Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45200.t1 | XP_013447550.1 | 99.3 | 139 | 1 | 0 | 1 | 139 | 33 | 171 | 4.10E-65 | 257.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45200.t1 | Q9LVP9 | 71.9 | 139 | 39 | 0 | 1 | 139 | 33 | 171 | 1.2e-49 | 197.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45200.t1 | B7FGM6 | 99.3 | 139 | 1 | 0 | 1 | 139 | 33 | 171 | 2.9e-65 | 257.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050750 | MS.gene45200 | -0.800224 | 1.59E-48 | -1.69E-46 |
| MS.gene050820 | MS.gene45200 | -0.804078 | 2.57E-49 | -1.69E-46 |
| MS.gene050953 | MS.gene45200 | -0.811726 | 6.06E-51 | -1.69E-46 |
| MS.gene054405 | MS.gene45200 | -0.810083 | 1.38E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene45200 | -0.800664 | 1.30E-48 | -1.69E-46 |
| MS.gene059849 | MS.gene45200 | 0.839826 | 1.26E-57 | -1.69E-46 |
| MS.gene059896 | MS.gene45200 | 0.829148 | 6.05E-55 | -1.69E-46 |
| MS.gene060634 | MS.gene45200 | 0.851788 | 7.06E-61 | -1.69E-46 |
| MS.gene061040 | MS.gene45200 | 0.823213 | 1.56E-53 | -1.69E-46 |
| MS.gene061114 | MS.gene45200 | 0.83633 | 9.97E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 31 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATTTGTAGATTCGGAAAA+TGG | 0.148334 | 7.3:+86216992 | MS.gene45200:intron |
| AAGTTTGCAGCCAAACATTA+AGG | 0.247833 | 7.3:+86217028 | MS.gene45200:CDS |
| GCAAAATATTTCAGATATAA+AGG | 0.306073 | 7.3:+86216863 | MS.gene45200:CDS |
| CAAATCTAGTGACAGAATTA+AGG | 0.325551 | 7.3:+86218792 | MS.gene45200:CDS |
| CGGGATATGTTGTTGGAATC+AGG | 0.359202 | 7.3:+86217149 | MS.gene45200:CDS |
| TGTTGGAAACGGAAGAGCTT+GGG | 0.371438 | 7.3:+86218830 | MS.gene45200:CDS |
| GAACTTAAGAAACTTGTATC+TGG | 0.383535 | 7.3:+86217107 | MS.gene45200:CDS |
| TGTACTTCTTGCTAAGTTGC+GGG | 0.406118 | 7.3:+86217052 | MS.gene45200:CDS |
| AGAAGTACACCCTTAATGTT+TGG | 0.429162 | 7.3:-86217038 | None:intergenic |
| CTCTGCCCGGGATATGTTGT+TGG | 0.438296 | 7.3:+86217142 | MS.gene45200:CDS |
| AGTTTGCAGCCAAACATTAA+GGG | 0.439151 | 7.3:+86217029 | MS.gene45200:CDS |
| AATCGATGAGGCAGAAGCTT+TGG | 0.451935 | 7.3:+86216890 | MS.gene45200:CDS |
| GCTGAGAATGCAAATCTTGA+AGG | 0.459483 | 7.3:-86218861 | None:intergenic |
| AATATTTCAGATATAAAGGC+TGG | 0.486099 | 7.3:+86216867 | MS.gene45200:CDS |
| GTGACAGAATTAAGGACAGC+AGG | 0.496887 | 7.3:+86218800 | MS.gene45200:CDS |
| GTAACATGAACCCCTCTGCC+CGG | 0.498653 | 7.3:+86217129 | MS.gene45200:CDS |
| CTGATTCCAACAACATATCC+CGG | 0.518713 | 7.3:-86217148 | None:intergenic |
| GTGTACTTCTTGCTAAGTTG+CGG | 0.523629 | 7.3:+86217051 | MS.gene45200:CDS |
