AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050562


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050562.t1 MTR_7g115690 97.765 358 8 0 1 358 1 358 0.0 711
MS.gene050562.t1 MTR_1g080250 81.006 358 65 1 1 358 42 396 0.0 583
MS.gene050562.t1 MTR_1g080250 81.006 358 65 1 1 358 16 370 0.0 582
MS.gene050562.t1 MTR_1g080250 81.006 358 65 1 1 358 1 355 0.0 582
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050562.t1 AT1G08630 73.639 349 92 0 1 349 1 349 0.0 551
MS.gene050562.t1 AT1G08630 73.639 349 92 0 1 349 1 349 0.0 551
MS.gene050562.t1 AT1G08630 73.639 349 92 0 1 349 1 349 0.0 551
MS.gene050562.t1 AT1G08630 73.639 349 92 0 1 349 1 349 0.0 551
MS.gene050562.t1 AT1G08630 73.639 349 92 0 1 349 1 349 0.0 551
MS.gene050562.t1 AT3G04520 74.419 344 88 0 4 347 8 351 0.0 536
MS.gene050562.t1 AT3G04520 74.419 344 88 0 4 347 8 351 0.0 536
MS.gene050562.t1 AT3G04520 74.419 344 87 1 4 347 8 350 0.0 531
MS.gene050562.t1 AT1G08630 71.633 349 85 1 1 349 1 335 0.0 523
MS.gene050562.t1 AT1G08630 73.636 330 87 0 20 349 1 330 0.0 521

Find 86 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACACTTTGTCGTGCTTTC+AGG 0.173516 7.3:-1916689 MS.gene050562:intron
CTACAAAATACTTACAATAT+TGG 0.205905 7.3:+1917066 None:intergenic
TCATTATTTCTAACTGTTCT+TGG 0.215838 7.3:+1919037 None:intergenic
GCACATCGCTATCTGATATT+TGG 0.274562 7.3:+1916713 None:intergenic
AACCACAAGGCTCATTTGTT+TGG 0.308683 7.3:-1918945 MS.gene050562:CDS
ATTGAAATTGAAGAGAATTC+AGG 0.311218 7.3:-1916948 MS.gene050562:CDS
GCCGGAGGACCAAATGAAAA+TGG 0.327784 7.3:-1916567 MS.gene050562:CDS
GGATAAACAAGCTCCCCTTT+TGG 0.339653 7.3:+1918968 None:intergenic
CATATTCATATTTATGAGAA+TGG 0.341156 7.3:-1919088 MS.gene050562:CDS
TCCAAGGACTTAGAAGAATA+TGG 0.358787 7.3:-1916906 MS.gene050562:CDS
GAAGAGATGGCAAAGATAAC+TGG 0.383719 7.3:-1919217 MS.gene050562:CDS
AGTGAACAAGCACAGATATA+AGG 0.384763 7.3:+1919152 None:intergenic
GGATTGAAGCTTCACATTGA+TGG 0.392047 7.3:-1918338 MS.gene050562:CDS
ATGTTGCAGCGTGCGGTTGC+CGG 0.393302 7.3:-1916585 MS.gene050562:intron
GCCATATTCTTCTAAGTCCT+TGG 0.397824 7.3:+1916905 None:intergenic
AGAGGGAGTGAAGTAATTCT+TGG 0.400194 7.3:-1919121 MS.gene050562:CDS
GTTTGCTTATCTAAAGGTAT+TGG 0.427009 7.3:-1917706 MS.gene050562:CDS
TCCTTGGATAGCTTTGCTGC+TGG 0.432710 7.3:+1916921 None:intergenic
CCAGTTGGATCTGTAATTGT+TGG 0.446162 7.3:-1917679 MS.gene050562:CDS
TTTGTCCCATCAGGCACTAT+GGG 0.452519 7.3:-1919178 MS.gene050562:CDS
GATTAGGTTTGCTTATCTAA+AGG 0.460763 7.3:-1917712 MS.gene050562:intron
ATTTGTTTGGAAAATTCTCA+TGG 0.463399 7.3:-1918932 MS.gene050562:CDS
GAGGTCGATGATGATGTTCT+TGG 0.472967 7.3:-1919268 MS.gene050562:CDS
GTTGAATATACAGAGAGAGT+TGG 0.482578 7.3:-1918380 MS.gene050562:CDS
ACAGTTAGAAATAATGAAGA+TGG 0.487457 7.3:-1919031 MS.gene050562:CDS
TAACTAGGACAGTGGATCTT+CGG 0.488854 7.3:-1919345 MS.gene050562:CDS
TGAAACAATGCGAGTTGCTA+TGG 0.491610 7.3:-1919299 MS.gene050562:CDS
TACCTTGGTTATAAAGCTGT+TGG 0.496036 7.3:+1917654 None:intergenic
TCTTCTAAGCGTAAACAAGA+AGG 0.503667 7.3:+1919238 None:intergenic
