Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44576.t1 | XP_003616287.1 | 56.4 | 353 | 136 | 2 | 1 | 336 | 58 | 409 | 8.00E-107 | 397.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44576.t1 | G7K1P7 | 56.4 | 353 | 136 | 2 | 1 | 336 | 58 | 409 | 5.8e-107 | 397.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052447 | MS.gene44576 | 0.857783 | 1.29E-62 | -1.69E-46 |
| MS.gene05531 | MS.gene44576 | 0.816378 | 5.70E-52 | -1.69E-46 |
| MS.gene055952 | MS.gene44576 | 0.852568 | 4.24E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44576.t1 | MTR_5g078250 | 56.374 | 353 | 136 | 2 | 1 | 336 | 58 | 409 | 1.38e-137 | 400 |
| MS.gene44576.t1 | MTR_8g062030 | 50.992 | 353 | 156 | 1 | 1 | 336 | 58 | 410 | 1.89e-123 | 366 |
| MS.gene44576.t1 | MTR_1g075850 | 50.425 | 353 | 127 | 3 | 1 | 336 | 52 | 373 | 8.09e-114 | 340 |
| MS.gene44576.t1 | MTR_0042s0170 | 58.020 | 293 | 69 | 6 | 46 | 336 | 1 | 241 | 2.55e-100 | 301 |
| MS.gene44576.t1 | MTR_4g046077 | 55.273 | 275 | 118 | 4 | 46 | 316 | 1 | 274 | 8.14e-96 | 290 |
| MS.gene44576.t1 | MTR_4g036240 | 34.085 | 355 | 211 | 5 | 1 | 336 | 58 | 408 | 1.06e-60 | 203 |
| MS.gene44576.t1 | MTR_3g056270 | 33.803 | 355 | 212 | 5 | 1 | 336 | 217 | 567 | 4.21e-58 | 199 |
| MS.gene44576.t1 | MTR_3g056270 | 37.671 | 146 | 91 | 0 | 1 | 146 | 58 | 203 | 4.40e-25 | 106 |
| MS.gene44576.t1 | MTR_2g048560 | 30.141 | 355 | 229 | 4 | 1 | 336 | 58 | 412 | 4.38e-53 | 183 |
| MS.gene44576.t1 | MTR_4g036240 | 33.333 | 330 | 197 | 5 | 26 | 336 | 3 | 328 | 7.85e-53 | 181 |
| MS.gene44576.t1 | MTR_6g052340 | 52.688 | 186 | 67 | 3 | 3 | 167 | 56 | 241 | 1.13e-52 | 184 |
| MS.gene44576.t1 | MTR_8g479260 | 31.214 | 346 | 217 | 5 | 1 | 326 | 60 | 404 | 2.49e-49 | 173 |
| MS.gene44576.t1 | MTR_2g008650 | 31.214 | 346 | 217 | 5 | 1 | 326 | 60 | 404 | 5.86e-49 | 172 |
| MS.gene44576.t1 | MTR_4g036240 | 32.342 | 269 | 159 | 5 | 87 | 336 | 1 | 265 | 1.07e-39 | 145 |
| MS.gene44576.t1 | MTR_8g059025 | 76.543 | 81 | 19 | 0 | 1 | 81 | 58 | 138 | 3.67e-38 | 133 |
| MS.gene44576.t1 | MTR_3g081610 | 41.176 | 170 | 70 | 4 | 167 | 336 | 10 | 149 | 7.65e-36 | 129 |
| MS.gene44576.t1 | MTR_6g051890 | 46.207 | 145 | 71 | 1 | 166 | 310 | 155 | 292 | 8.11e-36 | 134 |
| MS.gene44576.t1 | MTR_6g051890 | 45.205 | 146 | 79 | 1 | 1 | 145 | 62 | 207 | 2.91e-30 | 119 |
| MS.gene44576.t1 | MTR_2g048550 | 25.852 | 352 | 225 | 7 | 1 | 325 | 58 | 400 | 2.32e-33 | 129 |
| MS.gene44576.t1 | MTR_8g062060 | 26.957 | 345 | 226 | 4 | 9 | 334 | 66 | 403 | 2.65e-33 | 129 |
| MS.gene44576.t1 | MTR_6g445520 | 27.719 | 285 | 164 | 5 | 85 | 336 | 1 | 276 | 3.92e-30 | 119 |
