AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050820.t1 MTR_7g111050 90.452 199 14 3 9 207 163 356 7.41e-129 367
MS.gene050820.t1 MTR_7g111060 82.412 199 30 3 9 207 166 359 2.64e-116 335
MS.gene050820.t1 MTR_7g111050 86.806 144 14 3 9 152 158 296 2.25e-85 254
MS.gene050820.t1 MTR_4g071060 29.121 182 95 7 10 183 198 353 4.45e-13 67.4
MS.gene050820.t1 MTR_7g079230 27.461 193 92 8 13 193 184 340 8.20e-13 66.2
MS.gene050820.t1 MTR_1g023210 27.473 182 98 7 10 183 202 357 1.82e-12 65.5
MS.gene050820.t1 MTR_4g094918 31.551 187 83 11 13 187 187 340 4.51e-12 64.3
MS.gene050820.t1 MTR_4g125300 29.885 174 99 6 6 178 189 340 2.84e-11 62.0
MS.gene050820.t1 MTR_7g079130 34.118 85 46 2 104 178 5 89 6.01e-11 57.4
MS.gene050820.t1 MTR_7g078600 27.083 192 92 8 13 192 186 341 7.35e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050820.t1 AT1G02305 70.312 192 52 3 9 200 169 355 5.15e-95 281
MS.gene050820.t1 AT1G02300 68.750 192 55 2 9 200 186 372 3.08e-94 280
MS.gene050820.t1 AT4G01610 69.189 185 52 3 10 194 167 346 2.95e-89 266
MS.gene050820.t1 AT4G01610 69.189 185 52 3 10 194 167 346 3.29e-89 266
MS.gene050820.t1 AT1G29080 31.250 160 84 5 13 171 192 326 4.81e-14 70.1
MS.gene050820.t1 AT4G39090 27.322 183 97 7 10 183 202 357 6.76e-12 63.9
MS.gene050820.t1 AT3G45310 31.429 175 95 7 6 178 197 348 2.81e-11 62.0
MS.gene050820.t1 AT2G21430 27.473 182 98 8 10 183 199 354 6.31e-11 61.2
MS.gene050820.t1 AT3G49340 27.746 173 90 7 13 178 188 332 8.36e-11 60.8

Find 62 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGTGGGGCTGGCTGTGC+TGG 0.064086 7.4:+5087730 MS.gene050820:CDS
CAAATCAGTGGAATACAAAT+TGG 0.198746 7.4:+5090016 MS.gene050820:CDS
TCTGTGGGGCTGGCTGTGCT+GGG 0.258087 7.4:+5087731 MS.gene050820:CDS
CAACCAATTTGATCAAAGTA+TGG 0.270755 7.4:-5087897 None:intergenic
TGTGGGGCTGGCTGTGCTGG+GGG 0.275457 7.4:+5087733 MS.gene050820:CDS
CTGTGGGGCTGGCTGTGCTG+GGG 0.311853 7.4:+5087732 MS.gene050820:CDS
AAACTTCTGCCATGATATCT+TGG 0.322656 7.4:-5088046 None:intergenic
GTGATGAAGGGGAGGACTAT+TGG 0.337515 7.4:+5089877 MS.gene050820:CDS
TTTAACACACTTTGGAGTTC+GGG 0.350464 7.4:-5087946 None:intergenic
CTCATTACAAATCAGGAATA+CGG 0.357027 7.4:+5089806 MS.gene050820:intron
GCTGTGGCCTTCTGTGGGGC+TGG 0.367498 7.4:+5087721 MS.gene050820:CDS
GACCCATACTTTGATCAAAT+TGG 0.371892 7.4:+5087894 MS.gene050820:CDS
AACTTCTGCCATGATATCTT+GGG 0.374044 7.4:-5088045 None:intergenic
TGCATGCTGTGGCCTTCTGT+GGG 0.392602 7.4:+5087716 MS.gene050820:CDS
TGATGAAGGGGAGGACTATT+GGG 0.393148 7.4:+5089878 MS.gene050820:CDS
GTGTAAACGGGAACCAGCTT+TGG 0.396739 7.4:+5087973 MS.gene050820:CDS
AAATCAGTGGAATACAAATT+GGG 0.397422 7.4:+5090017 MS.gene050820:CDS
GTGGGGCTGGCTGTGCTGGG+GGG 0.401183 7.4:+5087734 MS.gene050820:CDS
ACAGTGAATGCAACTTCAAC+TGG 0.421691 7.4:-5088080 None:intergenic
CACTTTGGAGTTCGGGATGT+TGG 0.423838 7.4:-5087939 None:intergenic
AGTTGCATTCACTGTTTATG+AGG 0.432565 7.4:+5088088 MS.gene050820:CDS
CAAATTGGTTGTTCTCATCC+TGG 0.432865 7.4:+5087909 MS.gene050820:CDS
AAAACGTAAAATTCAACATC+TGG 0.439324 7.4:+5088865 MS.gene050820:CDS
