Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44880.t1 | XP_003615608.1 | 100 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 4.20E-111 | 410.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44880.t1 | Q9LUX9 | 70.8 | 202 | 59 | 0 | 1 | 202 | 1 | 202 | 6.0e-82 | 305.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44880.t1 | G7K6C8 | 100.0 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 3.0e-111 | 410.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene44880 | MS.gene40165 | PPI |
| MS.gene44880 | MS.gene028582 | PPI |
| MS.gene28697 | MS.gene44880 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44880.t1 | MTR_5g070030 | 100.000 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 9.76e-151 | 416 |
| MS.gene44880.t1 | MTR_2g081810 | 69.347 | 199 | 60 | 1 | 4 | 202 | 3 | 200 | 2.71e-102 | 294 |
| MS.gene44880.t1 | MTR_4g091900 | 69.802 | 202 | 60 | 1 | 1 | 202 | 1 | 201 | 3.12e-101 | 291 |
| MS.gene44880.t1 | MTR_8g466030 | 69.347 | 199 | 60 | 1 | 4 | 202 | 3 | 200 | 8.92e-101 | 290 |
| MS.gene44880.t1 | MTR_2g011080 | 65.829 | 199 | 67 | 1 | 4 | 202 | 3 | 200 | 3.94e-95 | 276 |
| MS.gene44880.t1 | MTR_4g091900 | 68.947 | 190 | 58 | 1 | 13 | 202 | 1 | 189 | 2.73e-93 | 270 |
| MS.gene44880.t1 | MTR_4g069250 | 63.959 | 197 | 71 | 0 | 5 | 201 | 52 | 248 | 1.42e-91 | 268 |
| MS.gene44880.t1 | MTR_2g011080 | 64.767 | 193 | 67 | 1 | 10 | 202 | 4 | 195 | 1.91e-90 | 263 |
| MS.gene44880.t1 | MTR_5g019620 | 60.406 | 197 | 78 | 0 | 5 | 201 | 53 | 249 | 1.83e-88 | 260 |
| MS.gene44880.t1 | MTR_2g011080 | 64.667 | 150 | 52 | 1 | 53 | 202 | 1 | 149 | 9.71e-67 | 202 |
| MS.gene44880.t1 | MTR_8g466080 | 68.966 | 116 | 36 | 0 | 87 | 202 | 1 | 116 | 1.98e-53 | 167 |
| MS.gene44880.t1 | MTR_4g091890 | 68.376 | 117 | 33 | 1 | 86 | 202 | 1 | 113 | 2.45e-52 | 164 |
| MS.gene44880.t1 | MTR_8g466110 | 45.600 | 125 | 41 | 4 | 53 | 177 | 1 | 98 | 6.94e-24 | 91.3 |
| MS.gene44880.t1 | MTR_8g466150 | 45.600 | 125 | 41 | 4 | 53 | 177 | 1 | 98 | 6.94e-24 | 91.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44880.t1 | AT5G58800 | 70.792 | 202 | 59 | 0 | 1 | 202 | 1 | 202 | 1.51e-108 | 310 |
| MS.gene44880.t1 | AT5G58800 | 70.792 | 202 | 59 | 0 | 1 | 202 | 1 | 202 | 1.51e-108 | 310 |
| MS.gene44880.t1 | AT5G54500 | 71.859 | 199 | 55 | 1 | 4 | 202 | 3 | 200 | 1.99e-104 | 299 |
| MS.gene44880.t1 | AT4G27270 | 71.357 | 199 | 56 | 1 | 4 | 202 | 3 | 200 | 1.27e-103 | 297 |
| MS.gene44880.t1 | AT4G27270 | 70.000 | 190 | 56 | 1 | 13 | 202 | 1 | 189 | 1.71e-96 | 279 |
