Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44574.t1 | XP_024628783.1 | 44.1 | 263 | 97 | 2 | 1 | 213 | 58 | 320 | 6.30E-57 | 230.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44574.t1 | A0A392M0A7 | 40.9 | 279 | 99 | 1 | 1 | 213 | 58 | 336 | 1.5e-55 | 225.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049853 | MS.gene44574 | 0.825374 | 4.85E-54 | -1.69E-46 |
| MS.gene052447 | MS.gene44574 | 0.834884 | 2.31E-56 | -1.69E-46 |
| MS.gene055952 | MS.gene44574 | 0.853352 | 2.53E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44574.t1 | MTR_6g051890 | 49.296 | 213 | 85 | 1 | 1 | 213 | 62 | 251 | 7.53e-67 | 211 |
| MS.gene44574.t1 | MTR_4g046077 | 38.636 | 220 | 83 | 3 | 46 | 213 | 1 | 220 | 2.97e-43 | 150 |
| MS.gene44574.t1 | MTR_5g078250 | 64.078 | 103 | 37 | 0 | 1 | 103 | 58 | 160 | 1.03e-39 | 142 |
| MS.gene44574.t1 | MTR_5g078250 | 46.018 | 113 | 60 | 1 | 101 | 213 | 224 | 335 | 7.31e-29 | 112 |
| MS.gene44574.t1 | MTR_8g059025 | 76.543 | 81 | 19 | 0 | 1 | 81 | 58 | 138 | 3.64e-39 | 132 |
| MS.gene44574.t1 | MTR_1g075850 | 64.078 | 103 | 37 | 0 | 1 | 103 | 52 | 154 | 9.36e-39 | 140 |
| MS.gene44574.t1 | MTR_1g075850 | 45.946 | 111 | 59 | 1 | 103 | 213 | 220 | 329 | 4.62e-27 | 107 |
| MS.gene44574.t1 | MTR_8g062030 | 61.224 | 98 | 38 | 0 | 1 | 98 | 58 | 155 | 5.48e-36 | 133 |
| MS.gene44574.t1 | MTR_8g062030 | 48.673 | 113 | 58 | 0 | 101 | 213 | 224 | 336 | 3.03e-32 | 122 |
| MS.gene44574.t1 | MTR_0042s0170 | 44.509 | 173 | 85 | 3 | 46 | 213 | 1 | 167 | 1.63e-35 | 129 |
| MS.gene44574.t1 | MTR_8g467450 | 64.634 | 82 | 29 | 0 | 1 | 82 | 58 | 139 | 8.19e-29 | 105 |
| MS.gene44574.t1 | MTR_6g052340 | 53.211 | 109 | 45 | 2 | 3 | 105 | 56 | 164 | 2.08e-28 | 112 |
| MS.gene44574.t1 | MTR_3g081610 | 45.833 | 96 | 47 | 2 | 118 | 213 | 10 | 100 | 4.36e-24 | 95.5 |
| MS.gene44574.t1 | MTR_5g055160 | 29.825 | 171 | 107 | 2 | 1 | 160 | 58 | 226 | 1.67e-18 | 81.6 |
| MS.gene44574.t1 | MTR_3g095950 | 39.175 | 97 | 59 | 0 | 1 | 97 | 58 | 154 | 2.37e-18 | 79.3 |
| MS.gene44574.t1 | MTR_3g116750 | 39.175 | 97 | 59 | 0 | 1 | 97 | 58 | 154 | 2.42e-18 | 79.3 |
| MS.gene44574.t1 | MTR_2g062200 | 40.404 | 99 | 55 | 2 | 1 | 97 | 15 | 111 | 5.13e-18 | 78.6 |
| MS.gene44574.t1 | MTR_4g016120 | 39.175 | 97 | 59 | 0 | 1 | 97 | 49 | 145 | 6.22e-18 | 77.8 |
| MS.gene44574.t1 | MTR_8g461360 | 39.175 | 97 | 59 | 0 | 1 | 97 | 1 | 97 | 8.40e-18 | 79.0 |
| MS.gene44574.t1 | MTR_5g007120 | 29.651 | 172 | 109 | 2 | 1 | 160 | 27 | 198 | 1.83e-17 | 78.2 |
| MS.gene44574.t1 | MTR_5g056060 | 29.651 | 172 | 109 | 2 | 1 | 160 | 52 | 223 | 1.89e-17 | 78.6 |
| MS.gene44574.t1 | MTR_4g471610 | 38.144 | 97 | 60 | 0 | 1 | 97 | 58 | 154 | 2.58e-17 | 76.6 |
| MS.gene44574.t1 | MTR_3g078440 | 38.144 | 97 | 60 | 0 | 1 | 97 | 58 | 154 | 2.58e-17 | 76.6 |