ATTTGGACTTAGGAGGCGTT+TGG 0.441634 7.4:+5088825 MS.gene050820:intron
CTATAGTGTCAAAGCATATA+CGG 0.446963 7.4:+5088010 MS.gene050820:CDS
GGGTGGGGAACAAGTGATGA+AGG 0.447373 7.4:+5089864 MS.gene050820:CDS
TGGCAGAAGTTTATAAGAAC+GGG 0.447542 7.4:+5088057 MS.gene050820:CDS
TGTAAACGGGAACCAGCTTT+GGG 0.454609 7.4:+5087974 MS.gene050820:CDS
TAAGTATATCCATGCAGAAA+AGG 0.458332 7.4:-5087761 None:intergenic
TTGCATGCTGTGGCCTTCTG+TGG 0.462486 7.4:+5087715 MS.gene050820:CDS
GGTCATGCAGTAAAGCTGAT+TGG 0.466430 7.4:+5089843 MS.gene050820:CDS
CTCTGATCCCCAAGATATCA+TGG 0.475002 7.4:+5088037 MS.gene050820:CDS
GTCATGCAGTAAAGCTGATT+GGG 0.475389 7.4:+5089844 MS.gene050820:CDS
ATTGAAAATGCTGTTACTGC+TGG 0.484742 7.4:+5090177 MS.gene050820:CDS
GTGGGGAACAAGTGATGAAG+GGG 0.496359 7.4:+5089866 MS.gene050820:CDS
GCTTTGAAGTCTCCCAAAGC+TGG 0.502118 7.4:-5087986 None:intergenic
CGGGATGTTGGCTCACAACC+AGG 0.502936 7.4:-5087927 None:intergenic
AAGTATATCCATGCAGAAAA+GGG 0.512374 7.4:-5087760 None:intergenic
TCATTACAAATCAGGAATAC+GGG 0.522613 7.4:+5089807 MS.gene050820:intron
TTCAGCTTCTTGCAAATCAG+TGG 0.527306 7.4:+5090004 MS.gene050820:intron
AGCACAGCCAGCCCCACAGA+AGG 0.528482 7.4:-5087728 None:intergenic
GCAGTAAAGCTGATTGGGTG+GGG 0.530066 7.4:+5089849 MS.gene050820:CDS
AACCAATTTGATCAAAGTAT+GGG 0.556250 7.4:-5087896 None:intergenic
AATGACATTCTTGCATGCTG+TGG 0.558753 7.4:+5087705 None:intergenic
GGTGGGGAACAAGTGATGAA+GGG 0.560873 7.4:+5089865 MS.gene050820:CDS
TGCAGTAAAGCTGATTGGGT+GGG 0.561138 7.4:+5089848 MS.gene050820:CDS
AAGAGAGGGACAAACGAATG+TGG 0.568375 7.4:+5090153 MS.gene050820:CDS
ATGGCAGAAGTTTATAAGAA+CGG 0.582738 7.4:+5088056 MS.gene050820:CDS
AATCAGTGGAATACAAATTG+GGG 0.590727 7.4:+5090018 MS.gene050820:CDS
AGAGAGGGACAAACGAATGT+GGG 0.604399 7.4:+5090154 MS.gene050820:CDS
CCATGGCGTTGTCACTGAAG+AGG 0.611230 7.4:+5087789 MS.gene050820:CDS
ATGCAGTAAAGCTGATTGGG+TGG 0.614866 7.4:+5089847 MS.gene050820:CDS
ACTTCTGCCATGATATCTTG+GGG 0.630244 7.4:-5088044 None:intergenic
GCATGCTGTGGCCTTCTGTG+GGG 0.633492 7.4:+5087717 MS.gene050820:CDS
GGTTACTTCAAAATCAAGAG+AGG 0.633977 7.4:+5090138 MS.gene050820:CDS
GTTACTTCAAAATCAAGAGA+GGG 0.637658 7.4:+5090139 MS.gene050820:CDS
CCTCTTCAGTGACAACGCCA+TGG 0.643016 7.4:-5087789 None:intergenic
ATCAGTGGAATACAAATTGG+GGG 0.645008 7.4:+5090019 MS.gene050820:CDS
GGGAACAAGTGATGAAGGGG+AGG 0.645737 7.4:+5089869 MS.gene050820:CDS
TGTGAGAGAGGTGACTGACA+TGG 0.665810 7.4:+5090221 MS.gene050820:CDS
TCAGTGGAATACAAATTGGG+GGG 0.666680 7.4:+5090020 MS.gene050820:CDS
TGGATATACTTAGCTCACCA+TGG 0.685365 7.4:+5087772 MS.gene050820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATAAAGAAATGAAATAAA+AGG - chr7.4:5089589-5089608 None:intergenic 15.0%
!!! ATATTGTTTAGTTTGTATTT+AGG + chr7.4:5088992-5089011 MS.gene050820:intron 15.0%
!!! CGAAATTTAATTTTCAATAA+AGG + chr7.4:5088589-5088608 MS.gene050820:intron 15.0%
!! AAAATTTATTTGCAAAAGGA+CGG - chr7.4:5088131-5088150 None:intergenic 20.0%
!! AAATACCTTATATGAAGTAT+TGG + chr7.4:5088383-5088402 MS.gene050820:intron 20.0%
!! TATATACAATTCCATCTAAT+TGG - chr7.4:5089079-5089098 None:intergenic 20.0%