| MS.gene44576.t1 | MTR_4g134870 | 39.474 | 152 | 85 | 1 | 167 | 318 | 117 | 261 | 5.22e-28 | 113 |
| MS.gene44576.t1 | MTR_8g467450 | 64.634 | 82 | 29 | 0 | 1 | 82 | 58 | 139 | 8.04e-28 | 106 |
| MS.gene44576.t1 | MTR_3g056240 | 37.662 | 154 | 80 | 2 | 1 | 146 | 58 | 203 | 5.16e-26 | 106 |
| MS.gene44576.t1 | MTR_2g062200 | 38.411 | 151 | 89 | 2 | 1 | 149 | 15 | 163 | 9.93e-26 | 102 |
| MS.gene44576.t1 | MTR_8g088810 | 30.992 | 242 | 142 | 4 | 1 | 217 | 58 | 299 | 1.46e-25 | 104 |
| MS.gene44576.t1 | MTR_6g039240 | 30.396 | 227 | 127 | 5 | 1 | 209 | 58 | 271 | 2.61e-25 | 103 |
| MS.gene44576.t1 | MTR_8g463820 | 30.088 | 226 | 127 | 5 | 1 | 208 | 58 | 270 | 1.13e-24 | 101 |
| MS.gene44576.t1 | MTR_8g461360 | 39.231 | 130 | 79 | 0 | 1 | 130 | 1 | 130 | 1.17e-24 | 100 |
| MS.gene44576.t1 | MTR_1g094230 | 29.956 | 227 | 128 | 5 | 1 | 209 | 58 | 271 | 1.85e-24 | 101 |
| MS.gene44576.t1 | MTR_6g033945 | 35.644 | 202 | 71 | 4 | 75 | 226 | 32 | 224 | 3.30e-24 | 99.0 |
| MS.gene44576.t1 | MTR_1g060700 | 37.356 | 174 | 60 | 2 | 46 | 170 | 1 | 174 | 7.63e-24 | 102 |
| MS.gene44576.t1 | MTR_2g054710 | 30.435 | 207 | 126 | 3 | 1 | 190 | 60 | 265 | 3.24e-23 | 97.4 |
| MS.gene44576.t1 | MTR_3g116750 | 42.241 | 116 | 66 | 1 | 1 | 116 | 58 | 172 | 5.42e-22 | 91.7 |
| MS.gene44576.t1 | MTR_3g095950 | 42.241 | 116 | 66 | 1 | 1 | 116 | 58 | 172 | 5.42e-22 | 91.7 |
| MS.gene44576.t1 | MTR_4g016120 | 42.241 | 116 | 66 | 1 | 1 | 116 | 49 | 163 | 8.80e-22 | 90.9 |
| MS.gene44576.t1 | MTR_7g032985 | 57.746 | 71 | 30 | 0 | 43 | 113 | 1 | 71 | 2.12e-21 | 87.0 |
| MS.gene44576.t1 | MTR_4g471610 | 41.379 | 116 | 67 | 1 | 1 | 116 | 58 | 172 | 4.84e-21 | 89.0 |
| MS.gene44576.t1 | MTR_3g078440 | 41.379 | 116 | 67 | 1 | 1 | 116 | 58 | 172 | 4.84e-21 | 89.0 |
| MS.gene44576.t1 | MTR_8g036090 | 41.379 | 116 | 67 | 1 | 1 | 116 | 58 | 172 | 4.84e-21 | 89.0 |
| MS.gene44576.t1 | MTR_7g093810 | 41.379 | 116 | 67 | 1 | 1 | 116 | 58 | 172 | 6.86e-21 | 88.6 |
| MS.gene44576.t1 | MTR_1g050500 | 25.602 | 332 | 204 | 9 | 21 | 328 | 2 | 314 | 9.95e-21 | 93.2 |
| MS.gene44576.t1 | MTR_1g036740 | 41.379 | 116 | 67 | 1 | 1 | 116 | 58 | 172 | 1.04e-20 | 88.2 |
| MS.gene44576.t1 | MTR_8g096680 | 41.379 | 116 | 67 | 1 | 1 | 116 | 58 | 172 | 1.04e-20 | 88.2 |
| MS.gene44576.t1 | MTR_4g028320 | 41.379 | 116 | 67 | 1 | 1 | 116 | 39 | 153 | 2.16e-20 | 86.7 |
| MS.gene44576.t1 | MTR_7g089660 | 34.752 | 141 | 77 | 2 | 1 | 139 | 58 | 185 | 8.79e-20 | 87.0 |
| MS.gene44576.t1 | MTR_6g013455 | 28.319 | 226 | 150 | 4 | 1 | 222 | 52 | 269 | 1.24e-19 | 87.4 |