AATGGAGGCATTGCAACCCT+TGG 0.505718 7.3:-1919070 MS.gene050562:CDS
CTTGTTCACTGCGACATAAG+AGG 0.507878 7.3:-1919139 MS.gene050562:CDS
GGAGGCATTGCAACCCTTGG+AGG 0.509812 7.3:-1919067 MS.gene050562:CDS
CTGTCTCATTCCACCACCTA+AGG 0.510563 7.3:+1917517 None:intergenic
GGCATCCTTCTCATGCCAAT+CGG 0.513035 7.3:-1916885 MS.gene050562:CDS
CGCTATCTGATATTTGGTGG+TGG 0.515490 7.3:+1916719 None:intergenic
CATGGATATTGATTTGATTG+AGG 0.516490 7.3:-1919005 MS.gene050562:CDS
GCAACTCGCATTGTTTCAGT+TGG 0.519214 7.3:+1919304 None:intergenic
TTCTTGGATGTACACCTCCA+AGG 0.519508 7.3:+1919053 None:intergenic
CCAACAATTACAGATCCAAC+TGG 0.520070 7.3:+1917679 None:intergenic
CAAAATGGTAACTAGGACAG+TGG 0.520303 7.3:-1919353 None:intergenic
CTGCAATTAGAGATCCAAAA+GGG 0.526811 7.3:-1918982 MS.gene050562:CDS
CACTTGGTGTTCCTGTGGAT+AGG 0.527788 7.3:-1918181 MS.gene050562:CDS
AGAAGGCTCAGAAAGACCTT+AGG 0.529362 7.3:-1917533 MS.gene050562:CDS
CATCGCTATCTGATATTTGG+TGG 0.529995 7.3:+1916716 None:intergenic
CTTAGGTGGTGGAATGAGAC+AGG 0.531990 7.3:-1917516 MS.gene050562:CDS
TCAGGCACTTGGTGTTCCTG+TGG 0.542119 7.3:-1918186 MS.gene050562:intron
TTGCAGACAAAATGGTAACT+AGG 0.544552 7.3:-1919360 None:intergenic
TCTTGGATGTACACCTCCAA+GGG 0.546880 7.3:+1919054 None:intergenic
CTCAGAAAGACCTTAGGTGG+TGG 0.554851 7.3:-1917527 MS.gene050562:CDS
CTCAATCAAATCAATATCCA+TGG 0.555497 7.3:+1919006 None:intergenic
TGAAATCAAAGGACTGAGAG+TGG 0.556209 7.3:-1917107 MS.gene050562:CDS
AAAGGTATTGGTGCTCCAGT+TGG 0.559792 7.3:-1917694 MS.gene050562:CDS
AATATTGGTTTCCACAGAAG+AGG 0.561141 7.3:+1917081 None:intergenic
TTTACGCTTAGAAGAAGAGA+TGG 0.562019 7.3:-1919230 MS.gene050562:CDS
GGTTCCCCATAGTGCCTGAT+GGG 0.562284 7.3:+1919173 None:intergenic
TTGCAGCGTGCGGTTGCCGG+AGG 0.565456 7.3:-1916582 MS.gene050562:intron
GATGGATTGAATGAAATCAA+AGG 0.567749 7.3:-1917118 MS.gene050562:CDS
ATATACAGAGAGAGTTGGAG+AGG 0.569205 7.3:-1918375 MS.gene050562:CDS
AACTGAAAGGCATCTACCAC+CGG 0.571112 7.3:+1918400 None:intergenic
AGGTTCCCCATAGTGCCTGA+TGG 0.574535 7.3:+1919172 None:intergenic
TCATGCCAATCGGATCATCA+AGG 0.575646 7.3:-1916875 MS.gene050562:intron
AAACAAATGAGCCTTGTGGT+TGG 0.579817 7.3:+1918947 None:intergenic
GGTGGTGGAATGAGACAGGT+TGG 0.583127 7.3:-1917512 MS.gene050562:CDS
AGCGTAAACAAGAAGGGTCG+CGG 0.584966 7.3:+1919245 None:intergenic
TTCCAACAGCTTTATAACCA+AGG 0.590972 7.3:-1917656 MS.gene050562:intron
GCTGCAATTAGAGATCCAAA+AGG 0.591600 7.3:-1918983 MS.gene050562:CDS
CTTCTAAGCGTAAACAAGAA+GGG 0.596464 7.3:+1919239 None:intergenic
GGAGAGGTTGCTAAGAAGCA+CGG 0.596469 7.3:-1918359 MS.gene050562:CDS
CAAGACCTTGATGATCCGAT+TGG 0.596889 7.3:+1916870 None:intergenic
ATTCATATTTATGAGAATGG+AGG 0.597452 7.3:-1919085 MS.gene050562:CDS
TTCCAAACAAATGAGCCTTG+TGG 0.608620 7.3:+1918943 None:intergenic
TTGTTCACTGCGACATAAGA+GGG 0.608669 7.3:-1919138 MS.gene050562:CDS
TGTGGATAGGCTTGTTCGAG+CGG 0.608773 7.3:-1918168 MS.gene050562:CDS
TCCAGCAGCAAAGCTATCCA+AGG 0.609285 7.3:-1916922 MS.gene050562:CDS
AGGCTCAGAAAGACCTTAGG+TGG 0.612425 7.3:-1917530 MS.gene050562:CDS
TTTCCTGAATGCAGCACCGG+TGG 0.617194 7.3:-1918416 MS.gene050562:intron