!! TTCAGATAAAAAAAACTAGA+AGG - chr7.4:5089044-5089063 None:intergenic 20.0%
!!! AAGATCTGTATATATTCTTT+TGG + chr7.4:5088264-5088283 MS.gene050820:intron 20.0%
!!! ATAAGGTATTTTATACTTCA+TGG - chr7.4:5088374-5088393 None:intergenic 20.0%
!!! TTTTACCAATACTTCATATA+AGG - chr7.4:5088391-5088410 None:intergenic 20.0%
! AAAACGTAAAATTCAACATC+TGG + chr7.4:5088865-5088884 MS.gene050820:CDS 25.0%
! AAATCAGTGGAATACAAATT+GGG + chr7.4:5090017-5090036 MS.gene050820:CDS 25.0%
! AAATTTATTTGCAAAAGGAC+GGG - chr7.4:5088130-5088149 None:intergenic 25.0%
! AACCAATTTGATCAAAGTAT+GGG - chr7.4:5087899-5087918 None:intergenic 25.0%
! AAGAAATGAAACAAAACGAA+AGG - chr7.4:5089375-5089394 None:intergenic 25.0%
! AAGACAATGATAATAGATTG+TGG + chr7.4:5088167-5088186 MS.gene050820:intron 25.0%
! AGACAATGATAATAGATTGT+GGG + chr7.4:5088168-5088187 MS.gene050820:intron 25.0%
! ATAAGGCTATAATCAGATTA+TGG + chr7.4:5089171-5089190 MS.gene050820:intron 25.0%
! CTTAACTTATCCTATATGAT+TGG + chr7.4:5088527-5088546 MS.gene050820:intron 25.0%
! GAAAATCTAGATGTTCAATA+AGG + chr7.4:5089154-5089173 MS.gene050820:intron 25.0%
! GCAGAAAATTTATTTGCAAA+AGG - chr7.4:5088135-5088154 None:intergenic 25.0%
! TACAGATCTTTATCCTAAAA+AGG - chr7.4:5088254-5088273 None:intergenic 25.0%
! TGAAAATTAAATTTCGCCTT+CGG - chr7.4:5088585-5088604 None:intergenic 25.0%
! TGAAATTGTTGTCTAATATC+AGG - chr7.4:5089929-5089948 None:intergenic 25.0%
! TGGATTATAAAATTAGACTG+TGG + chr7.4:5088297-5088316 MS.gene050820:intron 25.0%
! TTCATATTATTCCAGTCTAT+CGG - chr7.4:5089237-5089256 None:intergenic 25.0%
!! ATCTTTTAATGTTTTTCCCT+TGG + chr7.4:5089605-5089624 MS.gene050820:intron 25.0%
!! ATGTTGAATTTTACGTTTTC+TGG - chr7.4:5088864-5088883 None:intergenic 25.0%
!! GCTTAACTATAAACCTTTTT+AGG + chr7.4:5088238-5088257 MS.gene050820:intron 25.0%
!! TGTGTTAAAAAGTGTGTAAA+CGG + chr7.4:5087960-5087979 MS.gene050820:CDS 25.0%
!! TGTTGAATTTTACGTTTTCT+GGG - chr7.4:5088863-5088882 None:intergenic 25.0%
!!! AGTTCACTTTTATTATTGAG+AGG + chr7.4:5088503-5088522 MS.gene050820:intron 25.0%
!!! TTTTGCTATATTTAGCTGTT+GGG - chr7.4:5088673-5088692 None:intergenic 25.0%
AAGAGTCAAAGTTATGCAAA+AGG - chr7.4:5089764-5089783 None:intergenic 30.0%
AAGTAAAGACCTAGCTAAAT+TGG - chr7.4:5088950-5088969 None:intergenic 30.0%
AAGTATATCCATGCAGAAAA+GGG - chr7.4:5087763-5087782 None:intergenic 30.0%
AAGTTAATCTACTAAACTGC+AGG + chr7.4:5090113-5090132 MS.gene050820:intron 30.0%
AATCAGTGGAATACAAATTG+GGG + chr7.4:5090018-5090037 MS.gene050820:CDS 30.0%
AGAAAAACCTTAGAGAGAAA+AGG + chr7.4:5088890-5088909 MS.gene050820:intron 30.0%
ATATGTGTGAAGGAGATATA+TGG - chr7.4:5089544-5089563 None:intergenic 30.0%
ATGGCAGAAGTTTATAAGAA+CGG + chr7.4:5088056-5088075 MS.gene050820:CDS 30.0%
ATTACATTGGATTTGGACTT+AGG + chr7.4:5088815-5088834 MS.gene050820:intron 30.0%
CAAAGTCTCAGATATTACAT+TGG + chr7.4:5088802-5088821 MS.gene050820:intron 30.0%
CAAATCAGTGGAATACAAAT+TGG + chr7.4:5090016-5090035 MS.gene050820:CDS 30.0%
CAACCAATTTGATCAAAGTA+TGG - chr7.4:5087900-5087919 None:intergenic 30.0%
