Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45704.t1 | XP_013456385.1 | 98.3 | 352 | 6 | 0 | 1 | 352 | 80 | 431 | 2.50E-196 | 694.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45704.t1 | Q9LN62 | 70.7 | 358 | 96 | 3 | 1 | 350 | 71 | 427 | 1.9e-139 | 496.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45704.t1 | A0A072UM19 | 98.3 | 352 | 6 | 0 | 1 | 352 | 80 | 431 | 1.8e-196 | 694.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056680 | MS.gene45704 | 0.825098 | 5.64E-54 | -1.69E-46 |
| MS.gene056682 | MS.gene45704 | 0.846272 | 2.41E-59 | -1.69E-46 |
| MS.gene060087 | MS.gene45704 | 0.806895 | 6.59E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45704.t1 | MTR_4g069350 | 98.295 | 352 | 6 | 0 | 1 | 352 | 80 | 431 | 0.0 | 716 |
| MS.gene45704.t1 | MTR_4g069420 | 87.430 | 358 | 38 | 1 | 2 | 352 | 72 | 429 | 0.0 | 643 |
| MS.gene45704.t1 | MTR_4g069390 | 87.288 | 354 | 43 | 1 | 1 | 352 | 1 | 354 | 0.0 | 631 |
| MS.gene45704.t1 | MTR_4g069300 | 85.994 | 357 | 43 | 1 | 1 | 350 | 80 | 436 | 0.0 | 627 |
| MS.gene45704.t1 | MTR_4g069260 | 82.353 | 357 | 55 | 2 | 1 | 350 | 80 | 435 | 0.0 | 606 |
| MS.gene45704.t1 | MTR_4g069430 | 86.136 | 339 | 45 | 1 | 15 | 351 | 83 | 421 | 0.0 | 583 |
| MS.gene45704.t1 | MTR_1g022025 | 72.254 | 346 | 89 | 1 | 12 | 350 | 82 | 427 | 0.0 | 523 |
| MS.gene45704.t1 | MTR_8g069400 | 28.571 | 203 | 121 | 8 | 69 | 265 | 1378 | 1562 | 8.68e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45704.t1 | AT1G19360 | 70.670 | 358 | 96 | 3 | 1 | 350 | 71 | 427 | 0.0 | 516 |
| MS.gene45704.t1 | AT1G19360 | 70.670 | 358 | 96 | 3 | 1 | 350 | 71 | 427 | 0.0 | 516 |
| MS.gene45704.t1 | AT1G75110 | 68.908 | 357 | 103 | 2 | 1 | 350 | 72 | 427 | 0.0 | 509 |
| MS.gene45704.t1 | AT1G75120 | 68.286 | 350 | 105 | 2 | 1 | 350 | 59 | 402 | 2.78e-173 | 488 |
| MS.gene45704.t1 | AT1G70630 | 29.384 | 211 | 117 | 6 | 69 | 269 | 230 | 418 | 1.27e-16 | 81.3 |
| MS.gene45704.t1 | AT1G70630 | 29.384 | 211 | 117 | 6 | 69 | 269 | 261 | 449 | 1.45e-16 | 81.3 |
| MS.gene45704.t1 | AT1G70630 | 29.384 | 211 | 117 | 6 | 69 | 269 | 261 | 449 | 1.45e-16 | 81.3 |
| MS.gene45704.t1 | AT1G70630 | 29.384 | 211 | 117 | 6 | 69 | 269 | 398 | 586 | 1.90e-16 | 80.9 |
| MS.gene45704.t1 | AT1G70630 | 29.384 | 211 | 117 | 6 | 69 | 269 | 446 | 634 | 2.20e-16 | 80.9 |
| MS.gene45704.t1 | AT1G70630 | 29.384 | 211 | 117 | 6 | 69 | 269 | 477 | 665 | 2.60e-16 | 80.9 |
| MS.gene45704.t1 | AT1G70630 | 29.384 | 211 | 117 | 6 | 69 | 269 | 467 | 655 | 2.86e-16 | 80.5 |
Find 75 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCGGGTCTCTTTGGTAAAA+TGG | 0.121490 | 4.4:-38237747 | None:intergenic |
| CATTCCTTCAATTGAGCTTT+TGG | 0.209327 | 4.4:+38238082 | MS.gene45704:CDS |
| CATAATAACATGACAGCTTA+TGG | 0.285401 | 4.4:+38237957 | MS.gene45704:CDS |
