AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene44939


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44939.t1 MTR_1g080600 91.304 46 4 0 84 129 689 734 2.30e-21 90.1
MS.gene44939.t1 MTR_7g115430 76.744 43 10 0 87 129 693 735 1.06e-14 70.9
MS.gene44939.t1 MTR_1g069290 68.889 45 14 0 85 129 193 237 1.59e-13 67.4
MS.gene44939.t1 MTR_4g125690 72.093 43 12 0 87 129 693 735 4.53e-13 66.2
MS.gene44939.t1 MTR_1g070280 66.667 42 14 0 88 129 505 546 5.62e-12 63.2
MS.gene44939.t1 MTR_1g070280 66.667 42 14 0 88 129 695 736 5.87e-12 63.2
MS.gene44939.t1 MTR_1g070280 66.667 42 14 0 88 129 695 736 5.87e-12 63.2
MS.gene44939.t1 MTR_1g070280 66.667 42 14 0 88 129 695 736 5.97e-12 63.2
MS.gene44939.t1 MTR_1g070400 64.286 42 15 0 88 129 691 732 2.58e-11 61.2
MS.gene44939.t1 MTR_2g062660 67.442 43 14 0 87 129 675 717 2.71e-11 61.2
MS.gene44939.t1 MTR_7g099290 60.000 45 18 0 85 129 692 736 5.09e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44939.t1 AT1G08730 76.744 43 10 0 87 129 701 743 1.38e-14 70.9
MS.gene44939.t1 AT1G08730 76.744 43 10 0 87 129 693 735 1.42e-14 70.9
MS.gene44939.t1 AT1G54560 63.462 52 19 0 88 139 697 748 7.53e-13 65.9
MS.gene44939.t1 AT1G54560 63.462 52 19 0 88 139 694 745 7.60e-13 65.9
MS.gene44939.t1 AT2G31900 69.767 43 13 0 87 129 577 619 9.44e-13 65.5
MS.gene44939.t1 AT2G31900 69.767 43 13 0 87 129 434 476 9.64e-13 65.5
MS.gene44939.t1 AT2G31900 69.767 43 13 0 87 129 692 734 9.68e-13 65.5
MS.gene44939.t1 AT2G31900 69.767 43 13 0 87 129 692 734 9.68e-13 65.5
MS.gene44939.t1 AT2G31900 69.767 43 13 0 87 129 692 734 9.77e-13 65.5
MS.gene44939.t1 AT5G20490 67.442 43 14 0 87 129 627 669 1.91e-12 64.7
MS.gene44939.t1 AT5G20490 67.442 43 14 0 87 129 692 734 1.95e-12 64.7
MS.gene44939.t1 AT5G20490 67.442 43 14 0 87 129 693 735 1.95e-12 64.7
MS.gene44939.t1 AT1G04160 65.116 43 15 0 87 129 693 735 3.06e-12 63.9
MS.gene44939.t1 AT2G33240 59.259 54 19 1 79 129 171 224 3.22e-12 63.9
MS.gene44939.t1 AT4G28710 71.795 39 11 0 91 129 703 741 3.43e-12 63.9
MS.gene44939.t1 AT1G04160 65.116 43 15 0 87 129 693 735 3.44e-12 63.9
MS.gene44939.t1 AT2G33240 59.259 54 19 1 79 129 698 751 3.81e-12 63.5
MS.gene44939.t1 AT2G33240 59.259 54 19 1 79 129 698 751 3.85e-12 63.5
MS.gene44939.t1 AT2G33240 59.259 54 19 1 79 129 698 751 3.85e-12 63.5
MS.gene44939.t1 AT2G33240 59.259 54 19 1 79 129 698 751 3.89e-12 63.5
MS.gene44939.t1 AT2G33240 59.259 54 19 1 79 129 680 733 4.00e-12 63.5
MS.gene44939.t1 AT2G33240 59.259 54 19 1 79 129 703 756 4.00e-12 63.5
MS.gene44939.t1 AT2G33240 59.259 54 19 1 79 129 698 751 4.04e-12 63.5
MS.gene44939.t1 AT1G04600 60.870 46 18 0 84 129 689 734 4.07e-12 63.5
MS.gene44939.t1 AT2G20290 62.222 45 17 0 85 129 700 744 8.78e-12 62.8
MS.gene44939.t1 AT2G20290 62.222 45 17 0 85 129 689 733 8.86e-12 62.8
MS.gene44939.t1 AT2G20290 62.222 45 17 0 85 129 689 733 9.03e-12 62.8
MS.gene44939.t1 AT2G20290 62.222 45 17 0 85 129 689 733 9.20e-12 62.8
MS.gene44939.t1 AT5G43900 69.231 39 12 0 91 129 753 791 9.60e-12 62.4
MS.gene44939.t1 AT5G43900 69.231 39 12 0 91 129 756 794 9.70e-12 62.4
MS.gene44939.t1 AT5G43900 69.231 39 12 0 91 129 696 734 1.04e-11 62.4
MS.gene44939.t1 AT3G58160 74.359 39 10 0 91 129 694 732 1.57e-11 62.0
MS.gene44939.t1 AT3G58160 74.359 39 10 0 91 129 694 732 1.60e-11 62.0
MS.gene44939.t1 AT3G58160 74.359 39 10 0 91 129 694 732 1.60e-11 62.0
MS.gene44939.t1 AT3G58160 74.359 39 10 0 91 129 694 732 1.64e-11 62.0
MS.gene44939.t1 AT3G58160 74.359 39 10 0 91 129 694 732 1.64e-11 62.0
MS.gene44939.t1 AT1G17580 65.116 43 15 0 87 129 690 732 1.75e-11 61.6

Find 40 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGCTTCCATCATTATTC+AGG 0.231507 8.1:-28146921 MS.gene44939:intron
