Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45076.t1 | XP_003613278.1 | 97.6 | 336 | 6 | 1 | 1 | 336 | 1 | 334 | 4.60E-190 | 673.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45076.t1 | K4PW38 | 35.4 | 246 | 118 | 8 | 14 | 245 | 31 | 249 | 6.3e-31 | 136.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45076.t1 | G7K2R0 | 97.6 | 336 | 6 | 1 | 1 | 336 | 1 | 334 | 3.3e-190 | 673.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene45076 | 0.854455 | 1.22E-61 | -1.69E-46 |
| MS.gene050807 | MS.gene45076 | 0.802393 | 5.73E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene45076 | 0.805365 | 1.38E-49 | -1.69E-46 |
| MS.gene055358 | MS.gene45076 | 0.804961 | 1.68E-49 | -1.69E-46 |
| MS.gene060137 | MS.gene45076 | -0.805656 | 1.20E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45076.t1 | MTR_5g034840 | 96.481 | 341 | 10 | 1 | 1 | 341 | 1 | 339 | 0.0 | 681 |
| MS.gene45076.t1 | MTR_1g018810 | 51.185 | 211 | 80 | 5 | 13 | 217 | 11 | 204 | 5.79e-70 | 221 |
| MS.gene45076.t1 | MTR_2g078750 | 38.537 | 205 | 99 | 6 | 14 | 218 | 20 | 197 | 7.11e-36 | 135 |
| MS.gene45076.t1 | MTR_2g078750 | 40.000 | 155 | 73 | 3 | 64 | 218 | 1 | 135 | 4.38e-28 | 112 |
| MS.gene45076.t1 | MTR_2g078750 | 42.553 | 94 | 54 | 0 | 125 | 218 | 11 | 104 | 4.60e-18 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45076.t1 | AT1G60060 | 68.421 | 361 | 66 | 9 | 1 | 334 | 1 | 340 | 7.04e-161 | 455 |
| MS.gene45076.t1 | AT1G60060 | 63.924 | 316 | 66 | 9 | 46 | 334 | 6 | 300 | 3.25e-124 | 361 |
| MS.gene45076.t1 | AT5G53900 | 38.333 | 240 | 118 | 7 | 14 | 244 | 21 | 239 | 4.49e-39 | 142 |
| MS.gene45076.t1 | AT3G15240 | 37.073 | 205 | 107 | 4 | 14 | 218 | 34 | 216 | 4.25e-38 | 139 |
| MS.gene45076.t1 | AT5G53900 | 39.844 | 128 | 67 | 2 | 126 | 244 | 1 | 127 | 1.70e-20 | 90.1 |
| MS.gene45076.t1 | AT5G53900 | 39.844 | 128 | 67 | 2 | 126 | 244 | 1 | 127 | 1.70e-20 | 90.1 |
| MS.gene45076.t1 | AT2G31280 | 30.928 | 194 | 83 | 9 | 15 | 207 | 6 | 149 | 4.68e-15 | 76.6 |
| MS.gene45076.t1 | AT2G31280 | 30.928 | 194 | 83 | 9 | 15 | 207 | 6 | 149 | 4.68e-15 | 76.6 |
| MS.gene45076.t1 | AT2G27230 | 27.488 | 211 | 105 | 8 | 13 | 218 | 4 | 171 | 2.27e-13 | 71.6 |
| MS.gene45076.t1 | AT2G27230 | 27.488 | 211 | 105 | 8 | 13 | 218 | 4 | 171 | 2.27e-13 | 71.6 |
Find 72 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAGCTCATCATCAGTTTA+TGG | 0.128324 | 5.3:-23811232 | MS.gene45076:CDS |
| CAATCACCGGTGTTTATTTC+AGG | 0.209024 | 5.3:+23811256 | None:intergenic |
| TCCGAATGATGACATTAAAT+AGG | 0.244882 | 5.3:-23808769 | MS.gene45076:CDS |
| TCACATGAGATCTATAACTA+TGG | 0.263874 | 5.3:-23811151 | MS.gene45076:CDS |
| TTGGGTGGAGGGTAGTTTCT+AGG | 0.275012 | 5.3:+23811723 | None:intergenic |
| AACACAAACACAACATGTTT+TGG | 0.280192 | 5.3:-23809863 | MS.gene45076:CDS |
| AGAGAAGGTGTTGTTCAATT+AGG | 0.283607 | 5.3:-23810585 | MS.gene45076:CDS |
| AAATTAATTTCTTGATCATT+AGG | 0.297602 | 5.3:+23810967 | None:intergenic |
| CCGAATGATGACATTAAATA+GGG | 0.299156 | 5.3:-23808768 | MS.gene45076:CDS |