| GTTGTTGAATATTATGTTAA+TGG | 0.296088 | 4.4:+38238353 | MS.gene45704:CDS |
| TATCATTATCCGGGTCTCTT+TGG | 0.318671 | 4.4:-38237755 | None:intergenic |
| AAGGCAACAACTAGGTAATT+AGG | 0.336091 | 4.4:-38237684 | None:intergenic |
| TCATGCTGCTAAAAGAACTA+TGG | 0.353213 | 4.4:+38238202 | MS.gene45704:CDS |
| TCTAATAAATTTGCCAATCT+CGG | 0.356388 | 4.4:-38237561 | None:intergenic |
| TTGTTGAATATTATGTTAAT+GGG | 0.359540 | 4.4:+38238354 | MS.gene45704:CDS |
| CATGTTAAAATCAGAATTAG+TGG | 0.362941 | 4.4:+38237362 | None:intergenic |
| TATACCAACTCTCTTGATAT+TGG | 0.365508 | 4.4:-38237661 | None:intergenic |
| GTTGCTTGCATTAAGTAAAC+AGG | 0.375504 | 4.4:+38237464 | MS.gene45704:CDS |
| CCGGAGACAGCCGCCCCGTT+TGG | 0.377429 | 4.4:-38237798 | None:intergenic |
| TAATTCACGTGAATAATTAC+CGG | 0.389710 | 4.4:-38238299 | None:intergenic |
| CGAGGTGTGCCATCGGGAAA+TGG | 0.401340 | 4.4:-38238395 | None:intergenic |
| CCGGGTCTCTTTGGTAAAAT+GGG | 0.403345 | 4.4:-38237746 | None:intergenic |
| ACAGTATCAATATCATTATC+CGG | 0.404384 | 4.4:-38237765 | None:intergenic |
| AGAATTAGTGGCACTCTTAT+CGG | 0.411192 | 4.4:+38237374 | MS.gene45704:CDS |
| CTAATAAATTTGCCAATCTC+GGG | 0.411225 | 4.4:-38237560 | None:intergenic |
| CCAAACGGGGCGGCTGTCTC+CGG | 0.412973 | 4.4:+38237798 | MS.gene45704:CDS |
| TGAATTCTTGAACCCGAGAT+TGG | 0.422149 | 4.4:+38237548 | MS.gene45704:CDS |
| TGATCATCTATACCGTGATT+CGG | 0.426234 | 4.4:+38237911 | MS.gene45704:CDS |
| CTCGGGTTCAAGAATTCATC+AGG | 0.455431 | 4.4:-38237543 | None:intergenic |
| AGCTCAATTGAAGGAATGGT+TGG | 0.470800 | 4.4:-38238077 | None:intergenic |
| AAAGAGTTCCTCGTTGAAAA+CGG | 0.480750 | 4.4:-38238150 | None:intergenic |
| TCAACAACTGCTTTCATTCG+CGG | 0.485251 | 4.4:-38238338 | None:intergenic |
| ATCAGGAGCAACAGTAGGAT+TGG | 0.486219 | 4.4:-38237526 | None:intergenic |
| CCTTCACATTTGAGTTTGCA+AGG | 0.492258 | 4.4:-38237617 | None:intergenic |
| TGAAGGAAATGCTCGAGGTC+TGG | 0.494327 | 4.4:+38237634 | MS.gene45704:CDS |
| TCACGGTATAGATGATCAAA+AGG | 0.505121 | 4.4:-38237906 | None:intergenic |
| GACTTTCGAAGGGGAATGCA+TGG | 0.506305 | 4.4:+38238120 | MS.gene45704:CDS |
| CAAAAGCTCAATTGAAGGAA+TGG | 0.508580 | 4.4:-38238081 | None:intergenic |
| GGTTATCGAGGTGTGCCATC+GGG | 0.509771 | 4.4:-38238401 | None:intergenic |
| TAGAATACGAAATTTAAGTC+CGG | 0.511442 | 4.4:-38237817 | None:intergenic |
| GTTATTATGACCATCGCTCA+TGG | 0.514082 | 4.4:-38237943 | None:intergenic |
| TAACCTCAGTAAATTGAAAC+CGG | 0.514324 | 4.4:+38238280 | MS.gene45704:CDS |
| CCATCACATCCTGGTTATGA+CGG | 0.520532 | 4.4:+38238176 | MS.gene45704:CDS |
| CGGTCCAAAAGCTCAATTGA+AGG | 0.530180 | 4.4:-38238086 | None:intergenic |
| GATAATGATATTGATACTGT+TGG | 0.535960 | 4.4:+38237768 | MS.gene45704:CDS |
| AAAACAGGTGAGGGAGTTGA+CGG | 0.545877 | 4.4:+38237416 | MS.gene45704:CDS |
| GCATGAAGCCCGTCATAACC+AGG | 0.559070 | 4.4:-38238185 | None:intergenic |
