AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45410.t1 MTR_8g009880 96.448 366 13 0 1 366 36 401 0.0 733
MS.gene45410.t1 MTR_5g097620 85.366 369 50 3 1 365 73 441 0.0 642
MS.gene45410.t1 MTR_4g133620 34.309 376 213 9 2 362 41 397 2.07e-63 207
MS.gene45410.t1 MTR_2g026080 36.043 369 210 10 2 360 45 397 5.89e-63 206
MS.gene45410.t1 MTR_7g051910 32.527 372 226 6 1 365 40 393 1.65e-61 202
MS.gene45410.t1 MTR_5g093520 35.244 349 200 9 3 339 54 388 1.17e-58 196
MS.gene45410.t1 MTR_3g058510 30.595 353 220 8 2 345 42 378 1.07e-51 176
MS.gene45410.t1 MTR_8g028075 31.858 226 144 7 113 336 336 553 1.28e-30 122
MS.gene45410.t1 MTR_7g117375 31.399 293 166 13 34 317 92 358 3.30e-21 94.4
MS.gene45410.t1 MTR_2g018960 29.814 161 103 3 153 307 651 807 9.73e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45410.t1 AT2G04850 69.919 369 106 4 1 366 38 404 0.0 519
MS.gene45410.t1 AT4G12980 34.444 360 212 5 1 349 44 390 1.06e-69 224
MS.gene45410.t1 AT3G25290 33.983 359 215 5 1 349 43 389 1.96e-69 223
MS.gene45410.t1 AT3G25290 33.983 359 215 5 1 349 43 389 1.96e-69 223
MS.gene45410.t1 AT5G47530 33.803 355 213 8 2 350 43 381 3.88e-66 214
MS.gene45410.t1 AT5G35735 33.705 359 212 10 12 365 55 392 1.02e-61 203
MS.gene45410.t1 AT4G17280 35.097 359 209 9 2 352 50 392 7.54e-61 201
MS.gene45410.t1 AT3G59070 30.532 357 214 12 21 361 72 410 6.65e-46 163
MS.gene45410.t1 AT3G07570 27.966 354 209 12 2 337 42 367 6.84e-30 118
MS.gene45410.t1 AT5G48750 29.954 217 134 4 1 213 49 251 5.97e-28 110
MS.gene45410.t1 AT3G61750 28.053 303 196 10 33 333 11 293 1.28e-26 108
MS.gene45410.t1 AT3G61750 27.103 321 212 10 15 333 70 370 3.43e-26 108
MS.gene45410.t1 AT5G54830 29.412 187 111 6 160 340 670 841 7.05e-14 73.6

Find 132 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTGTTTGCTTTCATTCT+TGG 0.155320 8.3:-78685633 MS.gene45410:CDS
ATTCCAAACAAGGTGGATTT+TGG 0.189165 8.3:+78685914 None:intergenic
GTTTGATTCTAGTTTGAATT+TGG 0.197666 8.3:+78685941 None:intergenic
GGTACTTTCATTTCACCTTC+TGG 0.249020 8.3:-78686209 MS.gene45410:CDS
AGACTTTAGCATTGTTGTTT+AGG 0.279742 8.3:-78685503 MS.gene45410:CDS
ACCTTAGAGCTAGTCTTCTT+TGG 0.283155 8.3:-78686230 MS.gene45410:CDS
AAACCAAAATCCACCTTGTT+TGG 0.304424 8.3:-78685917 MS.gene45410:CDS
GATTGGTGTTTCCATAGCTT+TGG 0.318729 8.3:-78685316 MS.gene45410:CDS
CACCTTCTGGATGGGTTGGA+TGG 0.322109 8.3:-78686196 MS.gene45410:CDS
CGATAACTGCACGTTACTTT+AGG 0.338646 8.3:-78685704 MS.gene45410:CDS
TCCTGTCATCTCCGATGAAA+TGG 0.341469 8.3:+78686163 None:intergenic
GTTTGAATTTGGCATAGATT+TGG 0.341934 8.3:+78685952 None:intergenic
CTGAACTTGTTCCTAGCGTT+TGG 0.344648 8.3:+78685480 None:intergenic
TTCGCCATTGGCATTCGCCT+TGG 0.354937 8.3:-78685600 MS.gene45410:CDS
GCTTTCATTCTTGGAACTGT+GGG 0.358819 8.3:-78685624 MS.gene45410:CDS
AATCCTACCACCACTTTGTT+GGG 0.359563 8.3:-78685446 MS.gene45410:CDS
TGCCAAGCTGAGTTACTGTT+TGG 0.360154 8.3:-78685352 MS.gene45410:CDS