| GGACAGCAGGAGAACAATGT+TGG | 0.535680 | 7.3:+86218813 | MS.gene45200:CDS |
| CAGGAGAACAATGTTGGAAA+CGG | 0.537387 | 7.3:+86218819 | MS.gene45200:CDS |
| CAACAACATATCCCGGGCAG+AGG | 0.549166 | 7.3:-86217141 | None:intergenic |
| TAACATGAACCCCTCTGCCC+GGG | 0.559609 | 7.3:+86217130 | MS.gene45200:CDS |
| ATGTTGGAAACGGAAGAGCT+TGG | 0.571336 | 7.3:+86218829 | MS.gene45200:CDS |
| AACAACATATCCCGGGCAGA+GGG | 0.578673 | 7.3:-86217140 | None:intergenic |
| GTTGGAAACGGAAGAGCTTG+GGG | 0.586866 | 7.3:+86218831 | MS.gene45200:CDS |
| GATTCGGAAAATGGATCTTG+AGG | 0.594367 | 7.3:+86217001 | MS.gene45200:intron |
| AGGCATGGCAGATGCTATGA+CGG | 0.603594 | 7.3:+86217169 | MS.gene45200:CDS |
| TGATTCCAACAACATATCCC+GGG | 0.605197 | 7.3:-86217147 | None:intergenic |
| TATGTTGTTGGAATCAGGCA+TGG | 0.631211 | 7.3:+86217154 | MS.gene45200:CDS |
| TATAAAGGCTGGAATCGATG+AGG | 0.704491 | 7.3:+86216878 | MS.gene45200:CDS |
| ACAACATATCCCGGGCAGAG+GGG | 0.706468 | 7.3:-86217139 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAATAATAATAATAA+GGG | + | chr7.3:86217723-86217742 | MS.gene45200:intron | 0.0% |
| !! | ATATATATATATATATATAT+AGG | + | chr7.3:86217372-86217391 | MS.gene45200:intron | 0.0% |
| !! | TAATAATAATAATAATAATA+AGG | + | chr7.3:86217722-86217741 | MS.gene45200:intron | 0.0% |
| !! | TATATATATATATATATATA+GGG | + | chr7.3:86217371-86217390 | MS.gene45200:intron | 0.0% |
| !! | AAAACATTTATTGAAATATA+AGG | - | chr7.3:86217962-86217981 | None:intergenic | 10.0% |
| !! | ACTTTATTATTATTATGATT+AGG | - | chr7.3:86218229-86218248 | None:intergenic | 10.0% |
| !! | ATATTTAACCTTAAAATAAT+TGG | - | chr7.3:86217899-86217918 | None:intergenic | 10.0% |
| !! | ATCATAATAATAATAAAGTT+AGG | + | chr7.3:86218230-86218249 | MS.gene45200:intron | 10.0% |
| !! | CTTTATTATTATTATGATTA+GGG | - | chr7.3:86218228-86218247 | None:intergenic | 10.0% |
| !! | TATTTAACCTTAAAATAATT+GGG | - | chr7.3:86217898-86217917 | None:intergenic | 10.0% |
| !! | AAAAACATTTAATGAAATGT+AGG | + | chr7.3:86218153-86218172 | MS.gene45200:intron | 15.0% |
| !! | AAAAACATTTAATGAAATGT+AGG | - | chr7.3:86218172-86218153 | None:intergenic | 15.0% |
| !! | AAAACATTTAATGAAATGTA+GGG | + | chr7.3:86218154-86218173 | MS.gene45200:intron | 15.0% |
| !! | AAAACATTTAATGAAATGTA+GGG | - | chr7.3:86218173-86218154 | None:intergenic | 15.0% |
| !! | ATATTTAACCCTAAAATAAT+TGG | + | chr7.3:86218044-86218063 | MS.gene45200:intron | 15.0% |
| !! | TATTTAACCCTAAAATAATT+GGG | + | chr7.3:86218045-86218064 | MS.gene45200:intron | 15.0% |
| !! | TTAAAATCCCTAAAATAATA+AGG | + | chr7.3:86217981-86218000 | MS.gene45200:intron | 15.0% |
