AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050559


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050559.t1 MTR_7g115690 97.765 358 8 0 1 358 1 358 0.0 711
MS.gene050559.t1 MTR_1g080250 81.006 358 65 1 1 358 42 396 0.0 583
MS.gene050559.t1 MTR_1g080250 81.006 358 65 1 1 358 16 370 0.0 582
MS.gene050559.t1 MTR_1g080250 81.006 358 65 1 1 358 1 355 0.0 582
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050559.t1 AT1G08630 73.639 349 92 0 1 349 1 349 0.0 551
MS.gene050559.t1 AT1G08630 73.639 349 92 0 1 349 1 349 0.0 551
MS.gene050559.t1 AT1G08630 73.639 349 92 0 1 349 1 349 0.0 551
MS.gene050559.t1 AT1G08630 73.639 349 92 0 1 349 1 349 0.0 551
MS.gene050559.t1 AT1G08630 73.639 349 92 0 1 349 1 349 0.0 551
MS.gene050559.t1 AT3G04520 74.419 344 88 0 4 347 8 351 0.0 536
MS.gene050559.t1 AT3G04520 74.419 344 88 0 4 347 8 351 0.0 536
MS.gene050559.t1 AT3G04520 74.419 344 87 1 4 347 8 350 0.0 531
MS.gene050559.t1 AT1G08630 71.633 349 85 1 1 349 1 335 0.0 523
MS.gene050559.t1 AT1G08630 73.636 330 87 0 20 349 1 330 0.0 521

Find 86 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACACTTTGTCGTGCTTTC+AGG 0.173516 7.4:-2140268 MS.gene050559:intron
CTACAAAATACTTACAATAT+TGG 0.205905 7.4:+2140645 None:intergenic
TCATTATTTCTAACTGTTCT+TGG 0.215838 7.4:+2142616 None:intergenic
GCACATCGCTATCTGATATT+TGG 0.274562 7.4:+2140292 None:intergenic
AACCACAAGGCTCATTTGTT+TGG 0.308683 7.4:-2142524 MS.gene050559:CDS
ATTGAAATTGAAGAGAATTC+AGG 0.311218 7.4:-2140527 MS.gene050559:CDS
GCCGGAGGACCAAATGAAAA+TGG 0.327784 7.4:-2140146 MS.gene050559:CDS
GGATAAACAAGCTCCCCTTT+TGG 0.339653 7.4:+2142547 None:intergenic
CATATTCATATTTATGAGAA+TGG 0.341156 7.4:-2142667 MS.gene050559:CDS
TCCAAGGACTTAGAAGAATA+TGG 0.358787 7.4:-2140485 MS.gene050559:CDS
GAAGAGATGGCAAAGATAAC+TGG 0.383719 7.4:-2142796 MS.gene050559:CDS
AGTGAACAAGCACAGATATA+AGG 0.384763 7.4:+2142731 None:intergenic
GGATTGAAGCTTCACATTGA+TGG 0.392047 7.4:-2141917 MS.gene050559:CDS
ATGTTGCAGCGTGCGGTTGC+CGG 0.393302 7.4:-2140164 MS.gene050559:intron
GCCATATTCTTCTAAGTCCT+TGG 0.397824 7.4:+2140484 None:intergenic
AGAGGGAGTGAAGTAATTCT+TGG 0.400194 7.4:-2142700 MS.gene050559:CDS
GTTTGCTTATCTAAAGGTAT+TGG 0.427009 7.4:-2141285 MS.gene050559:CDS
TCCTTGGATAGCTTTGCTGC+TGG 0.432710 7.4:+2140500 None:intergenic
CCAGTTGGATCTGTAATTGT+TGG 0.446162 7.4:-2141258 MS.gene050559:CDS
TTTGTCCCATCAGGCACTAT+GGG 0.452519 7.4:-2142757 MS.gene050559:CDS
GATTAGGTTTGCTTATCTAA+AGG 0.460763 7.4:-2141291 MS.gene050559:intron
ATTTGTTTGGAAAATTCTCA+TGG 0.463399 7.4:-2142511 MS.gene050559:CDS
GAGGTCGATGATGATGTTCT+TGG 0.472967 7.4:-2142847 MS.gene050559:CDS
GTTGAATATACAGAGAGAGT+TGG 0.482578 7.4:-2141959 MS.gene050559:CDS
ACAGTTAGAAATAATGAAGA+TGG 0.487457 7.4:-2142610 MS.gene050559:CDS
TAACTAGGACAGTGGATCTT+CGG 0.488854 7.4:-2142924 MS.gene050559:CDS
TGAAACAATGCGAGTTGCTA+TGG 0.491610 7.4:-2142878 MS.gene050559:CDS
TACCTTGGTTATAAAGCTGT+TGG 0.496036 7.4:+2141233 None:intergenic
TCTTCTAAGCGTAAACAAGA+AGG 0.503667 7.4:+2142817 None:intergenic