ACCTTCTGGATGGGTTGGAT+GGG 0.360379 8.3:-78686195 MS.gene45410:CDS
TCTTCCATGGCGGCCATATA+TGG 0.369335 8.3:-78686011 MS.gene45410:CDS
GGCCATATATGGTGGCAAAA+AGG 0.375935 8.3:-78686000 MS.gene45410:CDS
TCGCCATTGGCATTCGCCTT+GGG 0.378753 8.3:-78685599 MS.gene45410:CDS
TTGGGACTTTCTACTCTGAT+TGG 0.385534 8.3:-78685333 MS.gene45410:CDS
CCTCTCTTCCATTGCCACCT+TGG 0.387175 8.3:-78685835 MS.gene45410:CDS
GATATTCTGTAGGAAATCTA+AGG 0.396344 8.3:-78685277 MS.gene45410:CDS
AAATCCTACCACCACTTTGT+TGG 0.398807 8.3:-78685447 MS.gene45410:CDS
GCCACCTTGGACGTGTTGTC+AGG 0.406139 8.3:-78685822 MS.gene45410:CDS
ACCAAAGAAGACTAGCTCTA+AGG 0.410370 8.3:+78686229 None:intergenic
GGGTACTCTTGTGTGGTGCT+CGG 0.419514 8.3:-78685426 MS.gene45410:CDS
TCCATGCTATAGAGGCTTGT+TGG 0.422158 8.3:+78686273 None:intergenic
TTTCAAGGGTTTGAAGTGAT+GGG 0.426534 8.3:-78685390 MS.gene45410:CDS
CTTTCATTTCACCTTCTGGA+TGG 0.427020 8.3:-78686205 MS.gene45410:CDS
GGTACTCTTGTGTGGTGCTC+GGG 0.429304 8.3:-78685425 MS.gene45410:CDS
ATTTCACCTTCTGGATGGGT+TGG 0.432760 8.3:-78686200 MS.gene45410:CDS
AATCGAGGACTTTATGTTCA+AGG 0.432833 8.3:-78685894 MS.gene45410:CDS
GGGTTTGTGAATGTGTTTCA+AGG 0.433084 8.3:-78685405 MS.gene45410:CDS
CCTTCTGGATGGGTTGGATG+GGG 0.433473 8.3:-78686194 MS.gene45410:CDS
AGGACTACTTGGCCTGAACT+TGG 0.435228 8.3:+78686113 None:intergenic
CCATGCTATAGAGGCTTGTT+GGG 0.439886 8.3:+78686274 None:intergenic
TAGCTTTGGAGGTGAACTCT+TGG 0.445429 8.3:-78685302 MS.gene45410:CDS
CGCCTTGGGCAATTGTCTCC+AGG 0.448142 8.3:-78685585 MS.gene45410:CDS
GGAACTGTGGGGTTCGCCAT+TGG 0.448882 8.3:-78685612 MS.gene45410:CDS
CCTGTCATCTCCGATGAAAT+GGG 0.449627 8.3:+78686164 None:intergenic
TTTCATTTCACCTTCTGGAT+GGG 0.456584 8.3:-78686204 MS.gene45410:CDS
TAGAGGCTTGTTGGGTGGGA+AGG 0.463403 8.3:+78686282 None:intergenic
GTTTCAAGGGTTTGAAGTGA+TGG 0.464273 8.3:-78685391 MS.gene45410:CDS
AGCTTTGGAGGTGAACTCTT+GGG 0.465949 8.3:-78685301 MS.gene45410:CDS
GCCAAGCTGAGTTACTGTTT+GGG 0.467839 8.3:-78685351 MS.gene45410:CDS
AGCTCTAAGGTGGAGTTATG+AGG 0.469977 8.3:+78686242 None:intergenic
CAAACGCTAGGAACAAGTTC+AGG 0.470832 8.3:-78685479 MS.gene45410:CDS
TATAGCCTCCACAGGAAGCT+TGG 0.472577 8.3:-78685555 MS.gene45410:CDS
TACTTTGAATGCCATCTCAT+GGG 0.476629 8.3:-78685748 MS.gene45410:CDS
GGAACAAGTTCAGGAAGTAT+TGG 0.480063 8.3:-78685470 MS.gene45410:CDS
GAGAGGTCAGTGGAGGTGGT+TGG 0.482995 8.3:+78685852 None:intergenic
CATTCACCTTATCTCTTCCA+TGG 0.483758 8.3:-78686024 MS.gene45410:CDS
GCTATAGAGGCTTGTTGGGT+GGG 0.484183 8.3:+78686278 None:intergenic
ACATTCGGGTCTATGATGTA+AGG 0.484186 8.3:+78686086 None:intergenic
GGAAGAGAGGTCAGTGGAGG+TGG 0.485795 8.3:+78685848 None:intergenic
GAATTTGGCATAGATTTGGA+TGG 0.486860 8.3:+78685956 None:intergenic
TGCTTTCATTCTTGGAACTG+TGG 0.487236 8.3:-78685625 MS.gene45410:CDS
ATGAAGAGAGAAGGACTTGT+CGG 0.488902 8.3:-78685246 MS.gene45410:CDS
GCCTGAACTTGGGTCAGAAA+AGG 0.492569 8.3:+78686124 None:intergenic
