AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050561


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050561.t1 MTR_7g115690 97.765 358 8 0 1 358 1 358 0.0 711
MS.gene050561.t1 MTR_1g080250 81.006 358 65 1 1 358 42 396 0.0 583
MS.gene050561.t1 MTR_1g080250 81.006 358 65 1 1 358 16 370 0.0 582
MS.gene050561.t1 MTR_1g080250 81.006 358 65 1 1 358 1 355 0.0 582
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050561.t1 AT1G08630 73.639 349 92 0 1 349 1 349 0.0 551
MS.gene050561.t1 AT1G08630 73.639 349 92 0 1 349 1 349 0.0 551
MS.gene050561.t1 AT1G08630 73.639 349 92 0 1 349 1 349 0.0 551
MS.gene050561.t1 AT1G08630 73.639 349 92 0 1 349 1 349 0.0 551
MS.gene050561.t1 AT1G08630 73.639 349 92 0 1 349 1 349 0.0 551
MS.gene050561.t1 AT3G04520 74.419 344 88 0 4 347 8 351 0.0 536
MS.gene050561.t1 AT3G04520 74.419 344 88 0 4 347 8 351 0.0 536
MS.gene050561.t1 AT3G04520 74.419 344 87 1 4 347 8 350 0.0 531
MS.gene050561.t1 AT1G08630 71.633 349 85 1 1 349 1 335 0.0 523
MS.gene050561.t1 AT1G08630 73.636 330 87 0 20 349 1 330 0.0 521

Find 86 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACACTTTGTCGTGCTTTC+AGG 0.173516 7.4:-2051682 MS.gene050561:intron
CTACAAAATACTTACAATAT+TGG 0.205905 7.4:+2052059 None:intergenic
TCATTATTTCTAACTGTTCT+TGG 0.215838 7.4:+2054030 None:intergenic
GCACATCGCTATCTGATATT+TGG 0.274562 7.4:+2051706 None:intergenic
AACCACAAGGCTCATTTGTT+TGG 0.308683 7.4:-2053938 MS.gene050561:CDS
ATTGAAATTGAAGAGAATTC+AGG 0.311218 7.4:-2051941 MS.gene050561:CDS
GCCGGAGGACCAAATGAAAA+TGG 0.327784 7.4:-2051560 MS.gene050561:CDS
GGATAAACAAGCTCCCCTTT+TGG 0.339653 7.4:+2053961 None:intergenic
CATATTCATATTTATGAGAA+TGG 0.341156 7.4:-2054081 MS.gene050561:CDS
TCCAAGGACTTAGAAGAATA+TGG 0.358787 7.4:-2051899 MS.gene050561:CDS
GAAGAGATGGCAAAGATAAC+TGG 0.383719 7.4:-2054210 MS.gene050561:CDS
AGTGAACAAGCACAGATATA+AGG 0.384763 7.4:+2054145 None:intergenic
GGATTGAAGCTTCACATTGA+TGG 0.392047 7.4:-2053331 MS.gene050561:CDS
ATGTTGCAGCGTGCGGTTGC+CGG 0.393302 7.4:-2051578 MS.gene050561:intron
GCCATATTCTTCTAAGTCCT+TGG 0.397824 7.4:+2051898 None:intergenic
AGAGGGAGTGAAGTAATTCT+TGG 0.400194 7.4:-2054114 MS.gene050561:CDS
GTTTGCTTATCTAAAGGTAT+TGG 0.427009 7.4:-2052699 MS.gene050561:CDS
TCCTTGGATAGCTTTGCTGC+TGG 0.432710 7.4:+2051914 None:intergenic
CCAGTTGGATCTGTAATTGT+TGG 0.446162 7.4:-2052672 MS.gene050561:CDS
TTTGTCCCATCAGGCACTAT+GGG 0.452519 7.4:-2054171 MS.gene050561:CDS
GATTAGGTTTGCTTATCTAA+AGG 0.460763 7.4:-2052705 MS.gene050561:intron
ATTTGTTTGGAAAATTCTCA+TGG 0.463399 7.4:-2053925 MS.gene050561:CDS
GAGGTCGATGATGATGTTCT+TGG 0.472967 7.4:-2054261 MS.gene050561:CDS
GTTGAATATACAGAGAGAGT+TGG 0.482578 7.4:-2053373 MS.gene050561:CDS
ACAGTTAGAAATAATGAAGA+TGG 0.487457 7.4:-2054024 MS.gene050561:CDS
TAACTAGGACAGTGGATCTT+CGG 0.488854 7.4:-2054338 MS.gene050561:CDS
TGAAACAATGCGAGTTGCTA+TGG 0.491610 7.4:-2054292 MS.gene050561:CDS
TACCTTGGTTATAAAGCTGT+TGG 0.496036 7.4:+2052647 None:intergenic
TCTTCTAAGCGTAAACAAGA+AGG 0.503667 7.4:+2054231 None:intergenic