AATGGAGGCATTGCAACCCT+TGG 0.505718 7.4:-2142649 MS.gene050559:CDS
CTTGTTCACTGCGACATAAG+AGG 0.507878 7.4:-2142718 MS.gene050559:CDS
GGAGGCATTGCAACCCTTGG+AGG 0.509812 7.4:-2142646 MS.gene050559:CDS
CTGTCTCATTCCACCACCTA+AGG 0.510563 7.4:+2141096 None:intergenic
GGCATCCTTCTCATGCCAAT+CGG 0.513035 7.4:-2140464 MS.gene050559:CDS
CGCTATCTGATATTTGGTGG+TGG 0.515490 7.4:+2140298 None:intergenic
CATGGATATTGATTTGATTG+AGG 0.516490 7.4:-2142584 MS.gene050559:CDS
GCAACTCGCATTGTTTCAGT+TGG 0.519214 7.4:+2142883 None:intergenic
TTCTTGGATGTACACCTCCA+AGG 0.519508 7.4:+2142632 None:intergenic
CCAACAATTACAGATCCAAC+TGG 0.520070 7.4:+2141258 None:intergenic
CAAAATGGTAACTAGGACAG+TGG 0.520303 7.4:-2142932 None:intergenic
CTGCAATTAGAGATCCAAAA+GGG 0.526811 7.4:-2142561 MS.gene050559:CDS
CACTTGGTGTTCCTGTGGAT+AGG 0.527788 7.4:-2141760 MS.gene050559:CDS
AGAAGGCTCAGAAAGACCTT+AGG 0.529362 7.4:-2141112 MS.gene050559:CDS
CATCGCTATCTGATATTTGG+TGG 0.529995 7.4:+2140295 None:intergenic
CTTAGGTGGTGGAATGAGAC+AGG 0.531990 7.4:-2141095 MS.gene050559:CDS
TCAGGCACTTGGTGTTCCTG+TGG 0.542119 7.4:-2141765 MS.gene050559:intron
TTGCAGACAAAATGGTAACT+AGG 0.544552 7.4:-2142939 None:intergenic
TCTTGGATGTACACCTCCAA+GGG 0.546880 7.4:+2142633 None:intergenic
CTCAGAAAGACCTTAGGTGG+TGG 0.554851 7.4:-2141106 MS.gene050559:CDS
CTCAATCAAATCAATATCCA+TGG 0.555497 7.4:+2142585 None:intergenic
TGAAATCAAAGGACTGAGAG+TGG 0.556209 7.4:-2140686 MS.gene050559:CDS
AAAGGTATTGGTGCTCCAGT+TGG 0.559792 7.4:-2141273 MS.gene050559:CDS
AATATTGGTTTCCACAGAAG+AGG 0.561141 7.4:+2140660 None:intergenic
TTTACGCTTAGAAGAAGAGA+TGG 0.562019 7.4:-2142809 MS.gene050559:CDS
GGTTCCCCATAGTGCCTGAT+GGG 0.562284 7.4:+2142752 None:intergenic
TTGCAGCGTGCGGTTGCCGG+AGG 0.565456 7.4:-2140161 MS.gene050559:intron
GATGGATTGAATGAAATCAA+AGG 0.567749 7.4:-2140697 MS.gene050559:CDS
ATATACAGAGAGAGTTGGAG+AGG 0.569205 7.4:-2141954 MS.gene050559:CDS
AACTGAAAGGCATCTACCAC+CGG 0.571112 7.4:+2141979 None:intergenic
AGGTTCCCCATAGTGCCTGA+TGG 0.574535 7.4:+2142751 None:intergenic
TCATGCCAATCGGATCATCA+AGG 0.575646 7.4:-2140454 MS.gene050559:intron
AAACAAATGAGCCTTGTGGT+TGG 0.579817 7.4:+2142526 None:intergenic
GGTGGTGGAATGAGACAGGT+TGG 0.583127 7.4:-2141091 MS.gene050559:CDS
AGCGTAAACAAGAAGGGTCG+CGG 0.584966 7.4:+2142824 None:intergenic
TTCCAACAGCTTTATAACCA+AGG 0.590972 7.4:-2141235 MS.gene050559:intron
GCTGCAATTAGAGATCCAAA+AGG 0.591600 7.4:-2142562 MS.gene050559:CDS
CTTCTAAGCGTAAACAAGAA+GGG 0.596464 7.4:+2142818 None:intergenic
GGAGAGGTTGCTAAGAAGCA+CGG 0.596469 7.4:-2141938 MS.gene050559:CDS
CAAGACCTTGATGATCCGAT+TGG 0.596889 7.4:+2140449 None:intergenic
ATTCATATTTATGAGAATGG+AGG 0.597452 7.4:-2142664 MS.gene050559:CDS
TTCCAAACAAATGAGCCTTG+TGG 0.608620 7.4:+2142522 None:intergenic
TTGTTCACTGCGACATAAGA+GGG 0.608669 7.4:-2142717 MS.gene050559:CDS
TGTGGATAGGCTTGTTCGAG+CGG 0.608773 7.4:-2141747 MS.gene050559:CDS
TCCAGCAGCAAAGCTATCCA+AGG 0.609285 7.4:-2140501 MS.gene050559:CDS
AGGCTCAGAAAGACCTTAGG+TGG 0.612425 7.4:-2141109 MS.gene050559:CDS
TTTCCTGAATGCAGCACCGG+TGG 0.617194 7.4:-2141995 MS.gene050559:intron