| CAACGAGCATTGGAATTTAC+AGG | 0.318102 | 5.3:-23809829 | MS.gene45076:CDS |
| TATATGCATGCACAGGATAT+TGG | 0.324411 | 5.3:-23811320 | MS.gene45076:intron |
| AGGATATTGGTTTGGGAAGA+TGG | 0.329021 | 5.3:-23811307 | MS.gene45076:CDS |
| ATTGATGGAGTTACTTTCAT+TGG | 0.336300 | 5.3:+23809952 | None:intergenic |
| TCAGTTCTTGTCTGGTATAA+AGG | 0.362612 | 5.3:-23810758 | MS.gene45076:intron |
| GCATGCACAGGATATTGGTT+TGG | 0.384339 | 5.3:-23811315 | MS.gene45076:intron |
| TCACCAACATCAAGTTGTTC+AGG | 0.392523 | 5.3:+23809748 | None:intergenic |
| GACATCTTGAAGAAAAGTTC+AGG | 0.396788 | 5.3:+23811172 | None:intergenic |
| CATGCACAGGATATTGGTTT+GGG | 0.400265 | 5.3:-23811314 | MS.gene45076:intron |
| TCATCATCAGCATACCCTTA+TGG | 0.403770 | 5.3:-23810069 | MS.gene45076:CDS |
| GCTTCAAGACTACTCATTGA+TGG | 0.406362 | 5.3:+23809937 | None:intergenic |
| TGGGAAGCTCAGTTCTTGTC+TGG | 0.414012 | 5.3:-23810766 | MS.gene45076:CDS |
| CTAGCTCATCATCAGTTTAT+GGG | 0.418675 | 5.3:-23811231 | MS.gene45076:CDS |
| CCCTATTTAATGTCATCATT+CGG | 0.422063 | 5.3:+23808768 | None:intergenic |
| TTTACAGCACCCTAGGACTT+GGG | 0.440440 | 5.3:-23810785 | MS.gene45076:intron |
| CAAGAGGAAACAGAAGGAAT+TGG | 0.444449 | 5.3:-23811462 | MS.gene45076:intron |
| TGTTCTGATGGACCACCATA+AGG | 0.450763 | 5.3:+23810054 | None:intergenic |
| GTTAGATAATGAAGAAGAAG+AGG | 0.457583 | 5.3:-23809779 | MS.gene45076:CDS |
| CTATGATCTTCTTACTTGGG+TGG | 0.478789 | 5.3:+23811708 | None:intergenic |
| TGATCTTCTTACTTGGGTGG+AGG | 0.479359 | 5.3:+23811711 | None:intergenic |
| GAACAATGGCACAACTTTCA+AGG | 0.484632 | 5.3:-23810036 | MS.gene45076:CDS |
| AACTGAGCTTCCCAAGTCCT+AGG | 0.490005 | 5.3:+23810775 | None:intergenic |
| AGCTACATTGAAAGCATACC+AGG | 0.501005 | 5.3:-23810111 | MS.gene45076:CDS |
| CTGCAGATCATAGTCATAAG+TGG | 0.505039 | 5.3:-23811002 | MS.gene45076:CDS |
| GTTCTGATGGACCACCATAA+GGG | 0.509808 | 5.3:+23810055 | None:intergenic |
| GAGATCTATAACTATGGAGA+AGG | 0.511952 | 5.3:-23811145 | MS.gene45076:CDS |
| TAATATAGGTGGGAAGGACA+AGG | 0.515798 | 5.3:-23811499 | MS.gene45076:intron |
| TAAGGGTATGCTGATGATGA+TGG | 0.520173 | 5.3:+23810072 | None:intergenic |
| GATCTTCTTACTTGGGTGGA+GGG | 0.521140 | 5.3:+23811712 | None:intergenic |
| TGTGTATAATATAGGTGGGA+AGG | 0.521340 | 5.3:-23811505 | MS.gene45076:intron |
| AACACAACAACAACGAGCAT+TGG | 0.528793 | 5.3:-23809839 | MS.gene45076:CDS |
| AAGTTGTGCCATTGTTCTGA+TGG | 0.534050 | 5.3:+23810042 | None:intergenic |
| GGAAGAACATCTTACTCCAT+TGG | 0.536644 | 5.3:-23811835 | MS.gene45076:CDS |
| TCAGGTTGAAGACCTTGGTA+AGG | 0.540371 | 5.3:+23811190 | None:intergenic |
| CCATAAACTGATGATGAGCT+AGG | 0.545039 | 5.3:+23811232 | None:intergenic |
| GGGTGTGGAAGTAGCACTCC+TGG | 0.547961 | 5.3:+23810093 | None:intergenic |
| AAAGTTCAGGTTGAAGACCT+TGG | 0.548638 | 5.3:+23811185 | None:intergenic |
| AAATTAATTTCTTGTCAGCA+TGG | 0.554884 | 5.3:-23810954 | MS.gene45076:CDS |
| ACCTTCTCTAACAGCAATGA+GGG | 0.566133 | 5.3:+23810599 | None:intergenic |
| AGAAGATGAGTAACAGCCAA+TGG | 0.572438 | 5.3:+23811819 | None:intergenic |