| MS.gene44880.t1 | AT4G27270 | 70.000 | 190 | 56 | 1 | 13 | 202 | 1 | 189 | 1.71e-96 | 279 |
| MS.gene44880.t1 | AT4G36750 | 60.406 | 197 | 78 | 0 | 5 | 201 | 74 | 270 | 1.46e-89 | 264 |
| MS.gene44880.t1 | AT5G54500 | 58.500 | 200 | 74 | 3 | 4 | 203 | 3 | 193 | 1.04e-77 | 233 |
| MS.gene44880.t1 | AT4G27270 | 73.333 | 150 | 39 | 1 | 53 | 202 | 1 | 149 | 3.00e-76 | 226 |
Find 60 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGCTGATGCTTTGATATT+TGG | 0.205625 | 5.2:+59289097 | MS.gene44880:CDS |
| ATTCGATCCGAAAGAATTTC+AGG | 0.264514 | 5.2:-59289007 | None:intergenic |
| GCAAACCTGCTGGAATCTTT+TGG | 0.270899 | 5.2:+59289209 | MS.gene44880:CDS |
| AATTCTTTCGGATCGAATAT+TGG | 0.279333 | 5.2:+59289012 | MS.gene44880:CDS |
| TTTGAGATGGATGAGGTAAA+AGG | 0.353976 | 5.2:+59289697 | MS.gene44880:CDS |
| GTAAAAGGAGGCTCGGCTTA+TGG | 0.358303 | 5.2:+59289712 | MS.gene44880:CDS |
| AAGGCCTTCTTTGACGCTAC+TGG | 0.365059 | 5.2:+59289157 | MS.gene44880:CDS |
| ATACTCACGCTGAGAGTTCC+TGG | 0.369905 | 5.2:-59289255 | None:intergenic |
| TCAGCTACATCATCTGGTTT+AGG | 0.377031 | 5.2:-59289052 | None:intergenic |
| TGCAGGTATTACTCATTGTA+TGG | 0.383898 | 5.2:+59288779 | MS.gene44880:intron |
| AATGTATTTACCCTGGTAAA+AGG | 0.394202 | 5.2:-59289794 | None:intergenic |
| ACAGGTACCTGAAATTCTTT+CGG | 0.401906 | 5.2:+59289000 | MS.gene44880:intron |
| TTTGGAGTACTGGATTTAAC+GGG | 0.416410 | 5.2:+59289227 | MS.gene44880:CDS |
| GTTCCCCTTGGATACACCTT+TGG | 0.416898 | 5.2:+59289664 | MS.gene44880:CDS |
| TCAGCCTCCACAAGTTGTTC+CGG | 0.417062 | 5.2:-59289082 | None:intergenic |
| TTAATGTCAGCTACATCATC+TGG | 0.433955 | 5.2:-59289058 | None:intergenic |
| AAGAAGGCCTTGAGCTGGCT+TGG | 0.441508 | 5.2:-59289145 | None:intergenic |
| GGTATGCTTTATGTTCCCCT+TGG | 0.446986 | 5.2:+59289652 | MS.gene44880:CDS |
| GGAGGCTCGGCTTATGGCGC+TGG | 0.456356 | 5.2:+59289718 | MS.gene44880:CDS |
| TGACGCTACTGGAGAGTTGT+GGG | 0.458101 | 5.2:+59289168 | MS.gene44880:CDS |
| GCACTCGCAGGCAAACCTGC+TGG | 0.474276 | 5.2:+59289199 | MS.gene44880:CDS |
| TATGGCGCTGGAACTTTCGC+TGG | 0.474798 | 5.2:+59289730 | MS.gene44880:CDS |
| TTGACGCTACTGGAGAGTTG+TGG | 0.476817 | 5.2:+59289167 | MS.gene44880:CDS |
| CTTGGATACACCTTTGGAAG+TGG | 0.482304 | 5.2:+59289670 | MS.gene44880:CDS |
| TCGAATATTGGAAAAGATGA+AGG | 0.496681 | 5.2:+59289024 | MS.gene44880:CDS |
| AAGGTGTTGAAGCAACACTT+TGG | 0.525141 | 5.2:+59288852 | MS.gene44880:CDS |
| TACTGAGCTAGAGCTTCAGC+AGG | 0.532454 | 5.2:+59289771 | MS.gene44880:CDS |
| GCTGGAACTTTCGCTGGAGA+TGG | 0.533057 | 5.2:+59289736 | MS.gene44880:CDS |
| CTCAAACATGCCACTTCCAA+AGG | 0.535164 | 5.2:-59289680 | None:intergenic |