| !!! | TTTAAGGTTAAATATGTTTT+TGG | + | chr7.3:86217904-86217923 | MS.gene45200:intron | 15.0% |
| !! | AAGTTAATAAATACACCTTA+AGG | - | chr7.3:86217631-86217650 | None:intergenic | 20.0% |
| !! | AGAAATATAAACTTTCTGTA+CGG | + | chr7.3:86218343-86218362 | MS.gene45200:intron | 20.0% |
| !! | GCAAAATATTTCAGATATAA+AGG | + | chr7.3:86216863-86216882 | MS.gene45200:CDS | 20.0% |
| !! | TTAAAACATCAGGAATTAAA+TGG | - | chr7.3:86218619-86218638 | None:intergenic | 20.0% |
| !!! | AGAATAGTCCTTATTATTTT+AGG | - | chr7.3:86217992-86218011 | None:intergenic | 20.0% |
| !!! | ATTTGGTTGAATTTTTACTA+TGG | + | chr7.3:86218293-86218312 | MS.gene45200:intron | 20.0% |
| !!! | CAGAAAGTTTATATTTCTTT+TGG | - | chr7.3:86218341-86218360 | None:intergenic | 20.0% |
| !!! | CTATATAATTTGTGAAGATT+TGG | + | chr7.3:86218276-86218295 | MS.gene45200:intron | 20.0% |
| !!! | CTCAATTAATTTAAAACATC+AGG | - | chr7.3:86218629-86218648 | None:intergenic | 20.0% |
| !!! | GAATAGTCCTTATTATTTTA+GGG | - | chr7.3:86217991-86218010 | None:intergenic | 20.0% |
| !!! | TCTGAATATTCATTTTTCTT+GGG | + | chr7.3:86218666-86218685 | MS.gene45200:intron | 20.0% |
| !!! | TTCTGAATATTCATTTTTCT+TGG | + | chr7.3:86218665-86218684 | MS.gene45200:intron | 20.0% |
| ! | AATATTTCAGATATAAAGGC+TGG | + | chr7.3:86216867-86216886 | MS.gene45200:CDS | 25.0% |
| ! | GAAATATAAACTTTCTGTAC+GGG | + | chr7.3:86218344-86218363 | MS.gene45200:intron | 25.0% |
| ! | GCTTTCAAACAAAATGAAAA+AGG | - | chr7.3:86216927-86216946 | None:intergenic | 25.0% |
| ! | TAAGCAATAGGAATCAAATT+TGG | - | chr7.3:86218701-86218720 | None:intergenic | 25.0% |
| ! | TCAAAATCACGCAAAATATA+GGG | - | chr7.3:86217931-86217950 | None:intergenic | 25.0% |
| ! | TTCAAAATCACGCAAAATAT+AGG | - | chr7.3:86217932-86217951 | None:intergenic | 25.0% |
| !! | TTTAGGGTTAAATATGTTTG+TGG | - | chr7.3:86218039-86218058 | None:intergenic | 25.0% |
| !!! | ACATTTTAGAACAGTAGTTA+TGG | + | chr7.3:86218400-86218419 | MS.gene45200:intron | 25.0% |
| ACCTTCTAACAAAAACAAGT+GGG | - | chr7.3:86217590-86217609 | None:intergenic | 30.0% | |
| ATGTAGGGACTATTATTCAA+AGG | - | chr7.3:86217773-86217792 | None:intergenic | 30.0% | |
| CAAATCTAGTGACAGAATTA+AGG | + | chr7.3:86218792-86218811 | MS.gene45200:CDS | 30.0% | |
| CAATAGGAATCAAATTTGGT+GGG | - | chr7.3:86218697-86218716 | None:intergenic | 30.0% | |
| CATGGTTTCACAGAATATAA+AGG | - | chr7.3:86217290-86217309 | None:intergenic | 30.0% | |
| CCTTCTTTCTTCTGTATTAT+GGG | + | chr7.3:86216949-86216968 | MS.gene45200:intron | 30.0% | |
| GAACTTAAGAAACTTGTATC+TGG | + | chr7.3:86217107-86217126 | MS.gene45200:CDS | 30.0% | |