| MS.gene44576.t1 | MTR_4g022520 | 41.739 | 115 | 66 | 1 | 2 | 116 | 19 | 132 | 1.56e-19 | 85.9 |
| MS.gene44576.t1 | MTR_3g084550 | 39.655 | 116 | 69 | 1 | 1 | 116 | 17 | 131 | 3.29e-19 | 82.8 |
| MS.gene44576.t1 | MTR_5g085220 | 40.541 | 111 | 66 | 0 | 1 | 111 | 58 | 168 | 1.69e-18 | 82.0 |
| MS.gene44576.t1 | MTR_1g072220 | 37.931 | 116 | 71 | 1 | 1 | 116 | 17 | 131 | 5.38e-18 | 79.3 |
| MS.gene44576.t1 | MTR_7g110100 | 24.855 | 346 | 236 | 7 | 2 | 326 | 59 | 401 | 1.40e-17 | 84.0 |
| MS.gene44576.t1 | MTR_1g105785 | 22.096 | 353 | 239 | 9 | 2 | 328 | 59 | 401 | 1.54e-17 | 84.0 |
| MS.gene44576.t1 | MTR_5g055160 | 26.794 | 209 | 113 | 2 | 1 | 209 | 58 | 226 | 4.31e-17 | 80.5 |
| MS.gene44576.t1 | MTR_8g078450 | 36.875 | 160 | 89 | 5 | 18 | 173 | 2 | 153 | 5.37e-17 | 77.4 |
| MS.gene44576.t1 | MTR_5g007120 | 26.667 | 210 | 115 | 2 | 1 | 209 | 27 | 198 | 1.24e-16 | 78.2 |
| MS.gene44576.t1 | MTR_4g040040 | 36.283 | 113 | 67 | 2 | 216 | 325 | 3 | 113 | 1.53e-16 | 76.6 |
| MS.gene44576.t1 | MTR_5g056060 | 26.667 | 210 | 115 | 2 | 1 | 209 | 52 | 223 | 2.13e-16 | 78.2 |
| MS.gene44576.t1 | MTR_2g099880 | 39.655 | 116 | 69 | 1 | 1 | 116 | 23 | 137 | 4.78e-16 | 74.3 |
| MS.gene44576.t1 | MTR_7g104000 | 26.667 | 210 | 116 | 3 | 1 | 209 | 52 | 224 | 1.17e-15 | 75.9 |
| MS.gene44576.t1 | MTR_6g069230 | 27.624 | 181 | 108 | 4 | 4 | 165 | 157 | 333 | 6.47e-15 | 75.1 |
| MS.gene44576.t1 | MTR_6g051880 | 25.328 | 229 | 148 | 5 | 13 | 236 | 2 | 212 | 5.74e-14 | 72.8 |
| MS.gene44576.t1 | MTR_2g032570 | 37.288 | 118 | 71 | 2 | 1 | 116 | 58 | 174 | 3.23e-13 | 67.4 |
| MS.gene44576.t1 | MTR_3g037500 | 29.814 | 161 | 106 | 4 | 13 | 171 | 22 | 177 | 1.52e-12 | 67.4 |
| MS.gene44576.t1 | MTR_5g068430 | 34.343 | 99 | 65 | 0 | 1 | 99 | 51 | 149 | 2.97e-12 | 65.1 |
| MS.gene44576.t1 | MTR_3g067530 | 35.000 | 120 | 72 | 2 | 18 | 137 | 2 | 115 | 1.08e-11 | 62.0 |
| MS.gene44576.t1 | MTR_3g044760 | 23.464 | 179 | 113 | 3 | 9 | 170 | 66 | 237 | 4.50e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44576.t1 | AT1G52950 | 24.620 | 329 | 212 | 9 | 1 | 298 | 57 | 380 | 8.90e-19 | 87.8 |
Find 0 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTATTTCAAAAATGTAT+AGG | + | 56807:8194-8213 | MS.gene44576:intron | 10.0% |
| !!! | TTTTTTTTTTAAGAATACCT+TGG | - | 56807:8115-8134 | MS.gene44576:intergenic | 15.0% |
| !!! | AATTTTGTGTTTGTATTTTG+TGG | + | 56807:7605-7624 | MS.gene44576:intron | 20.0% |
| !!! | CATGTTATTTTGATATTCTT+AGG | + | 56807:7977-7996 | MS.gene44576:intron | 20.0% |
| ! | ACAAACTAAAGTACAACAAT+AGG | - | 56807:7329-7348 | MS.gene44576:intergenic | 25.0% |