GAGAGTGGATACCTCTTCTG+TGG 0.618793 7.3:-1917092 MS.gene050562:CDS
GCTCGAACAAGCCTATCCAC+AGG 0.622305 7.3:+1918170 None:intergenic
TCTCTGTATATTCAACTGAA+AGG 0.625952 7.3:+1918387 None:intergenic
ATGATCCGATTGGCATGAGA+AGG 0.633762 7.3:+1916880 None:intergenic
AAATAATGAAGATGGAACCA+TGG 0.634516 7.3:-1919023 MS.gene050562:CDS
CAACAAGTGCAGCTGCACAA+AGG 0.642170 7.3:+1917486 None:intergenic
TTGTCCCATCAGGCACTATG+GGG 0.644998 7.3:-1919177 MS.gene050562:CDS
AGCTTGTTTATCCAACCACA+AGG 0.653076 7.3:-1918958 MS.gene050562:CDS
AGTTGCTATGGCAAACGCTG+AGG 0.668418 7.3:-1919287 MS.gene050562:CDS
TGCAATTAGAGATCCAAAAG+GGG 0.670578 7.3:-1918981 MS.gene050562:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAACTTTACATTATTAAAA+AGG + chr7.3:1917409-1917428 None:intergenic 10.0%
!! CTTTGAATATATATATGATT+AGG - chr7.3:1918181-1918200 MS.gene050562:CDS 15.0%
!! GAGTAAATTACTTTAATAAA+AGG + chr7.3:1919107-1919126 None:intergenic 15.0%
!!! ACTAATTCATTTTATAACTA+AGG - chr7.3:1917353-1917372 MS.gene050562:intron 15.0%
!!! TATATTTCTTTTCTTTTTCT+TGG - chr7.3:1919271-1919290 MS.gene050562:CDS 15.0%
!! AGTTAGAGGAAAAAATTTAA+AGG + chr7.3:1918762-1918781 None:intergenic 20.0%
!! ATGTCAATACTTATTCTTAT+TGG - chr7.3:1918023-1918042 MS.gene050562:intron 20.0%
!! ATTACCAAATTCAAATCAAA+AGG - chr7.3:1918129-1918148 MS.gene050562:intron 20.0%
!! CATATTCATATTTATGAGAA+TGG - chr7.3:1916821-1916840 MS.gene050562:intron 20.0%
!! CTACAAAATACTTACAATAT+TGG + chr7.3:1918846-1918865 None:intergenic 20.0%
!! CTTCAATTTCAATATATATC+TGG + chr7.3:1918954-1918973 None:intergenic 20.0%
!! GTTAGAGGAAAAAATTTAAA+GGG + chr7.3:1918761-1918780 None:intergenic 20.0%
!! TGTGTAGAAAATGTAAATAA+TGG + chr7.3:1917245-1917264 None:intergenic 20.0%
!!! ATAACCTTTTGATTTGAATT+TGG + chr7.3:1918136-1918155 None:intergenic 20.0%
!!! ATTATTATCAGTTTTGTGTT+TGG + chr7.3:1918557-1918576 None:intergenic 20.0%
!!! GTATGTATATATGCTATTTT+AGG - chr7.3:1918351-1918370 MS.gene050562:CDS 20.0%
!!! TTTTTGTGTCTTTATTTGAT+AGG + chr7.3:1918530-1918549 None:intergenic 20.0%
! AAAGTTAAGAATTCCTTCAA+TGG - chr7.3:1917421-1917440 MS.gene050562:intron 25.0%
! ACAGTTAGAAATAATGAAGA+TGG - chr7.3:1916878-1916897 MS.gene050562:CDS 25.0%
! ACTAGTATGAATGAAATGAA+TGG + chr7.3:1918872-1918891 None:intergenic 25.0%
! ATAATATAGACAACCATTGA+AGG + chr7.3:1917437-1917456 None:intergenic 25.0%
! ATATCGCTGAAATAATAGAA+AGG - chr7.3:1917080-1917099 MS.gene050562:intron 25.0%
! ATGTTCCATAGTTAGAAAAA+AGG - chr7.3:1917845-1917864 MS.gene050562:intron 25.0%
! ATTCATATTTATGAGAATGG+AGG - chr7.3:1916824-1916843 MS.gene050562:intron 25.0%
! ATTGAAATTGAAGAGAATTC+AGG - chr7.3:1918961-1918980 MS.gene050562:CDS 25.0%
! ATTTCATTCAATCCATCTAA+AGG + chr7.3:1918788-1918807 None:intergenic 25.0%
! ATTTGTTTGGAAAATTCTCA+TGG - chr7.3:1916977-1916996 MS.gene050562:intron 25.0%
! GAAATATATACAGCAAAACA+AGG + chr7.3:1919259-1919278 None:intergenic 25.0%
! GTTTATATATACATGATAGC+AGG + chr7.3:1917677-1917696 None:intergenic 25.0%
! TATTCAAAGTAATCACAAGT+TGG + chr7.3:1918170-1918189 None:intergenic 25.0%