CAGCTTGGCATAGGATCTGC+TGG 0.493751 8.3:+78685365 None:intergenic
TGTAAGGAAGTAGGACTACT+TGG 0.498128 8.3:+78686102 None:intergenic
TTCAAGGGTTTGAAGTGATG+GGG 0.499384 8.3:-78685389 MS.gene45410:CDS
TGGAGGCTATACTCCACTCC+TGG 0.501025 8.3:+78685567 None:intergenic
TGGTGTTTCCATAGCTTTGG+AGG 0.501209 8.3:-78685313 MS.gene45410:CDS
GGTCTATGATGTAAGGAAGT+AGG 0.509135 8.3:+78686093 None:intergenic
AATTTGGCATAGATTTGGAT+GGG 0.513427 8.3:+78685957 None:intergenic
TGCTATAGAGGCTTGTTGGG+TGG 0.514341 8.3:+78686277 None:intergenic
GAAGAGAAAATGAAGAGAGA+AGG 0.521275 8.3:-78685255 MS.gene45410:CDS
TGGGCAATTGTCTCCAGGAG+TGG 0.533669 8.3:-78685580 MS.gene45410:CDS
AGAGTTCACCTCCAAAGCTA+TGG 0.533936 8.3:+78685305 None:intergenic
CTAAAGTCTGCAAGGCTCCA+AGG 0.539524 8.3:+78685517 None:intergenic
GAGGTGGTTGGATGAATAGT+AGG 0.540410 8.3:+78685864 None:intergenic
GGTTTGTGAATGTGTTTCAA+GGG 0.541986 8.3:-78685404 MS.gene45410:CDS
ATCCACCTTGTTTGGAATCG+AGG 0.543575 8.3:-78685909 MS.gene45410:CDS
TTGTCGGAACTTCTGACAAA+GGG 0.544921 8.3:-78685230 MS.gene45410:CDS
GTACTTTGAATGCCATCTCA+TGG 0.547445 8.3:-78685749 MS.gene45410:CDS
TCCCAAACAGTAACTCAGCT+TGG 0.549887 8.3:+78685350 None:intergenic
CCCATTTCATCGGAGATGAC+AGG 0.549985 8.3:-78686164 MS.gene45410:CDS
CAACACGTCCAAGGTGGCAA+TGG 0.551704 8.3:+78685827 None:intergenic
ACAGTAACTCAGCTTGGCAT+AGG 0.553331 8.3:+78685356 None:intergenic
GAGTGGAGTATAGCCTCCAC+AGG 0.555834 8.3:-78685563 MS.gene45410:CDS
GTAGAAAGTCCATGCTATAG+AGG 0.558385 8.3:+78686265 None:intergenic
CTTTGTTGGGTACTCTTGTG+TGG 0.563285 8.3:-78685433 MS.gene45410:CDS
CAAGGCTCCAAGGCAAAACA+CGG 0.566886 8.3:+78685527 None:intergenic
TTGCCCAAGGCGAATGCCAA+TGG 0.566998 8.3:+78685596 None:intergenic
GCGTGGTTCTATGCTCATGC+AGG 0.567093 8.3:-78685660 MS.gene45410:CDS
CAACAATGCTAAAGTCTGCA+AGG 0.567757 8.3:+78685509 None:intergenic
GGGAATCAACCCCATTTCAT+CGG 0.569185 8.3:-78686174 MS.gene45410:CDS
GCCACCATATATGGCCGCCA+TGG 0.570636 8.3:+78686007 None:intergenic
TTTAGGCATATTCAATCACT+AGG 0.571060 8.3:-78685687 MS.gene45410:CDS
CGATTCCAAGCTTCCTGTGG+AGG 0.572777 8.3:+78685550 None:intergenic
CTTTCATTCTTGGAACTGTG+GGG 0.574407 8.3:-78685623 MS.gene45410:CDS
GGACTACTTGGCCTGAACTT+GGG 0.575450 8.3:+78686114 None:intergenic
TGGCCGCCATGGAAGAGATA+AGG 0.578696 8.3:+78686018 None:intergenic
AAAGTCCTCGATTCCAAACA+AGG 0.585689 8.3:+78685904 None:intergenic
GCTCTAAGGTGGAGTTATGA+GGG 0.585753 8.3:+78686243 None:intergenic
TATGTATTCTCTTTCAAGTG+TGG 0.586082 8.3:+78685196 None:intergenic
TGTTGTTTAGGCCAAACGCT+AGG 0.586674 8.3:-78685491 MS.gene45410:CDS
ACAATGCTGAGAGTGATTCA+CGG 0.588148 8.3:-78685771 MS.gene45410:CDS
CCCAACAAGCCTCTATAGCA+TGG 0.588511 8.3:-78686274 MS.gene45410:CDS
ATTTGGCATAGATTTGGATG+GGG 0.589019 8.3:+78685958 None:intergenic
CAAAAGAATACCCCATGAGA+TGG 0.592702 8.3:+78685737 None:intergenic
ACTCTTGGGTGATATTCTGT+AGG 0.598331 8.3:-78685287 MS.gene45410:CDS