| CATCACATCCTGGTTATGAC+GGG | 0.559997 | 4.4:+38238177 | MS.gene45704:CDS |
| CAGTATCAATATCATTATCC+GGG | 0.561690 | 4.4:-38237764 | None:intergenic |
| TCAAAGACCATGGGATGGGT+TGG | 0.564496 | 4.4:+38237994 | MS.gene45704:CDS |
| TGTGGCAGCACGACTTTCGA+AGG | 0.565368 | 4.4:+38238109 | MS.gene45704:CDS |
| AGGTTATCGAGGTGTGCCAT+CGG | 0.565382 | 4.4:-38238402 | None:intergenic |
| GAAATGGTTTGAGAGCATCT+TGG | 0.566472 | 4.4:-38238379 | None:intergenic |
| GTCTTCAAAGACCATGGGAT+GGG | 0.567731 | 4.4:+38237990 | MS.gene45704:CDS |
| CTTCACATTTGAGTTTGCAA+GGG | 0.571821 | 4.4:-38237616 | None:intergenic |
| TCGAAAGTCGTGCTGCCACA+CGG | 0.575082 | 4.4:-38238106 | None:intergenic |
| GTTCCTCGTTGAAAACGGCT+TGG | 0.577634 | 4.4:-38238145 | None:intergenic |
| CATCGTCTAAGGCAACAACT+AGG | 0.582454 | 4.4:-38237692 | None:intergenic |
| AACGATGTCTTCAAAGACCA+TGG | 0.583875 | 4.4:+38237984 | MS.gene45704:CDS |
| CCTTGCAAACTCAAATGTGA+AGG | 0.591600 | 4.4:+38237617 | MS.gene45704:CDS |
| GTGGCAGCACGACTTTCGAA+GGG | 0.594024 | 4.4:+38238110 | MS.gene45704:CDS |
| TTCACCAATATCAAGAGAGT+TGG | 0.596908 | 4.4:+38237657 | MS.gene45704:CDS |
| AATGCCTTGACAGTACCAAA+AGG | 0.604979 | 4.4:-38237498 | None:intergenic |
| CCGTCATAACCAGGATGTGA+TGG | 0.606127 | 4.4:-38238176 | None:intergenic |
| TCATTCGCGGAAGCTTATCA+CGG | 0.615337 | 4.4:-38238325 | None:intergenic |
| TGGATTCAACATCCGAATCA+CGG | 0.620285 | 4.4:-38237923 | None:intergenic |
| AATTCATCAGGAGCAACAGT+AGG | 0.620675 | 4.4:-38237531 | None:intergenic |
| TGTCTTCAAAGACCATGGGA+TGG | 0.621538 | 4.4:+38237989 | MS.gene45704:CDS |
| TAGTAGACCAACCCATCCCA+TGG | 0.627281 | 4.4:-38238001 | None:intergenic |
| GATGTTGAATCCATGAGCGA+TGG | 0.628620 | 4.4:+38237933 | MS.gene45704:CDS |
| ACGATGTCTTCAAAGACCAT+GGG | 0.646143 | 4.4:+38237985 | MS.gene45704:CDS |
| ACATAGAAACAAGGTTATCG+AGG | 0.646977 | 4.4:-38238413 | None:intergenic |
| AAATGTGAAGGAAATGCTCG+AGG | 0.650279 | 4.4:+38237629 | MS.gene45704:CDS |
| CAGGTGAGGGAGTTGACGGA+AGG | 0.652925 | 4.4:+38237420 | MS.gene45704:CDS |
| ACTTTCGAAGGGGAATGCAT+GGG | 0.655092 | 4.4:+38238121 | MS.gene45704:CDS |
| CTACTAACGTTTATACGACG+AGG | 0.660402 | 4.4:+38238018 | MS.gene45704:CDS |
| TTACCGGTTTCAATTTACTG+AGG | 0.667376 | 4.4:-38238283 | None:intergenic |
| GTTGACGGAAGGAAAAGACC+AGG | 0.673638 | 4.4:+38237431 | MS.gene45704:CDS |
| GCTCTCAAACCATTTCCCGA+TGG | 0.676608 | 4.4:+38238386 | MS.gene45704:CDS |
| TGGCAGCACGACTTTCGAAG+GGG | 0.696691 | 4.4:+38238111 | MS.gene45704:CDS |
| TTCGCGGAAGCTTATCACGG+TGG | 0.727930 | 4.4:-38238322 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTTGAATATTATGTTAAT+GGG | + | chr4.4:38238354-38238373 | MS.gene45704:CDS | 15.0% |
| !! | GTTGTTGAATATTATGTTAA+TGG | + | chr4.4:38238353-38238372 | MS.gene45704:CDS | 20.0% |
| ! | ACAGTATCAATATCATTATC+CGG | - | chr4.4:38237768-38237787 | None:intergenic | 25.0% |