! TCATTTATAACCACATTTGT+TGG - chr7.3:1918597-1918616 MS.gene050562:intron 25.0%
!! TCTTTTACCTTCTCTTTTAT+TGG - chr7.3:1917788-1917807 MS.gene050562:intron 25.0%
!!! AACATCCTTTTTTCTAACTA+TGG + chr7.3:1917853-1917872 None:intergenic 25.0%
!!! ACAGAAAATTTTGGTTTTTC+AGG - chr7.3:1917705-1917724 MS.gene050562:CDS 25.0%
!!! ATAACGATTTTGAAATACCT+TGG + chr7.3:1918273-1918292 None:intergenic 25.0%
!!! TAGTAATGTTTTGTTGGATA+CGG - chr7.3:1917033-1917052 MS.gene050562:intron 25.0%
!!! TCATTATTTCTAACTGTTCT+TGG + chr7.3:1916875-1916894 None:intergenic 25.0%
AAATAATGAAGATGGAACCA+TGG - chr7.3:1916886-1916905 MS.gene050562:CDS 30.0%
AAGTACAGTAAAAACATGCT+AGG + chr7.3:1917222-1917241 None:intergenic 30.0%
ATCATGTCCAATAAAAGAGA+AGG + chr7.3:1917798-1917817 None:intergenic 30.0%
CAACATTGTAAAGAACATAC+CGG + chr7.3:1918506-1918525 None:intergenic 30.0%
CAACATTTAGTATAGTGTCA+TGG - chr7.3:1918078-1918097 MS.gene050562:intron 30.0%
CATGACACTATACTAAATGT+TGG + chr7.3:1918080-1918099 None:intergenic 30.0%
CTCAATCAAATCAATATCCA+TGG + chr7.3:1916906-1916925 None:intergenic 30.0%
GCTCATAGTTTACTGATAAA+TGG - chr7.3:1917055-1917074 MS.gene050562:intron 30.0%
GGTGTTAAGTAGATGTTAAT+TGG - chr7.3:1918682-1918701 MS.gene050562:intron 30.0%
TCTCTGTATATTCAACTGAA+AGG + chr7.3:1917525-1917544 None:intergenic 30.0%
TCTTATCGTATCAGTTTCAT+TGG - chr7.3:1919134-1919153 MS.gene050562:CDS 30.0%
TGAAATTGTGATATACTTGC+TGG - chr7.3:1917898-1917917 MS.gene050562:intron 30.0%
! CAACTCATGACAGAAAATTT+TGG - chr7.3:1917696-1917715 MS.gene050562:CDS 30.0%
! CTTTTATTGGACATGATTCT+TGG - chr7.3:1917801-1917820 MS.gene050562:intron 30.0%
! GATTAGGTTTGCTTATCTAA+AGG - chr7.3:1918197-1918216 MS.gene050562:intron 30.0%
! GTTTGCTTATCTAAAGGTAT+TGG - chr7.3:1918203-1918222 MS.gene050562:intron 30.0%
! TCACAAGAATGCTAGATTTT+TGG - chr7.3:1918480-1918499 MS.gene050562:intron 30.0%
! TCACTCTAGTAATGTTTTGT+TGG - chr7.3:1917027-1917046 MS.gene050562:intron 30.0%
! TTTTATAGCCCTTCATTCAA+AGG + chr7.3:1917295-1917314 None:intergenic 30.0%
!! CATGGATATTGATTTGATTG+AGG - chr7.3:1916904-1916923 MS.gene050562:CDS 30.0%
!! GATGGATTGAATGAAATCAA+AGG - chr7.3:1918791-1918810 MS.gene050562:intron 30.0%
!!! ATATGCTATTTTAGGCTAGA+AGG - chr7.3:1918359-1918378 MS.gene050562:CDS 30.0%
ACAACAAACACCAACAAATG+TGG + chr7.3:1918610-1918629 None:intergenic 35.0%
AGTGAACAAGCACAGATATA+AGG + chr7.3:1916760-1916779 None:intergenic 35.0%
CTGCAATTAGAGATCCAAAA+GGG - chr7.3:1916927-1916946 MS.gene050562:CDS 35.0%
CTTCTAAGCGTAAACAAGAA+GGG + chr7.3:1916673-1916692 None:intergenic 35.0%
GTTGAATATACAGAGAGAGT+TGG - chr7.3:1917529-1917548 MS.gene050562:CDS 35.0%
TACCTTGGTTATAAAGCTGT+TGG + chr7.3:1918258-1918277 None:intergenic 35.0%
TCCAAGGACTTAGAAGAATA+TGG - chr7.3:1919003-1919022 MS.gene050562:CDS 35.0%
TCTTCTAAGCGTAAACAAGA+AGG + chr7.3:1916674-1916693 None:intergenic 35.0%
TGCAATTAGAGATCCAAAAG+GGG - chr7.3:1916928-1916947 MS.gene050562:CDS 35.0%
TTCTAACCAAGAAACATCTC+AGG + chr7.3:1917927-1917946 None:intergenic 35.0%
TTTACGCTTAGAAGAAGAGA+TGG - chr7.3:1916679-1916698 MS.gene050562:intron 35.0%