| GCAAGTGAATAACTAAAAAG+TGG | - | chr7.3:86217499-86217518 | None:intergenic | 30.0% | |
| TATATTCTGTGAAACCATGA+TGG | + | chr7.3:86217291-86217310 | MS.gene45200:intron | 30.0% | |
| TCCTTCTTTCTTCTGTATTA+TGG | + | chr7.3:86216948-86216967 | MS.gene45200:intron | 30.0% | |
| TGTAGGGACTATTATTCAAA+GGG | - | chr7.3:86217772-86217791 | None:intergenic | 30.0% | |
| TTATAGCAACATACACCTTA+AGG | + | chr7.3:86217613-86217632 | MS.gene45200:intron | 30.0% | |
| TTCACAGAATATAAAGGAGA+TGG | - | chr7.3:86217284-86217303 | None:intergenic | 30.0% | |
| ! | AAATGCCATTTGCAACATTA+GGG | - | chr7.3:86218593-86218612 | None:intergenic | 30.0% |
| ! | AATAGGAATCAAATTTGGTG+GGG | - | chr7.3:86218696-86218715 | None:intergenic | 30.0% |
| ! | ACTCCTTCTAAAAAGTAAGT+GGG | + | chr7.3:86217525-86217544 | MS.gene45200:intron | 30.0% |
| ! | TACTCCTTCTAAAAAGTAAG+TGG | + | chr7.3:86217524-86217543 | MS.gene45200:intron | 30.0% |
| ! | TGACTTGAAACTTTAGAGAT+TGG | - | chr7.3:86217336-86217355 | None:intergenic | 30.0% |
| !! | ACACTCTTTGATGATGTTAA+AGG | + | chr7.3:86217211-86217230 | MS.gene45200:intron | 30.0% |
| !! | CAACGACTAATTTTGATAAC+GGG | - | chr7.3:86217831-86217850 | None:intergenic | 30.0% |
| !! | GCAACGACTAATTTTGATAA+CGG | - | chr7.3:86217832-86217851 | None:intergenic | 30.0% |
| !! | TGCTTATCGATTTGTAGATT+CGG | + | chr7.3:86216985-86217004 | MS.gene45200:intron | 30.0% |
| !!! | AACGACTAATTTTGATAACG+GGG | - | chr7.3:86217830-86217849 | None:intergenic | 30.0% |
| AAGTGGTTAAATACACCCTA+AGG | - | chr7.3:86217482-86217501 | None:intergenic | 35.0% | |
| AAGTTTGCAGCCAAACATTA+AGG | + | chr7.3:86217028-86217047 | MS.gene45200:CDS | 35.0% | |
| ACAAAATGAAAAAGGCGAAG+AGG | - | chr7.3:86216919-86216938 | None:intergenic | 35.0% | |
| ACAGAATATAAAGGAGATGG+AGG | - | chr7.3:86217281-86217300 | None:intergenic | 35.0% | |
| ACCAATTCTTTGCGTTATCA+TGG | - | chr7.3:86217258-86217277 | None:intergenic | 35.0% | |
| ACTCCCACATAAAAACTAGT+GGG | - | chr7.3:86217442-86217461 | None:intergenic | 35.0% | |
| AGTTTGCAGCCAAACATTAA+GGG | + | chr7.3:86217029-86217048 | MS.gene45200:CDS | 35.0% | |
| ATTGCTAATCTGGCAAAAAC+AGG | + | chr7.3:86218720-86218739 | MS.gene45200:intron | 35.0% | |
| CAAAATGAAAAAGGCGAAGA+GGG | - | chr7.3:86216918-86216937 | None:intergenic | 35.0% | |
| CACCTTCTAACAAAAACAAG+TGG | - | chr7.3:86217591-86217610 | None:intergenic | 35.0% | |
| CCAGATTAGCAATAAGCAAT+AGG | - | chr7.3:86218713-86218732 | None:intergenic | 35.0% | |
| CCCATAATACAGAAGAAAGA+AGG | - | chr7.3:86216952-86216971 | None:intergenic | 35.0% | |
| CCTATTGCTTATTGCTAATC+TGG | + | chr7.3:86218710-86218729 | MS.gene45200:intron | 35.0% | |