CACAAATCTAATATGTGTGA+AGG - chr7.4:5089554-5089573 None:intergenic 30.0%
CTATAGTGTCAAAGCATATA+CGG + chr7.4:5088010-5088029 MS.gene050820:CDS 30.0%
CTCAGATATTACATTGGATT+TGG + chr7.4:5088808-5088827 MS.gene050820:intron 30.0%
CTCATTACAAATCAGGAATA+CGG + chr7.4:5089806-5089825 MS.gene050820:intron 30.0%
GAAAAACCTTAGAGAGAAAA+GGG + chr7.4:5088891-5088910 MS.gene050820:intron 30.0%
GGTAAAAGTTGAAAAATGAG+CGG + chr7.4:5088404-5088423 MS.gene050820:intron 30.0%
GTTACTTCAAAATCAAGAGA+GGG + chr7.4:5090139-5090158 MS.gene050820:CDS 30.0%
TAAGTATATCCATGCAGAAA+AGG - chr7.4:5087764-5087783 None:intergenic 30.0%
TAATTTCCAAAGCAATAGCT+AGG - chr7.4:5088458-5088477 None:intergenic 30.0%
TACCAAAAATATTGTGAGAG+AGG + chr7.4:5090209-5090228 MS.gene050820:CDS 30.0%
TCAAAGTTATGCAAAAGGAT+AGG - chr7.4:5089759-5089778 None:intergenic 30.0%
TCATTACAAATCAGGAATAC+GGG + chr7.4:5089807-5089826 MS.gene050820:intron 30.0%
TGCATATGTTACCAATTAGA+TGG + chr7.4:5089065-5089084 MS.gene050820:intron 30.0%
! AACAAATTTTCATTCTCGCT+TGG + chr7.4:5087813-5087832 MS.gene050820:intron 30.0%
! ATTCTTTTGGCAGATTATGT+TGG + chr7.4:5088277-5088296 MS.gene050820:intron 30.0%
! GATTTTGCTCATTACAAATC+AGG + chr7.4:5089799-5089818 MS.gene050820:intron 30.0%
! GTGTTAAAAAGTGTGTAAAC+GGG + chr7.4:5087961-5087980 MS.gene050820:CDS 30.0%
! GTTGAATTTTACGTTTTCTG+GGG - chr7.4:5088862-5088881 None:intergenic 30.0%
!! ACACACTTTTTAACACACTT+TGG - chr7.4:5087957-5087976 None:intergenic 30.0%
!! GTTTTGCTATATTTAGCTGT+TGG - chr7.4:5088674-5088693 None:intergenic 30.0%
!!! CTCACAATATTTTTGGTAGA+AGG - chr7.4:5090207-5090226 None:intergenic 30.0%
!!! TTTTAACACACTTTGGAGTT+CGG - chr7.4:5087950-5087969 None:intergenic 30.0%
AAACCCAAACAAGAGTAACA+GGG - chr7.4:5089444-5089463 None:intergenic 35.0%
AAACTTCTGCCATGATATCT+TGG - chr7.4:5088049-5088068 None:intergenic 35.0%
AACTTCTGCCATGATATCTT+GGG - chr7.4:5088048-5088067 None:intergenic 35.0%
AAGGAGCAACATAAGACAAT+GGG - chr7.4:5089491-5089510 None:intergenic 35.0%
AATGAGCAAAATCCTGTCAA+GGG - chr7.4:5089792-5089811 None:intergenic 35.0%
AGATATTTCGACAAGCTTGA+GGG + chr7.4:5088695-5088714 MS.gene050820:intron 35.0%
AGTTGCATTCACTGTTTATG+AGG + chr7.4:5088088-5088107 MS.gene050820:CDS 35.0%
ATATGGCATATCCGATAACA+TGG - chr7.4:5089527-5089546 None:intergenic 35.0%
ATCAGTGGAATACAAATTGG+GGG + chr7.4:5090019-5090038 MS.gene050820:CDS 35.0%
ATCCACAAACATTGACAGAA+AGG - chr7.4:5089730-5089749 None:intergenic 35.0%
ATTGAAAATGCTGTTACTGC+TGG + chr7.4:5090177-5090196 MS.gene050820:CDS 35.0%
CAATGATAATAGATTGTGGG+AGG + chr7.4:5088171-5088190 MS.gene050820:intron 35.0%
CCTATATGATTGGATGAGTT+GGG + chr7.4:5088537-5088556 MS.gene050820:intron 35.0%
GACCCATACTTTGATCAAAT+TGG + chr7.4:5087894-5087913 MS.gene050820:CDS 35.0%
GGTCACATATCAACTATTGT+TGG - chr7.4:5089354-5089373 None:intergenic 35.0%
GGTTACTTCAAAATCAAGAG+AGG + chr7.4:5090138-5090157 MS.gene050820:CDS 35.0%
TAAAGACCTAGCTAAATTGG+AGG - chr7.4:5088947-5088966 None:intergenic 35.0%
TAATCTACTAAACTGCAGGA+TGG + chr7.4:5090117-5090136 MS.gene050820:intron 35.0%
TAATGAGCAAAATCCTGTCA+AGG - chr7.4:5089793-5089812 None:intergenic 35.0%