CTGGAAAAGACGGGGCTTAA+AGG 0.242370 8.1:-28147497 MS.gene44939:CDS
GAATGCTTGCCAAAAGATTC+TGG 0.282653 8.1:-28147516 MS.gene44939:CDS
TGGAGTACCTGCTTCAGTTT+GGG 0.319129 8.1:-28150374 MS.gene44939:CDS
TGCTTCAGTTTGGGAGAAAA+AGG 0.328983 8.1:-28150365 MS.gene44939:CDS
CTGAATAATGATGGAAGCTT+TGG 0.339576 8.1:+28146922 None:intergenic
CTCGCAAGGAATTCAGATTT+AGG 0.340667 8.1:-28146952 MS.gene44939:CDS
TTGGAGTACCTGCTTCAGTT+TGG 0.354434 8.1:-28150375 MS.gene44939:CDS
GCAGCGGAGCAGCTGGCCTT+TGG 0.357491 8.1:-28150394 MS.gene44939:CDS
TGCATGTGCAGCGGAGCAGC+TGG 0.358117 8.1:-28150401 MS.gene44939:CDS
AGACGGGGCTTAAAGGATAT+CGG 0.406822 8.1:-28147490 MS.gene44939:CDS
TGGTATCAACCGTTGTCGAC+TGG 0.437188 8.1:-28146616 MS.gene44939:CDS
TGATGAGTGGTGGGAGCAAC+TGG 0.464023 8.1:-28146636 MS.gene44939:CDS
TAGAACCATAGCAGCTTCAC+TGG 0.474605 8.1:+28148887 None:intergenic
GATCACCTAAAATATATTGT+TGG 0.475365 8.1:+28148697 None:intergenic
CTCTGCAGCTTGATGAGTGG+TGG 0.478210 8.1:-28146646 MS.gene44939:intron
GAATAGTATTACAGTTCCAT+TGG 0.480325 8.1:+28148719 None:intergenic
GACCAAAACCTGAATAATGA+TGG 0.480686 8.1:+28146913 None:intergenic
GACGGGGCTTAAAGGATATC+GGG 0.489335 8.1:-28147489 MS.gene44939:intron
GCAGGTGAAAATGGAGAAGG+AGG 0.496622 8.1:-28150440 None:intergenic
AGATGCCAGTGAAGCTGCTA+TGG 0.504712 8.1:-28148892 MS.gene44939:CDS
ATGTTTATGACAGTGGATGC+AGG 0.512594 8.1:-28148917 MS.gene44939:intron
GAATTCCTTGCGAGCAGCAA+TGG 0.514415 8.1:+28146961 None:intergenic
GGTATCAACCGTTGTCGACT+GGG 0.515288 8.1:-28146615 MS.gene44939:CDS
CAAAAGATTCTGGAAAAGAC+GGG 0.518195 8.1:-28147506 MS.gene44939:CDS
AAGGGCCATTGCTGCTCGCA+AGG 0.528192 8.1:-28146966 MS.gene44939:CDS
CCAAAAGATTCTGGAAAAGA+CGG 0.530888 8.1:-28147507 MS.gene44939:CDS
TCTGCAGCTTGATGAGTGGT+GGG 0.545224 8.1:-28146645 MS.gene44939:intron
ACAAAGGTATTCTTGAGAGC+AGG 0.550274 8.1:-28147319 MS.gene44939:CDS
TTCCTCTGCAGCTTGATGAG+TGG 0.578672 8.1:-28146649 MS.gene44939:intron
ATTCTTGAGAGCAGGTCAGA+TGG 0.591131 8.1:-28147311 MS.gene44939:CDS
GAAGGAGGGTTCTGTTGATG+TGG 0.596962 8.1:-28150425 MS.gene44939:CDS
TGTTTATGACAGTGGATGCA+GGG 0.601633 8.1:-28148916 MS.gene44939:intron
TTTGCAGGTGAAAATGGAGA+AGG 0.616102 8.1:-28150443 None:intergenic
CACTGTCACCCAGTCGACAA+CGG 0.634566 8.1:+28146607 None:intergenic
TGATGTGGCTGCATGTGCAG+CGG 0.640757 8.1:-28150410 MS.gene44939:CDS
AACTGAAGCAGGTACTCCAA+AGG 0.642312 8.1:+28150378 None:intergenic
CAGGTGAAAATGGAGAAGGA+GGG 0.661027 8.1:-28150439 None:intergenic
AAAAGATTCTGGAAAAGACG+GGG 0.698587 8.1:-28147505 MS.gene44939:CDS
GCTGAACTAGATGCTCAGAG+AGG 0.728858 8.1:-28147289 MS.gene44939:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTTAATTATGTTTTGA+TGG - chr8.1:28146869-28146888 MS.gene44939:intron 10.0%
!! TAAATTAAATATGTAGAGAA+GGG + chr8.1:28149901-28149920 None:intergenic 15.0%
!! TATTACACTAATTTAAACAA+TGG - chr8.1:28147644-28147663 MS.gene44939:intron 15.0%
!! TTAAATTAAATATGTAGAGA+AGG + chr8.1:28149902-28149921 None:intergenic 15.0%
!! TTAAGGTATACAAAAAAAAT+TGG - chr8.1:28148420-28148439 MS.gene44939:intron 15.0%
!!! AATTAAATTATTCATTTTGC+CGG + chr8.1:28146860-28146879 None:intergenic 15.0%
!!! ATTTTGTATGAAGTATATAT+AGG + chr8.1:28148701-28148720 None:intergenic 15.0%
!! AATTTAAGCCAACAATTTAA+TGG - chr8.1:28147008-28147027 MS.gene44939:intron 20.0%
!! AGAAAAATCAGAAAATAGTT+GGG + chr8.1:28147370-28147389 None:intergenic 20.0%
!! ATTTAGGGACAATTATATAA+AGG - chr8.1:28146927-28146946 MS.gene44939:CDS 20.0%
!! CTAATTTAGATTATCTACTA+TGG - chr8.1:28150157-28150176 MS.gene44939:intron 20.0%
!! GTATTGAAATATTGTAGTTA+AGG - chr8.1:28149196-28149215 MS.gene44939:intron 20.0%
!! TATCAATCTTATAACACTAA+TGG + chr8.1:28150185-28150204 None:intergenic 20.0%