| CATCCATGAAAATTCTCAGT+GGG | 0.580339 | 5.3:-23811772 | MS.gene45076:CDS |
| TATGCTGATGATGATGGGTG+TGG | 0.582762 | 5.3:+23810078 | None:intergenic |
| AATATAGGTGGGAAGGACAA+GGG | 0.583406 | 5.3:-23811498 | MS.gene45076:intron |
| ACTGAGCTTCCCAAGTCCTA+GGG | 0.584163 | 5.3:+23810776 | None:intergenic |
| CACCTTCTCTAACAGCAATG+AGG | 0.591099 | 5.3:+23810598 | None:intergenic |
| GCCCTCATTGCTGTTAGAGA+AGG | 0.593948 | 5.3:-23810600 | MS.gene45076:CDS |
| ATATAGGTGGGAAGGACAAG+GGG | 0.594932 | 5.3:-23811497 | MS.gene45076:intron |
| AGCATTGCACCACAGCATCA+AGG | 0.600171 | 5.3:-23810012 | MS.gene45076:CDS |
| GGGGCATATGATAGATCAAG+AGG | 0.613030 | 5.3:-23811478 | MS.gene45076:CDS |
| TGTTGTGGTGGAACAACTGA+AGG | 0.615956 | 5.3:+23809898 | None:intergenic |
| AGATCTATAACTATGGAGAA+GGG | 0.626888 | 5.3:-23811144 | MS.gene45076:intron |
| TCAATTAGGAGCTGTTCACA+AGG | 0.628502 | 5.3:-23810571 | MS.gene45076:intron |
| ATAGATCAAGAGGAAACAGA+AGG | 0.628702 | 5.3:-23811468 | MS.gene45076:CDS |
| AAGGGTATGCTGATGATGAT+GGG | 0.632300 | 5.3:+23810073 | None:intergenic |
| TGATGAGCTAGGACAATCAC+CGG | 0.633783 | 5.3:+23811243 | None:intergenic |
| AATTGATCACCTTGATGCTG+TGG | 0.645054 | 5.3:+23810003 | None:intergenic |
| AGACCTGAACAACTTGATGT+TGG | 0.656658 | 5.3:-23809751 | MS.gene45076:intron |
| GAATTAATTCAACCTTACCA+AGG | 0.657107 | 5.3:-23811202 | MS.gene45076:CDS |
| ATGGTGGTCCATCAGAACAA+TGG | 0.666115 | 5.3:-23810050 | MS.gene45076:CDS |
| GATTGAAGACTTGAGCTATG+TGG | 0.668398 | 5.3:-23810154 | MS.gene45076:CDS |
| TCATCAGCATACCCTTATGG+TGG | 0.673613 | 5.3:-23810066 | MS.gene45076:CDS |
| GCATCCATGAAAATTCTCAG+TGG | 0.703195 | 5.3:-23811773 | MS.gene45076:CDS |
| GCAGCACCTGAAATAAACAC+CGG | 0.739013 | 5.3:-23811262 | MS.gene45076:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATAATTAATAATTAT+TGG | + | chr5.3:23811312-23811331 | None:intergenic | 0.0% |
| !! | AATTGAATTAAATTAAAGAA+AGG | + | chr5.3:23809952-23809971 | None:intergenic | 10.0% |
| !! | ACATAAAAAATAGTATAAAA+AGG | + | chr5.3:23811793-23811812 | None:intergenic | 10.0% |
| !! | ACTTGATTATAAAAAAAAAA+TGG | - | chr5.3:23809189-23809208 | MS.gene45076:intron | 10.0% |
| !! | TCAATAAAAATAGTATAAAA+AGG | + | chr5.3:23811672-23811691 | None:intergenic | 10.0% |
| !!! | ATACTATTTTTTATGTATTT+AGG | - | chr5.3:23811797-23811816 | MS.gene45076:CDS | 10.0% |
| !!! | ATATTTTTTGTGTATAATAT+AGG | - | chr5.3:23809087-23809106 | MS.gene45076:intron | 10.0% |
| !!! | TACTATTTTTTATGTATTTA+GGG | - | chr5.3:23811798-23811817 | MS.gene45076:CDS | 10.0% |
| !! | AAATTAATTTCTTGATCATT+AGG | + | chr5.3:23809636-23809655 | None:intergenic | 15.0% |
| !! | AATGGATCAAATAATAATAA+TGG | - | chr5.3:23810933-23810952 | MS.gene45076:intron | 15.0% |
| !!! | AAATATTTATTTGAGATTCT+GGG | - | chr5.3:23811406-23811425 | MS.gene45076:intron | 15.0% |
| !!! | TAAATATTTATTTGAGATTC+TGG | - | chr5.3:23811405-23811424 | MS.gene45076:intron | 15.0% |
| !!! | TTTTGTGATAACTATATTAT+TGG | - | chr5.3:23811353-23811372 | MS.gene45076:intron | 15.0% |