TAGATATTTCGACAAGCTTG+AGG + chr7.4:5088694-5088713 MS.gene050820:intron 35.0%
TAGCTAGGTCTTTACTTCAA+AGG + chr7.4:5088953-5088972 MS.gene050820:intron 35.0%
TCCTATATGATTGGATGAGT+TGG + chr7.4:5088536-5088555 MS.gene050820:intron 35.0%
TGGCAGAAGTTTATAAGAAC+GGG + chr7.4:5088057-5088076 MS.gene050820:CDS 35.0%
TTGAAGATGCAGATTGACAT+AGG + chr7.4:5089665-5089684 MS.gene050820:intron 35.0%
! CACCTCTCTCACAATATTTT+TGG - chr7.4:5090214-5090233 None:intergenic 35.0%
! GGAGCTTGTCATTTCTTAAT+TGG - chr7.4:5089333-5089352 None:intergenic 35.0%
!! AATGTTTTTCCCTTGGTTCT+CGG + chr7.4:5089612-5089631 MS.gene050820:intron 35.0%
!! TTTAACACACTTTGGAGTTC+GGG - chr7.4:5087949-5087968 None:intergenic 35.0%
!!! CACAACTGATTTTAAAGCAG+CGG + chr7.4:5089104-5089123 MS.gene050820:intron 35.0%
AAACCTTAGAGAGAAAAGGG+AGG + chr7.4:5088894-5088913 MS.gene050820:intron 40.0%
AAAGCACAAGAGATGACAAC+TGG - chr7.4:5089647-5089666 None:intergenic 40.0%
AACCTTAGAGAGAAAAGGGA+GGG + chr7.4:5088895-5088914 MS.gene050820:intron 40.0%
ACAGTGAATGCAACTTCAAC+TGG - chr7.4:5088083-5088102 None:intergenic 40.0%
ACATTGGATTTGGACTTAGG+AGG + chr7.4:5088818-5088837 MS.gene050820:intron 40.0%
ACTTCTGCCATGATATCTTG+GGG - chr7.4:5088047-5088066 None:intergenic 40.0%
ATAAGACAATGGGAGAACTG+AGG - chr7.4:5089481-5089500 None:intergenic 40.0%
CAAACCCAAACAAGAGTAAC+AGG - chr7.4:5089445-5089464 None:intergenic 40.0%
CAAATTGGTTGTTCTCATCC+TGG + chr7.4:5087909-5087928 MS.gene050820:CDS 40.0%
CAGATCATAAGAAAGAGCCT+AGG - chr7.4:5087849-5087868 None:intergenic 40.0%
CAGTGAAAAGCAACAAAGTC+AGG - chr7.4:5089983-5090002 None:intergenic 40.0%
CCAAAACAGAAACCTAGAGT+CGG + chr7.4:5089284-5089303 MS.gene050820:intron 40.0%
CCCAACTCATCCAATCATAT+AGG - chr7.4:5088540-5088559 None:intergenic 40.0%
CGCTTGGAGAATAAAATCCT+AGG + chr7.4:5087829-5087848 MS.gene050820:intron 40.0%
GAAGGAGCAACATAAGACAA+TGG - chr7.4:5089492-5089511 None:intergenic 40.0%
GACCTTTCTGTCAATGTTTG+TGG + chr7.4:5089725-5089744 MS.gene050820:intron 40.0%
GCAAATCCTCCAATTTAGCT+AGG + chr7.4:5088938-5088957 MS.gene050820:intron 40.0%
GTCATGCAGTAAAGCTGATT+GGG + chr7.4:5089844-5089863 MS.gene050820:CDS 40.0%
TCAGTGGAATACAAATTGGG+GGG + chr7.4:5090020-5090039 MS.gene050820:CDS 40.0%
TGGATATACTTAGCTCACCA+TGG + chr7.4:5087772-5087791 MS.gene050820:CDS 40.0%
TTCAGCTTCTTGCAAATCAG+TGG + chr7.4:5090004-5090023 MS.gene050820:intron 40.0%
TTCCAAAGCAATAGCTAGGT+TGG - chr7.4:5088454-5088473 None:intergenic 40.0%
TTCCAACCTAGCTATTGCTT+TGG + chr7.4:5088449-5088468 MS.gene050820:intron 40.0%
TTCCTTCTGTGCCATGTTAT+CGG + chr7.4:5089513-5089532 MS.gene050820:intron 40.0%
TTCTCCCTGTTACTCTTGTT+TGG + chr7.4:5089437-5089456 MS.gene050820:intron 40.0%
TTTGCAAGAACAAAGACCGA+AGG + chr7.4:5088566-5088585 MS.gene050820:intron 40.0%
! ATTGGTAGCAAACTACCCTA+TGG - chr7.4:5089315-5089334 None:intergenic 40.0%
! CAATAGCTAGGTTGGAATGA+CGG - chr7.4:5088446-5088465 None:intergenic 40.0%
! TCTCCCTGTTACTCTTGTTT+GGG + chr7.4:5089438-5089457 MS.gene050820:intron 40.0%
! TTGGTAGCAAACTACCCTAT+GGG - chr7.4:5089314-5089333 None:intergenic 40.0%