! GTCATGGCAATGACAATTTT+AGG - chr7.3:1918094-1918113 MS.gene050562:intron 35.0%
! TTCCAACAGCTTTATAACCA+AGG - chr7.3:1918253-1918272 MS.gene050562:intron 35.0%
! TTCTTCAACCTTGAAGTACT+CGG - chr7.3:1917952-1917971 MS.gene050562:intron 35.0%
!! AATATTGGTTTCCACAGAAG+AGG + chr7.3:1918831-1918850 None:intergenic 35.0%
!! CAGCTTTGAGTTCTTTAATC+TGG - chr7.3:1917649-1917668 MS.gene050562:intron 35.0%
!! TTGTTGGTGTTTGTTGTTCT+CGG - chr7.3:1918613-1918632 MS.gene050562:intron 35.0%
!!! AAGAATGCTAGATTTTTGGC+CGG - chr7.3:1918484-1918503 MS.gene050562:intron 35.0%
!!! ATTTTGGTTTTTCAGGCACT+TGG - chr7.3:1917712-1917731 MS.gene050562:intron 35.0%
AACCACAAGGCTCATTTGTT+TGG - chr7.3:1916964-1916983 MS.gene050562:intron 40.0%
AGAGGGAGTGAAGTAATTCT+TGG - chr7.3:1916788-1916807 MS.gene050562:intron 40.0%
ATACACTTTGTCGTGCTTTC+AGG - chr7.3:1919220-1919239 MS.gene050562:CDS 40.0%
ATATACAGAGAGAGTTGGAG+AGG - chr7.3:1917534-1917553 MS.gene050562:CDS 40.0%
CATCGCTATCTGATATTTGG+TGG + chr7.3:1919196-1919215 None:intergenic 40.0%
CCAACAATTACAGATCCAAC+TGG + chr7.3:1918233-1918252 None:intergenic 40.0%
CCAGTTGGATCTGTAATTGT+TGG - chr7.3:1918230-1918249 MS.gene050562:intron 40.0%
CCATCTAAAGGACAAGTTAG+AGG + chr7.3:1918776-1918795 None:intergenic 40.0%
CGATATTTGTTCACGGAGTT+CGG + chr7.3:1917147-1917166 None:intergenic 40.0%
GAAGAGATGGCAAAGATAAC+TGG - chr7.3:1916692-1916711 MS.gene050562:CDS 40.0%
GAGCACACGATATTTGTTCA+CGG + chr7.3:1917154-1917173 None:intergenic 40.0%
GCACATCGCTATCTGATATT+TGG + chr7.3:1919199-1919218 None:intergenic 40.0%
GCCATATTCTTCTAAGTCCT+TGG + chr7.3:1919007-1919026 None:intergenic 40.0%
GCTGCAATTAGAGATCCAAA+AGG - chr7.3:1916926-1916945 MS.gene050562:CDS 40.0%
GGATTGAAGCTTCACATTGA+TGG - chr7.3:1917571-1917590 MS.gene050562:intron 40.0%
TAACTAGGACAGTGGATCTT+CGG - chr7.3:1916564-1916583 MS.gene050562:CDS 40.0%
TGAAACAATGCGAGTTGCTA+TGG - chr7.3:1916610-1916629 MS.gene050562:intron 40.0%
TGAAATCAAAGGACTGAGAG+TGG - chr7.3:1918802-1918821 MS.gene050562:intron 40.0%
TGGTTTCCTGAGATGTTTCT+TGG - chr7.3:1917918-1917937 MS.gene050562:intron 40.0%
TTATTGAATGTTGCAGCGTG+CGG - chr7.3:1919317-1919336 MS.gene050562:CDS 40.0%
TTCCAAACAAATGAGCCTTG+TGG + chr7.3:1916969-1916988 None:intergenic 40.0%
TTGTTCACTGCGACATAAGA+GGG - chr7.3:1916771-1916790 MS.gene050562:intron 40.0%
! AAACAAATGAGCCTTGTGGT+TGG + chr7.3:1916965-1916984 None:intergenic 40.0%
! AGCTTGTTTATCCAACCACA+AGG - chr7.3:1916951-1916970 MS.gene050562:CDS 40.0%
! CCTCTAACTTGTCCTTTAGA+TGG - chr7.3:1918773-1918792 MS.gene050562:intron 40.0%
! CTTCAAACAGACTAGCTAGT+AGG + chr7.3:1918720-1918739 None:intergenic 40.0%
! TCCATTTTCATTTGGTCCTC+CGG + chr7.3:1919346-1919365 None:intergenic 40.0%
AACGGACACCCTTCAATATC+AGG - chr7.3:1918655-1918674 MS.gene050562:intron 45.0%
ACGGACACCCTTCAATATCA+GGG - chr7.3:1918656-1918675 MS.gene050562:intron 45.0%
ACTCTGCTGCCTTTGAATGA+AGG - chr7.3:1917283-1917302 MS.gene050562:intron 45.0%
AGAAGGCTCAGAAAGACCTT+AGG - chr7.3:1918376-1918395 MS.gene050562:CDS 45.0%
ATGATCCGATTGGCATGAGA+AGG + chr7.3:1919032-1919051 None:intergenic 45.0%
