAGATGGAGGCTCTT+TGG | - | chr1.3:20590283-20590302 | MS.gene44571:CDS | 45.0% | |
| GGTCAAGTAATATGGGATGG+AGG | - | chr1.3:20591104-20591123 | MS.gene44571:intron | 45.0% | |
| TGGGGGATAGAGATGTAGTT+AGG | - | chr1.3:20591358-20591377 | MS.gene44571:intron | 45.0% | |
| ! | ACATTGGTTGATGTTGGAGG+TGG | - | chr1.3:20591790-20591809 | MS.gene44571:intron | 45.0% |
| ! | GACCCTTTTGGTCTAATGCT+TGG | + | chr1.3:20591204-20591223 | None:intergenic | 45.0% |
| ! | TCTTTAGGAGTTAGGGCTAG+GGG | - | chr1.3:20590667-20590686 | MS.gene44571:CDS | 45.0% |
| ! | TGAACGCATGTTGACTGTGT+TGG | - | chr1.3:20590163-20590182 | MS.gene44571:CDS | 45.0% |
| !! | GCCAATTCAGGGTGTTGATT+TGG | + | chr1.3:20590134-20590153 | None:intergenic | 45.0% |
| !!! | AAATATTAGATTTTTTTTTA+AGG | + | chr1.3:20592159-20592178 | None:intergenic | 5.0% |
| AACACCCTGAATTGGCTGAG+AGG | - | chr1.3:20590138-20590157 | MS.gene44571:CDS | 50.0% | |
| AACCAAGCAATGGGCCAATC+TGG | - | chr1.3:20591712-20591731 | MS.gene44571:intron | 50.0% | |
| AGTGATGTCTCAGCCATGTC+TGG | - | chr1.3:20592453-20592472 | MS.gene44571:CDS | 50.0% | |
| CAAGATGCACCTACTCATCC+AGG | - | chr1.3:20591892-20591911 | MS.gene44571:intron | 50.0% | |
| CAAGCCTCTCAGCCAATTCA+GGG | + | chr1.3:20590145-20590164 | None:intergenic | 50.0% | |
| CTTGTAGGGCTTGAGCATGT+TGG | - | chr1.3:20592024-20592043 | MS.gene44571:intron | 50.0% | |
| GGTGCATCTTGAACAGCTTG+TGG | + | chr1.3:20591883-20591902 | None:intergenic | 50.0% | |
| GTTGATGTTGGAGGTGGAGT+AGG | - | chr1.3:20591796-20591815 | MS.gene44571:intron | 50.0% | |
| TCAAGCCTCTCAGCCAATTC+AGG | + | chr1.3:20590146-20590165 | None:intergenic | 50.0% | |
| CACTTGCAGGGGTGATGCAA+AGG | - | chr1.3:20591588-20591607 | MS.gene44571:intron | 55.0% | |
| GTAGGGCTTGAGCATGTTGG+AGG | - | chr1.3:20592027-20592046 | MS.gene44571:intron | 55.0% | |
| TAGGAGTTAGGGCTAGGGGT+CGG | - | chr1.3:20590671-20590690 | MS.gene44571:CDS | 55.0% | |
| TTGCTAGGGTTTGGCACCTC+TGG | + | chr1.3:20592306-20592325 | None:intergenic | 55.0% | |
| ! | CTCAGCCATGTCTGGAGTGA+TGG | - | chr1.3:20592461-20592480 | MS.gene44571:CDS | 55.0% |
| ! | GTCCAGATTGGCCCATTGCT+TGG | + | chr1.3:20591717-20591736 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 20590069 | 20592497 | 20590069 | ID=MS.gene44571 |
| chr1.3 | mRNA | 20590069 | 20592497 | 20590069 | ID=MS.gene44571.t1;Parent=MS.gene44571 |
| chr1.3 | exon | 20592218 | 20592497 | 20592218 | ID=MS.gene44571.t1.exon1;Parent=MS.gene44571.t1 |
| chr1.3 | CDS | 20592218 | 20592497 | 20592218 | ID=cds.MS.gene44571.t1;Parent=MS.gene44571.t1 |
| chr1.3 | exon | 20590653 | 20590969 | 20590653 | ID=MS.gene44571.t1.exon2;Parent=MS.gene44571.t1 |
| chr1.3 | CDS | 20590653 | 20590969 | 20590653 | ID=cds.MS.gene44571.t1;Parent=MS.gene44571.t1 |
| chr1.3 | exon | 20590471 | 20590535 | 20590471 | ID=MS.gene44571.t1.exon3;Parent=MS.gene44571.t1 |
| chr1.3 | CDS | 20590471 | 20590535 | 20590471 | ID=cds.MS.gene44571.t1;Parent=MS.gene44571.t1 |
| chr1.3 | exon | 20590069 | 20590368 | 20590069 | ID=MS.gene44571.t1.exon4;Parent=MS.gene44571.t1 |
| chr1.3 | CDS | 20590069 | 20590368 | 20590069 | ID=cds.MS.gene44571.t1;Parent=MS.gene44571.t1 |
| Gene Sequence |
| Protein sequence |