!!! TTACGTTTTCTGGGGTAACA+TGG - chr7.4:5088854-5088873 None:intergenic 40.0%
AAGAGAGGGACAAACGAATG+TGG + chr7.4:5090153-5090172 MS.gene050820:CDS 45.0%
ACCTTAGAGAGAAAAGGGAG+GGG + chr7.4:5088896-5088915 MS.gene050820:intron 45.0%
ACTTCGACATGCACTTGCAT+TGG + chr7.4:5089205-5089224 MS.gene050820:intron 45.0%
AGAGAGGGACAAACGAATGT+GGG + chr7.4:5090154-5090173 MS.gene050820:CDS 45.0%
AGTAACAGGGAGAAGCAACA+AGG - chr7.4:5089431-5089450 None:intergenic 45.0%
ATCCGATAACATGGCACAGA+AGG - chr7.4:5089518-5089537 None:intergenic 45.0%
ATGCAAGTGCATGTCGAAGT+TGG - chr7.4:5089205-5089224 None:intergenic 45.0%
ATGCAGTAAAGCTGATTGGG+TGG + chr7.4:5089847-5089866 MS.gene050820:CDS 45.0%
CTAGAGTCGGTATACCCATA+GGG + chr7.4:5089297-5089316 MS.gene050820:intron 45.0%
CTCTGATCCCCAAGATATCA+TGG + chr7.4:5088037-5088056 MS.gene050820:CDS 45.0%
CTTCGACATGCACTTGCATT+GGG + chr7.4:5089206-5089225 MS.gene050820:intron 45.0%
GAAGAGAGAGAGTCAATGCA+TGG + chr7.4:5088739-5088758 MS.gene050820:intron 45.0%
GATAACATGGCACAGAAGGA+AGG - chr7.4:5089514-5089533 None:intergenic 45.0%
GATCAAAGTATGGGTCACAC+TGG - chr7.4:5087890-5087909 None:intergenic 45.0%
GGTCATGCAGTAAAGCTGAT+TGG + chr7.4:5089843-5089862 MS.gene050820:CDS 45.0%
GTAACAGGGAGAAGCAACAA+GGG - chr7.4:5089430-5089449 None:intergenic 45.0%
TGATGAAGGGGAGGACTATT+GGG + chr7.4:5089878-5089897 MS.gene050820:CDS 45.0%
TGCAGTAAAGCTGATTGGGT+GGG + chr7.4:5089848-5089867 MS.gene050820:CDS 45.0%
TGTAAACGGGAACCAGCTTT+GGG + chr7.4:5087974-5087993 MS.gene050820:CDS 45.0%
! AATACGGGTTTTGCACTAGG+CGG + chr7.4:5089822-5089841 MS.gene050820:CDS 45.0%
! ACTGTGGATTGAGCTTACGT+TGG + chr7.4:5088313-5088332 MS.gene050820:intron 45.0%
! AGGAATACGGGTTTTGCACT+AGG + chr7.4:5089819-5089838 MS.gene050820:intron 45.0%
! CCGACTCTAGGTTTCTGTTT+TGG - chr7.4:5089287-5089306 None:intergenic 45.0%
! GACTCTTTTGATCCCTTGAC+AGG + chr7.4:5089777-5089796 MS.gene050820:intron 45.0%
!! ATTTGGACTTAGGAGGCGTT+TGG + chr7.4:5088825-5088844 MS.gene050820:intron 45.0%
!!! TAATAAATATTAGATTTTTT+TGG + chr7.4:5089016-5089035 MS.gene050820:intron 5.0%
ACATGGCACAGAAGGAAGGA+AGG - chr7.4:5089510-5089529 None:intergenic 50.0%
CCTAGAGTCGGTATACCCAT+AGG + chr7.4:5089296-5089315 MS.gene050820:intron 50.0%
CCTTAGAGAGAAAAGGGAGG+GGG + chr7.4:5088897-5088916 MS.gene050820:intron 50.0%
CTTAGAGAGAAAAGGGAGGG+GGG + chr7.4:5088898-5088917 MS.gene050820:intron 50.0%
GCAGTAAAGCTGATTGGGTG+GGG + chr7.4:5089849-5089868 MS.gene050820:CDS 50.0%
GGTGGGGAACAAGTGATGAA+GGG + chr7.4:5089865-5089884 MS.gene050820:CDS 50.0%
GTGATGAAGGGGAGGACTAT+TGG + chr7.4:5089877-5089896 MS.gene050820:CDS 50.0%
GTGGGGAACAAGTGATGAAG+GGG + chr7.4:5089866-5089885 MS.gene050820:CDS 50.0%
GTGTAAACGGGAACCAGCTT+TGG + chr7.4:5087973-5087992 MS.gene050820:CDS 50.0%
TGTGAGAGAGGTGACTGACA+TGG + chr7.4:5090221-5090240 MS.gene050820:CDS 50.0%
! ATTGGGATGCACCGATAGAC+TGG + chr7.4:5089223-5089242 MS.gene050820:intron 50.0%
! ATTGTGGGAGGCTCTGATCA+AGG + chr7.4:5088183-5088202 MS.gene050820:intron 50.0%
! TTCCCTTGGTTCTCGGTACT+CGG + chr7.4:5089619-5089638 MS.gene050820:intron 50.0%