| MS.gene44574.t1 | MTR_8g036090 | 38.144 | 97 | 60 | 0 | 1 | 97 | 58 | 154 | 2.58e-17 | 76.6 |
| MS.gene44574.t1 | MTR_7g104000 | 29.480 | 173 | 109 | 2 | 1 | 160 | 52 | 224 | 3.02e-17 | 77.8 |
| MS.gene44574.t1 | MTR_4g134870 | 41.111 | 90 | 53 | 0 | 118 | 207 | 117 | 206 | 3.03e-17 | 79.7 |
| MS.gene44574.t1 | MTR_7g093810 | 38.144 | 97 | 60 | 0 | 1 | 97 | 58 | 154 | 3.15e-17 | 76.3 |
| MS.gene44574.t1 | MTR_7g089660 | 38.144 | 97 | 60 | 0 | 1 | 97 | 58 | 154 | 3.86e-17 | 77.4 |
| MS.gene44574.t1 | MTR_1g036740 | 38.144 | 97 | 60 | 0 | 1 | 97 | 58 | 154 | 4.99e-17 | 75.9 |
| MS.gene44574.t1 | MTR_8g096680 | 38.144 | 97 | 60 | 0 | 1 | 97 | 58 | 154 | 4.99e-17 | 75.9 |
| MS.gene44574.t1 | MTR_4g028320 | 38.144 | 97 | 60 | 0 | 1 | 97 | 39 | 135 | 1.13e-16 | 74.3 |
| MS.gene44574.t1 | MTR_3g056270 | 40.206 | 97 | 58 | 0 | 1 | 97 | 58 | 154 | 2.00e-16 | 77.8 |
| MS.gene44574.t1 | MTR_3g056270 | 39.175 | 97 | 59 | 0 | 1 | 97 | 217 | 313 | 5.26e-15 | 73.6 |
| MS.gene44574.t1 | MTR_4g036240 | 40.206 | 97 | 58 | 0 | 1 | 97 | 58 | 154 | 2.20e-16 | 77.4 |
| MS.gene44574.t1 | MTR_3g056240 | 40.000 | 105 | 47 | 2 | 1 | 97 | 58 | 154 | 2.57e-16 | 76.3 |
| MS.gene44574.t1 | MTR_1g094230 | 38.144 | 97 | 60 | 0 | 1 | 97 | 58 | 154 | 2.87e-16 | 75.9 |
| MS.gene44574.t1 | MTR_6g039240 | 38.144 | 97 | 60 | 0 | 1 | 97 | 58 | 154 | 3.23e-16 | 75.9 |
| MS.gene44574.t1 | MTR_8g463820 | 38.144 | 97 | 60 | 0 | 1 | 97 | 58 | 154 | 4.10e-16 | 75.5 |
| MS.gene44574.t1 | MTR_4g022520 | 38.542 | 96 | 59 | 0 | 2 | 97 | 19 | 114 | 4.71e-16 | 73.9 |
| MS.gene44574.t1 | MTR_5g085220 | 38.144 | 97 | 60 | 0 | 1 | 97 | 58 | 154 | 9.95e-16 | 72.4 |
| MS.gene44574.t1 | MTR_3g084550 | 36.082 | 97 | 62 | 0 | 1 | 97 | 17 | 113 | 3.35e-15 | 69.7 |
| MS.gene44574.t1 | MTR_2g048560 | 32.653 | 98 | 66 | 0 | 1 | 98 | 58 | 155 | 2.16e-14 | 71.6 |
| MS.gene44574.t1 | MTR_1g072220 | 34.021 | 97 | 64 | 0 | 1 | 97 | 17 | 113 | 5.45e-14 | 66.6 |
| MS.gene44574.t1 | MTR_8g479260 | 38.542 | 96 | 59 | 0 | 1 | 96 | 60 | 155 | 6.17e-14 | 70.5 |
| MS.gene44574.t1 | MTR_2g008650 | 38.542 | 96 | 59 | 0 | 1 | 96 | 60 | 155 | 1.28e-13 | 69.3 |
| MS.gene44574.t1 | MTR_6g013455 | 28.667 | 150 | 92 | 2 | 1 | 145 | 52 | 191 | 1.91e-13 | 67.8 |
| MS.gene44574.t1 | MTR_8g078450 | 30.822 | 146 | 91 | 2 | 18 | 159 | 2 | 141 | 2.15e-13 | 65.5 |
| MS.gene44574.t1 | MTR_5g068430 | 34.343 | 99 | 65 | 0 | 1 | 99 | 51 | 149 | 5.44e-13 | 65.5 |
| MS.gene44574.t1 | MTR_2g054710 | 36.458 | 96 | 61 | 0 | 1 | 96 | 60 | 155 | 7.28e-13 | 66.2 |
| MS.gene44574.t1 | MTR_7g032985 | 50.000 | 56 | 28 | 0 | 43 | 98 | 1 | 56 | 9.03e-13 | 61.6 |
| MS.gene44574.t1 | MTR_2g099880 | 36.082 | 97 | 62 | 0 | 1 | 97 | 23 | 119 | 6.21e-12 | 61.2 |
| MS.gene44574.t1 | MTR_7g117425 | 46.667 | 60 | 32 | 0 | 1 | 60 | 52 | 111 | 5.97e-11 | 60.5 |