TTTGGCATAGATTTGGATGG+GGG 0.598707 8.3:+78685959 None:intergenic
TCAAGGGTTTGAAGTGATGG+GGG 0.598986 8.3:-78685388 MS.gene45410:CDS
AAAGAAGACTAGCTCTAAGG+TGG 0.603475 8.3:+78686232 None:intergenic
TCAAGTGGTCGAGAGAGTAG+TGG 0.610217 8.3:+78686047 None:intergenic
CGGCGATTCCAAGCTTCCTG+TGG 0.614274 8.3:+78685547 None:intergenic
CCAAGGTGGCAATGGAAGAG+AGG 0.618055 8.3:+78685835 None:intergenic
CTGTCATCTCCGATGAAATG+GGG 0.622824 8.3:+78686165 None:intergenic
TGAACCTGACAACACGTCCA+AGG 0.624862 8.3:+78685818 None:intergenic
CCCCATCCAACCCATCCAGA+AGG 0.626283 8.3:+78686194 None:intergenic
CTTGTCGGAACTTCTGACAA+AGG 0.629302 8.3:-78685231 MS.gene45410:CDS
GGCAATGGAAGAGAGGTCAG+TGG 0.631399 8.3:+78685842 None:intergenic
ACTTCTGACAAAGGGAGTAG+TGG 0.632759 8.3:-78685222 MS.gene45410:CDS
CGTGCAGTTATCGCTCCCAT+CGG 0.634360 8.3:+78685714 None:intergenic
CACAAGAGTACCCAACAAAG+TGG 0.636742 8.3:+78685436 None:intergenic
ACTTTGAATGCCATCTCATG+GGG 0.644712 8.3:-78685747 MS.gene45410:CDS
GTACCCAACAAAGTGGTGGT+AGG 0.645713 8.3:+78685443 None:intergenic
TCCATGGCGGCCATATATGG+TGG 0.646343 8.3:-78686008 MS.gene45410:CDS
CTCCTGGAGACAATTGCCCA+AGG 0.651679 8.3:+78685583 None:intergenic
GAGATAAGGTGAATGTCAAG+TGG 0.666609 8.3:+78686032 None:intergenic
TTCAATCACTAGGTCCTGCG+TGG 0.687681 8.3:-78685677 MS.gene45410:CDS
AATGGAAGAGAGGTCAGTGG+AGG 0.692402 8.3:+78685845 None:intergenic
TCACCTTATCTCTTCCATGG+CGG 0.701620 8.3:-78686021 MS.gene45410:CDS
GTCCTCGATTCCAAACAAGG+TGG 0.704268 8.3:+78685907 None:intergenic
AAGAGTACCCAACAAAGTGG+TGG 0.705072 8.3:+78685439 None:intergenic
GCATGAGCATAGAACCACGC+AGG 0.706285 8.3:+78685663 None:intergenic
AAGATCTGTGTGTTGACGAG+CGG 0.718013 8.3:+78685794 None:intergenic
ACCTGACAACACGTCCAAGG+TGG 0.719059 8.3:+78685821 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTGATTCTAGTTTGAATT+TGG + chr8.3:78685558-78685577 None:intergenic 25.0%
AATTTGGCATAGATTTGGAT+GGG + chr8.3:78685542-78685561 None:intergenic 30.0%
CAATTGTTTGCTTTCATTCT+TGG - chr8.3:78685863-78685882 MS.gene45410:CDS 30.0%
GATATTCTGTAGGAAATCTA+AGG - chr8.3:78686219-78686238 MS.gene45410:CDS 30.0%
GTTTGAATTTGGCATAGATT+TGG + chr8.3:78685547-78685566 None:intergenic 30.0%
TTTAGGCATATTCAATCACT+AGG - chr8.3:78685809-78685828 MS.gene45410:CDS 30.0%
!! AGACTTTAGCATTGTTGTTT+AGG - chr8.3:78685993-78686012 MS.gene45410:CDS 30.0%
!!! ATTTTTGGAGCTTTACATTC+GGG + chr8.3:78685427-78685446 None:intergenic 30.0%
!!! GATTTTTGGAGCTTTACATT+CGG + chr8.3:78685428-78685447 None:intergenic 30.0%
AAACCAAAATCCACCTTGTT+TGG - chr8.3:78685579-78685598 MS.gene45410:CDS 35.0%
AATCGAGGACTTTATGTTCA+AGG - chr8.3:78685602-78685621 MS.gene45410:CDS 35.0%
ATTTGGCATAGATTTGGATG+GGG + chr8.3:78685541-78685560 None:intergenic 35.0%
GAAGAGAAAATGAAGAGAGA+AGG - chr8.3:78686241-78686260 MS.gene45410:CDS 35.0%
GAATTTGGCATAGATTTGGA+TGG + chr8.3:78685543-78685562 None:intergenic 35.0%
GGTTTGTGAATGTGTTTCAA+GGG - chr8.3:78686092-78686111 MS.gene45410:CDS 35.0%