!! CACTTTGGAGTTCGGGATGT+TGG - chr7.4:5087942-5087961 None:intergenic 50.0%
!! CCTATGGGTATACCGACTCT+AGG - chr7.4:5089299-5089318 None:intergenic 50.0%
!! GCTTTGAAGTCTCCCAAAGC+TGG - chr7.4:5087989-5088008 None:intergenic 50.0%
ACAGGGAGAAGCAACAAGGG+TGG - chr7.4:5089427-5089446 None:intergenic 55.0%
CCATGGCGTTGTCACTGAAG+AGG + chr7.4:5087789-5087808 MS.gene050820:CDS 55.0%
CCTCTTCAGTGACAACGCCA+TGG - chr7.4:5087792-5087811 None:intergenic 55.0%
GGGAACAAGTGATGAAGGGG+AGG + chr7.4:5089869-5089888 MS.gene050820:CDS 55.0%
GGGTGGGGAACAAGTGATGA+AGG + chr7.4:5089864-5089883 MS.gene050820:CDS 55.0%
TCGACAAGCTTGAGGGCAGT+CGG + chr7.4:5088702-5088721 MS.gene050820:intron 55.0%
TGCATGCTGTGGCCTTCTGT+GGG + chr7.4:5087716-5087735 MS.gene050820:CDS 55.0%
TTGCATGCTGTGGCCTTCTG+TGG + chr7.4:5087715-5087734 MS.gene050820:CDS 55.0%
! CCCCCTCCCTTTTCTCTCTA+AGG - chr7.4:5088900-5088919 None:intergenic 55.0%
! TCCCTTGGTTCTCGGTACTC+GGG + chr7.4:5089620-5089639 MS.gene050820:intron 55.0%
GCATGCTGTGGCCTTCTGTG+GGG + chr7.4:5087717-5087736 MS.gene050820:CDS 60.0%
! CCCTTGGTTCTCGGTACTCG+GGG + chr7.4:5089621-5089640 MS.gene050820:intron 60.0%
! GGGGGACTCCCTTTTCTGCA+TGG + chr7.4:5087752-5087771 MS.gene050820:CDS 60.0%
!! CCCCGAGTACCGAGAACCAA+GGG - chr7.4:5089624-5089643 None:intergenic 60.0%
!! CGGGATGTTGGCTCACAACC+AGG - chr7.4:5087930-5087949 None:intergenic 60.0%
AGCACAGCCAGCCCCACAGA+AGG - chr7.4:5087731-5087750 None:intergenic 65.0%
!! GCCCCGAGTACCGAGAACCA+AGG - chr7.4:5089625-5089644 None:intergenic 65.0%
!! TCTGTGGGGCTGGCTGTGCT+GGG + chr7.4:5087731-5087750 MS.gene050820:CDS 65.0%
!! TTCTGTGGGGCTGGCTGTGC+TGG + chr7.4:5087730-5087749 MS.gene050820:CDS 65.0%
GCTGTGGCCTTCTGTGGGGC+TGG + chr7.4:5087721-5087740 MS.gene050820:CDS 70.0%
!! CTGTGGGGCTGGCTGTGCTG+GGG + chr7.4:5087732-5087751 MS.gene050820:CDS 70.0%
!! TGTGGGGCTGGCTGTGCTGG+GGG + chr7.4:5087733-5087752 MS.gene050820:CDS 70.0%
!! GTGGGGCTGGCTGTGCTGGG+GGG + chr7.4:5087734-5087753 MS.gene050820:CDS 75.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 5087706 5090269 5087706 ID=MS.gene050820
chr7.4 mRNA 5087706 5090269 5087706 ID=MS.gene050820.t1;Parent=MS.gene050820
chr7.4 exon 5087706 5087810 5087706 ID=MS.gene050820.t1.exon1;Parent=MS.gene050820.t1
chr7.4 CDS 5087706 5087810 5087706 ID=cds.MS.gene050820.t1;Parent=MS.gene050820.t1
chr7.4 exon 5087891 5088109 5087891 ID=MS.gene050820.t1.exon2;Parent=MS.gene050820.t1
chr7.4 CDS 5087891 5088109 5087891 ID=cds.MS.gene050820.t1;Parent=MS.gene050820.t1
chr7.4 exon 5088837 5088886 5088837 ID=MS.gene050820.t1.exon3;Parent=MS.gene050820.t1
chr7.4 CDS 5088837 5088886 5088837 ID=cds.MS.gene050820.t1;Parent=MS.gene050820.t1
chr7.4 exon 5089821 5089899 5089821 ID=MS.gene050820.t1.exon4;Parent=MS.gene050820.t1
chr7.4 CDS 5089821 5089899 5089821 ID=cds.MS.gene050820.t1;Parent=MS.gene050820.t1
chr7.4 exon 5090009 5090044 5090009 ID=MS.gene050820.t1.exon5;Parent=MS.gene050820.t1
chr7.4 CDS 5090009 5090044 5090009 ID=cds.MS.gene050820.t1;Parent=MS.gene050820.t1