GAGAGTGGATACCTCTTCTG+TGG 0.618793 7.4:-2140671 MS.gene050559:CDS
GCTCGAACAAGCCTATCCAC+AGG 0.622305 7.4:+2141749 None:intergenic
TCTCTGTATATTCAACTGAA+AGG 0.625952 7.4:+2141966 None:intergenic
ATGATCCGATTGGCATGAGA+AGG 0.633762 7.4:+2140459 None:intergenic
AAATAATGAAGATGGAACCA+TGG 0.634516 7.4:-2142602 MS.gene050559:CDS
CAACAAGTGCAGCTGCACAA+AGG 0.642170 7.4:+2141065 None:intergenic
TTGTCCCATCAGGCACTATG+GGG 0.644998 7.4:-2142756 MS.gene050559:CDS
AGCTTGTTTATCCAACCACA+AGG 0.653076 7.4:-2142537 MS.gene050559:CDS
AGTTGCTATGGCAAACGCTG+AGG 0.668418 7.4:-2142866 MS.gene050559:CDS
TGCAATTAGAGATCCAAAAG+GGG 0.670578 7.4:-2142560 MS.gene050559:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAACTTTACATTATTAAAA+AGG + chr7.4:2140988-2141007 None:intergenic 10.0%
!! CTTTGAATATATATATGATT+AGG - chr7.4:2141760-2141779 MS.gene050559:CDS 15.0%
!! GAGTAAATTACTTTAATAAA+AGG + chr7.4:2142686-2142705 None:intergenic 15.0%
!!! ACTAATTCATTTTATAACTA+AGG - chr7.4:2140932-2140951 MS.gene050559:intron 15.0%
!!! TATATTTCTTTTCTTTTTCT+TGG - chr7.4:2142850-2142869 MS.gene050559:CDS 15.0%
!! AGTTAGAGGAAAAAATTTAA+AGG + chr7.4:2142341-2142360 None:intergenic 20.0%
!! ATGTCAATACTTATTCTTAT+TGG - chr7.4:2141602-2141621 MS.gene050559:intron 20.0%
!! ATTACCAAATTCAAATCAAA+AGG - chr7.4:2141708-2141727 MS.gene050559:intron 20.0%
!! CATATTCATATTTATGAGAA+TGG - chr7.4:2140400-2140419 MS.gene050559:intron 20.0%
!! CTACAAAATACTTACAATAT+TGG + chr7.4:2142425-2142444 None:intergenic 20.0%
!! CTTCAATTTCAATATATATC+TGG + chr7.4:2142533-2142552 None:intergenic 20.0%
!! GTTAGAGGAAAAAATTTAAA+GGG + chr7.4:2142340-2142359 None:intergenic 20.0%
!! TGTGTAGAAAATGTAAATAA+TGG + chr7.4:2140824-2140843 None:intergenic 20.0%
!!! ATAACCTTTTGATTTGAATT+TGG + chr7.4:2141715-2141734 None:intergenic 20.0%
!!! ATTATTATCAGTTTTGTGTT+TGG + chr7.4:2142136-2142155 None:intergenic 20.0%
!!! GTATGTATATATGCTATTTT+AGG - chr7.4:2141930-2141949 MS.gene050559:CDS 20.0%
!!! TTTTTGTGTCTTTATTTGAT+AGG + chr7.4:2142109-2142128 None:intergenic 20.0%
! AAAGTTAAGAATTCCTTCAA+TGG - chr7.4:2141000-2141019 MS.gene050559:intron 25.0%
! ACAGTTAGAAATAATGAAGA+TGG - chr7.4:2140457-2140476 MS.gene050559:CDS 25.0%
! ACTAGTATGAATGAAATGAA+TGG + chr7.4:2142451-2142470 None:intergenic 25.0%
! ATAATATAGACAACCATTGA+AGG + chr7.4:2141016-2141035 None:intergenic 25.0%
! ATATCGCTGAAATAATAGAA+AGG - chr7.4:2140659-2140678 MS.gene050559:intron 25.0%
! ATGTTCCATAGTTAGAAAAA+AGG - chr7.4:2141424-2141443 MS.gene050559:intron 25.0%
! ATTCATATTTATGAGAATGG+AGG - chr7.4:2140403-2140422 MS.gene050559:intron 25.0%
! ATTGAAATTGAAGAGAATTC+AGG - chr7.4:2142540-2142559 MS.gene050559:CDS 25.0%
! ATTTCATTCAATCCATCTAA+AGG + chr7.4:2142367-2142386 None:intergenic 25.0%
! ATTTGTTTGGAAAATTCTCA+TGG - chr7.4:2140556-2140575 MS.gene050559:intron 25.0%
! GAAATATATACAGCAAAACA+AGG + chr7.4:2142838-2142857 None:intergenic 25.0%
! GTTTATATATACATGATAGC+AGG + chr7.4:2141256-2141275 None:intergenic 25.0%
! TATTCAAAGTAATCACAAGT+TGG + chr7.4:2141749-2141768 None:intergenic 25.0%