| MS.gene44574.t1 | MTR_8g088810 | 37.113 | 97 | 61 | 0 | 1 | 97 | 58 | 154 | 8.94e-11 | 60.5 |
| MS.gene44574.t1 | MTR_8g469510 | 61.364 | 44 | 17 | 0 | 1 | 44 | 41 | 84 | 9.08e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 68 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGAGGTTGTTAAGTTTA+AGG | 0.165629 | 1.3:+20640665 | MS.gene44574:CDS |
| TCAAGCGACGGTCGAATTCT+TGG | 0.253420 | 1.3:-20640834 | None:intergenic |
| CCTGAACCTTGGTCTTCATT+TGG | 0.290711 | 1.3:-20639981 | None:intergenic |
| ACTCGGAGCAATAGAGAAAT+AGG | 0.307180 | 1.3:-20639914 | None:intergenic |
| CCAAATGAAGACCAAGGTTC+AGG | 0.315365 | 1.3:+20639981 | MS.gene44574:CDS |
| AGTTCTCAGATTCCACAATA+TGG | 0.332187 | 1.3:+20640012 | MS.gene44574:CDS |
| TTCTCTATTGCTCCGAGTGT+TGG | 0.335622 | 1.3:+20639919 | MS.gene44574:CDS |
| CGGTGACATTGTTGATGGTT+TGG | 0.347370 | 1.3:+20640935 | MS.gene44574:CDS |
| ACATCCCCTTCCCTTAGTTT+CGG | 0.360166 | 1.3:-20639880 | None:intergenic |
| GATTATGTACGCGCAAGATT+GGG | 0.374837 | 1.3:+20640034 | MS.gene44574:CDS |
| GTTTGGTTGAGGGTGATGAT+TGG | 0.374950 | 1.3:+20640952 | MS.gene44574:CDS |
| GGATTATGTACGCGCAAGAT+TGG | 0.375682 | 1.3:+20640033 | MS.gene44574:CDS |
| TTGGACCAATCACCGGCATT+GGG | 0.387793 | 1.3:-20640815 | None:intergenic |
| TACTGTATTGTAGACATCAT+TGG | 0.395501 | 1.3:+20640176 | MS.gene44574:intron |
| CTGCTGAGAAGGAGTACGTT+TGG | 0.402498 | 1.3:+20640216 | MS.gene44574:CDS |
| CTTGGACCAATCACCGGCAT+TGG | 0.403677 | 1.3:-20640816 | None:intergenic |
| ATTTGGAAAAGTAACTTGTA+AGG | 0.407009 | 1.3:-20639964 | None:intergenic |
| TCTCTATTGCTCCGAGTGTT+GGG | 0.407971 | 1.3:+20639920 | MS.gene44574:CDS |
| GCAAGATTGGGGACGTTTGT+GGG | 0.409796 | 1.3:+20640046 | MS.gene44574:CDS |
| CATTGTTGATGGTTTGGTTG+AGG | 0.410592 | 1.3:+20640941 | MS.gene44574:CDS |
| GTTGTCGGTGACATTGTTGA+TGG | 0.417362 | 1.3:+20640930 | MS.gene44574:CDS |
| CCCCTTCCCTTAGTTTCGGC+TGG | 0.417650 | 1.3:-20639876 | None:intergenic |
| TACTGTTGATTACGACCATT+TGG | 0.417983 | 1.3:+20640071 | MS.gene44574:CDS |
| TGCTGGTCATAGGGTGAGCT+TGG | 0.424066 | 1.3:+20640872 | MS.gene44574:CDS |
| TGGTTGAGGGTGATGATTGG+TGG | 0.425622 | 1.3:+20640955 | MS.gene44574:CDS |
| ATTGTTGATGGTTTGGTTGA+GGG | 0.436277 | 1.3:+20640942 | MS.gene44574:CDS |
| ACATCCCCAATGCCGGTGAT+TGG | 0.437961 | 1.3:+20640810 | MS.gene44574:CDS |
| CGCAAGATTGGGGACGTTTG+TGG | 0.441215 | 1.3:+20640045 | MS.gene44574:CDS |
| ATGTGTTCCAGCCGAAACTA+AGG | 0.459540 | 1.3:+20639869 | MS.gene44574:CDS |
| TTAACAACCTCATCAATGTC+AGG | 0.465589 | 1.3:-20640657 | None:intergenic |
| GAGGTTGTTAAGTTTAAGGA+GGG | 0.479611 | 1.3:+20640669 | MS.gene44574:CDS |
| TTCAATACTCACCAACCAAA+TGG | 0.490463 | 1.3:-20640086 | None:intergenic |
| TGAATGATGTTGTTGACAAT+GGG | 0.491991 | 1.3:+20640901 | MS.gene44574:CDS |
| CAGTAGTAAGCACCAAAGTC+GGG | 0.502969 | 1.3:-20641011 | None:intergenic |