TACTTTGAATGCCATCTCAT+GGG - chr8.3:78685748-78685767 MS.gene45410:CDS 35.0%
TTTCATTTCACCTTCTGGAT+GGG - chr8.3:78685292-78685311 MS.gene45410:CDS 35.0%
! TTTCAAGGGTTTGAAGTGAT+GGG - chr8.3:78686106-78686125 MS.gene45410:CDS 35.0%
!! ATTCCAAACAAGGTGGATTT+TGG + chr8.3:78685585-78685604 None:intergenic 35.0%
AAAAAGGCCACCATACACAA+CGG - chr8.3:78685512-78685531 MS.gene45410:CDS 40.0%
AAAGTCCTCGATTCCAAACA+AGG + chr8.3:78685595-78685614 None:intergenic 40.0%
AAATCCTACCACCACTTTGT+TGG - chr8.3:78686049-78686068 MS.gene45410:CDS 40.0%
AATCCTACCACCACTTTGTT+GGG - chr8.3:78686050-78686069 MS.gene45410:CDS 40.0%
ACAATGCTGAGAGTGATTCA+CGG - chr8.3:78685725-78685744 MS.gene45410:CDS 40.0%
ACATTCGGGTCTATGATGTA+AGG + chr8.3:78685413-78685432 None:intergenic 40.0%
ACTCTTGGGTGATATTCTGT+AGG - chr8.3:78686209-78686228 MS.gene45410:CDS 40.0%
ACTTTGAATGCCATCTCATG+GGG - chr8.3:78685749-78685768 MS.gene45410:CDS 40.0%
ATGAAGAGAGAAGGACTTGT+CGG - chr8.3:78686250-78686269 MS.gene45410:CDS 40.0%
CAAAAGAATACCCCATGAGA+TGG + chr8.3:78685762-78685781 None:intergenic 40.0%
CAACAATGCTAAAGTCTGCA+AGG + chr8.3:78685990-78686009 None:intergenic 40.0%
CATTCACCTTATCTCTTCCA+TGG - chr8.3:78685472-78685491 MS.gene45410:CDS 40.0%
CTTTCATTCTTGGAACTGTG+GGG - chr8.3:78685873-78685892 MS.gene45410:CDS 40.0%
CTTTCATTTCACCTTCTGGA+TGG - chr8.3:78685291-78685310 MS.gene45410:CDS 40.0%
GAGATAAGGTGAATGTCAAG+TGG + chr8.3:78685467-78685486 None:intergenic 40.0%
GCTTTCATTCTTGGAACTGT+GGG - chr8.3:78685872-78685891 MS.gene45410:CDS 40.0%
GGGTTTGTGAATGTGTTTCA+AGG - chr8.3:78686091-78686110 MS.gene45410:CDS 40.0%
GGTACTTTCATTTCACCTTC+TGG - chr8.3:78685287-78685306 MS.gene45410:CDS 40.0%
GGTCTATGATGTAAGGAAGT+AGG + chr8.3:78685406-78685425 None:intergenic 40.0%
GTACTTTGAATGCCATCTCA+TGG - chr8.3:78685747-78685766 MS.gene45410:CDS 40.0%
GTAGAAAGTCCATGCTATAG+AGG + chr8.3:78685234-78685253 None:intergenic 40.0%
TGCTTTCATTCTTGGAACTG+TGG - chr8.3:78685871-78685890 MS.gene45410:CDS 40.0%
TGTAAGGAAGTAGGACTACT+TGG + chr8.3:78685397-78685416 None:intergenic 40.0%
TTGGGACTTTCTACTCTGAT+TGG - chr8.3:78686163-78686182 MS.gene45410:CDS 40.0%
TTGTCGGAACTTCTGACAAA+GGG - chr8.3:78686266-78686285 MS.gene45410:CDS 40.0%
TTTGGCATAGATTTGGATGG+GGG + chr8.3:78685540-78685559 None:intergenic 40.0%
! CGATAACTGCACGTTACTTT+AGG - chr8.3:78685792-78685811 MS.gene45410:CDS 40.0%
! GATTGGTGTTTCCATAGCTT+TGG - chr8.3:78686180-78686199 MS.gene45410:CDS 40.0%
! GGAACAAGTTCAGGAAGTAT+TGG - chr8.3:78686026-78686045 MS.gene45410:CDS 40.0%
! GTTTCAAGGGTTTGAAGTGA+TGG - chr8.3:78686105-78686124 MS.gene45410:CDS 40.0%
! TTCAAGGGTTTGAAGTGATG+GGG - chr8.3:78686107-78686126 MS.gene45410:CDS 40.0%
!! AAAGAAGACTAGCTCTAAGG+TGG + chr8.3:78685267-78685286 None:intergenic 40.0%
!! ACCAAAGAAGACTAGCTCTA+AGG + chr8.3:78685270-78685289 None:intergenic 40.0%
!! ACCTTAGAGCTAGTCTTCTT+TGG - chr8.3:78685266-78685285 MS.gene45410:CDS 40.0%