| !! | AATGTCTTGCAATTTTGTTA+TGG | + | 56807:8151-8170 | MS.gene44576:intron | 25.0% |
| !! | ATTTGGAAAAGTAACTTGTA+AGG | - | 56807:6812-6831 | MS.gene44576:intergenic | 25.0% |
| !! | TTTTGATATTCTTAGGTATG+AGG | + | 56807:7984-8003 | MS.gene44576:intron | 25.0% |
| !!! | TGTTGTACTTTAGTTTGTTA+AGG | + | 56807:7331-7350 | MS.gene44576:intron | 25.0% |
| !!! | TTGGTAATTTTTTGTAGACA+AGG | + | 56807:7435-7454 | MS.gene44576:intron | 25.0% |
| !!! | TTTTTAGTTTTATTGTCGTG+TGG | + | 56807:6972-6991 | MS.gene44576:intron | 25.0% |
| ATTCAAAGTCGAGAAATCAT+CGG | + | 56807:8275-8294 | MS.gene44576:CDS | 30.0% | |
| GATAACATTAGCATTACCTA+GGG | - | 56807:7915-7934 | MS.gene44576:intergenic | 30.0% | |
| GCTAATGTTATCCTAATGAT+TGG | + | 56807:7923-7942 | MS.gene44576:intron | 30.0% | |
| GTTAAGGTTAAGATATTTCG+AGG | + | 56807:7347-7366 | MS.gene44576:intron | 30.0% | |
| TACAACAATAAACAACTGAC+AGG | - | 56807:7578-7597 | MS.gene44576:intergenic | 30.0% | |
| TACTGTATTGTAGACATCAT+TGG | + | 56807:7021-7040 | MS.gene44576:intron | 30.0% | |
| TCATGGGAAAATCTTTGAAT+GGG | + | 56807:7300-7319 | MS.gene44576:CDS | 30.0% | |
| TGAATGATGTTGTTGACAAT+GGG | + | 56807:7746-7765 | MS.gene44576:CDS | 30.0% | |
| TGATGAGGTTGTTAAGTTTA+AGG | + | 56807:7510-7529 | MS.gene44576:CDS | 30.0% | |
| TTGAATGATGTTGTTGACAA+TGG | + | 56807:7745-7764 | MS.gene44576:CDS | 30.0% | |
| ! | TTTGTGTTTGTATTTTGTGG+AGG | + | 56807:7608-7627 | MS.gene44576:intron | 30.0% |
| ! | TTTGTTATGGATTTGTGTGT+TGG | + | 56807:8164-8183 | MS.gene44576:intron | 30.0% |
| !! | TTTATTGTCGTGTGGTTTTA+TGG | + | 56807:6980-6999 | MS.gene44576:intron | 30.0% |
| !!! | ACATCATTGGTTTTATGACT+GGG | + | 56807:7034-7053 | MS.gene44576:CDS | 30.0% |
| AAGCTCATCAGAATAAAACC+CGG | - | 56807:8229-8248 | MS.gene44575:intergenic | 35.0% | |
| AATGTATAGGCCAAAAATGC+CGG | + | 56807:8207-8226 | MS.gene44576:intron | 35.0% | |
| ACACAAAGACACCAATCATT+AGG | - | 56807:7937-7956 | MS.gene44576:intergenic | 35.0% | |
| AGGTAAACAGTGTAGTGATT+TGG | + | 56807:8080-8099 | MS.gene44576:CDS | 35.0% | |
| AGGTTGTTAAGTTTAAGGAG+GGG | + | 56807:7515-7534 | MS.gene44576:CDS | 35.0% | |
| AGTTCTCAGATTCCACAATA+TGG | + | 56807:6857-6876 | MS.gene44576:CDS | 35.0% | |
| CTCATGGGAAAATCTTTGAA+TGG | + | 56807:7299-7318 | MS.gene44576:CDS | 35.0% | |
| GACAATGGGAATTATGTTGT+CGG | + | 56807:7760-7779 | MS.gene44576:CDS | 35.0% | |
| GAGGTTGTTAAGTTTAAGGA+GGG | + | 56807:7514-7533 | MS.gene44576:CDS | 35.0% | |
| GGATAACATTAGCATTACCT+AGG | - | 56807:7916-7935 | MS.gene44576:intergenic | 35.0% | |
| GGTTAAGATATTTCGAGGTA+TGG | + | 56807:7352-7371 | MS.gene44576:intron | 35.0% | |