| TTGAATGATGTTGTTGACAA+TGG | 0.504599 | 1.3:+20640900 | MS.gene44574:CDS |
| CTTTGGTGCTTACTACTGCA+AGG | 0.505637 | 1.3:+20641016 | MS.gene44574:CDS |
| AATTCGACCGTCGCTTGAAG+AGG | 0.508626 | 1.3:+20640839 | MS.gene44574:CDS |
| GACTGGGATTTCTGCTGAGA+AGG | 0.512732 | 1.3:+20640205 | MS.gene44574:CDS |
| AGAGGTGTTACACCCGACTT+TGG | 0.514620 | 1.3:+20640999 | MS.gene44574:CDS |
| TGAGGTTGTTAAGTTTAAGG+AGG | 0.523181 | 1.3:+20640668 | MS.gene44574:CDS |
| GCAGTAGTAAGCACCAAAGT+CGG | 0.526570 | 1.3:-20641012 | None:intergenic |
| ATTATGTACGCGCAAGATTG+GGG | 0.540376 | 1.3:+20640035 | MS.gene44574:CDS |
| ATTGGTGGTATCCTACCTGT+AGG | 0.543665 | 1.3:+20640970 | MS.gene44574:CDS |
| ACTCTCACTTTCCTGAACCT+TGG | 0.553908 | 1.3:-20639992 | None:intergenic |
| GACAATGGGAATTATGTTGT+CGG | 0.561718 | 1.3:+20640915 | MS.gene44574:CDS |
| TTTGGTGCTTACTACTGCAA+GGG | 0.563438 | 1.3:+20641017 | MS.gene44574:CDS |
| TGAGCAAACATCCCCAATGC+CGG | 0.564869 | 1.3:+20640803 | MS.gene44574:CDS |
| CGAATTCTTGGACCAATCAC+CGG | 0.566155 | 1.3:-20640822 | None:intergenic |
| CGCGTACATAATCCATATTG+TGG | 0.573885 | 1.3:-20640024 | None:intergenic |
| CGTGAAGCATGTGTTTCAGA+TGG | 0.579234 | 1.3:+20641043 | MS.gene44574:CDS |
| ATGTGTTTCAGATGGTCCCT+AGG | 0.579460 | 1.3:+20641051 | MS.gene44574:CDS |
| AACACCTCTATGAAACCTAC+AGG | 0.580637 | 1.3:-20640985 | None:intergenic |
| TCCAGCCGAAACTAAGGGAA+GGG | 0.590127 | 1.3:+20639875 | MS.gene44574:CDS |
| TTGTGGAGGATTATTGTGCA+TGG | 0.590835 | 1.3:+20640777 | MS.gene44574:intron |
| AGGAGTACGTTTGGATGGCA+AGG | 0.591545 | 1.3:+20640225 | MS.gene44574:CDS |
| CCAGCCGAAACTAAGGGAAG+GGG | 0.591641 | 1.3:+20639876 | MS.gene44574:CDS |
| TGAGAAGGAGTACGTTTGGA+TGG | 0.602062 | 1.3:+20640220 | MS.gene44574:CDS |
| TGTGTTCCAGCCGAAACTAA+GGG | 0.606420 | 1.3:+20639870 | MS.gene44574:CDS |
| TATCAACCCTGACATTGATG+AGG | 0.606528 | 1.3:+20640650 | MS.gene44574:CDS |
| TTCCAGCCGAAACTAAGGGA+AGG | 0.610353 | 1.3:+20639874 | MS.gene44574:CDS |
| GTTGATTACGACCATTTGGT+TGG | 0.612055 | 1.3:+20640075 | MS.gene44574:CDS |
| GAACGGTATGACCCAACACT+CGG | 0.616521 | 1.3:-20639931 | None:intergenic |
| AGGTTGTTAAGTTTAAGGAG+GGG | 0.621121 | 1.3:+20640670 | MS.gene44574:CDS |
| CCTACCTGTAGGTTTCATAG+AGG | 0.627319 | 1.3:+20640981 | MS.gene44574:CDS |
| CCTCTATGAAACCTACAGGT+AGG | 0.630558 | 1.3:-20640981 | None:intergenic |
| TGGACCAATCACCGGCATTG+GGG | 0.634412 | 1.3:-20640814 | None:intergenic |
| TAACAACCTCATCAATGTCA+GGG | 0.638796 | 1.3:-20640656 | None:intergenic |
| TGTAAGGATGAAGTGTCGAA+CGG | 0.656660 | 1.3:-20639948 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTGTGTTTGTATTTTG+TGG | + | chr1.3:20640760-20640779 | MS.gene44574:intron | 20.0% |
| ! | ACAAACTAAAGTACAACAAT+AGG | - | chr1.3:20640484-20640503 | None:intergenic | 25.0% |