! TCATTTATAACCACATTTGT+TGG - chr7.4:2142176-2142195 MS.gene050559:intron 25.0%
!! TCTTTTACCTTCTCTTTTAT+TGG - chr7.4:2141367-2141386 MS.gene050559:intron 25.0%
!!! AACATCCTTTTTTCTAACTA+TGG + chr7.4:2141432-2141451 None:intergenic 25.0%
!!! ACAGAAAATTTTGGTTTTTC+AGG - chr7.4:2141284-2141303 MS.gene050559:CDS 25.0%
!!! ATAACGATTTTGAAATACCT+TGG + chr7.4:2141852-2141871 None:intergenic 25.0%
!!! TAGTAATGTTTTGTTGGATA+CGG - chr7.4:2140612-2140631 MS.gene050559:intron 25.0%
!!! TCATTATTTCTAACTGTTCT+TGG + chr7.4:2140454-2140473 None:intergenic 25.0%
AAATAATGAAGATGGAACCA+TGG - chr7.4:2140465-2140484 MS.gene050559:CDS 30.0%
AAGTACAGTAAAAACATGCT+AGG + chr7.4:2140801-2140820 None:intergenic 30.0%
ATCATGTCCAATAAAAGAGA+AGG + chr7.4:2141377-2141396 None:intergenic 30.0%
CAACATTGTAAAGAACATAC+CGG + chr7.4:2142085-2142104 None:intergenic 30.0%
CAACATTTAGTATAGTGTCA+TGG - chr7.4:2141657-2141676 MS.gene050559:intron 30.0%
CATGACACTATACTAAATGT+TGG + chr7.4:2141659-2141678 None:intergenic 30.0%
CTCAATCAAATCAATATCCA+TGG + chr7.4:2140485-2140504 None:intergenic 30.0%
GCTCATAGTTTACTGATAAA+TGG - chr7.4:2140634-2140653 MS.gene050559:intron 30.0%
GGTGTTAAGTAGATGTTAAT+TGG - chr7.4:2142261-2142280 MS.gene050559:intron 30.0%
TCTCTGTATATTCAACTGAA+AGG + chr7.4:2141104-2141123 None:intergenic 30.0%
TCTTATCGTATCAGTTTCAT+TGG - chr7.4:2142713-2142732 MS.gene050559:CDS 30.0%
TGAAATTGTGATATACTTGC+TGG - chr7.4:2141477-2141496 MS.gene050559:intron 30.0%
! CAACTCATGACAGAAAATTT+TGG - chr7.4:2141275-2141294 MS.gene050559:CDS 30.0%
! CTTTTATTGGACATGATTCT+TGG - chr7.4:2141380-2141399 MS.gene050559:intron 30.0%
! GATTAGGTTTGCTTATCTAA+AGG - chr7.4:2141776-2141795 MS.gene050559:intron 30.0%
! GTTTGCTTATCTAAAGGTAT+TGG - chr7.4:2141782-2141801 MS.gene050559:intron 30.0%
! TCACAAGAATGCTAGATTTT+TGG - chr7.4:2142059-2142078 MS.gene050559:intron 30.0%
! TCACTCTAGTAATGTTTTGT+TGG - chr7.4:2140606-2140625 MS.gene050559:intron 30.0%
! TTTTATAGCCCTTCATTCAA+AGG + chr7.4:2140874-2140893 None:intergenic 30.0%
!! CATGGATATTGATTTGATTG+AGG - chr7.4:2140483-2140502 MS.gene050559:CDS 30.0%
!! GATGGATTGAATGAAATCAA+AGG - chr7.4:2142370-2142389 MS.gene050559:intron 30.0%
!!! ATATGCTATTTTAGGCTAGA+AGG - chr7.4:2141938-2141957 MS.gene050559:CDS 30.0%
ACAACAAACACCAACAAATG+TGG + chr7.4:2142189-2142208 None:intergenic 35.0%
AGTGAACAAGCACAGATATA+AGG + chr7.4:2140339-2140358 None:intergenic 35.0%
CTGCAATTAGAGATCCAAAA+GGG - chr7.4:2140506-2140525 MS.gene050559:CDS 35.0%
CTTCTAAGCGTAAACAAGAA+GGG + chr7.4:2140252-2140271 None:intergenic 35.0%
GTTGAATATACAGAGAGAGT+TGG - chr7.4:2141108-2141127 MS.gene050559:CDS 35.0%
TACCTTGGTTATAAAGCTGT+TGG + chr7.4:2141837-2141856 None:intergenic 35.0%
TCCAAGGACTTAGAAGAATA+TGG - chr7.4:2142582-2142601 MS.gene050559:CDS 35.0%
TCTTCTAAGCGTAAACAAGA+AGG + chr7.4:2140253-2140272 None:intergenic 35.0%
TGCAATTAGAGATCCAAAAG+GGG - chr7.4:2140507-2140526 MS.gene050559:CDS 35.0%
TTCTAACCAAGAAACATCTC+AGG + chr7.4:2141506-2141525 None:intergenic 35.0%
TTTACGCTTAGAAGAAGAGA+TGG - chr7.4:2140258-2140277 MS.gene050559:intron 35.0%