AATGGAGGCATTGCAACCCT+TGG 0.505718 7.4:-2054063 MS.gene050561:CDS
CTTGTTCACTGCGACATAAG+AGG 0.507878 7.4:-2054132 MS.gene050561:CDS
GGAGGCATTGCAACCCTTGG+AGG 0.509812 7.4:-2054060 MS.gene050561:CDS
CTGTCTCATTCCACCACCTA+AGG 0.510563 7.4:+2052510 None:intergenic
GGCATCCTTCTCATGCCAAT+CGG 0.513035 7.4:-2051878 MS.gene050561:CDS
CGCTATCTGATATTTGGTGG+TGG 0.515490 7.4:+2051712 None:intergenic
CATGGATATTGATTTGATTG+AGG 0.516490 7.4:-2053998 MS.gene050561:CDS
GCAACTCGCATTGTTTCAGT+TGG 0.519214 7.4:+2054297 None:intergenic
TTCTTGGATGTACACCTCCA+AGG 0.519508 7.4:+2054046 None:intergenic
CCAACAATTACAGATCCAAC+TGG 0.520070 7.4:+2052672 None:intergenic
CAAAATGGTAACTAGGACAG+TGG 0.520303 7.4:-2054346 None:intergenic
CTGCAATTAGAGATCCAAAA+GGG 0.526811 7.4:-2053975 MS.gene050561:CDS
CACTTGGTGTTCCTGTGGAT+AGG 0.527788 7.4:-2053174 MS.gene050561:CDS
AGAAGGCTCAGAAAGACCTT+AGG 0.529362 7.4:-2052526 MS.gene050561:CDS
CATCGCTATCTGATATTTGG+TGG 0.529995 7.4:+2051709 None:intergenic
CTTAGGTGGTGGAATGAGAC+AGG 0.531990 7.4:-2052509 MS.gene050561:CDS
TCAGGCACTTGGTGTTCCTG+TGG 0.542119 7.4:-2053179 MS.gene050561:intron
TTGCAGACAAAATGGTAACT+AGG 0.544552 7.4:-2054353 None:intergenic
TCTTGGATGTACACCTCCAA+GGG 0.546880 7.4:+2054047 None:intergenic
CTCAGAAAGACCTTAGGTGG+TGG 0.554851 7.4:-2052520 MS.gene050561:CDS
CTCAATCAAATCAATATCCA+TGG 0.555497 7.4:+2053999 None:intergenic
TGAAATCAAAGGACTGAGAG+TGG 0.556209 7.4:-2052100 MS.gene050561:CDS
AAAGGTATTGGTGCTCCAGT+TGG 0.559792 7.4:-2052687 MS.gene050561:CDS
AATATTGGTTTCCACAGAAG+AGG 0.561141 7.4:+2052074 None:intergenic
TTTACGCTTAGAAGAAGAGA+TGG 0.562019 7.4:-2054223 MS.gene050561:CDS
GGTTCCCCATAGTGCCTGAT+GGG 0.562284 7.4:+2054166 None:intergenic
TTGCAGCGTGCGGTTGCCGG+AGG 0.565456 7.4:-2051575 MS.gene050561:intron
GATGGATTGAATGAAATCAA+AGG 0.567749 7.4:-2052111 MS.gene050561:CDS
ATATACAGAGAGAGTTGGAG+AGG 0.569205 7.4:-2053368 MS.gene050561:CDS
AACTGAAAGGCATCTACCAC+CGG 0.571112 7.4:+2053393 None:intergenic
AGGTTCCCCATAGTGCCTGA+TGG 0.574535 7.4:+2054165 None:intergenic
TCATGCCAATCGGATCATCA+AGG 0.575646 7.4:-2051868 MS.gene050561:intron
AAACAAATGAGCCTTGTGGT+TGG 0.579817 7.4:+2053940 None:intergenic
GGTGGTGGAATGAGACAGGT+TGG 0.583127 7.4:-2052505 MS.gene050561:CDS
AGCGTAAACAAGAAGGGTCG+CGG 0.584966 7.4:+2054238 None:intergenic
TTCCAACAGCTTTATAACCA+AGG 0.590972 7.4:-2052649 MS.gene050561:intron
GCTGCAATTAGAGATCCAAA+AGG 0.591600 7.4:-2053976 MS.gene050561:CDS
CTTCTAAGCGTAAACAAGAA+GGG 0.596464 7.4:+2054232 None:intergenic
GGAGAGGTTGCTAAGAAGCA+CGG 0.596469 7.4:-2053352 MS.gene050561:CDS
CAAGACCTTGATGATCCGAT+TGG 0.596889 7.4:+2051863 None:intergenic
ATTCATATTTATGAGAATGG+AGG 0.597452 7.4:-2054078 MS.gene050561:CDS
TTCCAAACAAATGAGCCTTG+TGG 0.608620 7.4:+2053936 None:intergenic
TTGTTCACTGCGACATAAGA+GGG 0.608669 7.4:-2054131 MS.gene050561:CDS
TGTGGATAGGCTTGTTCGAG+CGG 0.608773 7.4:-2053161 MS.gene050561:CDS
TCCAGCAGCAAAGCTATCCA+AGG 0.609285 7.4:-2051915 MS.gene050561:CDS
AGGCTCAGAAAGACCTTAGG+TGG 0.612425 7.4:-2052523 MS.gene050561:CDS
TTTCCTGAATGCAGCACCGG+TGG 0.617194 7.4:-2053409 MS.gene050561:intron