| !! | ATTTGGAAAAGTAACTTGTA+AGG | - | chr1.3:20639967-20639986 | None:intergenic | 25.0% |
| !!! | TGTTGTACTTTAGTTTGTTA+AGG | + | chr1.3:20640486-20640505 | MS.gene44574:intron | 25.0% |
| !!! | TTGGTAATTTTTTGTAGACA+AGG | + | chr1.3:20640590-20640609 | MS.gene44574:intron | 25.0% |
| !!! | TTTTTAGTTTTATTGTCGTG+TGG | + | chr1.3:20640127-20640146 | MS.gene44574:intron | 25.0% |
| CATGGGAAAAATCTTTGAAT+GGG | + | chr1.3:20640455-20640474 | MS.gene44574:intron | 30.0% | |
| GTTAAGGTTAAGATATTTCG+AGG | + | chr1.3:20640502-20640521 | MS.gene44574:intron | 30.0% | |
| TACAACAATAAACAACTGAC+AGG | - | chr1.3:20640733-20640752 | None:intergenic | 30.0% | |
| TACTGTATTGTAGACATCAT+TGG | + | chr1.3:20640176-20640195 | MS.gene44574:intron | 30.0% | |
| TCATGGGAAAAATCTTTGAA+TGG | + | chr1.3:20640454-20640473 | MS.gene44574:intron | 30.0% | |
| TGAATGATGTTGTTGACAAT+GGG | + | chr1.3:20640901-20640920 | MS.gene44574:CDS | 30.0% | |
| TGATGAGGTTGTTAAGTTTA+AGG | + | chr1.3:20640665-20640684 | MS.gene44574:CDS | 30.0% | |
| TTGAATGATGTTGTTGACAA+TGG | + | chr1.3:20640900-20640919 | MS.gene44574:CDS | 30.0% | |
| ! | TTTGTGTTTGTATTTTGTGG+AGG | + | chr1.3:20640763-20640782 | MS.gene44574:intron | 30.0% |
| !! | TTTATTGTCGTGTGGTTTTA+TGG | + | chr1.3:20640135-20640154 | MS.gene44574:intron | 30.0% |
| !!! | ACATCATTGGTTTTATGACT+GGG | + | chr1.3:20640189-20640208 | MS.gene44574:CDS | 30.0% |
| AGGTTGTTAAGTTTAAGGAG+GGG | + | chr1.3:20640670-20640689 | MS.gene44574:CDS | 35.0% | |
| AGTTCTCAGATTCCACAATA+TGG | + | chr1.3:20640012-20640031 | MS.gene44574:CDS | 35.0% | |
| GACAATGGGAATTATGTTGT+CGG | + | chr1.3:20640915-20640934 | MS.gene44574:CDS | 35.0% | |
| GAGGTTGTTAAGTTTAAGGA+GGG | + | chr1.3:20640669-20640688 | MS.gene44574:CDS | 35.0% | |
| GGTTAAGATATTTCGAGGTA+TGG | + | chr1.3:20640507-20640526 | MS.gene44574:intron | 35.0% | |
| TAACAACCTCATCAATGTCA+GGG | - | chr1.3:20640659-20640678 | None:intergenic | 35.0% | |
| TGAGGTTGTTAAGTTTAAGG+AGG | + | chr1.3:20640668-20640687 | MS.gene44574:CDS | 35.0% | |
| TTAACAACCTCATCAATGTC+AGG | - | chr1.3:20640660-20640679 | None:intergenic | 35.0% | |
| TTCAATACTCACCAACCAAA+TGG | - | chr1.3:20640089-20640108 | None:intergenic | 35.0% | |
| ! | ACTTTTCCAAATGAAGACCA+AGG | + | chr1.3:20639975-20639994 | MS.gene44574:CDS | 35.0% |
| ! | TACTGTTGATTACGACCATT+TGG | + | chr1.3:20640071-20640090 | MS.gene44574:CDS | 35.0% |
| !! | ATTGTTGATGGTTTGGTTGA+GGG | + | chr1.3:20640942-20640961 | MS.gene44574:CDS | 35.0% |
| !!! | GACATCATTGGTTTTATGAC+TGG | + | chr1.3:20640188-20640207 | MS.gene44574:intron | 35.0% |
| !!! | TAGTGGTTTTGGTGAATCTT+TGG | + | chr1.3:20640571-20640590 | MS.gene44574:intron | 35.0% |
| !!! | TGTCAGTGTTTTTTGTGAAG+AGG | + | chr1.3:20640298-20640317 | MS.gene44574:intron | 35.0% |