! GTCATGGCAATGACAATTTT+AGG - chr7.4:2141673-2141692 MS.gene050559:intron 35.0%
! TTCCAACAGCTTTATAACCA+AGG - chr7.4:2141832-2141851 MS.gene050559:intron 35.0%
! TTCTTCAACCTTGAAGTACT+CGG - chr7.4:2141531-2141550 MS.gene050559:intron 35.0%
!! AATATTGGTTTCCACAGAAG+AGG + chr7.4:2142410-2142429 None:intergenic 35.0%
!! CAGCTTTGAGTTCTTTAATC+TGG - chr7.4:2141228-2141247 MS.gene050559:intron 35.0%
!! TTGTTGGTGTTTGTTGTTCT+CGG - chr7.4:2142192-2142211 MS.gene050559:intron 35.0%
!!! AAGAATGCTAGATTTTTGGC+CGG - chr7.4:2142063-2142082 MS.gene050559:intron 35.0%
!!! ATTTTGGTTTTTCAGGCACT+TGG - chr7.4:2141291-2141310 MS.gene050559:intron 35.0%
AACCACAAGGCTCATTTGTT+TGG - chr7.4:2140543-2140562 MS.gene050559:intron 40.0%
AGAGGGAGTGAAGTAATTCT+TGG - chr7.4:2140367-2140386 MS.gene050559:intron 40.0%
ATACACTTTGTCGTGCTTTC+AGG - chr7.4:2142799-2142818 MS.gene050559:CDS 40.0%
ATATACAGAGAGAGTTGGAG+AGG - chr7.4:2141113-2141132 MS.gene050559:CDS 40.0%
CATCGCTATCTGATATTTGG+TGG + chr7.4:2142775-2142794 None:intergenic 40.0%
CCAACAATTACAGATCCAAC+TGG + chr7.4:2141812-2141831 None:intergenic 40.0%
CCAGTTGGATCTGTAATTGT+TGG - chr7.4:2141809-2141828 MS.gene050559:intron 40.0%
CCATCTAAAGGACAAGTTAG+AGG + chr7.4:2142355-2142374 None:intergenic 40.0%
CGATATTTGTTCACGGAGTT+CGG + chr7.4:2140726-2140745 None:intergenic 40.0%
GAAGAGATGGCAAAGATAAC+TGG - chr7.4:2140271-2140290 MS.gene050559:CDS 40.0%
GAGCACACGATATTTGTTCA+CGG + chr7.4:2140733-2140752 None:intergenic 40.0%
GCACATCGCTATCTGATATT+TGG + chr7.4:2142778-2142797 None:intergenic 40.0%
GCCATATTCTTCTAAGTCCT+TGG + chr7.4:2142586-2142605 None:intergenic 40.0%
GCTGCAATTAGAGATCCAAA+AGG - chr7.4:2140505-2140524 MS.gene050559:CDS 40.0%
GGATTGAAGCTTCACATTGA+TGG - chr7.4:2141150-2141169 MS.gene050559:intron 40.0%
TAACTAGGACAGTGGATCTT+CGG - chr7.4:2140143-2140162 MS.gene050559:CDS 40.0%
TGAAACAATGCGAGTTGCTA+TGG - chr7.4:2140189-2140208 MS.gene050559:intron 40.0%
TGAAATCAAAGGACTGAGAG+TGG - chr7.4:2142381-2142400 MS.gene050559:intron 40.0%
TGGTTTCCTGAGATGTTTCT+TGG - chr7.4:2141497-2141516 MS.gene050559:intron 40.0%
TTATTGAATGTTGCAGCGTG+CGG - chr7.4:2142896-2142915 MS.gene050559:CDS 40.0%
TTCCAAACAAATGAGCCTTG+TGG + chr7.4:2140548-2140567 None:intergenic 40.0%
TTGTTCACTGCGACATAAGA+GGG - chr7.4:2140350-2140369 MS.gene050559:intron 40.0%
! AAACAAATGAGCCTTGTGGT+TGG + chr7.4:2140544-2140563 None:intergenic 40.0%
! AGCTTGTTTATCCAACCACA+AGG - chr7.4:2140530-2140549 MS.gene050559:CDS 40.0%
! CCTCTAACTTGTCCTTTAGA+TGG - chr7.4:2142352-2142371 MS.gene050559:intron 40.0%
! CTTCAAACAGACTAGCTAGT+AGG + chr7.4:2142299-2142318 None:intergenic 40.0%
! TCCATTTTCATTTGGTCCTC+CGG + chr7.4:2142925-2142944 None:intergenic 40.0%
AACGGACACCCTTCAATATC+AGG - chr7.4:2142234-2142253 MS.gene050559:intron 45.0%
ACGGACACCCTTCAATATCA+GGG - chr7.4:2142235-2142254 MS.gene050559:intron 45.0%
ACTCTGCTGCCTTTGAATGA+AGG - chr7.4:2140862-2140881 MS.gene050559:intron 45.0%
AGAAGGCTCAGAAAGACCTT+AGG - chr7.4:2141955-2141974 MS.gene050559:CDS 45.0%
ATGATCCGATTGGCATGAGA+AGG + chr7.4:2142611-2142630 None:intergenic 45.0%