!! TGTGGTTATTAAAAATTGAA+AGG - chr8.1:28147724-28147743 MS.gene44939:intron 20.0%
!! TTGATTAAAGCTTAAGAATA+AGG - chr8.1:28147518-28147537 MS.gene44939:CDS 20.0%
!! TTTATATAATTGTCCCTAAA+TGG + chr8.1:28146928-28146947 None:intergenic 20.0%
!! TTTGTTAGGATATAGAATAA+TGG - chr8.1:28149147-28149166 MS.gene44939:intron 20.0%
!!! AATTTTTCAGCATTGTTTTA+AGG + chr8.1:28150210-28150229 None:intergenic 20.0%
!!! ACAAAAAAAATTGGTTCATT+AGG - chr8.1:28148429-28148448 MS.gene44939:intron 20.0%
!!! ATCTTGTTTAATTTTTGTGT+GGG - chr8.1:28146712-28146731 MS.gene44939:intron 20.0%
!!! CTATTCCAACAATATATTTT+AGG - chr8.1:28148340-28148359 MS.gene44939:intron 20.0%
!!! TATATGTTTTGTTTTAGATG+AGG - chr8.1:28147402-28147421 MS.gene44939:intron 20.0%
!!! TATCTTGTTTAATTTTTGTG+TGG - chr8.1:28146711-28146730 MS.gene44939:intron 20.0%
!!! TATGTCATAATTTGTTTGAT+TGG - chr8.1:28149675-28149694 MS.gene44939:intron 20.0%
!!! TGATATTTTGGACTAAATTT+GGG - chr8.1:28149453-28149472 MS.gene44939:intron 20.0%
!!! TTCTTTTGATTCATTTAGTA+GGG + chr8.1:28147447-28147466 None:intergenic 20.0%
!!! TTGAGTTAATTTTCAAACAA+TGG - chr8.1:28147544-28147563 MS.gene44939:intron 20.0%
!!! TTGATATTTTGGACTAAATT+TGG - chr8.1:28149452-28149471 MS.gene44939:intron 20.0%
!!! TTTCTTTTGATTCATTTAGT+AGG + chr8.1:28147448-28147467 None:intergenic 20.0%
! AAAACAATGCTGAAAAATTC+AGG - chr8.1:28150211-28150230 MS.gene44939:intron 25.0%
! AATAGCCTAATTCATTTCTT+AGG - chr8.1:28149779-28149798 MS.gene44939:intron 25.0%
! ACAATATTGAGAAAACATCA+TGG + chr8.1:28148516-28148535 None:intergenic 25.0%
! ACAATTATATAAAGGCCATT+TGG - chr8.1:28146935-28146954 MS.gene44939:CDS 25.0%
! ACCAATGTTAGATCTAAATT+AGG + chr8.1:28147766-28147785 None:intergenic 25.0%
! ACCATGTCTCAATATTAAAA+TGG + chr8.1:28149345-28149364 None:intergenic 25.0%
! ACCTAATTTAGATCTAACAT+TGG - chr8.1:28147762-28147781 MS.gene44939:intron 25.0%
! ATATCAAGCCTAATTTCATA+AGG + chr8.1:28146969-28146988 None:intergenic 25.0%
! ATATTGTTGTGTTTATTCTC+AGG - chr8.1:28148529-28148548 MS.gene44939:intron 25.0%
! ATTCTTCATCAGTATTTGTT+AGG - chr8.1:28149133-28149152 MS.gene44939:intron 25.0%
! CAATTATATAAAGGCCATTT+GGG - chr8.1:28146936-28146955 MS.gene44939:CDS 25.0%
! GAGAAAAATCAGAAAATAGT+TGG + chr8.1:28147371-28147390 None:intergenic 25.0%
! GATCACCTAAAATATATTGT+TGG + chr8.1:28148348-28148367 None:intergenic 25.0%
! GCAAAAACTGTAATATTTGA+AGG + chr8.1:28148184-28148203 None:intergenic 25.0%
! TACTTTGCAAACAACTTTAA+GGG - chr8.1:28150058-28150077 MS.gene44939:intron 25.0%
! TCTATCCTAAGAAATGAATT+AGG + chr8.1:28149787-28149806 None:intergenic 25.0%
! TGAAATTAGGCTTGATATTA+TGG - chr8.1:28146971-28146990 MS.gene44939:intron 25.0%
! TTAATCATTCTTGTGTAACT+GGG - chr8.1:28149297-28149316 MS.gene44939:intron 25.0%
! TTACTTTGCAAACAACTTTA+AGG - chr8.1:28150057-28150076 MS.gene44939:intron 25.0%
! TTAGAGAAACTATCTTTAAC+AGG - chr8.1:28148598-28148617 MS.gene44939:intron 25.0%
! TTTAATCATTCTTGTGTAAC+TGG - chr8.1:28149296-28149315 MS.gene44939:intron 25.0%
! TTTGATTATGGTAAATCAAG+TGG - chr8.1:28149075-28149094 MS.gene44939:intron 25.0%
!! AACTAGCACATATTTTCTTA+AGG - chr8.1:28148403-28148422 MS.gene44939:intron 25.0%
!! GATCTTTTGATCAATAATTC+TGG - chr8.1:28147114-28147133 MS.gene44939:intron 25.0%
!! TGACTGACTTTATAAACTAT+AGG + chr8.1:28146832-28146851 None:intergenic 25.0%
!! TTAAGCTTTAATCAACAATC+AGG + chr8.1:28147513-28147532 None:intergenic 25.0%
!!! TCCATTTTAATATTGAGACA+TGG - chr8.1:28149341-28149360 MS.gene44939:intron 25.0%
AACTCTATGAGAAAATGAGA+AGG - chr8.1:28149960-28149979 MS.gene44939:intron 30.0%
ACTCTATGAGAAAATGAGAA+GGG - chr8.1:28149961-28149980 MS.gene44939:intron 30.0%
ATGAAAGGAGTAAACAATGT+TGG + chr8.1:28149012-28149031 None:intergenic 30.0%