| AAAAACTCCTCTTCAAGCGA+CGG | - | chr1.3:20640849-20640868 | None:intergenic | 40.0% | |
| AACACCTCTATGAAACCTAC+AGG | - | chr1.3:20640988-20641007 | None:intergenic | 40.0% | |
| AAGGTTGAGTGTGCATTGTT+TGG | + | chr1.3:20640405-20640424 | MS.gene44574:intron | 40.0% | |
| ACTCGGAGCAATAGAGAAAT+AGG | - | chr1.3:20639917-20639936 | None:intergenic | 40.0% | |
| ATTATCGGTCAGTTGTCTCA+TGG | + | chr1.3:20640345-20640364 | MS.gene44574:intron | 40.0% | |
| ATTATGTACGCGCAAGATTG+GGG | + | chr1.3:20640035-20640054 | MS.gene44574:CDS | 40.0% | |
| ATTCACCAAAACCACTACGA+AGG | - | chr1.3:20640568-20640587 | None:intergenic | 40.0% | |
| CAACTCGATCACAATCATCT+TGG | - | chr1.3:20640254-20640273 | None:intergenic | 40.0% | |
| CGCGTACATAATCCATATTG+TGG | - | chr1.3:20640027-20640046 | None:intergenic | 40.0% | |
| GATTATGTACGCGCAAGATT+GGG | + | chr1.3:20640034-20640053 | MS.gene44574:CDS | 40.0% | |
| GTTGATTACGACCATTTGGT+TGG | + | chr1.3:20640075-20640094 | MS.gene44574:CDS | 40.0% | |
| TATCAACCCTGACATTGATG+AGG | + | chr1.3:20640650-20640669 | MS.gene44574:CDS | 40.0% | |
| TTGTGGAGGATTATTGTGCA+TGG | + | chr1.3:20640777-20640796 | MS.gene44574:intron | 40.0% | |
| !! | CATTGTTGATGGTTTGGTTG+AGG | + | chr1.3:20640941-20640960 | MS.gene44574:CDS | 40.0% |
| !! | TGGATTGGTTATTTGTCGTG+TGG | + | chr1.3:20640365-20640384 | MS.gene44574:intron | 40.0% |
| !! | TGTAAGGATGAAGTGTCGAA+CGG | - | chr1.3:20639951-20639970 | None:intergenic | 40.0% |
| !! | TTTGGTGCTTACTACTGCAA+GGG | + | chr1.3:20641017-20641036 | MS.gene44574:CDS | 40.0% |
| !!! | AGTTTTTGGTTGCTGGTCAT+AGG | + | chr1.3:20640862-20640881 | MS.gene44574:CDS | 40.0% |
| !!! | GTGTGGTTTTATGGTTGTTG+AGG | + | chr1.3:20640144-20640163 | MS.gene44574:intron | 40.0% |
| !!! | GTTTTTGGTTGCTGGTCATA+GGG | + | chr1.3:20640863-20640882 | MS.gene44574:CDS | 40.0% |
| ACATCCCCTTCCCTTAGTTT+CGG | - | chr1.3:20639883-20639902 | None:intergenic | 45.0% | |
| ACTCTCACTTTCCTGAACCT+TGG | - | chr1.3:20639995-20640014 | None:intergenic | 45.0% | |
| ATGTGTTCCAGCCGAAACTA+AGG | + | chr1.3:20639869-20639888 | MS.gene44574:CDS | 45.0% | |
| CAGTAGTAAGCACCAAAGTC+GGG | - | chr1.3:20641014-20641033 | None:intergenic | 45.0% | |
| CCAAAACCACTACGAAGGAT+TGG | - | chr1.3:20640563-20640582 | None:intergenic | 45.0% | |
| CCAAATGAAGACCAAGGTTC+AGG | + | chr1.3:20639981-20640000 | MS.gene44574:CDS | 45.0% | |
| CCTACCTGTAGGTTTCATAG+AGG | + | chr1.3:20640981-20641000 | MS.gene44574:CDS | 45.0% | |
| CCTCTATGAAACCTACAGGT+AGG | - | chr1.3:20640984-20641003 | None:intergenic | 45.0% | |
| CGAATTCTTGGACCAATCAC+CGG | - | chr1.3:20640825-20640844 | None:intergenic | 45.0% | |
| CGTGAAGCATGTGTTTCAGA+TGG | + | chr1.3:20641043-20641062 | MS.gene44574:CDS | 45.0% | |
| GCAGTAGTAAGCACCAAAGT+CGG | - | chr1.3:20641015-20641034 | None:intergenic | 45.0% | |
| GGATTATGTACGCGCAAGAT+TGG | + | chr1.3:20640033-20640052 | MS.gene44574:CDS | 45.0% | |