| TAACAACCTCATCAATGTCA+GGG | - | 56807:7504-7523 | MS.gene44576:intergenic | 35.0% | |
| TGAGGTTGTTAAGTTTAAGG+AGG | + | 56807:7513-7532 | MS.gene44576:CDS | 35.0% | |
| TTAACAACCTCATCAATGTC+AGG | - | 56807:7505-7524 | MS.gene44576:intergenic | 35.0% | |
| TTCAATACTCACCAACCAAA+TGG | - | 56807:6934-6953 | MS.gene44576:intergenic | 35.0% | |
| ! | ACTTTTCCAAATGAAGACCA+AGG | + | 56807:6820-6839 | MS.gene44576:CDS | 35.0% |
| ! | AGAATAAAACCCGGCATTTT+TGG | - | 56807:8220-8239 | MS.gene44576:intergenic | 35.0% |
| ! | TACTGTTGATTACGACCATT+TGG | + | 56807:6916-6935 | MS.gene44576:CDS | 35.0% |
| !! | ATTGTTGATGGTTTGGTTGA+GGG | + | 56807:7787-7806 | MS.gene44576:CDS | 35.0% |
| !! | GTTGTGTTTGTTGTGTTTGA+CGG | + | 56807:8039-8058 | MS.gene44576:CDS | 35.0% |
| !!! | GACATCATTGGTTTTATGAC+TGG | + | 56807:7033-7052 | MS.gene44576:intron | 35.0% |
| !!! | TAGTGGTTTTGGTGAATCTT+TGG | + | 56807:7416-7435 | MS.gene44576:intron | 35.0% |
| !!! | TGTCAGTGTTTTTTGTGAAG+AGG | + | 56807:7144-7163 | MS.gene44576:intron | 35.0% |
| AAAAACTCCTCTTCAAGCGA+CGG | - | 56807:7694-7713 | MS.gene44575:intergenic | 40.0% | |
| AACACCTCTATGAAACCTAC+AGG | - | 56807:7833-7852 | MS.gene44575:intergenic | 40.0% | |
| AAGGTTGAGTGTGCATTGTT+TGG | + | 56807:7251-7270 | MS.gene44576:CDS | 40.0% | |
| ACTCGGAGCAATAGAGAAAT+AGG | - | 56807:6762-6781 | MS.gene44576:intergenic | 40.0% | |
| ATGTATAGGCCAAAAATGCC+GGG | + | 56807:8208-8227 | MS.gene44576:intron | 40.0% | |
| ATTATCGGTCAGTTGTCTCA+TGG | + | 56807:7191-7210 | MS.gene44576:intron | 40.0% | |
| ATTATGTACGCGCAAGATTG+GGG | + | 56807:6880-6899 | MS.gene44576:CDS | 40.0% | |
| ATTCACCAAAACCACTACGA+AGG | - | 56807:7413-7432 | MS.gene44576:intergenic | 40.0% | |
| CAACTCGATCACAATCATCT+TGG | - | 56807:7100-7119 | MS.gene44576:intergenic | 40.0% | |
| CGCGTACATAATCCATATTG+TGG | - | 56807:6872-6891 | MS.gene44576:intergenic | 40.0% | |
| GATTATGTACGCGCAAGATT+GGG | + | 56807:6879-6898 | MS.gene44576:CDS | 40.0% | |
| GTTATGGATTTGTGTGTTGG+TGG | + | 56807:8167-8186 | MS.gene44576:intron | 40.0% | |
| GTTGATTACGACCATTTGGT+TGG | + | 56807:6920-6939 | MS.gene44576:CDS | 40.0% | |
| TATCAACCCTGACATTGATG+AGG | + | 56807:7495-7514 | MS.gene44576:CDS | 40.0% | |
| TATGAGGTGAAGATCTGTGT+CGG | + | 56807:8000-8019 | MS.gene44576:CDS | 40.0% | |
| TTGTGGAGGATTATTGTGCA+TGG | + | 56807:7622-7641 | MS.gene44576:intron | 40.0% | |
| ! | GGTGATATGCAGAATTTGCT+AGG | + | 56807:8060-8079 | MS.gene44576:CDS | 40.0% |
| !! | ACAGTGTAGTGATTTGGTGT+CGG | + | 56807:8086-8105 | MS.gene44576:CDS | 40.0% |
| !! | CATTGTTGATGGTTTGGTTG+AGG | + | 56807:7786-7805 | MS.gene44576:CDS | 40.0% |