| CGATTTGTAGATTCGGAAAA+TGG | + | chr7.3:86216992-86217011 | MS.gene45200:intron | 35.0% | |
| CTCTAACGGAAATTCTGATT+TGG | + | chr7.3:86217860-86217879 | MS.gene45200:intron | 35.0% | |
| GCAATAGGAATCAAATTTGG+TGG | - | chr7.3:86218698-86218717 | None:intergenic | 35.0% | |
| GTAGGGACTATTATTCAAAG+GGG | - | chr7.3:86217771-86217790 | None:intergenic | 35.0% | |
| GTGTTCTAGCAAATCCTATA+GGG | - | chr7.3:86217566-86217585 | None:intergenic | 35.0% | |
| TAAAGTTAGGAAGACAGTAG+AGG | + | chr7.3:86218243-86218262 | MS.gene45200:intron | 35.0% | |
| TCAAAGTCACGCAAAATGTA+GGG | + | chr7.3:86218012-86218031 | MS.gene45200:intron | 35.0% | |
| TCTCTTCAGACATTTCATGT+TGG | + | chr7.3:86218540-86218559 | MS.gene45200:intron | 35.0% | |
| TGGTCTCACATAACAATGAA+TGG | - | chr7.3:86217238-86217257 | None:intergenic | 35.0% | |
| TGTGTTCTAGCAAATCCTAT+AGG | - | chr7.3:86217567-86217586 | None:intergenic | 35.0% | |
| TGTTCTAGCAAATCCTATAG+GGG | - | chr7.3:86217565-86217584 | None:intergenic | 35.0% | |
| TTCAAAGTCACGCAAAATGT+AGG | + | chr7.3:86218011-86218030 | MS.gene45200:intron | 35.0% | |
| TTTAGCAAAGCTACACCTTA+GGG | + | chr7.3:86217464-86217483 | MS.gene45200:intron | 35.0% | |
| ! | ACCATGATAACGCAAAGAAT+TGG | + | chr7.3:86217254-86217273 | MS.gene45200:intron | 35.0% |
| ! | AGAAGTACACCCTTAATGTT+TGG | - | chr7.3:86217041-86217060 | None:intergenic | 35.0% |
| ! | CGTTGCTGTTAATTCTCTAA+CGG | + | chr7.3:86217846-86217865 | MS.gene45200:intron | 35.0% |
| ! | GAAATGCCATTTGCAACATT+AGG | - | chr7.3:86218594-86218613 | None:intergenic | 35.0% |
| ! | TTTTAGCAAAGCTACACCTT+AGG | + | chr7.3:86217463-86217482 | MS.gene45200:intron | 35.0% |
| !! | AATTCTGATTTGGCAGTTAG+TGG | + | chr7.3:86217870-86217889 | MS.gene45200:intron | 35.0% |
| !! | AGTGGGTCCCAATTATTTTA+AGG | + | chr7.3:86217888-86217907 | MS.gene45200:intron | 35.0% |
| !! | AGTGGGTCCCAATTATTTTA+GGG | - | chr7.3:86217907-86217888 | None:intergenic | 35.0% |
| !! | ATTCTGATTTGGCAGTTAGT+GGG | + | chr7.3:86217871-86217890 | MS.gene45200:intron | 35.0% |
| !! | TAGTGGGTCCCAATTATTTT+AGG | - | chr7.3:86217906-86217887 | None:intergenic | 35.0% |
| !!! | ACACCCACTAGTTTTTATGT+GGG | + | chr7.3:86217436-86217455 | MS.gene45200:intron | 35.0% |
| !!! | ACACCCACTTACTTTTTAGA+AGG | - | chr7.3:86217531-86217550 | None:intergenic | 35.0% |
| !!! | ACCCACTTGTTTTTGTTAGA+AGG | + | chr7.3:86217586-86217605 | MS.gene45200:intron | 35.0% |
| CACTCCCACATAAAAACTAG+TGG | - | chr7.3:86217443-86217462 | None:intergenic | 40.0% | |
| CAGGAGAACAATGTTGGAAA+CGG | + | chr7.3:86218819-86218838 | MS.gene45200:CDS | 40.0% | |