ATGCCATGATATTATAAGGT+AGG + chr8.1:28147702-28147721 None:intergenic 30.0%
ATGCCTACCTTATAATATCA+TGG - chr8.1:28147696-28147715 MS.gene44939:intron 30.0%
ATGTGTTATAGTTGTTGCTA+AGG + chr8.1:28149654-28149673 None:intergenic 30.0%
CAAACCATCCATTAAATTGT+TGG + chr8.1:28147019-28147038 None:intergenic 30.0%
CAACATGCCATGATATTATA+AGG + chr8.1:28147706-28147725 None:intergenic 30.0%
CAATTTGATATGCATTCTCT+TGG - chr8.1:28150309-28150328 MS.gene44939:intron 30.0%
CATCGATCGAAAAACATTAA+TGG - chr8.1:28147252-28147271 MS.gene44939:intron 30.0%
GAACATGACCTTATGAAATT+AGG - chr8.1:28146958-28146977 MS.gene44939:CDS 30.0%
GAATAGTATTACAGTTCCAT+TGG + chr8.1:28148326-28148345 None:intergenic 30.0%
GCAAAAAATGAACTTGAATG+TGG - chr8.1:28148056-28148075 MS.gene44939:intron 30.0%
GGAGCTTAATATTAGAACTA+TGG + chr8.1:28149626-28149645 None:intergenic 30.0%
GGGAATTAAACAAGCAAAAA+AGG - chr8.1:28148468-28148487 MS.gene44939:intron 30.0%
GTGTAATTGGTACTTGTATA+AGG + chr8.1:28148839-28148858 None:intergenic 30.0%
GTTGTAGATTGGAAAAACAA+AGG - chr8.1:28149707-28149726 MS.gene44939:intron 30.0%
TAAGCCAACAATTTAATGGA+TGG - chr8.1:28147012-28147031 MS.gene44939:intron 30.0%
TAAGGTGCATATATGATCTT+AGG + chr8.1:28148821-28148840 None:intergenic 30.0%
TATAATATCATGGCATGTTG+TGG - chr8.1:28147706-28147725 MS.gene44939:intron 30.0%
TATGCTAACCAGAAAAACTA+CGG + chr8.1:28147964-28147983 None:intergenic 30.0%
TCATAGCATTTAGAGACAAA+TGG - chr8.1:28149028-28149047 MS.gene44939:intron 30.0%
TCTCTTCATCAGTATTTGTT+AGG - chr8.1:28149103-28149122 MS.gene44939:intron 30.0%
TTGTCTCTAAATGCTATGAA+AGG + chr8.1:28149027-28149046 None:intergenic 30.0%
! GTTTTTCCAATCTACAACAT+TGG + chr8.1:28149705-28149724 None:intergenic 30.0%
!! ATTAGGCTTTGAAAAGTTAC+AGG - chr8.1:28148446-28148465 MS.gene44939:intron 30.0%
!! CATTAATGTTTTTCGATCGA+TGG + chr8.1:28147254-28147273 None:intergenic 30.0%
!! CATTGCTTTGTTTGTTACAA+TGG - chr8.1:28146800-28146819 MS.gene44939:intron 30.0%
!! CTTGATTCTAGAACCATTTA+GGG - chr8.1:28146912-28146931 MS.gene44939:intron 30.0%
!! TTAGGCTTTGAAAAGTTACA+GGG - chr8.1:28148447-28148466 MS.gene44939:intron 30.0%
!! TTCCATCATTATTCAGGTTT+TGG - chr8.1:28150127-28150146 MS.gene44939:intron 30.0%
!!! ATACACAACATGCTTTTTCT+AGG - chr8.1:28149923-28149942 MS.gene44939:intron 30.0%
AAGAAACTGCACCAGAAATA+TGG + chr8.1:28148733-28148752 None:intergenic 35.0%
AATGGATAAATGCAGTGACA+TGG + chr8.1:28149327-28149346 None:intergenic 35.0%
ACATACGCAGTTACAAAACT+AGG - chr8.1:28150003-28150022 MS.gene44939:intron 35.0%
ACATCATGGCCATTATGAAT+CGG + chr8.1:28148502-28148521 None:intergenic 35.0%
AGATCTAACATTGGTGTAGA+TGG - chr8.1:28147771-28147790 MS.gene44939:intron 35.0%
AGCTTCATGTCATAGTTCAA+TGG + chr8.1:28148881-28148900 None:intergenic 35.0%
ATATGATCTTAGGCACTTCA+CGG + chr8.1:28148811-28148830 None:intergenic 35.0%
ATCTCCAAGTACCATATTTC+TGG - chr8.1:28148719-28148738 MS.gene44939:CDS 35.0%
ATGTGCAATGGTGTATTTGT+TGG + chr8.1:28147064-28147083 None:intergenic 35.0%
ATGTTGGCACACCAAAATTA+AGG + chr8.1:28148996-28149015 None:intergenic 35.0%
ATTGTGAACACTGGTGTAAT+TGG + chr8.1:28148852-28148871 None:intergenic 35.0%
CAAAGCTTCCATCATTATTC+AGG - chr8.1:28150121-28150140 MS.gene44939:intron 35.0%
CAAATTGTTGGAATGTGCAA+TGG + chr8.1:28147076-28147095 None:intergenic 35.0%
CACCAAAATTAAGGTCAGAT+TGG + chr8.1:28148987-28149006 None:intergenic 35.0%
CATGTATACTAGAGTTGACA+TGG - chr8.1:28147479-28147498 MS.gene44939:intron 35.0%
CGAAGTAAACTGTTGAGTAT+AGG - chr8.1:28147930-28147949 MS.gene44939:intron 35.0%
CTAAACTAGACCTAAACCTT+AGG + chr8.1:28148582-28148601 None:intergenic 35.0%
GACCAAAACCTGAATAATGA+TGG + chr8.1:28150132-28150151 None:intergenic 35.0%
GAGACACACTGTTCTAATTA+AGG + chr8.1:28149834-28149853 None:intergenic 35.0%