| !! | TGGATTGGTTATTTGTCGTG+TGG | + | 56807:7211-7230 | MS.gene44576:intron | 40.0% |
| !! | TGTAAGGATGAAGTGTCGAA+CGG | - | 56807:6796-6815 | MS.gene44576:intergenic | 40.0% |
| !! | TTTGGTGCTTACTACTGCAA+GGG | + | 56807:7862-7881 | MS.gene44576:CDS | 40.0% |
| !!! | AGTTTTTGGTTGCTGGTCAT+AGG | + | 56807:7707-7726 | MS.gene44576:CDS | 40.0% |
| !!! | GTGTGGTTTTATGGTTGTTG+AGG | + | 56807:6989-7008 | MS.gene44576:intron | 40.0% |
| !!! | GTTTTTGGTTGCTGGTCATA+GGG | + | 56807:7708-7727 | MS.gene44576:CDS | 40.0% |
| ACATCCCCTTCCCTTAGTTT+CGG | - | 56807:6728-6747 | MS.gene44576:intergenic | 45.0% | |
| ACTCTCACTTTCCTGAACCT+TGG | - | 56807:6840-6859 | MS.gene44576:intergenic | 45.0% | |
| ATGTGTTCCAGCCGAAACTA+AGG | + | 56807:6714-6733 | MS.gene44576:CDS | 45.0% | |
| ATGTGTTTCAGATGGTCCCT+AGG | + | 56807:7896-7915 | MS.gene44576:CDS | 45.0% | |
| CAGTAGTAAGCACCAAAGTC+GGG | - | 56807:7859-7878 | MS.gene44576:intergenic | 45.0% | |
| CCAAAACCACTACGAAGGAT+TGG | - | 56807:7408-7427 | MS.gene44576:intergenic | 45.0% | |
| CCAAATGAAGACCAAGGTTC+AGG | + | 56807:6826-6845 | MS.gene44576:CDS | 45.0% | |
| CCTACCTGTAGGTTTCATAG+AGG | + | 56807:7826-7845 | MS.gene44576:CDS | 45.0% | |
| CCTCTATGAAACCTACAGGT+AGG | - | 56807:7829-7848 | MS.gene44576:intergenic | 45.0% | |
| CGAATTCTTGGACCAATCAC+CGG | - | 56807:7670-7689 | MS.gene44576:intergenic | 45.0% | |
| CGTGAAGCATGTGTTTCAGA+TGG | + | 56807:7888-7907 | MS.gene44576:CDS | 45.0% | |
| GCAGTAGTAAGCACCAAAGT+CGG | - | 56807:7860-7879 | MS.gene44576:intergenic | 45.0% | |
| GGATTATGTACGCGCAAGAT+TGG | + | 56807:6878-6897 | MS.gene44576:CDS | 45.0% | |
| GTTGTCGGTGACATTGTTGA+TGG | + | 56807:7775-7794 | MS.gene44576:CDS | 45.0% | |
| GTTTGGTTGAGGGTGATGAT+TGG | + | 56807:7797-7816 | MS.gene44576:CDS | 45.0% | |
| TCTCTATTGCTCCGAGTGTT+GGG | + | 56807:6765-6784 | MS.gene44576:CDS | 45.0% | |
| TGGCATTCAACACGTTCTAG+AGG | - | 56807:7465-7484 | MS.gene44576:intergenic | 45.0% | |
| TGTGTTCCAGCCGAAACTAA+GGG | + | 56807:6715-6734 | MS.gene44576:CDS | 45.0% | |
| TTCCCATGAGCTTGAGCAAA+AGG | - | 56807:7289-7308 | MS.gene44576:intergenic | 45.0% | |
| TTCTCTATTGCTCCGAGTGT+TGG | + | 56807:6764-6783 | MS.gene44576:CDS | 45.0% | |
| ! | ATTGGTGGTATCCTACCTGT+AGG | + | 56807:7815-7834 | MS.gene44576:CDS | 45.0% |
| ! | CCAATCCTTCGTAGTGGTTT+TGG | + | 56807:7405-7424 | MS.gene44576:intron | 45.0% |
| ! | CCTGAACCTTGGTCTTCATT+TGG | - | 56807:6829-6848 | MS.gene44576:intergenic | 45.0% |
| ! | GACCTTTTGCTCAAGCTCAT+GGG | + | 56807:7284-7303 | MS.gene44576:CDS | 45.0% |
| ! | GGCATTCAACACGTTCTAGA+GGG | - | 56807:7464-7483 | MS.gene44576:intergenic | 45.0% |