| !! | CTGGTAATAATTTAAGAAAA+TGG | + | chr5.3:23810219-23810238 | None:intergenic | 20.0% |
| !! | GTTGCATATATATATATATG+AGG | - | chr5.3:23808994-23809013 | MS.gene45076:intron | 20.0% |
| !!! | AATGTTTTAAGAAAAATGTC+CGG | + | chr5.3:23810359-23810378 | None:intergenic | 20.0% |
| !!! | CATTTTCTTAAATTATTACC+AGG | - | chr5.3:23810217-23810236 | MS.gene45076:intron | 20.0% |
| !!! | GAAGTTTTAATTAAGCAAAT+AGG | - | chr5.3:23809528-23809547 | MS.gene45076:intron | 20.0% |
| !!! | TTAATTAAATTTTATGGAGC+AGG | - | chr5.3:23809559-23809578 | MS.gene45076:intron | 20.0% |
| !!! | TTTTTGTGTATAATATAGGT+GGG | - | chr5.3:23809091-23809110 | MS.gene45076:intron | 20.0% |
| !!! | TTTTTTGTGTATAATATAGG+TGG | - | chr5.3:23809090-23809109 | MS.gene45076:intron | 20.0% |
| ! | AAATTAATTTCTTGTCAGCA+TGG | - | chr5.3:23809646-23809665 | MS.gene45076:intron | 25.0% |
| ! | AACTAGATATATCCATACTA+AGG | - | chr5.3:23811604-23811623 | MS.gene45076:intron | 25.0% |
| ! | GAAATCATTCTATCTATTTC+AGG | + | chr5.3:23809794-23809813 | None:intergenic | 25.0% |
| !! | TCAATCAAATTTTGTCTCTA+TGG | - | chr5.3:23810413-23810432 | MS.gene45076:intron | 25.0% |
| !! | TTTTGTCTCTATGGAATTTA+AGG | - | chr5.3:23810422-23810441 | MS.gene45076:intron | 25.0% |
| !!! | AAAAAACAAAAGTACCTTGA+AGG | + | chr5.3:23811549-23811568 | None:intergenic | 25.0% |
| !!! | ATGTTTTAAGAAAAATGTCC+GGG | + | chr5.3:23810358-23810377 | None:intergenic | 25.0% |
| !!! | GTTTGATTTTGAATTTGTTG+TGG | + | chr5.3:23810720-23810739 | None:intergenic | 25.0% |
| AGAGATATACTATGTGAATG+AGG | + | chr5.3:23809903-23809922 | None:intergenic | 30.0% | |
| AGATCTATAACTATGGAGAA+GGG | - | chr5.3:23809456-23809475 | MS.gene45076:intron | 30.0% | |
| CCCTATTTAATGTCATCATT+CGG | + | chr5.3:23811835-23811854 | None:intergenic | 30.0% | |
| CCGAATGATGACATTAAATA+GGG | - | chr5.3:23811832-23811851 | MS.gene45076:CDS | 30.0% | |
| GAATTAATTCAACCTTACCA+AGG | - | chr5.3:23809398-23809417 | MS.gene45076:intron | 30.0% | |
| GAGATATACTATGTGAATGA+GGG | + | chr5.3:23809902-23809921 | None:intergenic | 30.0% | |
| GTAGTGTATTGTAGTATGAA+GGG | - | chr5.3:23811114-23811133 | MS.gene45076:intron | 30.0% | |
| GTTAGATAATGAAGAAGAAG+AGG | - | chr5.3:23810821-23810840 | MS.gene45076:intron | 30.0% | |
| TCACATGAGATCTATAACTA+TGG | - | chr5.3:23809449-23809468 | MS.gene45076:intron | 30.0% | |
| TCCGAATGATGACATTAAAT+AGG | - | chr5.3:23811831-23811850 | MS.gene45076:CDS | 30.0% | |
| TGCATATTTCAGTTTCTTCT+TGG | - | chr5.3:23811085-23811104 | MS.gene45076:intron | 30.0% | |
| TTGCTATGATCTTCTTACTT+GGG | + | chr5.3:23808898-23808917 | None:intergenic | 30.0% | |
| ! | AACACAAACACAACATGTTT+TGG | - | chr5.3:23810737-23810756 | MS.gene45076:intron | 30.0% |
| ! | ATTGATGGAGTTACTTTCAT+TGG | + | chr5.3:23810651-23810670 | None:intergenic | 30.0% |
| ! | TATTTATTTGAGATTCTGGG+TGG | - | chr5.3:23811409-23811428 | MS.gene45076:intron | 30.0% |
| ! | TTTCAGATTTAAGACGTGTT+TGG | - | chr5.3:23810128-23810147 | MS.gene45076:CDS | 30.0% |