GAGGAACTTATAGCAAGATT+TGG - chr8.1:28147421-28147440 MS.gene44939:intron 35.0%
GCTTCATGTCATAGTTCAAT+GGG + chr8.1:28148880-28148899 None:intergenic 35.0%
TAACCTTGAGTTTCTCAACT+TGG + chr8.1:28147674-28147693 None:intergenic 35.0%
TATAAAGTCAGTCACATCTC+CGG - chr8.1:28146838-28146857 MS.gene44939:intron 35.0%
TCTTACTGACCACAAATTGT+TGG + chr8.1:28147088-28147107 None:intergenic 35.0%
TGATTCTCCCTAAATTTGTG+TGG - chr8.1:28148781-28148800 MS.gene44939:intron 35.0%
TTAAGGCCTCAATTGAGTTA+AGG - chr8.1:28149213-28149232 MS.gene44939:intron 35.0%
TTGCACATTCCAACAATTTG+TGG - chr8.1:28147076-28147095 MS.gene44939:intron 35.0%
TTGTGCAATGTTTATGACAG+TGG - chr8.1:28148118-28148137 MS.gene44939:intron 35.0%
TTTGTGGTCAGTAAGATAAC+TGG - chr8.1:28147092-28147111 MS.gene44939:intron 35.0%
! AAAAGATTCTGGAAAAGACG+GGG - chr8.1:28149537-28149556 MS.gene44939:intron 35.0%
! AGCTTTAATCAACAATCAGG+CGG + chr8.1:28147510-28147529 None:intergenic 35.0%
! CAAAAGATTCTGGAAAAGAC+GGG - chr8.1:28149536-28149555 MS.gene44939:intron 35.0%
! CCAAAAGATTCTGGAAAAGA+CGG - chr8.1:28149535-28149554 MS.gene44939:intron 35.0%
! CTGAATAATGATGGAAGCTT+TGG + chr8.1:28150123-28150142 None:intergenic 35.0%
! GTATTTGTTGGAATGTGCAA+TGG + chr8.1:28147052-28147071 None:intergenic 35.0%
! TGCCAATCTGACCTTAATTT+TGG - chr8.1:28148982-28149001 MS.gene44939:intron 35.0%
! TTGTCGAGTTATTTCACCTA+TGG - chr8.1:28149488-28149507 MS.gene44939:intron 35.0%
! TTTAAAGTGCTAGCAGGAAA+TGG + chr8.1:28148936-28148955 None:intergenic 35.0%
! TTTCTGGTGCAGTTTCTTTA+TGG - chr8.1:28148735-28148754 MS.gene44939:CDS 35.0%
!! AATGTTTTTCGATCGATGGT+GGG + chr8.1:28147250-28147269 None:intergenic 35.0%
!! GCATAACTACCGATTCATAA+TGG - chr8.1:28148490-28148509 MS.gene44939:intron 35.0%
!! GCTTGATTCTAGAACCATTT+AGG - chr8.1:28146911-28146930 MS.gene44939:intron 35.0%
!! GGACGTAAGCTTTGATATTT+TGG - chr8.1:28149441-28149460 MS.gene44939:intron 35.0%
!! TAATGTTTTTCGATCGATGG+TGG + chr8.1:28147251-28147270 None:intergenic 35.0%
!! TAGGCTTTGAAAAGTTACAG+GGG - chr8.1:28148448-28148467 MS.gene44939:intron 35.0%
!! TGCTTTGTTTGTTACAATGG+TGG - chr8.1:28146803-28146822 MS.gene44939:intron 35.0%
!!! TGATGTCCTTTTTTCGTACT+TGG - chr8.1:28148300-28148319 MS.gene44939:intron 35.0%
!!! TTCTGCTGTTGTTTTGCTTA+TGG - chr8.1:28147308-28147327 MS.gene44939:CDS 35.0%
AACAGCAGAAAAGTGGCATT+AGG + chr8.1:28147298-28147317 None:intergenic 40.0%
AAGGACGAATTACCAACTTC+TGG + chr8.1:28147205-28147224 None:intergenic 40.0%
AATACAGAACATGACCGCAA+GGG + chr8.1:28148263-28148282 None:intergenic 40.0%
ACGCAGTTACAAAACTAGGA+AGG - chr8.1:28150007-28150026 MS.gene44939:intron 40.0%
ATGGTTCACGTCATTGACAT+AGG - chr8.1:28149411-28149430 MS.gene44939:intron 40.0%
ATGTTTATGACAGTGGATGC+AGG - chr8.1:28148125-28148144 MS.gene44939:intron 40.0%
CAGGTTGCACTAGTATTTGA+TGG - chr8.1:28148548-28148567 MS.gene44939:intron 40.0%
CATAAGGTCATGTTCCCAAA+TGG + chr8.1:28146953-28146972 None:intergenic 40.0%
CATTGGCCAAGTACGAAAAA+AGG + chr8.1:28148309-28148328 None:intergenic 40.0%
CCAAACAATGAAAGCAGAAG+AGG + chr8.1:28148913-28148932 None:intergenic 40.0%
CCAGAAAAACTACGGCATAT+TGG + chr8.1:28147956-28147975 None:intergenic 40.0%
CCTCTTCTGCTTTCATTGTT+TGG - chr8.1:28148910-28148929 MS.gene44939:intron 40.0%
CTATGAGAAAATGAGAAGGG+AGG - chr8.1:28149964-28149983 MS.gene44939:intron 40.0%
CTCGCAAGGAATTCAGATTT+AGG - chr8.1:28150090-28150109 MS.gene44939:intron 40.0%
GAATGCTTGCCAAAAGATTC+TGG - chr8.1:28149526-28149545 MS.gene44939:intron 40.0%
GCAAAACAACAGCAGAAAAG+TGG + chr8.1:28147305-28147324 None:intergenic 40.0%
GGGAGAAAAAGGTCAATTAC+AGG - chr8.1:28146688-28146707 MS.gene44939:intron 40.0%
GGGAGAATGATTGTGTAATG+AGG + chr8.1:28149881-28149900 None:intergenic 40.0%