GAGAGTGGATACCTCTTCTG+TGG 0.618793 7.4:-2052085 MS.gene050561:CDS
GCTCGAACAAGCCTATCCAC+AGG 0.622305 7.4:+2053163 None:intergenic
TCTCTGTATATTCAACTGAA+AGG 0.625952 7.4:+2053380 None:intergenic
ATGATCCGATTGGCATGAGA+AGG 0.633762 7.4:+2051873 None:intergenic
AAATAATGAAGATGGAACCA+TGG 0.634516 7.4:-2054016 MS.gene050561:CDS
CAACAAGTGCAGCTGCACAA+AGG 0.642170 7.4:+2052479 None:intergenic
TTGTCCCATCAGGCACTATG+GGG 0.644998 7.4:-2054170 MS.gene050561:CDS
AGCTTGTTTATCCAACCACA+AGG 0.653076 7.4:-2053951 MS.gene050561:CDS
AGTTGCTATGGCAAACGCTG+AGG 0.668418 7.4:-2054280 MS.gene050561:CDS
TGCAATTAGAGATCCAAAAG+GGG 0.670578 7.4:-2053974 MS.gene050561:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAACTTTACATTATTAAAA+AGG + chr7.4:2052402-2052421 None:intergenic 10.0%
!! CTTTGAATATATATATGATT+AGG - chr7.4:2053174-2053193 MS.gene050561:CDS 15.0%
!! GAGTAAATTACTTTAATAAA+AGG + chr7.4:2054100-2054119 None:intergenic 15.0%
!!! ACTAATTCATTTTATAACTA+AGG - chr7.4:2052346-2052365 MS.gene050561:intron 15.0%
!!! TATATTTCTTTTCTTTTTCT+TGG - chr7.4:2054264-2054283 MS.gene050561:CDS 15.0%
!! AGTTAGAGGAAAAAATTTAA+AGG + chr7.4:2053755-2053774 None:intergenic 20.0%
!! ATGTCAATACTTATTCTTAT+TGG - chr7.4:2053016-2053035 MS.gene050561:intron 20.0%
!! ATTACCAAATTCAAATCAAA+AGG - chr7.4:2053122-2053141 MS.gene050561:intron 20.0%
!! CATATTCATATTTATGAGAA+TGG - chr7.4:2051814-2051833 MS.gene050561:intron 20.0%
!! CTACAAAATACTTACAATAT+TGG + chr7.4:2053839-2053858 None:intergenic 20.0%
!! CTTCAATTTCAATATATATC+TGG + chr7.4:2053947-2053966 None:intergenic 20.0%
!! GTTAGAGGAAAAAATTTAAA+GGG + chr7.4:2053754-2053773 None:intergenic 20.0%
!! TGTGTAGAAAATGTAAATAA+TGG + chr7.4:2052238-2052257 None:intergenic 20.0%
!!! ATAACCTTTTGATTTGAATT+TGG + chr7.4:2053129-2053148 None:intergenic 20.0%
!!! ATTATTATCAGTTTTGTGTT+TGG + chr7.4:2053550-2053569 None:intergenic 20.0%
!!! GTATGTATATATGCTATTTT+AGG - chr7.4:2053344-2053363 MS.gene050561:CDS 20.0%
!!! TTTTTGTGTCTTTATTTGAT+AGG + chr7.4:2053523-2053542 None:intergenic 20.0%
! AAAGTTAAGAATTCCTTCAA+TGG - chr7.4:2052414-2052433 MS.gene050561:intron 25.0%
! ACAGTTAGAAATAATGAAGA+TGG - chr7.4:2051871-2051890 MS.gene050561:CDS 25.0%
! ACTAGTATGAATGAAATGAA+TGG + chr7.4:2053865-2053884 None:intergenic 25.0%
! ATAATATAGACAACCATTGA+AGG + chr7.4:2052430-2052449 None:intergenic 25.0%
! ATATCGCTGAAATAATAGAA+AGG - chr7.4:2052073-2052092 MS.gene050561:intron 25.0%
! ATGTTCCATAGTTAGAAAAA+AGG - chr7.4:2052838-2052857 MS.gene050561:intron 25.0%
! ATTCATATTTATGAGAATGG+AGG - chr7.4:2051817-2051836 MS.gene050561:intron 25.0%
! ATTGAAATTGAAGAGAATTC+AGG - chr7.4:2053954-2053973 MS.gene050561:CDS 25.0%
! ATTTCATTCAATCCATCTAA+AGG + chr7.4:2053781-2053800 None:intergenic 25.0%
! ATTTGTTTGGAAAATTCTCA+TGG - chr7.4:2051970-2051989 MS.gene050561:intron 25.0%
! GAAATATATACAGCAAAACA+AGG + chr7.4:2054252-2054271 None:intergenic 25.0%
! GTTTATATATACATGATAGC+AGG + chr7.4:2052670-2052689 None:intergenic 25.0%
! TATTCAAAGTAATCACAAGT+TGG + chr7.4:2053163-2053182 None:intergenic 25.0%