!! GAGAGAGTAGTGGAGATTTT+TGG + chr8.3:78685442-78685461 None:intergenic 40.0%
ACAGTAACTCAGCTTGGCAT+AGG + chr8.3:78686143-78686162 None:intergenic 45.0%
ACTTCTGACAAAGGGAGTAG+TGG - chr8.3:78686274-78686293 MS.gene45410:CDS 45.0%
AGAGTTCACCTCCAAAGCTA+TGG + chr8.3:78686194-78686213 None:intergenic 45.0%
ATTTCACCTTCTGGATGGGT+TGG - chr8.3:78685296-78685315 MS.gene45410:CDS 45.0%
CAAACGCTAGGAACAAGTTC+AGG - chr8.3:78686017-78686036 MS.gene45410:CDS 45.0%
CCTGTCATCTCCGATGAAAT+GGG + chr8.3:78685335-78685354 None:intergenic 45.0%
CTGTCATCTCCGATGAAATG+GGG + chr8.3:78685334-78685353 None:intergenic 45.0%
CTTGTCGGAACTTCTGACAA+AGG - chr8.3:78686265-78686284 MS.gene45410:CDS 45.0%
CTTTGTTGGGTACTCTTGTG+TGG - chr8.3:78686063-78686082 MS.gene45410:CDS 45.0%
GAGGTGGTTGGATGAATAGT+AGG + chr8.3:78685635-78685654 None:intergenic 45.0%
GCCAAGCTGAGTTACTGTTT+GGG - chr8.3:78686145-78686164 MS.gene45410:CDS 45.0%
GGCCATATATGGTGGCAAAA+AGG - chr8.3:78685496-78685515 MS.gene45410:CDS 45.0%
GGGAATCAACCCCATTTCAT+CGG - chr8.3:78685322-78685341 MS.gene45410:CDS 45.0%
TCACCTTATCTCTTCCATGG+CGG - chr8.3:78685475-78685494 MS.gene45410:CDS 45.0%
TCCATGCTATAGAGGCTTGT+TGG + chr8.3:78685226-78685245 None:intergenic 45.0%
TCCCAAACAGTAACTCAGCT+TGG + chr8.3:78686149-78686168 None:intergenic 45.0%
TCCTGTCATCTCCGATGAAA+TGG + chr8.3:78685336-78685355 None:intergenic 45.0%
TGCCAAGCTGAGTTACTGTT+TGG - chr8.3:78686144-78686163 MS.gene45410:CDS 45.0%
! AAGATCTGTGTGTTGACGAG+CGG + chr8.3:78685705-78685724 None:intergenic 45.0%
! ATCCACCTTGTTTGGAATCG+AGG - chr8.3:78685587-78685606 MS.gene45410:CDS 45.0%
! CCATGCTATAGAGGCTTGTT+GGG + chr8.3:78685225-78685244 None:intergenic 45.0%
! CTGAACTTGTTCCTAGCGTT+TGG + chr8.3:78686019-78686038 None:intergenic 45.0%
! GGCCTTTTTGCCACCATATA+TGG + chr8.3:78685501-78685520 None:intergenic 45.0%
! TCAAGGGTTTGAAGTGATGG+GGG - chr8.3:78686108-78686127 MS.gene45410:CDS 45.0%
! TGTTGTTTAGGCCAAACGCT+AGG - chr8.3:78686005-78686024 MS.gene45410:CDS 45.0%
!! AAGAGTACCCAACAAAGTGG+TGG + chr8.3:78686060-78686079 None:intergenic 45.0%
!! AGCTCTAAGGTGGAGTTATG+AGG + chr8.3:78685257-78685276 None:intergenic 45.0%
!! AGCTTTGGAGGTGAACTCTT+GGG - chr8.3:78686195-78686214 MS.gene45410:CDS 45.0%
!! ATGGGGTATTCTTTTGCCGA+TGG - chr8.3:78685766-78685785 MS.gene45410:CDS 45.0%
!! CACAAGAGTACCCAACAAAG+TGG + chr8.3:78686063-78686082 None:intergenic 45.0%
!! GCTCTAAGGTGGAGTTATGA+GGG + chr8.3:78685256-78685275 None:intergenic 45.0%
!! TAGCTTTGGAGGTGAACTCT+TGG - chr8.3:78686194-78686213 MS.gene45410:CDS 45.0%
!! TGGGGTATTCTTTTGCCGAT+GGG - chr8.3:78685767-78685786 MS.gene45410:CDS 45.0%
!! TGGTGTTTCCATAGCTTTGG+AGG - chr8.3:78686183-78686202 MS.gene45410:CDS 45.0%
AATGGAAGAGAGGTCAGTGG+AGG + chr8.3:78685654-78685673 None:intergenic 50.0%
AGGACTACTTGGCCTGAACT+TGG + chr8.3:78685386-78685405 None:intergenic 50.0%
CAAGGCTCCAAGGCAAAACA+CGG + chr8.3:78685972-78685991 None:intergenic 50.0%