CACTGACACATGTTGGACAA+CGG - chr7.4:2142216-2142235 MS.gene050559:intron 45.0%
CTCTGCTGCCTTTGAATGAA+GGG - chr7.4:2140863-2140882 MS.gene050559:intron 45.0%
CTTGTTCACTGCGACATAAG+AGG - chr7.4:2140349-2140368 MS.gene050559:intron 45.0%
GCAACTCGCATTGTTTCAGT+TGG + chr7.4:2140187-2140206 None:intergenic 45.0%
TACTGCAACTACTCTGCAGT+CGG - chr7.4:2140682-2140701 MS.gene050559:CDS 45.0%
TCATGCCAATCGGATCATCA+AGG - chr7.4:2142613-2142632 MS.gene050559:CDS 45.0%
TCTTGGATGTACACCTCCAA+GGG + chr7.4:2140437-2140456 None:intergenic 45.0%
TTCTTGGATGTACACCTCCA+AGG + chr7.4:2140438-2140457 None:intergenic 45.0%
TTGTTTCCTGAATGCAGCAC+CGG - chr7.4:2141069-2141088 MS.gene050559:CDS 45.0%
TTTGTCCCATCAGGCACTAT+GGG - chr7.4:2140310-2140329 MS.gene050559:CDS 45.0%
! CAAGACCTTGATGATCCGAT+TGG + chr7.4:2142621-2142640 None:intergenic 45.0%
! CGCTATCTGATATTTGGTGG+TGG + chr7.4:2142772-2142791 None:intergenic 45.0%
! GAGGTCGATGATGATGTTCT+TGG - chr7.4:2140220-2140239 MS.gene050559:intron 45.0%
! GGATAAACAAGCTCCCCTTT+TGG + chr7.4:2140523-2140542 None:intergenic 45.0%
! TCGTGCTTTCAGGTGATGAT+CGG - chr7.4:2142809-2142828 MS.gene050559:CDS 45.0%
! TTTTGTCCCATCAGGCACTA+TGG - chr7.4:2140309-2140328 MS.gene050559:CDS 45.0%
!! AAAGGTATTGGTGCTCCAGT+TGG - chr7.4:2141794-2141813 MS.gene050559:intron 45.0%
!! AACTGAAAGGCATCTACCAC+CGG + chr7.4:2141091-2141110 None:intergenic 45.0%
ACACCGACCCCTGATATTGA+AGG + chr7.4:2142246-2142265 None:intergenic 50.0%
AGCGTAAACAAGAAGGGTCG+CGG + chr7.4:2140246-2140265 None:intergenic 50.0%
AGGCTCAGAAAGACCTTAGG+TGG - chr7.4:2141958-2141977 MS.gene050559:CDS 50.0%
AGTTGCTATGGCAAACGCTG+AGG - chr7.4:2140201-2140220 MS.gene050559:intron 50.0%
CAACAAGTGCAGCTGCACAA+AGG + chr7.4:2142005-2142024 None:intergenic 50.0%
CACCCTTCAATATCAGGGGT+CGG - chr7.4:2142240-2142259 MS.gene050559:intron 50.0%
CACCGACCCCTGATATTGAA+GGG + chr7.4:2142245-2142264 None:intergenic 50.0%
CGGACACCCTTCAATATCAG+GGG - chr7.4:2142236-2142255 MS.gene050559:intron 50.0%
CTCAGAAAGACCTTAGGTGG+TGG - chr7.4:2141961-2141980 MS.gene050559:CDS 50.0%
CTGTCTCATTCCACCACCTA+AGG + chr7.4:2141974-2141993 None:intergenic 50.0%
GAGAGTGGATACCTCTTCTG+TGG - chr7.4:2142396-2142415 MS.gene050559:intron 50.0%
GCCGGAGGACCAAATGAAAA+TGG - chr7.4:2142921-2142940 MS.gene050559:CDS 50.0%
GCTTCGAACCGAGTACTTCA+AGG + chr7.4:2141542-2141561 None:intergenic 50.0%
GGAGAGGTTGCTAAGAAGCA+CGG - chr7.4:2141129-2141148 MS.gene050559:intron 50.0%
GGCATCCTTCTCATGCCAAT+CGG - chr7.4:2142603-2142622 MS.gene050559:CDS 50.0%
GTCGGAGATGTAGGCAGAAT+TGG - chr7.4:2140700-2140719 MS.gene050559:intron 50.0%
TACTCTGCAGTCGGAGATGT+AGG - chr7.4:2140691-2140710 MS.gene050559:CDS 50.0%
TCCAGCAGCAAAGCTATCCA+AGG - chr7.4:2142566-2142585 MS.gene050559:CDS 50.0%
TCTCGGACACTGACACATGT+TGG - chr7.4:2142209-2142228 MS.gene050559:intron 50.0%
TTGTCCCATCAGGCACTATG+GGG - chr7.4:2140311-2140330 MS.gene050559:CDS 50.0%
! GCTGCTCTTTTTGTCCCATC+AGG - chr7.4:2140301-2140320 MS.gene050559:CDS 50.0%
! TCCTTGGATAGCTTTGCTGC+TGG + chr7.4:2142570-2142589 None:intergenic 50.0%