| CTGATTCCAACAACATATCC+CGG | - | chr7.3:86217151-86217170 | None:intergenic | 40.0% | |
| CTTCAGACATTTCATGTTGG+TGG | + | chr7.3:86218543-86218562 | MS.gene45200:intron | 40.0% | |
| GAGAACGGAGATAAAATGTG+AGG | + | chr7.3:86218125-86218144 | MS.gene45200:intron | 40.0% | |
| GATTCGGAAAATGGATCTTG+AGG | + | chr7.3:86217001-86217020 | MS.gene45200:intron | 40.0% | |
| GCATCCCGTTAGAGAATTAA+CGG | + | chr7.3:86218088-86218107 | MS.gene45200:intron | 40.0% | |
| GCTGAGAATGCAAATCTTGA+AGG | - | chr7.3:86218864-86218883 | None:intergenic | 40.0% | |
| GTAGGGACTATTCTTCAAAG+AGG | + | chr7.3:86218171-86218190 | MS.gene45200:intron | 40.0% | |
| GTGTACTTCTTGCTAAGTTG+CGG | + | chr7.3:86217051-86217070 | MS.gene45200:CDS | 40.0% | |
| TATAAAGGCTGGAATCGATG+AGG | + | chr7.3:86216878-86216897 | MS.gene45200:CDS | 40.0% | |
| TATGTTGTTGGAATCAGGCA+TGG | + | chr7.3:86217154-86217173 | MS.gene45200:CDS | 40.0% | |
| TGATTCCAACAACATATCCC+GGG | - | chr7.3:86217150-86217169 | None:intergenic | 40.0% | |
| TGTACTTCTTGCTAAGTTGC+GGG | + | chr7.3:86217052-86217071 | MS.gene45200:CDS | 40.0% | |
| TTGAGCCCTAATGTTGCAAA+TGG | + | chr7.3:86218585-86218604 | MS.gene45200:intron | 40.0% | |
| ! | AAATCCTATAGGGGTTTGCT+AGG | - | chr7.3:86217556-86217575 | None:intergenic | 40.0% |
| ! | TCAAAGAGGCGCAAAATGTA+AGG | + | chr7.3:86218185-86218204 | MS.gene45200:intron | 40.0% |
| !! | GATAACGGGGATAAAATGTG+AGG | - | chr7.3:86217817-86217836 | None:intergenic | 40.0% |
| !! | GCAGGGACTAATTTTGAGAA+CGG | + | chr7.3:86218110-86218129 | MS.gene45200:intron | 40.0% |
| !!! | CACACCCACTAGTTTTTATG+TGG | + | chr7.3:86217435-86217454 | MS.gene45200:intron | 40.0% |
| AAACCATGATGGCTACGTAC+TGG | + | chr7.3:86217302-86217321 | MS.gene45200:intron | 45.0% | |
| AATCGATGAGGCAGAAGCTT+TGG | + | chr7.3:86216890-86216909 | MS.gene45200:CDS | 45.0% | |
| ATGCTGATGTGGCAGTTAGT+GGG | - | chr7.3:86218072-86218091 | None:intergenic | 45.0% | |
| ATGTTGGAAACGGAAGAGCT+TGG | + | chr7.3:86218829-86218848 | MS.gene45200:CDS | 45.0% | |
| CCCTGCCGTTAATTCTCTAA+CGG | - | chr7.3:86218096-86218115 | None:intergenic | 45.0% | |
| CCGTTAGAGAATTAACGGCA+GGG | + | chr7.3:86218093-86218112 | MS.gene45200:intron | 45.0% | |
| CCTGCCGTTAATTCTCTAAC+GGG | - | chr7.3:86218095-86218114 | None:intergenic | 45.0% | |
| CGGGATATGTTGTTGGAATC+AGG | + | chr7.3:86217149-86217168 | MS.gene45200:CDS | 45.0% | |
| GTATCCTAGCAAACCCCTAT+AGG | + | chr7.3:86217549-86217568 | MS.gene45200:intron | 45.0% | |
| GTGACAGAATTAAGGACAGC+AGG | + | chr7.3:86218800-86218819 | MS.gene45200:CDS | 45.0% | |