CACTGACACATGTTGGACAA+CGG - chr7.3:1918637-1918656 MS.gene050562:intron 45.0%
CTCTGCTGCCTTTGAATGAA+GGG - chr7.3:1917284-1917303 MS.gene050562:intron 45.0%
CTTGTTCACTGCGACATAAG+AGG - chr7.3:1916770-1916789 MS.gene050562:intron 45.0%
GCAACTCGCATTGTTTCAGT+TGG + chr7.3:1916608-1916627 None:intergenic 45.0%
TACTGCAACTACTCTGCAGT+CGG - chr7.3:1917103-1917122 MS.gene050562:CDS 45.0%
TCATGCCAATCGGATCATCA+AGG - chr7.3:1919034-1919053 MS.gene050562:CDS 45.0%
TCTTGGATGTACACCTCCAA+GGG + chr7.3:1916858-1916877 None:intergenic 45.0%
TTCTTGGATGTACACCTCCA+AGG + chr7.3:1916859-1916878 None:intergenic 45.0%
TTGTTTCCTGAATGCAGCAC+CGG - chr7.3:1917490-1917509 MS.gene050562:CDS 45.0%
TTTGTCCCATCAGGCACTAT+GGG - chr7.3:1916731-1916750 MS.gene050562:CDS 45.0%
! CAAGACCTTGATGATCCGAT+TGG + chr7.3:1919042-1919061 None:intergenic 45.0%
! CGCTATCTGATATTTGGTGG+TGG + chr7.3:1919193-1919212 None:intergenic 45.0%
! GAGGTCGATGATGATGTTCT+TGG - chr7.3:1916641-1916660 MS.gene050562:intron 45.0%
! GGATAAACAAGCTCCCCTTT+TGG + chr7.3:1916944-1916963 None:intergenic 45.0%
! TCGTGCTTTCAGGTGATGAT+CGG - chr7.3:1919230-1919249 MS.gene050562:CDS 45.0%
! TTTTGTCCCATCAGGCACTA+TGG - chr7.3:1916730-1916749 MS.gene050562:CDS 45.0%
!! AAAGGTATTGGTGCTCCAGT+TGG - chr7.3:1918215-1918234 MS.gene050562:intron 45.0%
!! AACTGAAAGGCATCTACCAC+CGG + chr7.3:1917512-1917531 None:intergenic 45.0%
ACACCGACCCCTGATATTGA+AGG + chr7.3:1918667-1918686 None:intergenic 50.0%
AGCGTAAACAAGAAGGGTCG+CGG + chr7.3:1916667-1916686 None:intergenic 50.0%
AGGCTCAGAAAGACCTTAGG+TGG - chr7.3:1918379-1918398 MS.gene050562:CDS 50.0%
AGTTGCTATGGCAAACGCTG+AGG - chr7.3:1916622-1916641 MS.gene050562:intron 50.0%
CAACAAGTGCAGCTGCACAA+AGG + chr7.3:1918426-1918445 None:intergenic 50.0%
CACCCTTCAATATCAGGGGT+CGG - chr7.3:1918661-1918680 MS.gene050562:intron 50.0%
CACCGACCCCTGATATTGAA+GGG + chr7.3:1918666-1918685 None:intergenic 50.0%
CGGACACCCTTCAATATCAG+GGG - chr7.3:1918657-1918676 MS.gene050562:intron 50.0%
CTCAGAAAGACCTTAGGTGG+TGG - chr7.3:1918382-1918401 MS.gene050562:CDS 50.0%
CTGTCTCATTCCACCACCTA+AGG + chr7.3:1918395-1918414 None:intergenic 50.0%
GAGAGTGGATACCTCTTCTG+TGG - chr7.3:1918817-1918836 MS.gene050562:intron 50.0%
GCCGGAGGACCAAATGAAAA+TGG - chr7.3:1919342-1919361 MS.gene050562:CDS 50.0%
GCTTCGAACCGAGTACTTCA+AGG + chr7.3:1917963-1917982 None:intergenic 50.0%
GGAGAGGTTGCTAAGAAGCA+CGG - chr7.3:1917550-1917569 MS.gene050562:intron 50.0%
GGCATCCTTCTCATGCCAAT+CGG - chr7.3:1919024-1919043 MS.gene050562:CDS 50.0%
GTCGGAGATGTAGGCAGAAT+TGG - chr7.3:1917121-1917140 MS.gene050562:intron 50.0%
TACTCTGCAGTCGGAGATGT+AGG - chr7.3:1917112-1917131 MS.gene050562:CDS 50.0%
TCCAGCAGCAAAGCTATCCA+AGG - chr7.3:1918987-1919006 MS.gene050562:CDS 50.0%
TCTCGGACACTGACACATGT+TGG - chr7.3:1918630-1918649 MS.gene050562:intron 50.0%
TTGTCCCATCAGGCACTATG+GGG - chr7.3:1916732-1916751 MS.gene050562:CDS 50.0%
! GCTGCTCTTTTTGTCCCATC+AGG - chr7.3:1916722-1916741 MS.gene050562:CDS 50.0%
! TCCTTGGATAGCTTTGCTGC+TGG + chr7.3:1918991-1919010 None:intergenic 50.0%