! TCATTTATAACCACATTTGT+TGG - chr7.4:2053590-2053609 MS.gene050561:intron 25.0%
!! TCTTTTACCTTCTCTTTTAT+TGG - chr7.4:2052781-2052800 MS.gene050561:intron 25.0%
!!! AACATCCTTTTTTCTAACTA+TGG + chr7.4:2052846-2052865 None:intergenic 25.0%
!!! ACAGAAAATTTTGGTTTTTC+AGG - chr7.4:2052698-2052717 MS.gene050561:CDS 25.0%
!!! ATAACGATTTTGAAATACCT+TGG + chr7.4:2053266-2053285 None:intergenic 25.0%
!!! TAGTAATGTTTTGTTGGATA+CGG - chr7.4:2052026-2052045 MS.gene050561:intron 25.0%
!!! TCATTATTTCTAACTGTTCT+TGG + chr7.4:2051868-2051887 None:intergenic 25.0%
AAATAATGAAGATGGAACCA+TGG - chr7.4:2051879-2051898 MS.gene050561:CDS 30.0%
AAGTACAGTAAAAACATGCT+AGG + chr7.4:2052215-2052234 None:intergenic 30.0%
ATCATGTCCAATAAAAGAGA+AGG + chr7.4:2052791-2052810 None:intergenic 30.0%
CAACATTGTAAAGAACATAC+CGG + chr7.4:2053499-2053518 None:intergenic 30.0%
CAACATTTAGTATAGTGTCA+TGG - chr7.4:2053071-2053090 MS.gene050561:intron 30.0%
CATGACACTATACTAAATGT+TGG + chr7.4:2053073-2053092 None:intergenic 30.0%
CTCAATCAAATCAATATCCA+TGG + chr7.4:2051899-2051918 None:intergenic 30.0%
GCTCATAGTTTACTGATAAA+TGG - chr7.4:2052048-2052067 MS.gene050561:intron 30.0%
GGTGTTAAGTAGATGTTAAT+TGG - chr7.4:2053675-2053694 MS.gene050561:intron 30.0%
TCTCTGTATATTCAACTGAA+AGG + chr7.4:2052518-2052537 None:intergenic 30.0%
TCTTATCGTATCAGTTTCAT+TGG - chr7.4:2054127-2054146 MS.gene050561:CDS 30.0%
TGAAATTGTGATATACTTGC+TGG - chr7.4:2052891-2052910 MS.gene050561:intron 30.0%
! CAACTCATGACAGAAAATTT+TGG - chr7.4:2052689-2052708 MS.gene050561:CDS 30.0%
! CTTTTATTGGACATGATTCT+TGG - chr7.4:2052794-2052813 MS.gene050561:intron 30.0%
! GATTAGGTTTGCTTATCTAA+AGG - chr7.4:2053190-2053209 MS.gene050561:intron 30.0%
! GTTTGCTTATCTAAAGGTAT+TGG - chr7.4:2053196-2053215 MS.gene050561:intron 30.0%
! TCACAAGAATGCTAGATTTT+TGG - chr7.4:2053473-2053492 MS.gene050561:intron 30.0%
! TCACTCTAGTAATGTTTTGT+TGG - chr7.4:2052020-2052039 MS.gene050561:intron 30.0%
! TTTTATAGCCCTTCATTCAA+AGG + chr7.4:2052288-2052307 None:intergenic 30.0%
!! CATGGATATTGATTTGATTG+AGG - chr7.4:2051897-2051916 MS.gene050561:CDS 30.0%
!! GATGGATTGAATGAAATCAA+AGG - chr7.4:2053784-2053803 MS.gene050561:intron 30.0%
!!! ATATGCTATTTTAGGCTAGA+AGG - chr7.4:2053352-2053371 MS.gene050561:CDS 30.0%
ACAACAAACACCAACAAATG+TGG + chr7.4:2053603-2053622 None:intergenic 35.0%
AGTGAACAAGCACAGATATA+AGG + chr7.4:2051753-2051772 None:intergenic 35.0%
CTGCAATTAGAGATCCAAAA+GGG - chr7.4:2051920-2051939 MS.gene050561:CDS 35.0%
CTTCTAAGCGTAAACAAGAA+GGG + chr7.4:2051666-2051685 None:intergenic 35.0%
GTTGAATATACAGAGAGAGT+TGG - chr7.4:2052522-2052541 MS.gene050561:CDS 35.0%
TACCTTGGTTATAAAGCTGT+TGG + chr7.4:2053251-2053270 None:intergenic 35.0%
TCCAAGGACTTAGAAGAATA+TGG - chr7.4:2053996-2054015 MS.gene050561:CDS 35.0%
TCTTCTAAGCGTAAACAAGA+AGG + chr7.4:2051667-2051686 None:intergenic 35.0%
TGCAATTAGAGATCCAAAAG+GGG - chr7.4:2051921-2051940 MS.gene050561:CDS 35.0%
TTCTAACCAAGAAACATCTC+AGG + chr7.4:2052920-2052939 None:intergenic 35.0%
TTTACGCTTAGAAGAAGAGA+TGG - chr7.4:2051672-2051691 MS.gene050561:intron 35.0%