| ! | TTTGCTATGATCTTCTTACT+TGG | + | chr5.3:23808899-23808918 | None:intergenic | 30.0% |
| !!! | TGATTTTGAATTTGTTGTGG+TGG | + | chr5.3:23810717-23810736 | None:intergenic | 30.0% |
| AACCACAATCATGTTGCAAT+CGG | - | chr5.3:23810292-23810311 | MS.gene45076:intron | 35.0% | |
| ACAATCTTCACACATTTGCA+TGG | + | chr5.3:23811161-23811180 | None:intergenic | 35.0% | |
| ATAGATCAAGAGGAAACAGA+AGG | - | chr5.3:23809132-23809151 | MS.gene45076:intron | 35.0% | |
| ATGTTGATCCAAGTACAATG+TGG | + | chr5.3:23811239-23811258 | None:intergenic | 35.0% | |
| ATTGTAGTGAGAGAGTTGTT+AGG | - | chr5.3:23811025-23811044 | MS.gene45076:intron | 35.0% | |
| CACACATTTGCATGGAATAA+TGG | + | chr5.3:23811153-23811172 | None:intergenic | 35.0% | |
| CATACTACAATACACTACCA+AGG | + | chr5.3:23811112-23811131 | None:intergenic | 35.0% | |
| CATCAAGATCATCTTGGAAA+TGG | - | chr5.3:23810915-23810934 | MS.gene45076:intron | 35.0% | |
| CATCCATGAAAATTCTCAGT+GGG | - | chr5.3:23808828-23808847 | MS.gene45076:intron | 35.0% | |
| CATTTCCAAGATGATCTTGA+TGG | + | chr5.3:23810917-23810936 | None:intergenic | 35.0% | |
| CATTTCCATCAAGATCATCT+TGG | - | chr5.3:23810909-23810928 | MS.gene45076:intron | 35.0% | |
| CTAGCTCATCATCAGTTTAT+GGG | - | chr5.3:23809369-23809388 | MS.gene45076:intron | 35.0% | |
| CTCTCTCACTACAATATGTT+AGG | + | chr5.3:23811020-23811039 | None:intergenic | 35.0% | |
| GACATCTTGAAGAAAAGTTC+AGG | + | chr5.3:23809431-23809450 | None:intergenic | 35.0% | |
| GAGATCTATAACTATGGAGA+AGG | - | chr5.3:23809455-23809474 | MS.gene45076:intron | 35.0% | |
| GGTAGTGTATTGTAGTATGA+AGG | - | chr5.3:23811113-23811132 | MS.gene45076:intron | 35.0% | |
| TAGCCAAATACATACCTTCA+AGG | - | chr5.3:23811532-23811551 | MS.gene45076:intron | 35.0% | |
| TATATGCATGCACAGGATAT+TGG | - | chr5.3:23809280-23809299 | MS.gene45076:intron | 35.0% | |
| TCAGTTCTTGTCTGGTATAA+AGG | - | chr5.3:23809842-23809861 | MS.gene45076:CDS | 35.0% | |
| TCTATGTTATATGCATGCAC+AGG | - | chr5.3:23809273-23809292 | MS.gene45076:intron | 35.0% | |
| TGAGATAAACTGCCTTAGTA+TGG | + | chr5.3:23811619-23811638 | None:intergenic | 35.0% | |
| TGTGTATAATATAGGTGGGA+AGG | - | chr5.3:23809095-23809114 | MS.gene45076:intron | 35.0% | |
| ! | AAACCCACTGAGAATTTTCA+TGG | + | chr5.3:23808834-23808853 | None:intergenic | 35.0% |
| ! | GTACCTTGAAGGTATGTATT+TGG | + | chr5.3:23811538-23811557 | None:intergenic | 35.0% |
| !! | AAATGATGTTGATGATACCC+TGG | + | chr5.3:23810894-23810913 | None:intergenic | 35.0% |
| !! | AGAGAAGGTGTTGTTCAATT+AGG | - | chr5.3:23810015-23810034 | MS.gene45076:CDS | 35.0% |
| !!! | ATTTTATGGAGCAGGTTGAT+TGG | - | chr5.3:23809567-23809586 | MS.gene45076:intron | 35.0% |
| AACACAACAACAACGAGCAT+TGG | - | chr5.3:23810761-23810780 | MS.gene45076:CDS | 40.0% | |
| AATATAGGTGGGAAGGACAA+GGG | - | chr5.3:23809102-23809121 | MS.gene45076:intron | 40.0% | |
| AATTGATCACCTTGATGCTG+TGG | + | chr5.3:23810600-23810619 | None:intergenic | 40.0% | |
| ACCTTCTCTAACAGCAATGA+GGG | + | chr5.3:23810004-23810023 | None:intergenic | 40.0% | |