| ! | GTCGCTTGAAGAGGAGTTTT+TGG | + | 56807:7693-7712 | MS.gene44576:CDS | 45.0% |
| ! | TGACCTTTTGCTCAAGCTCA+TGG | + | 56807:7283-7302 | MS.gene44576:CDS | 45.0% |
| ! | TGCTGAGAAGGAGTACGTTT+GGG | + | 56807:7062-7081 | MS.gene44576:CDS | 45.0% |
| !! | AGGGTTGATAAGAATCCTGG+TGG | - | 56807:7485-7504 | MS.gene44576:intergenic | 45.0% |
| !! | CGGTGACATTGTTGATGGTT+TGG | + | 56807:7780-7799 | MS.gene44576:CDS | 45.0% |
| !! | CTTTGGTGCTTACTACTGCA+AGG | + | 56807:7861-7880 | MS.gene44576:CDS | 45.0% |
| !! | GATGAGCTTCTGAAGCTGAA+GGG | + | 56807:8240-8259 | MS.gene44576:CDS | 45.0% |
| !! | GGTTTTATGGTTGTTGAGGC+TGG | + | 56807:6993-7012 | MS.gene44576:intron | 45.0% |
| !! | GTCAGGGTTGATAAGAATCC+TGG | - | 56807:7488-7507 | MS.gene44576:intergenic | 45.0% |
| !! | TGATCGAGTTGACTGATGAC+AGG | + | 56807:7109-7128 | MS.gene44576:CDS | 45.0% |
| !! | TGATGAGCTTCTGAAGCTGA+AGG | + | 56807:8239-8258 | MS.gene44576:CDS | 45.0% |
| !!! | GAAGAGGAGTTTTTGGTTGC+TGG | + | 56807:7700-7719 | MS.gene44576:CDS | 45.0% |
| !!! | TTTGTTTTATTTTATATTAT+CGG | + | 56807:7176-7195 | MS.gene44576:intron | 5.0% |
| AATTCGACCGTCGCTTGAAG+AGG | + | 56807:7684-7703 | MS.gene44576:CDS | 50.0% | |
| AGAACGTGTTGAATGCCACC+AGG | + | 56807:7467-7486 | MS.gene44576:intron | 50.0% | |
| CGGTCAGTTGTCTCATGGAT+TGG | + | 56807:7196-7215 | MS.gene44576:intron | 50.0% | |
| GAACGGTATGACCCAACACT+CGG | - | 56807:6779-6798 | MS.gene44576:intergenic | 50.0% | |
| GACTGGGATTTCTGCTGAGA+AGG | + | 56807:7050-7069 | MS.gene44576:CDS | 50.0% | |
| GCAAGATTGGGGACGTTTGT+GGG | + | 56807:6891-6910 | MS.gene44576:CDS | 50.0% | |
| TCAAGCGACGGTCGAATTCT+TGG | - | 56807:7682-7701 | MS.gene44576:intergenic | 50.0% | |
| TCCAGCCGAAACTAAGGGAA+GGG | + | 56807:6720-6739 | MS.gene44576:CDS | 50.0% | |
| TGACTGCCAATCCTTCGTAG+TGG | + | 56807:7399-7418 | MS.gene44576:intron | 50.0% | |
| TGAGCAAACATCCCCAATGC+CGG | + | 56807:7648-7667 | MS.gene44576:CDS | 50.0% | |
| TGGTTGAGGGTGATGATTGG+TGG | + | 56807:7800-7819 | MS.gene44576:CDS | 50.0% | |
| TTCCAGCCGAAACTAAGGGA+AGG | + | 56807:6719-6738 | MS.gene44576:CDS | 50.0% | |
| TTGGACCAATCACCGGCATT+GGG | - | 56807:7663-7682 | MS.gene44576:intergenic | 50.0% | |
| ! | CTGCTGAGAAGGAGTACGTT+TGG | + | 56807:7061-7080 | MS.gene44576:CDS | 50.0% |
| ! | GAGAAGGAGTACGTTTGGGA+TGG | + | 56807:7066-7085 | MS.gene44576:CDS | 50.0% |
| !! | AGAGGTGTTACACCCGACTT+TGG | + | 56807:7844-7863 | MS.gene44576:CDS | 50.0% |
| ACATCCCCAATGCCGGTGAT+TGG | + | 56807:7655-7674 | MS.gene44576:CDS | 55.0% | |
| CCAGCCGAAACTAAGGGAAG+GGG | + | 56807:6721-6740 | MS.gene44576:CDS | 55.0% | |