| TGTTGGAAACGGAAGAGCTT+GGG | + | chr7.3:86218830-86218849 | MS.gene45200:CDS | 45.0% | |
| !! | CATGTTGGTGGTGCACAAAA+TGG | + | chr7.3:86218555-86218574 | MS.gene45200:intron | 45.0% |
| !!! | TCTTTTGGTGTTTGCCTCAC+TGG | - | chr7.3:86218326-86218345 | None:intergenic | 45.0% |
| !! | ATATATATATATATATATGT+GGG | - | chr7.3:86217679-86217698 | None:intergenic | 5.0% |
| !! | TATATATATATATATATATG+TGG | - | chr7.3:86217680-86217699 | None:intergenic | 5.0% |
| AACAACATATCCCGGGCAGA+GGG | - | chr7.3:86217143-86217162 | None:intergenic | 50.0% | |
| AAGCCAGTACGTAGCCATCA+TGG | - | chr7.3:86217308-86217327 | None:intergenic | 50.0% | |
| ACTATGGACTCCTTCCAGTG+AGG | + | chr7.3:86218309-86218328 | MS.gene45200:intron | 50.0% | |
| AGGCATGGCAGATGCTATGA+CGG | + | chr7.3:86217169-86217188 | MS.gene45200:CDS | 50.0% | |
| CCCGTTAGAGAATTAACGGC+AGG | + | chr7.3:86218092-86218111 | MS.gene45200:intron | 50.0% | |
| GATGCTGATGTGGCAGTTAG+TGG | - | chr7.3:86218073-86218092 | None:intergenic | 50.0% | |
| GGACAGCAGGAGAACAATGT+TGG | + | chr7.3:86218813-86218832 | MS.gene45200:CDS | 50.0% | |
| GTTGGAAACGGAAGAGCTTG+GGG | + | chr7.3:86218831-86218850 | MS.gene45200:CDS | 50.0% | |
| TCTCTAACGGGATGCTGATG+TGG | - | chr7.3:86218083-86218102 | None:intergenic | 50.0% | |
| ! | TTGGTGTTTGCCTCACTGGA+AGG | - | chr7.3:86218322-86218341 | None:intergenic | 50.0% |
| ACAACATATCCCGGGCAGAG+GGG | - | chr7.3:86217142-86217161 | None:intergenic | 55.0% | |
| CAACAACATATCCCGGGCAG+AGG | - | chr7.3:86217144-86217163 | None:intergenic | 55.0% | |
| CTCTGCCCGGGATATGTTGT+TGG | + | chr7.3:86217142-86217161 | MS.gene45200:CDS | 55.0% | |
| GTAACATGAACCCCTCTGCC+CGG | + | chr7.3:86217129-86217148 | MS.gene45200:CDS | 55.0% | |
| TAACATGAACCCCTCTGCCC+GGG | + | chr7.3:86217130-86217149 | MS.gene45200:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 86216853 | 86218912 | 86216853 | ID=MS.gene45200 |
| chr7.3 | mRNA | 86216853 | 86218912 | 86216853 | ID=MS.gene45200.t1;Parent=MS.gene45200 |
| chr7.3 | exon | 86216853 | 86216911 | 86216853 | ID=MS.gene45200.t1.exon1;Parent=MS.gene45200.t1 |
| chr7.3 | CDS | 86216853 | 86216911 | 86216853 | ID=cds.MS.gene45200.t1;Parent=MS.gene45200.t1 |
| chr7.3 | exon | 86217002 | 86217190 | 86217002 | ID=MS.gene45200.t1.exon2;Parent=MS.gene45200.t1 |
| chr7.3 | CDS | 86217002 | 86217190 | 86217002 | ID=cds.MS.gene45200.t1;Parent=MS.gene45200.t1 |
| chr7.3 | exon | 86218742 | 86218912 | 86218742 | ID=MS.gene45200.t1.exon3;Parent=MS.gene45200.t1 |
| chr7.3 | CDS | 86218742 | 86218912 | 86218742 | ID=cds.MS.gene45200.t1;Parent=MS.gene45200.t1 |
| Gene Sequence |
| Protein sequence |