| CGTCAAAGAAGGCCTTGAGC+TGG | 0.538429 | 5.2:-59289150 | None:intergenic |
| CACTTCCAAAGGTGTATCCA+AGG | 0.550034 | 5.2:-59289669 | None:intergenic |
| TGCTGAAGCTCTAGCTCAGT+AGG | 0.555488 | 5.2:-59289769 | None:intergenic |
| GTGTTGAAGCAACACTTTGG+AGG | 0.556934 | 5.2:+59288855 | MS.gene44880:CDS |
| CATTAAGCCGGAACAACTTG+TGG | 0.557154 | 5.2:+59289075 | MS.gene44880:CDS |
| GTACTCCAAAAGATTCCAGC+AGG | 0.558946 | 5.2:-59289214 | None:intergenic |
| TGGGCGTCTCAAGCACTCGC+AGG | 0.560559 | 5.2:+59289187 | MS.gene44880:CDS |
| GTATGGACATGTGAACACTA+TGG | 0.567651 | 5.2:+59288796 | MS.gene44880:CDS |
| TGGAAGTGGCATGTTTGAGA+TGG | 0.571222 | 5.2:+59289684 | MS.gene44880:CDS |
| CTCTCCAGTAGCGTCAAAGA+AGG | 0.574680 | 5.2:-59289161 | None:intergenic |
| GGATGAGGTAAAAGGAGGCT+CGG | 0.576627 | 5.2:+59289705 | MS.gene44880:CDS |
| ATAACTCAGTTAGCTCATCA+TGG | 0.582402 | 5.2:+59289631 | MS.gene44880:CDS |
| TTTCAGCAATGTATTTACCC+TGG | 0.584614 | 5.2:-59289801 | None:intergenic |
| GCTACATCATCTGGTTTAGG+AGG | 0.591266 | 5.2:-59289049 | None:intergenic |
| TGTTGAAGCAACACTTTGGA+GGG | 0.594022 | 5.2:+59288856 | MS.gene44880:CDS |
| TGATGTAGCTGACATTAAGC+CGG | 0.602082 | 5.2:+59289063 | MS.gene44880:CDS |
| TATGATGCCAAGCCAGCTCA+AGG | 0.606898 | 5.2:+59289138 | MS.gene44880:CDS |
| ACTTCCAAAGGTGTATCCAA+GGG | 0.617578 | 5.2:-59289668 | None:intergenic |
| TGGCATGTTTGAGATGGATG+AGG | 0.617807 | 5.2:+59289690 | MS.gene44880:CDS |
| TTGGAGTACTGGATTTAACG+GGG | 0.629796 | 5.2:+59289228 | MS.gene44880:CDS |
| GGCATCATACCAAAACGTGA+AGG | 0.648138 | 5.2:-59289124 | None:intergenic |
| TTAGAAGATGACTATCACCA+AGG | 0.664695 | 5.2:+59288614 | None:intergenic |
| TGGCAAGAGAAGTACACAAG+GGG | 0.666285 | 5.2:+59288816 | MS.gene44880:CDS |
| TGCTTACACAATGTAGACCT+TGG | 0.673794 | 5.2:-59288631 | None:intergenic |
| TAAGCCGGAACAACTTGTGG+AGG | 0.677801 | 5.2:+59289078 | MS.gene44880:CDS |
| GAGATGGATGAGGTAAAAGG+AGG | 0.679998 | 5.2:+59289700 | MS.gene44880:CDS |
| CTTCCAAAGGTGTATCCAAG+GGG | 0.694155 | 5.2:-59289667 | None:intergenic |
| TATGGCAAGAGAAGTACACA+AGG | 0.698554 | 5.2:+59288814 | MS.gene44880:CDS |
| TGGAGTACTGGATTTAACGG+GGG | 0.708493 | 5.2:+59289229 | MS.gene44880:CDS |
| ATGGCAAGAGAAGTACACAA+GGG | 0.726547 | 5.2:+59288815 | MS.gene44880:CDS |
| GGCAAGAGAAGTACACAAGG+GGG | 0.735429 | 5.2:+59288817 | MS.gene44880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATTGTAAAAGAAAATATT+TGG | + | chr5.2:59288918-59288937 | MS.gene44880:intron | 15.0% |
| !! | TAGTTTAATCATAAAATGTT+TGG | + | chr5.2:59289404-59289423 | MS.gene44880:intron | 15.0% |