| GTTGTCGGTGACATTGTTGA+TGG | + | chr1.3:20640930-20640949 | MS.gene44574:CDS | 45.0% | |
| GTTTGGTTGAGGGTGATGAT+TGG | + | chr1.3:20640952-20640971 | MS.gene44574:CDS | 45.0% | |
| TCTCTATTGCTCCGAGTGTT+GGG | + | chr1.3:20639920-20639939 | MS.gene44574:CDS | 45.0% | |
| TGGCATTCAACACGTTCTAG+AGG | - | chr1.3:20640620-20640639 | None:intergenic | 45.0% | |
| TGTGTTCCAGCCGAAACTAA+GGG | + | chr1.3:20639870-20639889 | MS.gene44574:CDS | 45.0% | |
| TTCCCATGAGCTTGAGCAAA+AGG | - | chr1.3:20640443-20640462 | None:intergenic | 45.0% | |
| TTCTCTATTGCTCCGAGTGT+TGG | + | chr1.3:20639919-20639938 | MS.gene44574:CDS | 45.0% | |
| ! | ATTGGTGGTATCCTACCTGT+AGG | + | chr1.3:20640970-20640989 | MS.gene44574:CDS | 45.0% |
| ! | CCAATCCTTCGTAGTGGTTT+TGG | + | chr1.3:20640560-20640579 | MS.gene44574:intron | 45.0% |
| ! | CCTGAACCTTGGTCTTCATT+TGG | - | chr1.3:20639984-20640003 | None:intergenic | 45.0% |
| ! | GACCTTTTGCTCAAGCTCAT+GGG | + | chr1.3:20640438-20640457 | MS.gene44574:intron | 45.0% |
| ! | GGCATTCAACACGTTCTAGA+GGG | - | chr1.3:20640619-20640638 | None:intergenic | 45.0% |
| ! | GTCGCTTGAAGAGGAGTTTT+TGG | + | chr1.3:20640848-20640867 | MS.gene44574:CDS | 45.0% |
| ! | TGACCTTTTGCTCAAGCTCA+TGG | + | chr1.3:20640437-20640456 | MS.gene44574:intron | 45.0% |
| ! | TGAGAAGGAGTACGTTTGGA+TGG | + | chr1.3:20640220-20640239 | MS.gene44574:CDS | 45.0% |
| !! | AGGGTTGATAAGAATCCTGG+TGG | - | chr1.3:20640640-20640659 | None:intergenic | 45.0% |
| !! | CGGTGACATTGTTGATGGTT+TGG | + | chr1.3:20640935-20640954 | MS.gene44574:CDS | 45.0% |
| !! | CTTTGGTGCTTACTACTGCA+AGG | + | chr1.3:20641016-20641035 | MS.gene44574:CDS | 45.0% |
| !! | GGTTTTATGGTTGTTGAGGC+TGG | + | chr1.3:20640148-20640167 | MS.gene44574:intron | 45.0% |
| !! | GTCAGGGTTGATAAGAATCC+TGG | - | chr1.3:20640643-20640662 | None:intergenic | 45.0% |
| !! | TGATCGAGTTGACTGATGAC+AGG | + | chr1.3:20640263-20640282 | MS.gene44574:intron | 45.0% |
| !!! | GAAGAGGAGTTTTTGGTTGC+TGG | + | chr1.3:20640855-20640874 | MS.gene44574:CDS | 45.0% |
| !!! | TTTGTTTTATTTTATATTAT+CGG | + | chr1.3:20640330-20640349 | MS.gene44574:intron | 5.0% |
| AATTCGACCGTCGCTTGAAG+AGG | + | chr1.3:20640839-20640858 | MS.gene44574:CDS | 50.0% | |
| AGAACGTGTTGAATGCCACC+AGG | + | chr1.3:20640622-20640641 | MS.gene44574:intron | 50.0% | |
| CGGTCAGTTGTCTCATGGAT+TGG | + | chr1.3:20640350-20640369 | MS.gene44574:intron | 50.0% | |
| GAACGGTATGACCCAACACT+CGG | - | chr1.3:20639934-20639953 | None:intergenic | 50.0% | |
| GACTGGGATTTCTGCTGAGA+AGG | + | chr1.3:20640205-20640224 | MS.gene44574:CDS | 50.0% | |
| GCAAGATTGGGGACGTTTGT+GGG | + | chr1.3:20640046-20640065 | MS.gene44574:CDS | 50.0% | |
| TCAAGCGACGGTCGAATTCT+TGG | - | chr1.3:20640837-20640856 | None:intergenic | 50.0% | |