! TGTGGATAGGCTTGTTCGAG+CGG - chr7.3:1917741-1917760 MS.gene050562:intron 50.0%
!! AATGGAGGCATTGCAACCCT+TGG - chr7.3:1916839-1916858 MS.gene050562:intron 50.0%
!! CACTTGGTGTTCCTGTGGAT+AGG - chr7.3:1917728-1917747 MS.gene050562:intron 50.0%
!! CTTAGGTGGTGGAATGAGAC+AGG - chr7.3:1918393-1918412 MS.gene050562:CDS 50.0%
AGGTTCCCCATAGTGCCTGA+TGG + chr7.3:1916740-1916759 None:intergenic 55.0%
GCTCGAACAAGCCTATCCAC+AGG + chr7.3:1917742-1917761 None:intergenic 55.0%
GGTTCCCCATAGTGCCTGAT+GGG + chr7.3:1916739-1916758 None:intergenic 55.0%
! TTTCCTGAATGCAGCACCGG+TGG - chr7.3:1917493-1917512 MS.gene050562:CDS 55.0%
!! GGTGGTGGAATGAGACAGGT+TGG - chr7.3:1918397-1918416 MS.gene050562:CDS 55.0%
!! TCAGGCACTTGGTGTTCCTG+TGG - chr7.3:1917723-1917742 MS.gene050562:intron 55.0%
ATGTTGCAGCGTGCGGTTGC+CGG - chr7.3:1919324-1919343 MS.gene050562:CDS 60.0%
!! CTACCACCGGTGCTGCATTC+AGG + chr7.3:1917499-1917518 None:intergenic 60.0%
!! GGAGGCATTGCAACCCTTGG+AGG - chr7.3:1916842-1916861 MS.gene050562:intron 60.0%
TTGCAGCGTGCGGTTGCCGG+AGG - chr7.3:1919327-1919346 MS.gene050562:CDS 70.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 1916560 1919371 1916560 ID=MS.gene050562
chr7.3 mRNA 1916560 1919371 1916560 ID=MS.gene050562.t1;Parent=MS.gene050562
chr7.3 exon 1918929 1919371 1918929 ID=MS.gene050562.t1.exon1;Parent=MS.gene050562.t1
chr7.3 CDS 1918929 1919371 1918929 ID=cds.MS.gene050562.t1;Parent=MS.gene050562.t1
chr7.3 exon 1918313 1918424 1918313 ID=MS.gene050562.t1.exon2;Parent=MS.gene050562.t1
chr7.3 CDS 1918313 1918424 1918313 ID=cds.MS.gene050562.t1;Parent=MS.gene050562.t1
chr7.3 exon 1918154 1918204 1918154 ID=MS.gene050562.t1.exon3;Parent=MS.gene050562.t1
chr7.3 CDS 1918154 1918204 1918154 ID=cds.MS.gene050562.t1;Parent=MS.gene050562.t1
chr7.3 exon 1917657 1917728 1917657 ID=MS.gene050562.t1.exon4;Parent=MS.gene050562.t1
chr7.3 CDS 1917657 1917728 1917657 ID=cds.MS.gene050562.t1;Parent=MS.gene050562.t1
chr7.3 exon 1917426 1917558 1917426 ID=MS.gene050562.t1.exon5;Parent=MS.gene050562.t1
chr7.3 CDS 1917426 1917558 1917426 ID=cds.MS.gene050562.t1;Parent=MS.gene050562.t1
chr7.3 exon 1917081 1917139 1917081 ID=MS.gene050562.t1.exon6;Parent=MS.gene050562.t1
chr7.3 CDS 1917081 1917139 1917081 ID=cds.MS.gene050562.t1;Parent=MS.gene050562.t1
chr7.3 exon 1916876 1916976 1916876 ID=MS.gene050562.t1.exon7;Parent=MS.gene050562.t1
chr7.3 CDS 1916876 1916976 1916876 ID=cds.MS.gene050562.t1;Parent=MS.gene050562.t1
chr7.3 exon 1916690 1916756 1916690 ID=MS.gene050562.t1.exon8;Parent=MS.gene050562.t1
chr7.3 CDS 1916690 1916756 1916690 ID=cds.MS.gene050562.t1;Parent=MS.gene050562.t1
chr7.3 exon 1916560 1916598 1916560 ID=MS.gene050562.t1.exon9;Parent=MS.gene050562.t1
chr7.3 CDS 1916560 1916598 1916560 ID=cds.MS.gene050562.t1;Parent=MS.gene050562.t1
Gene Sequence

>MS.gene050562