| AGAAGATGAGTAACAGCCAA+TGG | + | chr5.3:23808784-23808803 | None:intergenic | 40.0% | |
| AGACCTGAACAACTTGATGT+TGG | - | chr5.3:23810849-23810868 | MS.gene45076:intron | 40.0% | |
| AGAGTAGTAGTTCCATACCA+GGG | - | chr5.3:23810874-23810893 | MS.gene45076:intron | 40.0% | |
| CAAGAGGAAACAGAAGGAAT+TGG | - | chr5.3:23809138-23809157 | MS.gene45076:intron | 40.0% | |
| CAATCACCGGTGTTTATTTC+AGG | + | chr5.3:23809347-23809366 | None:intergenic | 40.0% | |
| CCAAGTACAATGTGGTAGAT+TGG | + | chr5.3:23811231-23811250 | None:intergenic | 40.0% | |
| CCAATCTACCACATTGTACT+TGG | - | chr5.3:23811228-23811247 | MS.gene45076:CDS | 40.0% | |
| CCTAGCTCATCATCAGTTTA+TGG | - | chr5.3:23809368-23809387 | MS.gene45076:intron | 40.0% | |
| CTATGATCTTCTTACTTGGG+TGG | + | chr5.3:23808895-23808914 | None:intergenic | 40.0% | |
| CTGCAGATCATAGTCATAAG+TGG | - | chr5.3:23809598-23809617 | MS.gene45076:intron | 40.0% | |
| GAACAATGGCACAACTTTCA+AGG | - | chr5.3:23810564-23810583 | MS.gene45076:intron | 40.0% | |
| GATTGAAGACTTGAGCTATG+TGG | - | chr5.3:23810446-23810465 | MS.gene45076:intron | 40.0% | |
| GCATCCATGAAAATTCTCAG+TGG | - | chr5.3:23808827-23808846 | MS.gene45076:intron | 40.0% | |
| GCTTCAAGACTACTCATTGA+TGG | + | chr5.3:23810666-23810685 | None:intergenic | 40.0% | |
| GGAAGAACATCTTACTCCAT+TGG | - | chr5.3:23808765-23808784 | MS.gene45076:CDS | 40.0% | |
| GGTGCTTGTATGTGTTTCAT+AGG | - | chr5.3:23810255-23810274 | MS.gene45076:intron | 40.0% | |
| TAATATAGGTGGGAAGGACA+AGG | - | chr5.3:23809101-23809120 | MS.gene45076:intron | 40.0% | |
| TCAATTAGGAGCTGTTCACA+AGG | - | chr5.3:23810029-23810048 | MS.gene45076:CDS | 40.0% | |
| TCATCATCAGCATACCCTTA+TGG | - | chr5.3:23810531-23810550 | MS.gene45076:intron | 40.0% | |
| TGAGAGAGAGAGAGAACAAA+GGG | + | chr5.3:23810066-23810085 | None:intergenic | 40.0% | |
| TTCAGTTTCTTCTTGGACCT+TGG | - | chr5.3:23811092-23811111 | MS.gene45076:intron | 40.0% | |
| ! | AAGGGTATGCTGATGATGAT+GGG | + | chr5.3:23810530-23810549 | None:intergenic | 40.0% |
| ! | AAGTTGTGCCATTGTTCTGA+TGG | + | chr5.3:23810561-23810580 | None:intergenic | 40.0% |
| ! | ACCAGGATTAGTGTTGTGTT+CGG | - | chr5.3:23810234-23810253 | MS.gene45076:intron | 40.0% |
| ! | AGCTACATTGAAAGCATACC+AGG | - | chr5.3:23810489-23810508 | MS.gene45076:intron | 40.0% |
| ! | CCATAAACTGATGATGAGCT+AGG | + | chr5.3:23809371-23809390 | None:intergenic | 40.0% |
| ! | GATTTCTTTTACAGCACCCT+AGG | - | chr5.3:23809808-23809827 | MS.gene45076:CDS | 40.0% |
| ! | TAAGGGTATGCTGATGATGA+TGG | + | chr5.3:23810531-23810550 | None:intergenic | 40.0% |
| ! | TCACCAACATCAAGTTGTTC+AGG | + | chr5.3:23810855-23810874 | None:intergenic | 40.0% |
| ! | TTATTTGAGATTCTGGGTGG+CGG | - | chr5.3:23811412-23811431 | MS.gene45076:intron | 40.0% |
| ! | TTTAAGACGTGTTTGGAGTC+CGG | - | chr5.3:23810135-23810154 | MS.gene45076:CDS | 40.0% |
| !! | AAAGTTCAGGTTGAAGACCT+TGG | + | chr5.3:23809418-23809437 | None:intergenic | 40.0% |
| !! | AGGATATTGGTTTGGGAAGA+TGG | - | chr5.3:23809293-23809312 | MS.gene45076:intron | 40.0% |