| !!! | TAGTATTGATCAAATTAAAA+TGG | + | chr5.2:59288700-59288719 | MS.gene44880:intron | 15.0% |
| !!! | TTGGTTTATTTTTTATGTAT+CGG | + | chr5.2:59289423-59289442 | MS.gene44880:intron | 15.0% |
| !! | ACTATTTATAAGATAGATAG+AGG | - | chr5.2:59289290-59289309 | None:intergenic | 20.0% |
| ! | AAGTAAAAAAAAGGGGAAAA+GGG | - | chr5.2:59288671-59288690 | None:intergenic | 25.0% |
| ! | ACATTGTGCAAGTAAAAAAA+AGG | - | chr5.2:59288680-59288699 | None:intergenic | 25.0% |
| ! | ATTGTGCAAGTAAAAAAAAG+GGG | - | chr5.2:59288678-59288697 | None:intergenic | 25.0% |
| ! | CATTGTGCAAGTAAAAAAAA+GGG | - | chr5.2:59288679-59288698 | None:intergenic | 25.0% |
| !! | ATTTGGATTCTTTTGTAGTT+AGG | + | chr5.2:59288935-59288954 | MS.gene44880:intron | 25.0% |
| AATGTATTTACCCTGGTAAA+AGG | - | chr5.2:59289797-59289816 | None:intergenic | 30.0% | |
| AATTCTTTCGGATCGAATAT+TGG | + | chr5.2:59289012-59289031 | MS.gene44880:CDS | 30.0% | |
| AGTAAAAAAAAGGGGAAAAG+GGG | - | chr5.2:59288670-59288689 | None:intergenic | 30.0% | |
| ATAAGATAGATAGAGGTCAA+AGG | - | chr5.2:59289283-59289302 | None:intergenic | 30.0% | |
| CAAGTAAAAAAAAGGGGAAA+AGG | - | chr5.2:59288672-59288691 | None:intergenic | 30.0% | |
| CCAAAAACATAAGACACATA+AGG | - | chr5.2:59289452-59289471 | None:intergenic | 30.0% | |
| GATTTCAGTTTGATGAAAAC+AGG | + | chr5.2:59288982-59289001 | MS.gene44880:intron | 30.0% | |
| GGAAAACAGATTGTGAAATT+CGG | - | chr5.2:59289341-59289360 | None:intergenic | 30.0% | |
| TAAGATAGATAGAGGTCAAA+GGG | - | chr5.2:59289282-59289301 | None:intergenic | 30.0% | |
| TCGAATATTGGAAAAGATGA+AGG | + | chr5.2:59289024-59289043 | MS.gene44880:CDS | 30.0% | |
| ! | CCTTATGTGTCTTATGTTTT+TGG | + | chr5.2:59289449-59289468 | MS.gene44880:intron | 30.0% |
| ! | TGTATCACATCAATTTTTGC+AGG | + | chr5.2:59288762-59288781 | MS.gene44880:intron | 30.0% |
| !!! | TTTTGGAGTACTGGATTTAA+CGG | + | chr5.2:59289226-59289245 | MS.gene44880:CDS | 30.0% |
| AAGATAGATAGAGGTCAAAG+GGG | - | chr5.2:59289281-59289300 | None:intergenic | 35.0% | |
| ACAGGTACCTGAAATTCTTT+CGG | + | chr5.2:59289000-59289019 | MS.gene44880:intron | 35.0% | |
| ATAACTCAGTTAGCTCATCA+TGG | + | chr5.2:59289631-59289650 | MS.gene44880:CDS | 35.0% | |
| ATTCGATCCGAAAGAATTTC+AGG | - | chr5.2:59289010-59289029 | None:intergenic | 35.0% | |
| CCATCAATAACTCTCATAAG+AGG | + | chr5.2:59289548-59289567 | MS.gene44880:intron | 35.0% | |
| CCTCTTATGAGAGTTATTGA+TGG | - | chr5.2:59289551-59289570 | None:intergenic | 35.0% | |
| GTAGTTAGGATCATTTGTCT+CGG | + | chr5.2:59288949-59288968 | MS.gene44880:intron | 35.0% | |