CCCAACAAGCCTCTATAGCA+TGG - chr8.3:78685222-78685241 MS.gene45410:CDS 50.0%
CCCATTTCATCGGAGATGAC+AGG - chr8.3:78685332-78685351 MS.gene45410:CDS 50.0%
CTAAAGTCTGCAAGGCTCCA+AGG + chr8.3:78685982-78686001 None:intergenic 50.0%
GCCTGAACTTGGGTCAGAAA+AGG + chr8.3:78685375-78685394 None:intergenic 50.0%
GGACTACTTGGCCTGAACTT+GGG + chr8.3:78685385-78685404 None:intergenic 50.0%
GTACCCAACAAAGTGGTGGT+AGG + chr8.3:78686056-78686075 None:intergenic 50.0%
GTCCTCGATTCCAAACAAGG+TGG + chr8.3:78685592-78685611 None:intergenic 50.0%
TATAGCCTCCACAGGAAGCT+TGG - chr8.3:78685941-78685960 MS.gene45410:CDS 50.0%
TCAAGTGGTCGAGAGAGTAG+TGG + chr8.3:78685452-78685471 None:intergenic 50.0%
TCTTCCATGGCGGCCATATA+TGG - chr8.3:78685485-78685504 MS.gene45410:CDS 50.0%
TGAACCTGACAACACGTCCA+AGG + chr8.3:78685681-78685700 None:intergenic 50.0%
TTCAATCACTAGGTCCTGCG+TGG - chr8.3:78685819-78685838 MS.gene45410:CDS 50.0%
! GCCTTTTCTGACCCAAGTTC+AGG - chr8.3:78685371-78685390 MS.gene45410:CDS 50.0%
!! ACCTTCTGGATGGGTTGGAT+GGG - chr8.3:78685301-78685320 MS.gene45410:CDS 50.0%
!! GCTATAGAGGCTTGTTGGGT+GGG + chr8.3:78685221-78685240 None:intergenic 50.0%
!! TGCTATAGAGGCTTGTTGGG+TGG + chr8.3:78685222-78685241 None:intergenic 50.0%
ACCTGACAACACGTCCAAGG+TGG + chr8.3:78685678-78685697 None:intergenic 55.0%
CAACACGTCCAAGGTGGCAA+TGG + chr8.3:78685672-78685691 None:intergenic 55.0%
CAGCTTGGCATAGGATCTGC+TGG + chr8.3:78686134-78686153 None:intergenic 55.0%
CCAAGGTGGCAATGGAAGAG+AGG + chr8.3:78685664-78685683 None:intergenic 55.0%
CCTCTCTTCCATTGCCACCT+TGG - chr8.3:78685661-78685680 MS.gene45410:CDS 55.0%
CGATTCCAAGCTTCCTGTGG+AGG + chr8.3:78685949-78685968 None:intergenic 55.0%
CGTGCAGTTATCGCTCCCAT+CGG + chr8.3:78685785-78685804 None:intergenic 55.0%
CTCCTGGAGACAATTGCCCA+AGG + chr8.3:78685916-78685935 None:intergenic 55.0%
GAGTGGAGTATAGCCTCCAC+AGG - chr8.3:78685933-78685952 MS.gene45410:CDS 55.0%
GCATGAGCATAGAACCACGC+AGG + chr8.3:78685836-78685855 None:intergenic 55.0%
GGCAATGGAAGAGAGGTCAG+TGG + chr8.3:78685657-78685676 None:intergenic 55.0%
GGGTACTCTTGTGTGGTGCT+CGG - chr8.3:78686070-78686089 MS.gene45410:CDS 55.0%
GGTACTCTTGTGTGGTGCTC+GGG - chr8.3:78686071-78686090 MS.gene45410:CDS 55.0%
TCCATGGCGGCCATATATGG+TGG - chr8.3:78685488-78685507 MS.gene45410:CDS 55.0%
TCGCCATTGGCATTCGCCTT+GGG - chr8.3:78685897-78685916 MS.gene45410:CDS 55.0%
TGGAGGCTATACTCCACTCC+TGG + chr8.3:78685932-78685951 None:intergenic 55.0%
TGGCCGCCATGGAAGAGATA+AGG + chr8.3:78685481-78685500 None:intergenic 55.0%
TGGGCAATTGTCTCCAGGAG+TGG - chr8.3:78685916-78685935 MS.gene45410:CDS 55.0%
TTCGCCATTGGCATTCGCCT+TGG - chr8.3:78685896-78685915 MS.gene45410:CDS 55.0%
TTGCCCAAGGCGAATGCCAA+TGG + chr8.3:78685903-78685922 None:intergenic 55.0%
! GCGTGGTTCTATGCTCATGC+AGG - chr8.3:78685836-78685855 MS.gene45410:CDS 55.0%
! GGAATCGCCGTGTTTTGCCT+TGG - chr8.3:78685962-78685981 MS.gene45410:CDS 55.0%