| !! | ATGTTGATGATACCCTGGTA+TGG | + | chr5.3:23810889-23810908 | None:intergenic | 40.0% |
| !! | CAACGAGCATTGGAATTTAC+AGG | - | chr5.3:23810771-23810790 | MS.gene45076:CDS | 40.0% |
| !! | CATGCACAGGATATTGGTTT+GGG | - | chr5.3:23809286-23809305 | MS.gene45076:intron | 40.0% |
| !!! | AGTGGGTTTATGCTGTTTTC+TGG | - | chr5.3:23808845-23808864 | MS.gene45076:intron | 40.0% |
| ACCGAACACAACACTAATCC+TGG | + | chr5.3:23810238-23810257 | None:intergenic | 45.0% | |
| AGAAGAGACCCTACTAAAGG+TGG | + | chr5.3:23811438-23811457 | None:intergenic | 45.0% | |
| ATATAGGTGGGAAGGACAAG+GGG | - | chr5.3:23809103-23809122 | MS.gene45076:intron | 45.0% | |
| ATGGTGGTCCATCAGAACAA+TGG | - | chr5.3:23810550-23810569 | MS.gene45076:intron | 45.0% | |
| CACCTTCTCTAACAGCAATG+AGG | + | chr5.3:23810005-23810024 | None:intergenic | 45.0% | |
| CTCCGATTGCAACATGATTG+TGG | + | chr5.3:23810297-23810316 | None:intergenic | 45.0% | |
| GAGAGAAGAGACCCTACTAA+AGG | + | chr5.3:23811441-23811460 | None:intergenic | 45.0% | |
| GAGAGTAGTAGTTCCATACC+AGG | - | chr5.3:23810873-23810892 | MS.gene45076:intron | 45.0% | |
| GATCTTCTTACTTGGGTGGA+GGG | + | chr5.3:23808891-23808910 | None:intergenic | 45.0% | |
| GCAGCACCTGAAATAAACAC+CGG | - | chr5.3:23809338-23809357 | MS.gene45076:intron | 45.0% | |
| GGGGCATATGATAGATCAAG+AGG | - | chr5.3:23809122-23809141 | MS.gene45076:intron | 45.0% | |
| GTGAGAGAGAGAGAGAACAA+AGG | + | chr5.3:23810067-23810086 | None:intergenic | 45.0% | |
| TCATAGATCAGTCGCATTCC+CGG | - | chr5.3:23810337-23810356 | MS.gene45076:intron | 45.0% | |
| TCATCAGCATACCCTTATGG+TGG | - | chr5.3:23810534-23810553 | MS.gene45076:intron | 45.0% | |
| TGAGCGAAACTACGAACGTT+TGG | + | chr5.3:23811481-23811500 | None:intergenic | 45.0% | |
| TGATCTTCTTACTTGGGTGG+AGG | + | chr5.3:23808892-23808911 | None:intergenic | 45.0% | |
| TGATGAGCTAGGACAATCAC+CGG | + | chr5.3:23809360-23809379 | None:intergenic | 45.0% | |
| TGTTAGACACCAACGTAAGC+CGG | + | chr5.3:23810157-23810176 | None:intergenic | 45.0% | |
| TTTACAGCACCCTAGGACTT+GGG | - | chr5.3:23809815-23809834 | MS.gene45076:CDS | 45.0% | |
| ! | GCATGCACAGGATATTGGTT+TGG | - | chr5.3:23809285-23809304 | MS.gene45076:intron | 45.0% |
| ! | GTTCTGATGGACCACCATAA+GGG | + | chr5.3:23810548-23810567 | None:intergenic | 45.0% |
| ! | TGTTCTGATGGACCACCATA+AGG | + | chr5.3:23810549-23810568 | None:intergenic | 45.0% |
| ! | TGTTGTGGTGGAACAACTGA+AGG | + | chr5.3:23810705-23810724 | None:intergenic | 45.0% |
| ! | TTTTACAGCACCCTAGGACT+TGG | - | chr5.3:23809814-23809833 | MS.gene45076:CDS | 45.0% |
| !! | TATGCTGATGATGATGGGTG+TGG | + | chr5.3:23810525-23810544 | None:intergenic | 45.0% |
| !! | TCAGGTTGAAGACCTTGGTA+AGG | + | chr5.3:23809413-23809432 | None:intergenic | 45.0% |
| !!! | GGGTTTATGCTGTTTTCTGG+AGG | - | chr5.3:23808848-23808867 | MS.gene45076:intron | 45.0% |
| !!! | TATTAGTTAATTAAATTTTA+TGG | - | chr5.3:23809553-23809572 | MS.gene45076:intron | 5.0% |
| AACTGAGCTTCCCAAGTCCT+AGG | + | chr5.3:23809828-23809847 | None:intergenic | 50.0% | |