! TGTGGATAGGCTTGTTCGAG+CGG - chr7.4:2141320-2141339 MS.gene050559:intron 50.0%
!! AATGGAGGCATTGCAACCCT+TGG - chr7.4:2140418-2140437 MS.gene050559:intron 50.0%
!! CACTTGGTGTTCCTGTGGAT+AGG - chr7.4:2141307-2141326 MS.gene050559:intron 50.0%
!! CTTAGGTGGTGGAATGAGAC+AGG - chr7.4:2141972-2141991 MS.gene050559:CDS 50.0%
AGGTTCCCCATAGTGCCTGA+TGG + chr7.4:2140319-2140338 None:intergenic 55.0%
GCTCGAACAAGCCTATCCAC+AGG + chr7.4:2141321-2141340 None:intergenic 55.0%
GGTTCCCCATAGTGCCTGAT+GGG + chr7.4:2140318-2140337 None:intergenic 55.0%
! TTTCCTGAATGCAGCACCGG+TGG - chr7.4:2141072-2141091 MS.gene050559:CDS 55.0%
!! GGTGGTGGAATGAGACAGGT+TGG - chr7.4:2141976-2141995 MS.gene050559:CDS 55.0%
!! TCAGGCACTTGGTGTTCCTG+TGG - chr7.4:2141302-2141321 MS.gene050559:intron 55.0%
ATGTTGCAGCGTGCGGTTGC+CGG - chr7.4:2142903-2142922 MS.gene050559:CDS 60.0%
!! CTACCACCGGTGCTGCATTC+AGG + chr7.4:2141078-2141097 None:intergenic 60.0%
!! GGAGGCATTGCAACCCTTGG+AGG - chr7.4:2140421-2140440 MS.gene050559:intron 60.0%
TTGCAGCGTGCGGTTGCCGG+AGG - chr7.4:2142906-2142925 MS.gene050559:CDS 70.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 2140139 2142950 2140139 ID=MS.gene050559
chr7.4 mRNA 2140139 2142950 2140139 ID=MS.gene050559.t1;Parent=MS.gene050559
chr7.4 exon 2142508 2142950 2142508 ID=MS.gene050559.t1.exon1;Parent=MS.gene050559.t1
chr7.4 CDS 2142508 2142950 2142508 ID=cds.MS.gene050559.t1;Parent=MS.gene050559.t1
chr7.4 exon 2141892 2142003 2141892 ID=MS.gene050559.t1.exon2;Parent=MS.gene050559.t1
chr7.4 CDS 2141892 2142003 2141892 ID=cds.MS.gene050559.t1;Parent=MS.gene050559.t1
chr7.4 exon 2141733 2141783 2141733 ID=MS.gene050559.t1.exon3;Parent=MS.gene050559.t1
chr7.4 CDS 2141733 2141783 2141733 ID=cds.MS.gene050559.t1;Parent=MS.gene050559.t1
chr7.4 exon 2141236 2141307 2141236 ID=MS.gene050559.t1.exon4;Parent=MS.gene050559.t1
chr7.4 CDS 2141236 2141307 2141236 ID=cds.MS.gene050559.t1;Parent=MS.gene050559.t1
chr7.4 exon 2141005 2141137 2141005 ID=MS.gene050559.t1.exon5;Parent=MS.gene050559.t1
chr7.4 CDS 2141005 2141137 2141005 ID=cds.MS.gene050559.t1;Parent=MS.gene050559.t1
chr7.4 exon 2140660 2140718 2140660 ID=MS.gene050559.t1.exon6;Parent=MS.gene050559.t1
chr7.4 CDS 2140660 2140718 2140660 ID=cds.MS.gene050559.t1;Parent=MS.gene050559.t1
chr7.4 exon 2140455 2140555 2140455 ID=MS.gene050559.t1.exon7;Parent=MS.gene050559.t1
chr7.4 CDS 2140455 2140555 2140455 ID=cds.MS.gene050559.t1;Parent=MS.gene050559.t1
chr7.4 exon 2140269 2140335 2140269 ID=MS.gene050559.t1.exon8;Parent=MS.gene050559.t1
chr7.4 CDS 2140269 2140335 2140269 ID=cds.MS.gene050559.t1;Parent=MS.gene050559.t1
chr7.4 exon 2140139 2140177 2140139 ID=MS.gene050559.t1.exon9;Parent=MS.gene050559.t1
chr7.4 CDS 2140139 2140177 2140139 ID=cds.MS.gene050559.t1;Parent=MS.gene050559.t1
Gene Sequence

>MS.gene050559