| TCCAGCCGAAACTAAGGGAA+GGG | + | chr1.3:20639875-20639894 | MS.gene44574:CDS | 50.0% | |
| TGACTGCCAATCCTTCGTAG+TGG | + | chr1.3:20640554-20640573 | MS.gene44574:intron | 50.0% | |
| TGAGCAAACATCCCCAATGC+CGG | + | chr1.3:20640803-20640822 | MS.gene44574:CDS | 50.0% | |
| TGGTTGAGGGTGATGATTGG+TGG | + | chr1.3:20640955-20640974 | MS.gene44574:CDS | 50.0% | |
| TTCCAGCCGAAACTAAGGGA+AGG | + | chr1.3:20639874-20639893 | MS.gene44574:CDS | 50.0% | |
| TTGGACCAATCACCGGCATT+GGG | - | chr1.3:20640818-20640837 | None:intergenic | 50.0% | |
| ! | AGGAGTACGTTTGGATGGCA+AGG | + | chr1.3:20640225-20640244 | MS.gene44574:CDS | 50.0% |
| ! | CTGCTGAGAAGGAGTACGTT+TGG | + | chr1.3:20640216-20640235 | MS.gene44574:CDS | 50.0% |
| !! | AGAGGTGTTACACCCGACTT+TGG | + | chr1.3:20640999-20641018 | MS.gene44574:CDS | 50.0% |
| ACATCCCCAATGCCGGTGAT+TGG | + | chr1.3:20640810-20640829 | MS.gene44574:CDS | 55.0% | |
| CCAGCCGAAACTAAGGGAAG+GGG | + | chr1.3:20639876-20639895 | MS.gene44574:CDS | 55.0% | |
| CGCAAGATTGGGGACGTTTG+TGG | + | chr1.3:20640045-20640064 | MS.gene44574:CDS | 55.0% | |
| CTTGGACCAATCACCGGCAT+TGG | - | chr1.3:20640819-20640838 | None:intergenic | 55.0% | |
| GCACACTCAACCTTGCCACT+GGG | - | chr1.3:20640399-20640418 | None:intergenic | 55.0% | |
| TGCACACTCAACCTTGCCAC+TGG | - | chr1.3:20640400-20640419 | None:intergenic | 55.0% | |
| TGCTGGTCATAGGGTGAGCT+TGG | + | chr1.3:20640872-20640891 | MS.gene44574:CDS | 55.0% | |
| TGGACCAATCACCGGCATTG+GGG | - | chr1.3:20640817-20640836 | None:intergenic | 55.0% | |
| CCCCTTCCCTTAGTTTCGGC+TGG | - | chr1.3:20639879-20639898 | None:intergenic | 60.0% | |
| CGTGTGGTTGTGTTGCCCAG+TGG | + | chr1.3:20640381-20640400 | MS.gene44574:intron | 60.0% | |
| GGTTGTGTTGCCCAGTGGCA+AGG | + | chr1.3:20640386-20640405 | MS.gene44574:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 20639850 | 20641072 | 20639850 | ID=MS.gene44574 |
| chr1.3 | mRNA | 20639850 | 20641072 | 20639850 | ID=MS.gene44574.t1;Parent=MS.gene44574 |
| chr1.3 | exon | 20639850 | 20640096 | 20639850 | ID=MS.gene44574.t1.exon1;Parent=MS.gene44574.t1 |
| chr1.3 | CDS | 20639850 | 20640096 | 20639850 | ID=cds.MS.gene44574.t1;Parent=MS.gene44574.t1 |
| chr1.3 | exon | 20640189 | 20640246 | 20640189 | ID=MS.gene44574.t1.exon2;Parent=MS.gene44574.t1 |
| chr1.3 | CDS | 20640189 | 20640246 | 20640189 | ID=cds.MS.gene44574.t1;Parent=MS.gene44574.t1 |
| chr1.3 | exon | 20640644 | 20640691 | 20640644 | ID=MS.gene44574.t1.exon3;Parent=MS.gene44574.t1 |
| chr1.3 | CDS | 20640644 | 20640691 | 20640644 | ID=cds.MS.gene44574.t1;Parent=MS.gene44574.t1 |
| chr1.3 | exon | 20640785 | 20641072 | 20640785 | ID=MS.gene44574.t1.exon4;Parent=MS.gene44574.t1 |
| chr1.3 | CDS | 20640785 | 20641072 | 20640785 | ID=cds.MS.gene44574.t1;Parent=MS.gene44574.t1 |
| Gene Sequence |
| Protein sequence |