| ACTGAGCTTCCCAAGTCCTA+GGG | + | chr5.3:23809827-23809846 | None:intergenic | 50.0% | |
| AGCATTGCACCACAGCATCA+AGG | - | chr5.3:23810588-23810607 | MS.gene45076:CDS | 50.0% | |
| CTCTCTCTCTCTCACACACA+AGG | - | chr5.3:23810072-23810091 | MS.gene45076:CDS | 50.0% | |
| TGGGAAGCTCAGTTCTTGTC+TGG | - | chr5.3:23809834-23809853 | MS.gene45076:CDS | 50.0% | |
| TTGCATCCTTGAACAGCAGC+AGG | + | chr5.3:23811274-23811293 | None:intergenic | 50.0% | |
| TTGGGTGGAGGGTAGTTTCT+AGG | + | chr5.3:23808880-23808899 | None:intergenic | 50.0% | |
| ! | GCCCTCATTGCTGTTAGAGA+AGG | - | chr5.3:23810000-23810019 | MS.gene45076:CDS | 50.0% |
| ACAGCAGCAGGAGCTAGCAT+TGG | + | chr5.3:23811262-23811281 | None:intergenic | 55.0% | |
| CTAGCTCCTGCTGCTGTTCA+AGG | - | chr5.3:23811265-23811284 | MS.gene45076:CDS | 55.0% | |
| ! | GTTTGGAGTCCGGCTTACGT+TGG | - | chr5.3:23810145-23810164 | MS.gene45076:CDS | 55.0% |
| GGGTGTGGAAGTAGCACTCC+TGG | + | chr5.3:23810510-23810529 | None:intergenic | 60.0% | |
| ! | GGTGGCGGCCACCTTTAGTA+GGG | - | chr5.3:23811427-23811446 | MS.gene45076:intron | 60.0% |
| ! | GGGTGGCGGCCACCTTTAGT+AGG | - | chr5.3:23811426-23811445 | MS.gene45076:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 23808763 | 23811859 | 23808763 | ID=MS.gene45076 |
| chr5.3 | mRNA | 23808763 | 23811859 | 23808763 | ID=MS.gene45076.t1;Parent=MS.gene45076 |
| chr5.3 | exon | 23811723 | 23811859 | 23811723 | ID=MS.gene45076.t1.exon1;Parent=MS.gene45076.t1 |
| chr5.3 | CDS | 23811723 | 23811859 | 23811723 | ID=cds.MS.gene45076.t1;Parent=MS.gene45076.t1 |
| chr5.3 | exon | 23811463 | 23811513 | 23811463 | ID=MS.gene45076.t1.exon2;Parent=MS.gene45076.t1 |
| chr5.3 | CDS | 23811463 | 23811513 | 23811463 | ID=cds.MS.gene45076.t1;Parent=MS.gene45076.t1 |
| chr5.3 | exon | 23811145 | 23811327 | 23811145 | ID=MS.gene45076.t1.exon3;Parent=MS.gene45076.t1 |
| chr5.3 | CDS | 23811145 | 23811327 | 23811145 | ID=cds.MS.gene45076.t1;Parent=MS.gene45076.t1 |
| chr5.3 | exon | 23810936 | 23811041 | 23810936 | ID=MS.gene45076.t1.exon4;Parent=MS.gene45076.t1 |
| chr5.3 | CDS | 23810936 | 23811041 | 23810936 | ID=cds.MS.gene45076.t1;Parent=MS.gene45076.t1 |
| chr5.3 | exon | 23810759 | 23810800 | 23810759 | ID=MS.gene45076.t1.exon5;Parent=MS.gene45076.t1 |
| chr5.3 | CDS | 23810759 | 23810800 | 23810759 | ID=cds.MS.gene45076.t1;Parent=MS.gene45076.t1 |
| chr5.3 | exon | 23810572 | 23810628 | 23810572 | ID=MS.gene45076.t1.exon6;Parent=MS.gene45076.t1 |
| chr5.3 | CDS | 23810572 | 23810628 | 23810572 | ID=cds.MS.gene45076.t1;Parent=MS.gene45076.t1 |
| chr5.3 | exon | 23809752 | 23810178 | 23809752 | ID=MS.gene45076.t1.exon7;Parent=MS.gene45076.t1 |
| chr5.3 | CDS | 23809752 | 23810178 | 23809752 | ID=cds.MS.gene45076.t1;Parent=MS.gene45076.t1 |
| chr5.3 | exon | 23808763 | 23808803 | 23808763 | ID=MS.gene45076.t1.exon8;Parent=MS.gene45076.t1 |
| chr5.3 | CDS | 23808763 | 23808803 | 23808763 | ID=cds.MS.gene45076.t1;Parent=MS.gene45076.t1 |
| Gene Sequence |
| Protein sequence |