GTATCAAAGCAGAACCTTCA+TGG - chr8.1:28149392-28149411 MS.gene44939:intron 40.0%
TAATCAAACCTTGAGCAGCA+AGG + chr8.1:28149063-28149082 None:intergenic 40.0%
TCATGCAACGTATGTAGATG+AGG - chr8.1:28148366-28148385 MS.gene44939:intron 40.0%
TGCACCAGAAATATGGTACT+TGG + chr8.1:28148726-28148745 None:intergenic 40.0%
TGCTGCTCAAGGTTTGATTA+TGG - chr8.1:28149063-28149082 MS.gene44939:intron 40.0%
TGCTTCAGTTTGGGAGAAAA+AGG - chr8.1:28146677-28146696 MS.gene44939:intron 40.0%
TGTTTATGACAGTGGATGCA+GGG - chr8.1:28148126-28148145 MS.gene44939:intron 40.0%
TTGAGGCCTTAACTCAATTG+AGG + chr8.1:28149222-28149241 None:intergenic 40.0%
TTGAGTTAAGGCCTCAATTG+CGG - chr8.1:28149225-28149244 MS.gene44939:intron 40.0%
! ATAGTTGTTGCTAAGGTGTC+AGG + chr8.1:28149647-28149666 None:intergenic 40.0%
! CCAATATGCCGTAGTTTTTC+TGG - chr8.1:28147953-28147972 MS.gene44939:intron 40.0%
! CCGTCTTTTCCAGAATCTTT+TGG + chr8.1:28149538-28149557 None:intergenic 40.0%
! CTTTTCATTACAGCTGCCAT+AGG + chr8.1:28149507-28149526 None:intergenic 40.0%
! GTACCAAGTTGAGAAACTCA+AGG - chr8.1:28147668-28147687 MS.gene44939:intron 40.0%
! TTTGATGGTATCCAGACCTA+AGG - chr8.1:28148563-28148582 MS.gene44939:intron 40.0%
! TTTTTCTCCCAAACTGAAGC+AGG + chr8.1:28146678-28146697 None:intergenic 40.0%
!! ACAAAGGTATTCTTGAGAGC+AGG - chr8.1:28149723-28149742 MS.gene44939:intron 40.0%
!! CCTGCTAGCACTTTAAAACA+AGG - chr8.1:28148939-28148958 MS.gene44939:intron 40.0%
!!! CCTTGTTTTAAAGTGCTAGC+AGG + chr8.1:28148942-28148961 None:intergenic 40.0%
!!! CTTTTTTCGTACTTGGCCAA+TGG - chr8.1:28148307-28148326 MS.gene44939:intron 40.0%
AACTGAAGCAGGTACTCCAA+AGG + chr8.1:28146667-28146686 None:intergenic 45.0%
AGAACAGTGTGTCTCAGAGA+AGG - chr8.1:28149839-28149858 MS.gene44939:intron 45.0%
AGACGGGGCTTAAAGGATAT+CGG - chr8.1:28149552-28149571 MS.gene44939:intron 45.0%
ATCAAAGCTTACGTCCTCCT+GGG + chr8.1:28149437-28149456 None:intergenic 45.0%
ATTCTCTACCTTGCTGCTCA+AGG - chr8.1:28149052-28149071 MS.gene44939:intron 45.0%
ATTCTTGAGAGCAGGTCAGA+TGG - chr8.1:28149731-28149750 MS.gene44939:intron 45.0%
CAATACAGAACATGACCGCA+AGG + chr8.1:28148264-28148283 None:intergenic 45.0%
CTAGACCTAAACCTTAGGTC+TGG + chr8.1:28148577-28148596 None:intergenic 45.0%
GGCTGTCCAATGTTGTAGAT+TGG - chr8.1:28149696-28149715 MS.gene44939:intron 45.0%
GGTATCCAGACCTAAGGTTT+AGG - chr8.1:28148569-28148588 MS.gene44939:intron 45.0%
GTCAATGACGTGAACCATGA+AGG + chr8.1:28149409-28149428 None:intergenic 45.0%
GTGGGTCTTCGCTAAAATGA+TGG + chr8.1:28147171-28147190 None:intergenic 45.0%
TAGAACCATAGCAGCTTCAC+TGG + chr8.1:28148158-28148177 None:intergenic 45.0%
TATCAAAGCTTACGTCCTCC+TGG + chr8.1:28149438-28149457 None:intergenic 45.0%
TCTACATGTTGTCACCCTTG+CGG - chr8.1:28148246-28148265 MS.gene44939:intron 45.0%
TGGGCATGAATTGTGAACAC+TGG + chr8.1:28148861-28148880 None:intergenic 45.0%
! ACGGCTAGCCACACAAATTT+AGG + chr8.1:28148792-28148811 None:intergenic 45.0%
! CGGCTAGCCACACAAATTTA+GGG + chr8.1:28148791-28148810 None:intergenic 45.0%
! TGGAGTACCTGCTTCAGTTT+GGG - chr8.1:28146668-28146687 MS.gene44939:intron 45.0%
! TTGGAGTACCTGCTTCAGTT+TGG - chr8.1:28146667-28146686 MS.gene44939:intron 45.0%
!! CACAAGAGCACTATCTTGGA+AGG + chr8.1:28147224-28147243 None:intergenic 45.0%
!! CATTTTAGCGAAGACCCACA+AGG - chr8.1:28147172-28147191 MS.gene44939:intron 45.0%
!! GAGACACAAGAGCACTATCT+TGG + chr8.1:28147228-28147247 None:intergenic 45.0%
AGATGCCAGTGAAGCTGCTA+TGG - chr8.1:28148150-28148169 MS.gene44939:intron 50.0%
ATCAGCCATGACCGCAATTG+AGG + chr8.1:28149239-28149258 None:intergenic 50.0%
CGTATGTTCTTTGCGAGCAG+CGG + chr8.1:28149990-28150009 None:intergenic 50.0%
CTGGAAAAGACGGGGCTTAA+AGG - chr8.1:28149545-28149564 MS.gene44939:intron 50.0%