| TCAGTTTCCTCTTTATGTCA+TGG | + | chr5.2:59289592-59289611 | MS.gene44880:intron | 35.0% | |
| TCCTAATTTCTACTGACATG+TGG | + | chr5.2:59289315-59289334 | MS.gene44880:intron | 35.0% | |
| TGCAGGTATTACTCATTGTA+TGG | + | chr5.2:59288779-59288798 | MS.gene44880:intron | 35.0% | |
| TTAATGTCAGCTACATCATC+TGG | - | chr5.2:59289061-59289080 | None:intergenic | 35.0% | |
| TTTCAGCAATGTATTTACCC+TGG | - | chr5.2:59289804-59289823 | None:intergenic | 35.0% | |
| ! | GTTTTCCGCTACATTTTTCT+CGG | + | chr5.2:59289354-59289373 | MS.gene44880:intron | 35.0% |
| ! | TTTGAGATGGATGAGGTAAA+AGG | + | chr5.2:59289697-59289716 | MS.gene44880:CDS | 35.0% |
| ! | TTTTCCGCTACATTTTTCTC+GGG | + | chr5.2:59289355-59289374 | MS.gene44880:intron | 35.0% |
| !! | TTTGGAGTACTGGATTTAAC+GGG | + | chr5.2:59289227-59289246 | MS.gene44880:CDS | 35.0% |
| !!! | TTTGGTTTTCCTTCACGTTT+TGG | + | chr5.2:59289115-59289134 | MS.gene44880:CDS | 35.0% |
| CTTTATGTCATGGTTGCAGA+TGG | + | chr5.2:59289602-59289621 | MS.gene44880:intron | 40.0% | |
| GAGGCTGATGCTTTGATATT+TGG | + | chr5.2:59289097-59289116 | MS.gene44880:CDS | 40.0% | |
| GCCACATGTCAGTAGAAATT+AGG | - | chr5.2:59289319-59289338 | None:intergenic | 40.0% | |
| GTATGGACATGTGAACACTA+TGG | + | chr5.2:59288796-59288815 | MS.gene44880:CDS | 40.0% | |
| TAGTCCCGAGAAAAATGTAG+CGG | - | chr5.2:59289362-59289381 | None:intergenic | 40.0% | |
| TCTGCAACCATGACATAAAG+AGG | - | chr5.2:59289602-59289621 | None:intergenic | 40.0% | |
| TGATGTAGCTGACATTAAGC+CGG | + | chr5.2:59289063-59289082 | MS.gene44880:CDS | 40.0% | |
| TGCTTACACAATGTAGACCT+TGG | - | chr5.2:59288634-59288653 | None:intergenic | 40.0% | |
| TGTTGAAGCAACACTTTGGA+GGG | + | chr5.2:59288856-59288875 | MS.gene44880:CDS | 40.0% | |
| TGTTGGAGTTCATGCTTCAT+AGG | + | chr5.2:59289519-59289538 | MS.gene44880:intron | 40.0% | |
| ! | ACTTCCAAAGGTGTATCCAA+GGG | - | chr5.2:59289671-59289690 | None:intergenic | 40.0% |
| ! | ATGGCAAGAGAAGTACACAA+GGG | + | chr5.2:59288815-59288834 | MS.gene44880:CDS | 40.0% |
| ! | TATGGCAAGAGAAGTACACA+AGG | + | chr5.2:59288814-59288833 | MS.gene44880:CDS | 40.0% |
| ! | TCAGCTACATCATCTGGTTT+AGG | - | chr5.2:59289055-59289074 | None:intergenic | 40.0% |
| !! | AAGGTGTTGAAGCAACACTT+TGG | + | chr5.2:59288852-59288871 | MS.gene44880:CDS | 40.0% |
| !! | TTGGAGTACTGGATTTAACG+GGG | + | chr5.2:59289228-59289247 | MS.gene44880:CDS | 40.0% |
| CATTAAGCCGGAACAACTTG+TGG | + | chr5.2:59289075-59289094 | MS.gene44880:CDS | 45.0% | |
| GAGATGGATGAGGTAAAAGG+AGG | + | chr5.2:59289700-59289719 | MS.gene44880:CDS | 45.0% | |