ATGGTAACTAGGACAGTGGATCTTCGGTCAGATACAGTCACAAAACCAACTGAAACAATGCGAGTTGCTATGGCAAACGCTGAGGTCGATGATGATGTTCTTGGCCGCGACCCTTCTTGTTTACGCTTAGAAGAAGAGATGGCAAAGATAACTGGCAAAGAAGCTGCTCTTTTTGTCCCATCAGGCACTATGGGGAACCTTATATCTGTGCTTGTTCACTGCGACATAAGAGGGAGTGAAGTAATTCTTGGAGACAATTCACATATTCATATTTATGAGAATGGAGGCATTGCAACCCTTGGAGGTGTACATCCAAGAACAGTTAGAAATAATGAAGATGGAACCATGGATATTGATTTGATTGAGGCTGCAATTAGAGATCCAAAAGGGGAGCTTGTTTATCCAACCACAAGGCTCATTTGTTTGGAAAATTCTCATGGAAAGTAAGCATTTCTTTGATCAAAGTTTCACTCTAGTAATGTTTTGTTGGATACGGCTCATAGTTTACTGATAAATGGACATATCGCTGAAATAATAGAAAGGTACTGCAACTACTCTGCAGTCGGAGATGTAGGCAGAATTGGCCGAACTCCGTGAACAAATATCGTGTGCTCTTTGTATTTTCGTTTATCACATATGTTTTCTTTTGACTTTGCTGTCCTAGCATGTTTTTACTGTACTTCCATTATTTACATTTTCTACACAGCACATTGTTGCTTTTATACTCTGCTGCCTTTGAATGAAGGGCTATAAAATGATTTAGTTTATAAGATGATTCATAAACATTTTATAAACTAATTCATTTTATAACTAAGGTATATGTTGATTGTTCAAGCAAAAATGTTGCCTTTTTAATAATGTAAAGTTAAGAATTCCTTCAATGGTTGTCTATATTATATAATGCATTCACAGTATGAATGATTGAAACTTTTGTTTCCTGAATGCAGCACCGGTGGTAGATGCCTTTCAGTTGAATATACAGAGAGAGTTGGAGAGGTTGCTAAGAAGCACGGATTGAAGCTTCACATTGATGGAGCTCGTATATTTAATGCATCAGTTGTGAGTAACTTTTGTCATTTATAATAAACACAGCTTTGAGTTCTTTAATCTGGCTCCTGCTATCATGTATATATAAACAACTCATGACAGAAAATTTTGGTTTTTCAGGCACTTGGTGTTCCTGTGGATAGGCTTGTTCGAGCGGCTGATTCAGTGTCAGTATGTGTCTTCTTTTACCTTCTCTTTTATTGGACATGATTCTTGGAAAGACTCTTCTAGAGTAAATATGTTCCATAGTTAGAAAAAAGGATGTTTCTGTTCTTCGATTATATAACAGATTGAAATTGTGATATACTTGCTGGTTTCCTGAGATGTTTCTTGGTTAGAAGTTCATTCTTCAACCTTGAAGTACTCGGTTCGAAGCTAGCACAATTAATTTTTCGATATACTCAAGACTAAATTAAATGTCAATACTTATTCTTATTGGATCACTTTAGAAATAAACTCTAGAGTTTTTGCCAACATTTAGTATAGTGTCATGGCAATGACAATTTTAGGTATCTTAATGTAATTACCAAATTCAAATCAAAAGGTTATATATGAACTAACCAACTTGTGATTACTTTGAATATATATATGATTAGGTTTGCTTATCTAAAGGTATTGGTGCTCCAGTTGGATCTGTAATTGTTGGTTCCAACAGCTTTATAACCAAGGTATTTCAAAATCGTTATTGCGAGTACGATAAAAGTGATATCATTCTTTCTGAAAGAACTTGATATTATAACTTTTGTATGTATATATGCTATTTTAGGCTAGAAGGCTCAGAAAGACCTTAGGTGGTGGAATGAGACAGGTTGGCATCCTTTGTGCAGCTGCACTTGTTGCATTACATGAAAATGTTGAAAAGCTAGAAAGTGATCACAAGAATGCTAGATTTTTGGCCGGTATGTTCTTTACAATGTTGACCTATCAAATAAAGACACAAAAATGAACCAAACACAAAACTGATAATAATTTAATAAAATAGAAGTAAATTCATTTATAACCACATTTGTTGGTGTTTGTTGTTCTCGGACACTGACACATGTTGGACAACGGACACCCTTCAATATCAGGGGTCGGTGTTAAGTAGATGTTAATTGGTTCACAAGCAATCCTACTAGCTAGTCTGTTTGAAGAAGTACAATTTAAACACACCCTTTAAATTTTTTCCTCTAACTTGTCCTTTAGATGGATTGAATGAAATCAAAGGACTGAGAGTGGATACCTCTTCTGTGGAAACCAATATTGTAAGTATTTTGTAGAGTCCATTCATTTCATTCATACTAGTACAACAATTGCATTATTATTTCTCTGATTACTTTTGTGTTTAATCAATAATCTCTGATACCAGATATATATTGAAATTGAAGAGAATTCAGGAACTCCAGCAGCAAAGCTATCCAAGGACTTAGAAGAATATGGCATCCTTCTCATGCCAATCGGATCATCAAGGTCTTGTCTGTCACACTCTGCATTGTTACTAATAATATTATTGATTAACCTTTTATTAAAGTAATTTACTCATATGAATCTTATCGTATCAGTTTCATTGGTTCATTTTCTCTTGACAGATTGAGAGTTGTATTCCACCACCAAATATCAGATAGCGATGTGCGATACACTTTGTCGTGCTTTCAGGTGATGATCGGTCTCCTTGTTTTGCTGTATATATTTCTTTTCTTTTTCTTGGTATATATTTTATGTTTCATGATTTTATTGAATGTTGCAGCGTGCGGTTGCCGGAGGACCAAATGAAAATGGAAACTAG

Protein sequence

>MS.gene050562.t1

MVTRTVDLRSDTVTKPTETMRVAMANAEVDDDVLGRDPSCLRLEEEMAKITGKEAALFVPSGTMGNLISVLVHCDIRGSEVILGDNSHIHIYENGGIATLGGVHPRTVRNNEDGTMDIDLIEAAIRDPKGELVYPTTRLICLENSHGNTGGRCLSVEYTERVGEVAKKHGLKLHIDGARIFNASVALGVPVDRLVRAADSVSVCLSKGIGAPVGSVIVGSNSFITKARRLRKTLGGGMRQVGILCAAALVALHENVEKLESDHKNARFLADGLNEIKGLRVDTSSVETNIIYIEIEENSGTPAAKLSKDLEEYGILLMPIGSSRLRVVFHHQISDSDVRYTLSCFQRAVAGGPNENGN