GAAGGAGGGTTCTGTTGATG+TGG - chr8.1:28146617-28146636 MS.gene44939:CDS 50.0%
GAATTCCTTGCGAGCAGCAA+TGG + chr8.1:28150084-28150103 None:intergenic 50.0%
GACGGGGCTTAAAGGATATC+GGG - chr8.1:28149553-28149572 MS.gene44939:intron 50.0%
GCTGAACTAGATGCTCAGAG+AGG - chr8.1:28149753-28149772 MS.gene44939:intron 50.0%
TAAGGCCTCAATTGCGGTCA+TGG - chr8.1:28149231-28149250 MS.gene44939:intron 50.0%
TCAGAGAAGGCAGATGCAGT+AGG - chr8.1:28149852-28149871 MS.gene44939:intron 50.0%
TCTGCAGCTTGATGAGTGGT+GGG - chr8.1:28150397-28150416 MS.gene44939:CDS 50.0%
TGGTATCAACCGTTGTCGAC+TGG - chr8.1:28150426-28150445 MS.gene44939:CDS 50.0%
TTCCTCTGCAGCTTGATGAG+TGG - chr8.1:28150393-28150412 MS.gene44939:CDS 50.0%
! GGCATTAGGTTGTGTTGCAC+AGG + chr8.1:28147284-28147303 None:intergenic 50.0%
! GGTATCAACCGTTGTCGACT+GGG - chr8.1:28150427-28150446 MS.gene44939:CDS 50.0%
!! ACTTCTGGAAGCACTCCTTG+TGG + chr8.1:28147190-28147209 None:intergenic 50.0%
!! CAAGGAGTGCTTCCAGAAGT+TGG - chr8.1:28147190-28147209 MS.gene44939:intron 50.0%
!! CTTCTGGAAGCACTCCTTGT+GGG + chr8.1:28147189-28147208 None:intergenic 50.0%
CACCACTCATCAAGCTGCAG+AGG + chr8.1:28150398-28150417 None:intergenic 55.0%
CACGTCATTGACATAGGCCC+AGG - chr8.1:28149417-28149436 MS.gene44939:intron 55.0%
CTCTGCAGCTTGATGAGTGG+TGG - chr8.1:28150396-28150415 MS.gene44939:CDS 55.0%
GAGAAGGCAGATGCAGTAGG+AGG - chr8.1:28149855-28149874 MS.gene44939:intron 55.0%
GTCATTGACATAGGCCCAGG+AGG - chr8.1:28149420-28149439 MS.gene44939:intron 55.0%
TGATGTGGCTGCATGTGCAG+CGG - chr8.1:28146632-28146651 MS.gene44939:CDS 55.0%
! TGATGAGTGGTGGGAGCAAC+TGG - chr8.1:28150406-28150425 MS.gene44939:CDS 55.0%
AAGGGCCATTGCTGCTCGCA+AGG - chr8.1:28150076-28150095 MS.gene44939:intron 60.0%
TGCATGTGCAGCGGAGCAGC+TGG - chr8.1:28146641-28146660 MS.gene44939:CDS 65.0%
!! GCAGCGGAGCAGCTGGCCTT+TGG - chr8.1:28146648-28146667 MS.gene44939:intron 70.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 28146612 28150452 28146612 ID=MS.gene44939
chr8.1 mRNA 28146612 28150452 28146612 ID=MS.gene44939.t1;Parent=MS.gene44939
chr8.1 exon 28150355 28150452 28150355 ID=MS.gene44939.t1.exon1;Parent=MS.gene44939.t1
chr8.1 CDS 28150355 28150452 28150355 ID=cds.MS.gene44939.t1;Parent=MS.gene44939.t1
chr8.1 exon 28148854 28148926 28148854 ID=MS.gene44939.t1.exon2;Parent=MS.gene44939.t1
chr8.1 CDS 28148854 28148926 28148854 ID=cds.MS.gene44939.t1;Parent=MS.gene44939.t1
chr8.1 exon 28148690 28148772 28148690 ID=MS.gene44939.t1.exon3;Parent=MS.gene44939.t1
chr8.1 CDS 28148690 28148772 28148690 ID=cds.MS.gene44939.t1;Parent=MS.gene44939.t1
chr8.1 exon 28147490 28147550 28147490 ID=MS.gene44939.t1.exon4;Parent=MS.gene44939.t1
chr8.1 CDS 28147490 28147550 28147490 ID=cds.MS.gene44939.t1;Parent=MS.gene44939.t1
chr8.1 exon 28147290 28147350 28147290 ID=MS.gene44939.t1.exon5;Parent=MS.gene44939.t1
chr8.1 CDS 28147290 28147350 28147290 ID=cds.MS.gene44939.t1;Parent=MS.gene44939.t1
chr8.1 exon 28146922 28146985 28146922 ID=MS.gene44939.t1.exon6;Parent=MS.gene44939.t1
chr8.1 CDS 28146922 28146985 28146922 ID=cds.MS.gene44939.t1;Parent=MS.gene44939.t1
chr8.1 exon 28146612 28146660 28146612 ID=MS.gene44939.t1.exon7;Parent=MS.gene44939.t1
chr8.1 CDS 28146612 28146660 28146612 ID=cds.MS.gene44939.t1;Parent=MS.gene44939.t1
Gene Sequence

>MS.gene44939