| GGCATCATACCAAAACGTGA+AGG | - | chr5.2:59289127-59289146 | None:intergenic | 45.0% | |
| GGTATGCTTTATGTTCCCCT+TGG | + | chr5.2:59289652-59289671 | MS.gene44880:CDS | 45.0% | |
| GTACTCCAAAAGATTCCAGC+AGG | - | chr5.2:59289217-59289236 | None:intergenic | 45.0% | |
| GTGTTGAAGCAACACTTTGG+AGG | + | chr5.2:59288855-59288874 | MS.gene44880:CDS | 45.0% | |
| TGGAAGTGGCATGTTTGAGA+TGG | + | chr5.2:59289684-59289703 | MS.gene44880:CDS | 45.0% | |
| ! | CACTTCCAAAGGTGTATCCA+AGG | - | chr5.2:59289672-59289691 | None:intergenic | 45.0% |
| ! | CTCAAACATGCCACTTCCAA+AGG | - | chr5.2:59289683-59289702 | None:intergenic | 45.0% |
| ! | CTTCCAAAGGTGTATCCAAG+GGG | - | chr5.2:59289670-59289689 | None:intergenic | 45.0% |
| ! | CTTGGATACACCTTTGGAAG+TGG | + | chr5.2:59289670-59289689 | MS.gene44880:CDS | 45.0% |
| ! | GCAAACCTGCTGGAATCTTT+TGG | + | chr5.2:59289209-59289228 | MS.gene44880:CDS | 45.0% |
| ! | GCTACATCATCTGGTTTAGG+AGG | - | chr5.2:59289052-59289071 | None:intergenic | 45.0% |
| ! | TGGCAAGAGAAGTACACAAG+GGG | + | chr5.2:59288816-59288835 | MS.gene44880:CDS | 45.0% |
| ! | TGGCATGTTTGAGATGGATG+AGG | + | chr5.2:59289690-59289709 | MS.gene44880:CDS | 45.0% |
| !! | TGGAGTACTGGATTTAACGG+GGG | + | chr5.2:59289229-59289248 | MS.gene44880:CDS | 45.0% |
| !!! | GCTGGAATCTTTTGGAGTAC+TGG | + | chr5.2:59289217-59289236 | MS.gene44880:CDS | 45.0% |
| AAGGCCTTCTTTGACGCTAC+TGG | + | chr5.2:59289157-59289176 | MS.gene44880:CDS | 50.0% | |
| AAGGGGGCAGCTTCAATTGA+AGG | + | chr5.2:59288833-59288852 | MS.gene44880:CDS | 50.0% | |
| ATACTCACGCTGAGAGTTCC+TGG | - | chr5.2:59289258-59289277 | None:intergenic | 50.0% | |
| CTCTCCAGTAGCGTCAAAGA+AGG | - | chr5.2:59289164-59289183 | None:intergenic | 50.0% | |
| GGATGAGGTAAAAGGAGGCT+CGG | + | chr5.2:59289705-59289724 | MS.gene44880:CDS | 50.0% | |
| GTAAAAGGAGGCTCGGCTTA+TGG | + | chr5.2:59289712-59289731 | MS.gene44880:CDS | 50.0% | |
| GTTCCCCTTGGATACACCTT+TGG | + | chr5.2:59289664-59289683 | MS.gene44880:CDS | 50.0% | |
| TAAGCCGGAACAACTTGTGG+AGG | + | chr5.2:59289078-59289097 | MS.gene44880:CDS | 50.0% | |
| TACTGAGCTAGAGCTTCAGC+AGG | + | chr5.2:59289771-59289790 | MS.gene44880:CDS | 50.0% | |
| TATGATGCCAAGCCAGCTCA+AGG | + | chr5.2:59289138-59289157 | MS.gene44880:CDS | 50.0% | |
| TCAGCCTCCACAAGTTGTTC+CGG | - | chr5.2:59289085-59289104 | None:intergenic | 50.0% | |
| TGACGCTACTGGAGAGTTGT+GGG | + | chr5.2:59289168-59289187 | MS.gene44880:CDS | 50.0% | |
| TTGACGCTACTGGAGAGTTG+TGG | + | chr5.2:59289167-59289186 | MS.gene44880:CDS | 50.0% | |
| ! | AGTACTGGATTTAACGGGGG+TGG | + | chr5.2:59289232-59289251 | MS.gene44880:CDS | 50.0% |