| CGCAAGATTGGGGACGTTTG+TGG | + | 56807:6890-6909 | MS.gene44576:CDS | 55.0% | |
| CTTGGACCAATCACCGGCAT+TGG | - | 56807:7664-7683 | MS.gene44576:intergenic | 55.0% | |
| GCACACTCAACCTTGCCACT+GGG | - | 56807:7245-7264 | MS.gene44576:intergenic | 55.0% | |
| TGCACACTCAACCTTGCCAC+TGG | - | 56807:7246-7265 | MS.gene44576:intergenic | 55.0% | |
| TGCTGGTCATAGGGTGAGCT+TGG | + | 56807:7717-7736 | MS.gene44576:CDS | 55.0% | |
| TGGACCAATCACCGGCATTG+GGG | - | 56807:7662-7681 | MS.gene44576:intergenic | 55.0% | |
| ! | ATCTGTGTCGGCGATGGTGA+TGG | + | 56807:8012-8031 | MS.gene44576:CDS | 55.0% |
| ! | GGAGTACGTTTGGGATGGCA+AGG | + | 56807:7071-7090 | MS.gene44576:CDS | 55.0% |
| ! | GTGAAGATCTGTGTCGGCGA+TGG | + | 56807:8006-8025 | MS.gene44576:CDS | 55.0% |
| ! | TCTGTGTCGGCGATGGTGAT+GGG | + | 56807:8013-8032 | MS.gene44576:CDS | 55.0% |
| !! | TGATTTGGTGTCGGCTGCCA+AGG | + | 56807:8095-8114 | MS.gene44576:CDS | 55.0% |
| CCCCTTCCCTTAGTTTCGGC+TGG | - | 56807:6724-6743 | MS.gene44576:intergenic | 60.0% | |
| CGTGTGGTTGTGTTGCCCAG+TGG | + | 56807:7227-7246 | MS.gene44576:intron | 60.0% | |
| GGTTGTGTTGCCCAGTGGCA+AGG | + | 56807:7232-7251 | MS.gene44576:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 56807 | gene | 6695 | 8318 | 6695 | ID=MS.gene44576 |
| 56807 | mRNA | 6695 | 8318 | 6695 | ID=MS.gene44576.t1;Parent=MS.gene44576 |
| 56807 | exon | 6695 | 6941 | 6695 | ID=MS.gene44576.t1.exon1;Parent=MS.gene44576.t1 |
| 56807 | CDS | 6695 | 6941 | 6695 | ID=cds.MS.gene44576.t1;Parent=MS.gene44576.t1 |
| 56807 | exon | 7034 | 7130 | 7034 | ID=MS.gene44576.t1.exon2;Parent=MS.gene44576.t1 |
| 56807 | CDS | 7034 | 7130 | 7034 | ID=cds.MS.gene44576.t1;Parent=MS.gene44576.t1 |
| 56807 | exon | 7247 | 7334 | 7247 | ID=MS.gene44576.t1.exon3;Parent=MS.gene44576.t1 |
| 56807 | CDS | 7247 | 7334 | 7247 | ID=cds.MS.gene44576.t1;Parent=MS.gene44576.t1 |
| 56807 | exon | 7469 | 7536 | 7469 | ID=MS.gene44576.t1.exon4;Parent=MS.gene44576.t1 |
| 56807 | CDS | 7469 | 7536 | 7469 | ID=cds.MS.gene44576.t1;Parent=MS.gene44576.t1 |
| 56807 | exon | 7630 | 7917 | 7630 | ID=MS.gene44576.t1.exon5;Parent=MS.gene44576.t1 |
| 56807 | CDS | 7630 | 7917 | 7630 | ID=cds.MS.gene44576.t1;Parent=MS.gene44576.t1 |
| 56807 | exon | 7999 | 8116 | 7999 | ID=MS.gene44576.t1.exon6;Parent=MS.gene44576.t1 |
| 56807 | CDS | 7999 | 8116 | 7999 | ID=cds.MS.gene44576.t1;Parent=MS.gene44576.t1 |
| 56807 | exon | 8216 | 8318 | 8216 | ID=MS.gene44576.t1.exon7;Parent=MS.gene44576.t1 |
| 56807 | CDS | 8216 | 8318 | 8216 | ID=cds.MS.gene44576.t1;Parent=MS.gene44576.t1 |
| Gene Sequence |
| Protein sequence |