! GTCATGGCAATGACAATTTT+AGG - chr7.4:2053087-2053106 MS.gene050561:intron 35.0%
! TTCCAACAGCTTTATAACCA+AGG - chr7.4:2053246-2053265 MS.gene050561:intron 35.0%
! TTCTTCAACCTTGAAGTACT+CGG - chr7.4:2052945-2052964 MS.gene050561:intron 35.0%
!! AATATTGGTTTCCACAGAAG+AGG + chr7.4:2053824-2053843 None:intergenic 35.0%
!! CAGCTTTGAGTTCTTTAATC+TGG - chr7.4:2052642-2052661 MS.gene050561:intron 35.0%
!! TTGTTGGTGTTTGTTGTTCT+CGG - chr7.4:2053606-2053625 MS.gene050561:intron 35.0%
!!! AAGAATGCTAGATTTTTGGC+CGG - chr7.4:2053477-2053496 MS.gene050561:intron 35.0%
!!! ATTTTGGTTTTTCAGGCACT+TGG - chr7.4:2052705-2052724 MS.gene050561:intron 35.0%
AACCACAAGGCTCATTTGTT+TGG - chr7.4:2051957-2051976 MS.gene050561:intron 40.0%
AGAGGGAGTGAAGTAATTCT+TGG - chr7.4:2051781-2051800 MS.gene050561:intron 40.0%
ATACACTTTGTCGTGCTTTC+AGG - chr7.4:2054213-2054232 MS.gene050561:CDS 40.0%
ATATACAGAGAGAGTTGGAG+AGG - chr7.4:2052527-2052546 MS.gene050561:CDS 40.0%
CATCGCTATCTGATATTTGG+TGG + chr7.4:2054189-2054208 None:intergenic 40.0%
CCAACAATTACAGATCCAAC+TGG + chr7.4:2053226-2053245 None:intergenic 40.0%
CCAGTTGGATCTGTAATTGT+TGG - chr7.4:2053223-2053242 MS.gene050561:intron 40.0%
CCATCTAAAGGACAAGTTAG+AGG + chr7.4:2053769-2053788 None:intergenic 40.0%
CGATATTTGTTCACGGAGTT+CGG + chr7.4:2052140-2052159 None:intergenic 40.0%
GAAGAGATGGCAAAGATAAC+TGG - chr7.4:2051685-2051704 MS.gene050561:CDS 40.0%
GAGCACACGATATTTGTTCA+CGG + chr7.4:2052147-2052166 None:intergenic 40.0%
GCACATCGCTATCTGATATT+TGG + chr7.4:2054192-2054211 None:intergenic 40.0%
GCCATATTCTTCTAAGTCCT+TGG + chr7.4:2054000-2054019 None:intergenic 40.0%
GCTGCAATTAGAGATCCAAA+AGG - chr7.4:2051919-2051938 MS.gene050561:CDS 40.0%
GGATTGAAGCTTCACATTGA+TGG - chr7.4:2052564-2052583 MS.gene050561:intron 40.0%
TAACTAGGACAGTGGATCTT+CGG - chr7.4:2051557-2051576 MS.gene050561:CDS 40.0%
TGAAACAATGCGAGTTGCTA+TGG - chr7.4:2051603-2051622 MS.gene050561:intron 40.0%
TGAAATCAAAGGACTGAGAG+TGG - chr7.4:2053795-2053814 MS.gene050561:intron 40.0%
TGGTTTCCTGAGATGTTTCT+TGG - chr7.4:2052911-2052930 MS.gene050561:intron 40.0%
TTATTGAATGTTGCAGCGTG+CGG - chr7.4:2054310-2054329 MS.gene050561:CDS 40.0%
TTCCAAACAAATGAGCCTTG+TGG + chr7.4:2051962-2051981 None:intergenic 40.0%
TTGTTCACTGCGACATAAGA+GGG - chr7.4:2051764-2051783 MS.gene050561:intron 40.0%
! AAACAAATGAGCCTTGTGGT+TGG + chr7.4:2051958-2051977 None:intergenic 40.0%
! AGCTTGTTTATCCAACCACA+AGG - chr7.4:2051944-2051963 MS.gene050561:CDS 40.0%
! CCTCTAACTTGTCCTTTAGA+TGG - chr7.4:2053766-2053785 MS.gene050561:intron 40.0%
! CTTCAAACAGACTAGCTAGT+AGG + chr7.4:2053713-2053732 None:intergenic 40.0%
! TCCATTTTCATTTGGTCCTC+CGG + chr7.4:2054339-2054358 None:intergenic 40.0%
AACGGACACCCTTCAATATC+AGG - chr7.4:2053648-2053667 MS.gene050561:intron 45.0%
ACGGACACCCTTCAATATCA+GGG - chr7.4:2053649-2053668 MS.gene050561:intron 45.0%
ACTCTGCTGCCTTTGAATGA+AGG - chr7.4:2052276-2052295 MS.gene050561:intron 45.0%
AGAAGGCTCAGAAAGACCTT+AGG - chr7.4:2053369-2053388 MS.gene050561:CDS 45.0%
ATGATCCGATTGGCATGAGA+AGG + chr7.4:2054025-2054044 None:intergenic 45.0%