ATGGTAACTAGGACAGTGGATCTTCGGTCAGATACAGTCACAAAACCAACTGAAACAATGCGAGTTGCTATGGCAAACGCTGAGGTCGATGATGATGTTCTTGGCCGCGACCCTTCTTGTTTACGCTTAGAAGAAGAGATGGCAAAGATAACTGGCAAAGAAGCTGCTCTTTTTGTCCCATCAGGCACTATGGGGAACCTTATATCTGTGCTTGTTCACTGCGACATAAGAGGGAGTGAAGTAATTCTTGGAGACAATTCACATATTCATATTTATGAGAATGGAGGCATTGCAACCCTTGGAGGTGTACATCCAAGAACAGTTAGAAATAATGAAGATGGAACCATGGATATTGATTTGATTGAGGCTGCAATTAGAGATCCAAAAGGGGAGCTTGTTTATCCAACCACAAGGCTCATTTGTTTGGAAAATTCTCATGGAAAGTAAGCATTTCTTTGATCAAAGTTTCACTCTAGTAATGTTTTGTTGGATACGGCTCATAGTTTACTGATAAATGGACATATCGCTGAAATAATAGAAAGGTACTGCAACTACTCTGCAGTCGGAGATGTAGGCAGAATTGGCCGAACTCCGTGAACAAATATCGTGTGCTCTTTGTATTTTCGTTTATCACATATGTTTTCTTTTGACTTTGCTGTCCTAGCATGTTTTTACTGTACTTCCATTATTTACATTTTCTACACAGCACATTGTTGCTTTTATACTCTGCTGCCTTTGAATGAAGGGCTATAAAATGATTTAGTTTATAAGATGATTCATAAACATTTTATAAACTAATTCATTTTATAACTAAGGTATATGTTGATTGTTCAAGCAAAAATGTTGCCTTTTTAATAATGTAAAGTTAAGAATTCCTTCAATGGTTGTCTATATTATATAATGCATTCACAGTATGAATGATTGAAACTTTTGTTTCCTGAATGCAGCACCGGTGGTAGATGCCTTTCAGTTGAATATACAGAGAGAGTTGGAGAGGTTGCTAAGAAGCACGGATTGAAGCTTCACATTGATGGAGCTCGTATATTTAATGCATCAGTTGTGAGTAACTTTTGTCATTTATAATAAACACAGCTTTGAGTTCTTTAATCTGGCTCCTGCTATCATGTATATATAAACAACTCATGACAGAAAATTTTGGTTTTTCAGGCACTTGGTGTTCCTGTGGATAGGCTTGTTCGAGCGGCTGATTCAGTGTCAGTATGTGTCTTCTTTTACCTTCTCTTTTATTGGACATGATTCTTGGAAAGACTCTTCTAGAGTAAATATGTTCCATAGTTAGAAAAAAGGATGTTTCTGTTCTTCGATTATATAACAGATTGAAATTGTGATATACTTGCTGGTTTCCTGAGATGTTTCTTGGTTAGAAGTTCATTCTTCAACCTTGAAGTACTCGGTTCGAAGCTAGCACAATTAATTTTTCGATATACTCAAGACTAAATTAAATGTCAATACTTATTCTTATTGGATCACTTTAGAAATAAACTCTAGAGTTTTTGCCAACATTTAGTATAGTGTCATGGCAATGACAATTTTAGGTATCTTAATGTAATTACCAAATTCAAATCAAAAGGTTATATATGAACTAACCAACTTGTGATTACTTTGAATATATATATGATTAGGTTTGCTTATCTAAAGGTATTGGTGCTCCAGTTGGATCTGTAATTGTTGGTTCCAACAGCTTTATAACCAAGGTATTTCAAAATCGTTATTGCGAGTACGATAAAAGTGATATCATTCTTTCTGAAAGAACTTGATATTATAACTTTTGTATGTATATATGCTATTTTAGGCTAGAAGGCTCAGAAAGACCTTAGGTGGTGGAATGAGACAGGTTGGCATCCTTTGTGCAGCTGCACTTGTTGCATTACATGAAAATGTTGAAAAGCTAGAAAGTGATCACAAGAATGCTAGATTTTTGGCCGGTATGTTCTTTACAATGTTGACCTATCAAATAAAGACACAAAAATGAACCAAACACAAAACTGATAATAATTTAATAAAATAGAAGTAAATTCATTTATAACCACATTTGTTGGTGTTTGTTGTTCTCGGACACTGACACATGTTGGACAACGGACACCCTTCAATATCAGGGGTCGGTGTTAAGTAGATGTTAATTGGTTCACAAGCAATCCTACTAGCTAGTCTGTTTGAAGAAGTACAATTTAAACACACCCTTTAAATTTTTTCCTCTAACTTGTCCTTTAGATGGATTGAATGAAATCAAAGGACTGAGAGTGGATACCTCTTCTGTGGAAACCAATATTGTAAGTATTTTGTAGAGTCCATTCATTTCATTCATACTAGTACAACAATTGCATTATTATTTCTCTGATTACTTTTGTGTTTAATCAATAATCTCTGATACCAGATATATATTGAAATTGAAGAGAATTCAGGAACTCCAGCAGCAAAGCTATCCAAGGACTTAGAAGAATATGGCATCCTTCTCATGCCAATCGGATCATCAAGGTCTTGTCTGTCACACTCTGCATTGTTACTAATAATATTATTGATTAACCTTTTATTAAAGTAATTTACTCATATGAATCTTATCGTATCAGTTTCATTGGTTCATTTTCTCTTGACAGATTGAGAGTTGTATTCCACCACCAAATATCAGATAGCGATGTGCGATACACTTTGTCGTGCTTTCAGGTGATGATCGGTCTCCTTGTTTTGCTGTATATATTTCTTTTCTTTTTCTTGGTATATATTTTATGTTTCATGATTTTATTGAATGTTGCAGCGTGCGGTTGCCGGAGGACCAAATGAAAATGGAAACTAG

Protein sequence

>MS.gene050559.t1

MVTRTVDLRSDTVTKPTETMRVAMANAEVDDDVLGRDPSCLRLEEEMAKITGKEAALFVPSGTMGNLISVLVHCDIRGSEVILGDNSHIHIYENGGIATLGGVHPRTVRNNEDGTMDIDLIEAAIRDPKGELVYPTTRLICLENSHGNTGGRCLSVEYTERVGEVAKKHGLKLHIDGARIFNASVALGVPVDRLVRAADSVSVCLSKGIGAPVGSVIVGSNSFITKARRLRKTLGGGMRQVGILCAAALVALHENVEKLESDHKNARFLADGLNEIKGLRVDTSSVETNIIYIEIEENSGTPAAKLSKDLEEYGILLMPIGSSRLRVVFHHQISDSDVRYTLSCFQRAVAGGPNENGN