| ! | CTTCAGCAGGCCTTTTACCA+GGG | + | chr5.2:59289784-59289803 | MS.gene44880:CDS | 50.0% |
| ! | GGCAAGAGAAGTACACAAGG+GGG | + | chr5.2:59288817-59288836 | MS.gene44880:CDS | 50.0% |
| ! | TGCTGAAGCTCTAGCTCAGT+AGG | - | chr5.2:59289772-59289791 | None:intergenic | 50.0% |
| AAGAAGGCCTTGAGCTGGCT+TGG | - | chr5.2:59289148-59289167 | None:intergenic | 55.0% | |
| CGTCAAAGAAGGCCTTGAGC+TGG | - | chr5.2:59289153-59289172 | None:intergenic | 55.0% | |
| GCTGGAACTTTCGCTGGAGA+TGG | + | chr5.2:59289736-59289755 | MS.gene44880:CDS | 55.0% | |
| TGCCTGTGTCCATGTCGTGT+CGG | + | chr5.2:59289489-59289508 | MS.gene44880:intron | 55.0% | |
| ! | GCTTCAGCAGGCCTTTTACC+AGG | + | chr5.2:59289783-59289802 | MS.gene44880:CDS | 55.0% |
| ! | TATGGCGCTGGAACTTTCGC+TGG | + | chr5.2:59289730-59289749 | MS.gene44880:CDS | 55.0% |
| ACCCGACACGACATGGACAC+AGG | - | chr5.2:59289494-59289513 | None:intergenic | 60.0% | |
| CACGAACACCCGACACGACA+TGG | - | chr5.2:59289501-59289520 | None:intergenic | 60.0% | |
| GCCTGTGTCCATGTCGTGTC+GGG | + | chr5.2:59289490-59289509 | MS.gene44880:intron | 60.0% | |
| GTCGTGTCGGGTGTTCGTGT+TGG | + | chr5.2:59289502-59289521 | MS.gene44880:intron | 60.0% | |
| TGGATTTAACGGGGGTGGCC+AGG | + | chr5.2:59289237-59289256 | MS.gene44880:CDS | 60.0% | |
| GCACTCGCAGGCAAACCTGC+TGG | + | chr5.2:59289199-59289218 | MS.gene44880:CDS | 65.0% | |
| TGGGCGTCTCAAGCACTCGC+AGG | + | chr5.2:59289187-59289206 | MS.gene44880:CDS | 65.0% | |
| GGAGGCTCGGCTTATGGCGC+TGG | + | chr5.2:59289718-59289737 | MS.gene44880:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 59288621 | 59289846 | 59288621 | ID=MS.gene44880 |
| chr5.2 | mRNA | 59288621 | 59289846 | 59288621 | ID=MS.gene44880.t1;Parent=MS.gene44880 |
| chr5.2 | exon | 59288621 | 59288646 | 59288621 | ID=MS.gene44880.t1.exon1;Parent=MS.gene44880.t1 |
| chr5.2 | CDS | 59288621 | 59288646 | 59288621 | ID=cds.MS.gene44880.t1;Parent=MS.gene44880.t1 |
| chr5.2 | exon | 59288784 | 59288877 | 59288784 | ID=MS.gene44880.t1.exon2;Parent=MS.gene44880.t1 |
| chr5.2 | CDS | 59288784 | 59288877 | 59288784 | ID=cds.MS.gene44880.t1;Parent=MS.gene44880.t1 |
| chr5.2 | exon | 59289004 | 59289269 | 59289004 | ID=MS.gene44880.t1.exon3;Parent=MS.gene44880.t1 |
| chr5.2 | CDS | 59289004 | 59289269 | 59289004 | ID=cds.MS.gene44880.t1;Parent=MS.gene44880.t1 |
| chr5.2 | exon | 59289621 | 59289846 | 59289621 | ID=MS.gene44880.t1.exon4;Parent=MS.gene44880.t1 |
| chr5.2 | CDS | 59289621 | 59289846 | 59289621 | ID=cds.MS.gene44880.t1;Parent=MS.gene44880.t1 |
| Gene Sequence |
| Protein sequence |