CACTGACACATGTTGGACAA+CGG - chr7.4:2053630-2053649 MS.gene050561:intron 45.0%
CTCTGCTGCCTTTGAATGAA+GGG - chr7.4:2052277-2052296 MS.gene050561:intron 45.0%
CTTGTTCACTGCGACATAAG+AGG - chr7.4:2051763-2051782 MS.gene050561:intron 45.0%
GCAACTCGCATTGTTTCAGT+TGG + chr7.4:2051601-2051620 None:intergenic 45.0%
TACTGCAACTACTCTGCAGT+CGG - chr7.4:2052096-2052115 MS.gene050561:CDS 45.0%
TCATGCCAATCGGATCATCA+AGG - chr7.4:2054027-2054046 MS.gene050561:CDS 45.0%
TCTTGGATGTACACCTCCAA+GGG + chr7.4:2051851-2051870 None:intergenic 45.0%
TTCTTGGATGTACACCTCCA+AGG + chr7.4:2051852-2051871 None:intergenic 45.0%
TTGTTTCCTGAATGCAGCAC+CGG - chr7.4:2052483-2052502 MS.gene050561:CDS 45.0%
TTTGTCCCATCAGGCACTAT+GGG - chr7.4:2051724-2051743 MS.gene050561:CDS 45.0%
! CAAGACCTTGATGATCCGAT+TGG + chr7.4:2054035-2054054 None:intergenic 45.0%
! CGCTATCTGATATTTGGTGG+TGG + chr7.4:2054186-2054205 None:intergenic 45.0%
! GAGGTCGATGATGATGTTCT+TGG - chr7.4:2051634-2051653 MS.gene050561:intron 45.0%
! GGATAAACAAGCTCCCCTTT+TGG + chr7.4:2051937-2051956 None:intergenic 45.0%
! TCGTGCTTTCAGGTGATGAT+CGG - chr7.4:2054223-2054242 MS.gene050561:CDS 45.0%
! TTTTGTCCCATCAGGCACTA+TGG - chr7.4:2051723-2051742 MS.gene050561:CDS 45.0%
!! AAAGGTATTGGTGCTCCAGT+TGG - chr7.4:2053208-2053227 MS.gene050561:intron 45.0%
!! AACTGAAAGGCATCTACCAC+CGG + chr7.4:2052505-2052524 None:intergenic 45.0%
ACACCGACCCCTGATATTGA+AGG + chr7.4:2053660-2053679 None:intergenic 50.0%
AGCGTAAACAAGAAGGGTCG+CGG + chr7.4:2051660-2051679 None:intergenic 50.0%
AGGCTCAGAAAGACCTTAGG+TGG - chr7.4:2053372-2053391 MS.gene050561:CDS 50.0%
AGTTGCTATGGCAAACGCTG+AGG - chr7.4:2051615-2051634 MS.gene050561:intron 50.0%
CAACAAGTGCAGCTGCACAA+AGG + chr7.4:2053419-2053438 None:intergenic 50.0%
CACCCTTCAATATCAGGGGT+CGG - chr7.4:2053654-2053673 MS.gene050561:intron 50.0%
CACCGACCCCTGATATTGAA+GGG + chr7.4:2053659-2053678 None:intergenic 50.0%
CGGACACCCTTCAATATCAG+GGG - chr7.4:2053650-2053669 MS.gene050561:intron 50.0%
CTCAGAAAGACCTTAGGTGG+TGG - chr7.4:2053375-2053394 MS.gene050561:CDS 50.0%
CTGTCTCATTCCACCACCTA+AGG + chr7.4:2053388-2053407 None:intergenic 50.0%
GAGAGTGGATACCTCTTCTG+TGG - chr7.4:2053810-2053829 MS.gene050561:intron 50.0%
GCCGGAGGACCAAATGAAAA+TGG - chr7.4:2054335-2054354 MS.gene050561:CDS 50.0%
GCTTCGAACCGAGTACTTCA+AGG + chr7.4:2052956-2052975 None:intergenic 50.0%
GGAGAGGTTGCTAAGAAGCA+CGG - chr7.4:2052543-2052562 MS.gene050561:intron 50.0%
GGCATCCTTCTCATGCCAAT+CGG - chr7.4:2054017-2054036 MS.gene050561:CDS 50.0%
GTCGGAGATGTAGGCAGAAT+TGG - chr7.4:2052114-2052133 MS.gene050561:intron 50.0%
TACTCTGCAGTCGGAGATGT+AGG - chr7.4:2052105-2052124 MS.gene050561:CDS 50.0%
TCCAGCAGCAAAGCTATCCA+AGG - chr7.4:2053980-2053999 MS.gene050561:CDS 50.0%
TCTCGGACACTGACACATGT+TGG - chr7.4:2053623-2053642 MS.gene050561:intron 50.0%
TTGTCCCATCAGGCACTATG+GGG - chr7.4:2051725-2051744 MS.gene050561:CDS 50.0%
! GCTGCTCTTTTTGTCCCATC+AGG - chr7.4:2051715-2051734 MS.gene050561:CDS 50.0%
! TCCTTGGATAGCTTTGCTGC+TGG + chr7.4:2053984-2054003 None:intergenic 50.0%