!! CACCTTCTGGATGGGTTGGA+TGG - chr8.3:78685300-78685319 MS.gene45410:CDS 55.0%
!! CCTTCTGGATGGGTTGGATG+GGG - chr8.3:78685302-78685321 MS.gene45410:CDS 55.0%
!! TAGAGGCTTGTTGGGTGGGA+AGG + chr8.3:78685217-78685236 None:intergenic 55.0%
CCCCATCCAACCCATCCAGA+AGG + chr8.3:78685305-78685324 None:intergenic 60.0%
CGCCTTGGGCAATTGTCTCC+AGG - chr8.3:78685911-78685930 MS.gene45410:CDS 60.0%
CGGCGATTCCAAGCTTCCTG+TGG + chr8.3:78685952-78685971 None:intergenic 60.0%
GAGAGGTCAGTGGAGGTGGT+TGG + chr8.3:78685647-78685666 None:intergenic 60.0%
GCCACCATATATGGCCGCCA+TGG + chr8.3:78685492-78685511 None:intergenic 60.0%
GCCACCTTGGACGTGTTGTC+AGG - chr8.3:78685674-78685693 MS.gene45410:CDS 60.0%
GGAACTGTGGGGTTCGCCAT+TGG - chr8.3:78685884-78685903 MS.gene45410:CDS 60.0%
GGAAGAGAGGTCAGTGGAGG+TGG + chr8.3:78685651-78685670 None:intergenic 60.0%
!! GATGGGGGCACCGTTGTGTA+TGG + chr8.3:78685525-78685544 None:intergenic 60.0%
!! GGGGGCACCGTTGTGTATGG+TGG + chr8.3:78685522-78685541 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 78685209 78686309 78685209 ID=MS.gene45410
chr8.3 mRNA 78685209 78686309 78685209 ID=MS.gene45410.t1;Parent=MS.gene45410
chr8.3 exon 78685209 78686309 78685209 ID=MS.gene45410.t1.exon1;Parent=MS.gene45410.t1
chr8.3 CDS 78685209 78686309 78685209 ID=cds.MS.gene45410.t1;Parent=MS.gene45410.t1
Gene Sequence

>MS.gene45410

ATGAACCTTCCCACCCAACAAGCCTCTATAGCATGGACTTTCTACCCTCATAACTCCACCTTAGAGCTAGTCTTCTTTGGTACTTTCATTTCACCTTCTGGATGGGTTGGATGGGGAATCAACCCCATTTCATCGGAGATGACAGGAACTCGTGCTTTAATAGCCTTTTCTGACCCAAGTTCAGGCCAAGTAGTCCTACTTCCTTACATCATAGACCCGAATGTAAAGCTCCAAAAATCTCCACTACTCTCTCGACCACTTGACATTCACCTTATCTCTTCCATGGCGGCCATATATGGTGGCAAAAAGGCCACCATACACAACGGTGCCCCCATCCAAATCTATGCCAAATTCAAACTAGAATCAAACAAAACCAAAATCCACCTTGTTTGGAATCGAGGACTTTATGTTCAAGGCTATTCGCCTACTATTCATCCAACCACCTCCACTGACCTCTCTTCCATTGCCACCTTGGACGTGTTGTCAGGTTCATCCGCTCGTCAACACACAGATCTTACAATGCTGAGAGTGATTCACGGTACTTTGAATGCCATCTCATGGGGTATTCTTTTGCCGATGGGAGCGATAACTGCACGTTACTTTAGGCATATTCAATCACTAGGTCCTGCGTGGTTCTATGCTCATGCAGGAATACAATTGTTTGCTTTCATTCTTGGAACTGTGGGGTTCGCCATTGGCATTCGCCTTGGGCAATTGTCTCCAGGAGTGGAGTATAGCCTCCACAGGAAGCTTGGAATCGCCGTGTTTTGCCTTGGAGCCTTGCAGACTTTAGCATTGTTGTTTAGGCCAAACGCTAGGAACAAGTTCAGGAAGTATTGGAAATCCTACCACCACTTTGTTGGGTACTCTTGTGTGGTGCTCGGGTTTGTGAATGTGTTTCAAGGGTTTGAAGTGATGGGGGCCAGCAGATCCTATGCCAAGCTGAGTTACTGTTTGGGACTTTCTACTCTGATTGGTGTTTCCATAGCTTTGGAGGTGAACTCTTGGGTGATATTCTGTAGGAAATCTAAGGAAGAGAAAATGAAGAGAGAAGGACTTGTCGGAACTTCTGACAAAGGGAGTAGTGGCATCCACACTTGA
Protein sequence

>MS.gene45410.t1

MNLPTQQASIAWTFYPHNSTLELVFFGTFISPSGWVGWGINPISSEMTGTRALIAFSDPSSGQVVLLPYIIDPNVKLQKSPLLSRPLDIHLISSMAAIYGGKKATIHNGAPIQIYAKFKLESNKTKIHLVWNRGLYVQGYSPTIHPTTSTDLSSIATLDVLSGSSARQHTDLTMLRVIHGTLNAISWGILLPMGAITARYFRHIQSLGPAWFYAHAGIQLFAFILGTVGFAIGIRLGQLSPGVEYSLHRKLGIAVFCLGALQTLALLFRPNARNKFRKYWKSYHHFVGYSCVVLGFVNVFQGFEVMGASRSYAKLSYCLGLSTLIGVSIALEVNSWVIFCRKSKEEKMKREGLVGTSDKGSSGIHT