ATGGAGAAGGAGGGTTCTGTTGATGTGGCTGCATGTGCAGCGGAGCAGCTGGCCTTTGGAGTACCTGCTTCAGTTTGGGAGAAAAAGGTCAATTACAGGTATCTTGTTTAATTTTTGTGTGGGTTTTGCTTATTTTTGCGATTTGAGTTTGTCTGAGATTTGTGCTAGTTATTTTTCAGTTTAAATTTCATTGCTTTGTTTGTTACAATGGTGGTTTCCTATAGTTTATAAAGTCAGTCACATCTCCGGCAAAATGAATAATTTAATTATGTTTTGATGGAAATCTTCATTCTATATTAGCTTGATTCTAGAACCATTTAGGGACAATTATATAAAGGCCATTTGGGAACATGACCTTATGAAATTAGGCTTGATATTATGGCTACTACTTTAGCTAATTTAAGCCAACAATTTAATGGATGGTTTGAACTAATACACCATTGCACATTCCAACAAATACACCATTGCACATTCCAACAATTTGTGGTCAGTAAGATAACTGGATCTTTTGATCAATAATTCTGGTTTTGTCATGAGATTCAAGAGTTAAATGAAGCCATCATTTTAGCGAAGACCCACAAGGAGTGCTTCCAGAAGTTGGTAATTCGTCCTTCCAAGATAGTGCTCTTGTGTCTCCCACCATCGATCGAAAAACATTAATGGTTTGTGCCTGTGCAACACAACCTAATGCCACTTTTCTGCTGTTGTTTTGCTTATGGTGCTGTTGTTTTTGTTTTTGCATGCTGTTTATAATGCCCAACTATTTTCTGATTTTTCTCTTTATTGTTTTTATATGTTTTGTTTTAGATGAGGAACTTATAGCAAGATTTGGCCCTACTAAATGAATCAAAAGAAAAATATGTCAATCATGTATACTAGAGTTGACATGGATGATCCGCCTGATTGTTGATTAAAGCTTAAGAATAAGGTATTTGAGTTAATTTTCAAACAATGGAACGTACGTAATATTGTTTTAGATCAATCGCATACTGCTTTCTATTTTTCTCGTTCAAATCATTTTTATTGAAGATCTATTACACTAATTTAAACAATGGAGTACCAAGTTGAGAAACTCAAGGTTAACATGCCTACCTTATAATATCATGGCATGTTGTGGTTATTAAAAATTGAAAGGTTTATTCATATAACTACCTAATTTAGATCTAACATTGGTGTAGATGGTTCATCTTATTAAGTCGTTACAGTTCAATTTATCTCAGATTCGTCGTTACAGTTCAATTTATCTCAGATTCGAGCATCAATCAACGAAGAAACTTCTCAGCTTCGAGCTTCTAAGATTTGATTCACTTTTCATATTCGAAGTAAACTGTTGAGTATAGGCCAATATGCCGTAGTTTTTCTGGTTAGCATACAAGTTGATGCTTCAAAGAGTTTTATTATACACTTCTGAGTTTGCTTTGAATTGAAGATACATTTCTTTGTTGCAAAAAATGAACTTGAATGTGGATGCTGCATTGATTTTAGTTTTATATTGTCGTGCTTACATTGTGCAATGTTTATGACAGTGGATGCAGGGTAGATGCCAGTGAAGCTGCTATGGTTCTACTTCCTTCAAATATTACAGTTTTTGCTCTTGAAGTAAGTGCTTACTCATGATGTCTAGATTTCTAGATTCTACATGTTGTCACCCTTGCGGTCATGTTCTGTATTGATTTCTAGATTCTACATGATGTCCTTTTTTCGTACTTGGCCAATGGAACTGTAATACTATTCCAACAATATATTTTAGGTGATCATGCAACGTATGTAGATGAGGATGTCATCAAAGAAAACTAGCACATATTTTCTTAAGGTATACAAAAAAAATTGGTTCATTAGGCTTTGAAAAGTTACAGGGGAATTAAACAAGCAAAAAAGGCATAACTACCGATTCATAATGGCCATGATGTTTTCTCAATATTGTTGTGTTTATTCTCAGGTTGCACTAGTATTTGATGGTATCCAGACCTAAGGTTTAGGTCTAGTTTAGAGAAACTATCTTTAACAGGTTTATCATTTTAGCGCATAGCAATTCATCAACTGTGTGCATAGAAAAACTATCTTTAACGAGTTTATCATTTAAAGTCCTATATATACTTCATACAAAATCTCCAAGTACCATATTTCTGGTGCAGTTTCTTTATGGAGTTATTGTAGCACATAATCTCATGATTCTCCCTAAATTTGTGTGGCTAGCCGTGAAGTGCCTAAGATCATATATGCACCTTATACAAGTACCAATTACACCAGTGTTCACAATTCATGCCCATTGAACTATGACATGAAGCTGTTTCATAACCTCTTCTGCTTTCATTGTTTGGCCATTTCCTGCTAGCACTTTAAAACAAGGTGTTATTTCAACACTTCTTTTGCCAATCTGACCTTAATTTTGGTGTGCCAACATTGTTTACTCCTTTCATAGCATTTAGAGACAAATGGTATTCTCTACCTTGCTGCTCAAGGTTTGATTATGGTAAATCAAGTGGTTCATTCTCTTCATCAGTATTTGTTAGGATATAGAATTCTTCATCAGTATTTGTTAGGATATAGAATAATGGCTAACTAGAGTAGTTAAAGTAGTTAAGTATTGAAATATTGTAGTTAAGGCCTCAATTGAGTTAAGGCCTCAATTGCGGTCATGGCTGATGTCTTCAATATTTTGTTCAAATTACTTATTTTGTAGTTTTAATCATTCTTGTGTAACTGGGCATGCCATGTCACTGCATTTATCCATTTTAATATTGAGACATGGTCTTCATTGAATGTTTTTGTTGCAAACAGTATCAAAGCAGAACCTTCATGGTTCACGTCATTGACATAGGCCCAGGAGGACGTAAGCTTTGATATTTTGGACTAAATTTGGGCATACTGCTAATTTGTCGAGTTATTTCACCTATGGCAGCTGTAATGAAAAGAATGCTTGCCAAAAGATTCTGGAAAAGACGGGGCTTAAAGGATATCGGGTAATTTGAAATGTTACAGCATAATATTTATTGCTTTTTTGTTCTTGTCCATAGTTCTAATATTAAGCTCCTGACACCTTAGCAACAACTATAACACATGTATGTCATAATTTGTTTGATTGGCTGTCCAATGTTGTAGATTGGAAAAACAAAGGTATTCTTGAGAGCAGGTCAGATGGCTGAACTAGATGCTCAGAGAGGTGAAATAGCCTAATTCATTTCTTAGGATAGATGTAATTTTATAAAGTATAAACGTCCTTAATTAGAACAGTGTGTCTCAGAGAAGGCAGATGCAGTAGGAGGCCTCATTACACAATCATTCTCCCTTCTCTACATATTTAATTTAATATACACAACATGCTTTTTCTAGGAAGACTCGCATTCAAACTCTATGAGAAAATGAGAAGGGAGGCCGCTGCTCGCAAAGAACATACGCAGTTACAAAACTAGGAAGGCGTATAAAAAACTGCATATGTCAGTACTTACTTTGCAAACAACTTTAAGGGCCATTGCTGCTCGCAAGGAATTCAGATTTAGGAAACAGACCAAAGCTTCCATCATTATTCAGGTTTTGGTCGAAAACTAATTTAGATTATCTACTATGGAGCCATTAGTGTTATAAGATTGATATACCTTAAAACAATGCTGAAAAATTCAGGAACGAGTTCATGCAACTTTTGCTAAGCATGTTTATTTACATATATTGCTATATAAAAAACTTCATCACAATTGTTCAATTTGATATGCATTCTCTTGGTGCATTCTTATGTGTTCGATGATAACTATTAAAATTTCTATTTTTATTCTTACATTGCAACTTCCTCTGCAGCTTGATGAGTGGTGGGAGCAACTGGTATCAACCGTTGTCGACTGGGTGA

Protein sequence

>MS.gene44939.t1

MEKEGSVDVAACAAEQLAFGVPASVWEKKVNYSGCRVDASEAAMVLLPSNITVFALEILHDVLFSYLANGTVILFQQYILGDHATCNEKNACQKILEKTGLKGYRIGKTKVFLRAGQMAELDAQRGPLLLARNSDLGNRPKLPSLFSLMSGGSNWYQPLSTG