chr7.4 exon 5090135 5090269 5090135 ID=MS.gene050820.t1.exon6;Parent=MS.gene050820.t1
chr7.4 CDS 5090135 5090269 5090135 ID=cds.MS.gene050820.t1;Parent=MS.gene050820.t1
Gene Sequence

>MS.gene050820

ATGACATTCTTGCATGCTGTGGCCTTCTGTGGGGCTGGCTGTGCTGGGGGGACTCCCTTTTCTGCATGGATATACTTAGCTCACCATGGCGTTGTCACTGAAGAGGTAACAAATTTTCATTCTCGCTTGGAGAATAAAATCCTAGGCTCTTTCTTATGATCTGTATTTTTTATTACATGTGCCAGTGTGACCCATACTTTGATCAAATTGGTTGTTCTCATCCTGGTTGTGAGCCAACATCCCGAACTCCAAAGTGTGTTAAAAAGTGTGTAAACGGGAACCAGCTTTGGGAGACTTCAAAGCACTATAGTGTCAAAGCATATACGGTCAACTCTGATCCCCAAGATATCATGGCAGAAGTTTATAAGAACGGGCCAGTTGAAGTTGCATTCACTGTTTATGAGGTAAATGAATACTTTTGCCCGTCCTTTTGCAAATAAATTTTCTGCAATTAAATTTTTAAGACAATGATAATAGATTGTGGGAGGCTCTGATCAAGGAGCGAGTTTGATCATTTGAGACTTTTCATTTTGCTTAACTATAAACCTTTTTAGGATAAAGATCTGTATATATTCTTTTGGCAGATTATGTTGGATTATAAAATTAGACTGTGGATTGAGCTTACGTTGGAATTTTGAATATGAGAATTAGTCTTTCAAGATTTTCCATGAAGTATAAAATACCTTATATGAAGTATTGGTAAAAGTTGAAAAATGAGCGGATTGAAATTAGTCTAACCGTCATTCCAACCTAGCTATTGCTTTGGAAATTAGTGTCTCATTCTCAGAATTATTTAAAGTTCACTTTTATTATTGAGAGGACTTAACTTATCCTATATGATTGGATGAGTTGGGAAAGCATTTGCAAGAACAAAGACCGAAGGCGAAATTTAATTTTCAATAAAGGAGCTATGAATTATGAAGCTGAAAGTTAATTTTAGTGTAGCGATGTGAATCTTCTAAATCCCAACAGCTAAATATAGCAAAACTAGATATTTCGACAAGCTTGAGGGCAGTCGGCGATAAAAGAAAGTGAAGAGAGAGAGTCAATGCATGGAAATTTCAGTATTTTAGTCACAAAAAAGTTGAATCAATAACAAAGTCTCAGATATTACATTGGATTTGGACTTAGGAGGCGTTTGGTCACCATGTTACCCCAGAAAACGTAAAATTCAACATCTGGTAAGAAAAACCTTAGAGAGAAAAGGGAGGGGGGATAAAAAGAATAAAATAGCAAATCCTCCAATTTAGCTAGGTCTTTACTTCAAAGGTTACATTAAATTTTACATATTGTTTAGTTTGTATTTAGGCTAATAAATATTAGATTTTTTTGGTACCTTCTAGTTTTTTTTATCTGAATTGCATATGTTACCAATTAGATGGAATTGTATATATGTAACACAACTGATTTTAAAGCAGCGGTTTGTCATATAATACTAAAAACTGCTTGAAAATCTAGATGTTCAATAAGGCTATAATCAGATTATGGATTTCTGTCCAACTTCGACATGCACTTGCATTGGGATGCACCGATAGACTGGAATAATATGAAGTGTTCTCAATGAAATTTGAAACTCAACCAAAACAGAAACCTAGAGTCGGTATACCCATAGGGTAGTTTGCTACCAATTAAGAAATGACAAGCTCCAACAATAGTTGATATGTGACCTTTCGTTTTGTTTCATTTCTTTGATATTGTAAGAGACACTTGCTAAGTTTCCACCCTTGTTGCTTCTCCCTGTTACTCTTGTTTGGGTTTGTAGAACTTTACAGCCTCAGTTCTCCCATTGTCTTATGTTGCTCCTTCCTTCCTTCTGTGCCATGTTATCGGATATGCCATATATCTCCTTCACACATATTAGATTTGTGTTATATTACATTCCTTTTATTTCATTTCTTTATCTTTTAATGTTTTTCCCTTGGTTCTCGGTACTCGGGGCCAGTTGTCATCTCTTGTGCTTTGAAGATGCAGATTGACATAGGATAGAAGATACAATTTTCAAGTTAGAAACTAGACAGCGACCTTTCTGTCAATGTTTGTGGATCATTCTCCTATCCTTTTGCATAACTTTGACTCTTTTGATCCCTTGACAGGATTTTGCTCATTACAAATCAGGAATACGGGTTTTGCACTAGGCGGTCATGCAGTAAAGCTGATTGGGTGGGGAACAAGTGATGAAGGGGAGGACTATTGGGTGTGTTGACAATTTATAAACTTGTACCTGATATTAGACAACAATTTCAAACACATGCTTCTATTCATAATTTTATGTGTCCTGACTTTGTTGCTTTTCACTGTTTCAGCTTCTTGCAAATCAGTGGAATACAAATTGGGGGGATGTATGTTTCTTGAATTATTCTTTCAGCTTGAATAGTTGTTACTTAAGATATGTCTTAGCTAATGAACTAAGTTAATCTACTAAACTGCAGGATGGTTACTTCAAAATCAAGAGAGGGACAAACGAATGTGGGATTGAAAATGCTGTTACTGCTGGTTTGCCTTCTACCAAAAATATTGTGAGAGAGGTGACTGACATGGATGTTGATACTGATGTTTCATTCTGA

Protein sequence

>MS.gene050820.t1

MTFLHAVAFCGAGCAGGTPFSAWIYLAHHGVVTEECDPYFDQIGCSHPGCEPTSRTPKCVKKCVNGNQLWETSKHYSVKAYTVNSDPQDIMAEVYKNGPVEVAFTVYEEAFGHHVTPENVKFNIWNTGFALGGHAVKLIGWGTSDEGEDYWLLANQWNTNWGDDGYFKIKRGTNECGIENAVTAGLPSTKNIVREVTDMDVDTDVSF