! TGTGGATAGGCTTGTTCGAG+CGG - chr7.4:2052734-2052753 MS.gene050561:intron 50.0%
!! AATGGAGGCATTGCAACCCT+TGG - chr7.4:2051832-2051851 MS.gene050561:intron 50.0%
!! CACTTGGTGTTCCTGTGGAT+AGG - chr7.4:2052721-2052740 MS.gene050561:intron 50.0%
!! CTTAGGTGGTGGAATGAGAC+AGG - chr7.4:2053386-2053405 MS.gene050561:CDS 50.0%
AGGTTCCCCATAGTGCCTGA+TGG + chr7.4:2051733-2051752 None:intergenic 55.0%
GCTCGAACAAGCCTATCCAC+AGG + chr7.4:2052735-2052754 None:intergenic 55.0%
GGTTCCCCATAGTGCCTGAT+GGG + chr7.4:2051732-2051751 None:intergenic 55.0%
! TTTCCTGAATGCAGCACCGG+TGG - chr7.4:2052486-2052505 MS.gene050561:CDS 55.0%
!! GGTGGTGGAATGAGACAGGT+TGG - chr7.4:2053390-2053409 MS.gene050561:CDS 55.0%
!! TCAGGCACTTGGTGTTCCTG+TGG - chr7.4:2052716-2052735 MS.gene050561:intron 55.0%
ATGTTGCAGCGTGCGGTTGC+CGG - chr7.4:2054317-2054336 MS.gene050561:CDS 60.0%
!! CTACCACCGGTGCTGCATTC+AGG + chr7.4:2052492-2052511 None:intergenic 60.0%
!! GGAGGCATTGCAACCCTTGG+AGG - chr7.4:2051835-2051854 MS.gene050561:intron 60.0%
TTGCAGCGTGCGGTTGCCGG+AGG - chr7.4:2054320-2054339 MS.gene050561:CDS 70.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 2051553 2054364 2051553 ID=MS.gene050561
chr7.4 mRNA 2051553 2054364 2051553 ID=MS.gene050561.t1;Parent=MS.gene050561
chr7.4 exon 2053922 2054364 2053922 ID=MS.gene050561.t1.exon1;Parent=MS.gene050561.t1
chr7.4 CDS 2053922 2054364 2053922 ID=cds.MS.gene050561.t1;Parent=MS.gene050561.t1
chr7.4 exon 2053306 2053417 2053306 ID=MS.gene050561.t1.exon2;Parent=MS.gene050561.t1
chr7.4 CDS 2053306 2053417 2053306 ID=cds.MS.gene050561.t1;Parent=MS.gene050561.t1
chr7.4 exon 2053147 2053197 2053147 ID=MS.gene050561.t1.exon3;Parent=MS.gene050561.t1
chr7.4 CDS 2053147 2053197 2053147 ID=cds.MS.gene050561.t1;Parent=MS.gene050561.t1
chr7.4 exon 2052650 2052721 2052650 ID=MS.gene050561.t1.exon4;Parent=MS.gene050561.t1
chr7.4 CDS 2052650 2052721 2052650 ID=cds.MS.gene050561.t1;Parent=MS.gene050561.t1
chr7.4 exon 2052419 2052551 2052419 ID=MS.gene050561.t1.exon5;Parent=MS.gene050561.t1
chr7.4 CDS 2052419 2052551 2052419 ID=cds.MS.gene050561.t1;Parent=MS.gene050561.t1
chr7.4 exon 2052074 2052132 2052074 ID=MS.gene050561.t1.exon6;Parent=MS.gene050561.t1
chr7.4 CDS 2052074 2052132 2052074 ID=cds.MS.gene050561.t1;Parent=MS.gene050561.t1
chr7.4 exon 2051869 2051969 2051869 ID=MS.gene050561.t1.exon7;Parent=MS.gene050561.t1
chr7.4 CDS 2051869 2051969 2051869 ID=cds.MS.gene050561.t1;Parent=MS.gene050561.t1
chr7.4 exon 2051683 2051749 2051683 ID=MS.gene050561.t1.exon8;Parent=MS.gene050561.t1
chr7.4 CDS 2051683 2051749 2051683 ID=cds.MS.gene050561.t1;Parent=MS.gene050561.t1
chr7.4 exon 2051553 2051591 2051553 ID=MS.gene050561.t1.exon9;Parent=MS.gene050561.t1
chr7.4 CDS 2051553 2051591 2051553 ID=cds.MS.gene050561.t1;Parent=MS.gene050561.t1
Gene Sequence

>MS.gene050561

ATGGTAACTAGGACAGTGGATCTTCGGTCAGATACAGTCACAAAACCAACTGAAACAATGCGAGTTGCTATGGCAAACGCTGAGGTCGATGATGATGTTCTTGGCCGCGACCCTTCTTGTTTACGCTTAGAAGAAGAGATGGCAAAGATAACTGGCAAAGAAGCTGCTCTTTTTGTCCCATCAGGCACTATGGGGAACCTTATATCTGTGCTTGTTCACTGCGACATAAGAGGGAGTGAAGTAATTCTTGGAGACAATTCACATATTCATATTTATGAGAATGGAGGCATTGCAACCCTTGGAGGTGTACATCCAAGAACAGTTAGAAATAATGAAGATGGAACCATGGATATTGATTTGATTGAGGCTGCAATTAGAGATCCAAAAGGGGAGCTTGTTTATCCAACCACAAGGCTCATTTGTTTGGAAAATTCTCATGGAAAGTAAGCATTTCTTTGATCAAAGTTTCACTCTAGTAATGTTTTGTTGGATACGGCTCATAGTTTACTGATAAATGGACATATCGCTGAAATAATAGAAAGGTACTGCAACTACTCTGCAGTCGGAGATGTAGGCAGAATTGGCCGAACTCCGTGAACAAATATCGTGTGCTCTTTGTATTTTCGTTTATCACATATGTTTTCTTTTGACTTTGCTGTCCTAGCATGTTTTTACTGTACTTCCATTATTTACATTTTCTACACAGCACATTGTTGCTTTTATACTCTGCTGCCTTTGAATGAAGGGCTATAAAATGATTTAGTTTATAAGATGATTCATAAACATTTTATAAACTAATTCATTTTATAACTAAGGTATATGTTGATTGTTCAAGCAAAAATGTTGCCTTTTTAATAATGTAAAGTTAAGAATTCCTTCAATGGTTGTCTATATTATATAATGCATTCACAGTATGAATGATTGAAACTTTTGTTTCCTGAATGCAGCACCGGTGGTAGATGCCTTTCAGTTGAATATACAGAGAGAGTTGGAGAGGTTGCTAAGAAGCACGGATTGAAGCTTCACATTGATGGAGCTCGTATATTTAATGCATCAGTTGTGAGTAACTTTTGTCATTTATAATAAACACAGCTTTGAGTTCTTTAATCTGGCTCCTGCTATCATGTATATATAAACAACTCATGACAGAAAATTTTGGTTTTTCAGGCACTTGGTGTTCCTGTGGATAGGCTTGTTCGAGCGGCTGATTCAGTGTCAGTATGTGTCTTCTTTTACCTTCTCTTTTATTGGACATGATTCTTGGAAAGACTCTTCTAGAGTAAATATGTTCCATAGTTAGAAAAAAGGATGTTTCTGTTCTTCGATTATATAACAGATTGAAATTGTGATATACTTGCTGGTTTCCTGAGATGTTTCTTGGTTAGAAGTTCATTCTTCAACCTTGAAGTACTCGGTTCGAAGCTAGCACAATTAATTTTTCGATATACTCAAGACTAAATTAAATGTCAATACTTATTCTTATTGGATCACTTTAGAAATAAACTCTAGAGTTTTTGCCAACATTTAGTATAGTGTCATGGCAATGACAATTTTAGGTATCTTAATGTAATTACCAAATTCAAATCAAAAGGTTATATATGAACTAACCAACTTGTGATTACTTTGAATATATATATGATTAGGTTTGCTTATCTAAAGGTATTGGTGCTCCAGTTGGATCTGTAATTGTTGGTTCCAACAGCTTTATAACCAAGGTATTTCAAAATCGTTATTGCGAGTACGATAAAAGTGATATCATTCTTTCTGAAAGAACTTGATATTATAACTTTTGTATGTATATATGCTATTTTAGGCTAGAAGGCTCAGAAAGACCTTAGGTGGTGGAATGAGACAGGTTGGCATCCTTTGTGCAGCTGCACTTGTTGCATTACATGAAAATGTTGAAAAGCTAGAAAGTGATCACAAGAATGCTAGATTTTTGGCCGGTATGTTCTTTACAATGTTGACCTATCAAATAAAGACACAAAAATGAACCAAACACAAAACTGATAATAATTTAATAAAATAGAAGTAAATTCATTTATAACCACATTTGTTGGTGTTTGTTGTTCTCGGACACTGACACATGTTGGACAACGGACACCCTTCAATATCAGGGGTCGGTGTTAAGTAGATGTTAATTGGTTCACAAGCAATCCTACTAGCTAGTCTGTTTGAAGAAGTACAATTTAAACACACCCTTTAAATTTTTTCCTCTAACTTGTCCTTTAGATGGATTGAATGAAATCAAAGGACTGAGAGTGGATACCTCTTCTGTGGAAACCAATATTGTAAGTATTTTGTAGAGTCCATTCATTTCATTCATACTAGTACAACAATTGCATTATTATTTCTCTGATTACTTTTGTGTTTAATCAATAATCTCTGATACCAGATATATATTGAAATTGAAGAGAATTCAGGAACTCCAGCAGCAAAGCTATCCAAGGACTTAGAAGAATATGGCATCCTTCTCATGCCAATCGGATCATCAAGGTCTTGTCTGTCACACTCTGCATTGTTACTAATAATATTATTGATTAACCTTTTATTAAAGTAATTTACTCATATGAATCTTATCGTATCAGTTTCATTGGTTCATTTTCTCTTGACAGATTGAGAGTTGTATTCCACCACCAAATATCAGATAGCGATGTGCGATACACTTTGTCGTGCTTTCAGGTGATGATCGGTCTCCTTGTTTTGCTGTATATATTTCTTTTCTTTTTCTTGGTATATATTTTATGTTTCATGATTTTATTGAATGTTGCAGCGTGCGGTTGCCGGAGGACCAAATGAAAATGGAAACTAG

Protein sequence

>MS.gene050561.t1

MVTRTVDLRSDTVTKPTETMRVAMANAEVDDDVLGRDPSCLRLEEEMAKITGKEAALFVPSGTMGNLISVLVHCDIRGSEVILGDNSHIHIYENGGIATLGGVHPRTVRNNEDGTMDIDLIEAAIRDPKGELVYPTTRLICLENSHGNTGGRCLSVEYTERVGEVAKKHGLKLHIDGARIFNASVALGVPVDRLVRAADSVSVCLSKGIGAPVGSVIVGSNSFITKARRLRKTLGGGMRQVGILCAAALVALHENVEKLESDHKNARFLADGLNEIKGLRVDTSSVETNIIYIEIEENSGTPAAKLSKDLEEYGILLMPIGSSRLRVVFHHQISDSDVRYTLSCFQRAVAGGPNENGN