| ! | GATAATGATATTGATACTGT+TGG | + | chr4.4:38237768-38237787 | MS.gene45704:CDS | 25.0% |
| ! | TAATTCACGTGAATAATTAC+CGG | - | chr4.4:38238302-38238321 | None:intergenic | 25.0% |
| ! | TAGAATACGAAATTTAAGTC+CGG | - | chr4.4:38237820-38237839 | None:intergenic | 25.0% |
| ! | TCTAATAAATTTGCCAATCT+CGG | - | chr4.4:38237564-38237583 | None:intergenic | 25.0% |
| !!! | AGGATATTTGTTTTCAATTC+TGG | + | chr4.4:38238038-38238057 | MS.gene45704:CDS | 25.0% |
| ACTGTTGGAAAAATTCCAAA+CGG | + | chr4.4:38237783-38237802 | MS.gene45704:CDS | 30.0% | |
| CAGTATCAATATCATTATCC+GGG | - | chr4.4:38237767-38237786 | None:intergenic | 30.0% | |
| CATAATAACATGACAGCTTA+TGG | + | chr4.4:38237957-38237976 | MS.gene45704:CDS | 30.0% | |
| CTAATAAATTTGCCAATCTC+GGG | - | chr4.4:38237563-38237582 | None:intergenic | 30.0% | |
| TAACCTCAGTAAATTGAAAC+CGG | + | chr4.4:38238280-38238299 | MS.gene45704:CDS | 30.0% | |
| TATACCAACTCTCTTGATAT+TGG | - | chr4.4:38237664-38237683 | None:intergenic | 30.0% | |
| TTAAGTAAACAGGAAAAAGC+TGG | + | chr4.4:38237474-38237493 | MS.gene45704:CDS | 30.0% | |
| ! | CTAAGAGAATTTTTGCAGTT+GGG | + | chr4.4:38237837-38237856 | MS.gene45704:CDS | 30.0% |
| ! | TCTAAGAGAATTTTTGCAGT+TGG | + | chr4.4:38237836-38237855 | MS.gene45704:CDS | 30.0% |
| AAAGAGTTCCTCGTTGAAAA+CGG | - | chr4.4:38238153-38238172 | None:intergenic | 35.0% | |
| AAATGCAGAGCTGAAAAAAC+AGG | + | chr4.4:38237401-38237420 | MS.gene45704:CDS | 35.0% | |
| AAGGCAACAACTAGGTAATT+AGG | - | chr4.4:38237687-38237706 | None:intergenic | 35.0% | |
| AGAATTAGTGGCACTCTTAT+CGG | + | chr4.4:38237374-38237393 | MS.gene45704:CDS | 35.0% | |
| CAAAAGCTCAATTGAAGGAA+TGG | - | chr4.4:38238084-38238103 | None:intergenic | 35.0% | |
| CTGTTGGAAAAATTCCAAAC+GGG | + | chr4.4:38237784-38237803 | MS.gene45704:CDS | 35.0% | |
| GTTGCTTGCATTAAGTAAAC+AGG | + | chr4.4:38237464-38237483 | MS.gene45704:CDS | 35.0% | |
| TCACGGTATAGATGATCAAA+AGG | - | chr4.4:38237909-38237928 | None:intergenic | 35.0% | |
| TCATGCTGCTAAAAGAACTA+TGG | + | chr4.4:38238202-38238221 | MS.gene45704:CDS | 35.0% | |
| TGATCATCTATACCGTGATT+CGG | + | chr4.4:38237911-38237930 | MS.gene45704:CDS | 35.0% | |
| TGTTGGAAAAATTCCAAACG+GGG | + | chr4.4:38237785-38237804 | MS.gene45704:CDS | 35.0% | |
| TTCACCAATATCAAGAGAGT+TGG | + | chr4.4:38237657-38237676 | MS.gene45704:CDS | 35.0% | |
| ! | CATTCCTTCAATTGAGCTTT+TGG | + | chr4.4:38238082-38238101 | MS.gene45704:CDS | 35.0% |
| ! | CTTCACATTTGAGTTTGCAA+GGG | - | chr4.4:38237619-38237638 | None:intergenic | 35.0% |
| ! | TTTTGCAATCTCATCGTCTA+AGG | - | chr4.4:38237706-38237725 | None:intergenic | 35.0% |
| !! | TTACCGGTTTCAATTTACTG+AGG | - | chr4.4:38238286-38238305 | None:intergenic | 35.0% |
| AAATGTGAAGGAAATGCTCG+AGG | + | chr4.4:38237629-38237648 | MS.gene45704:CDS | 40.0% | |
| AACGATGTCTTCAAAGACCA+TGG | + | chr4.4:38237984-38238003 | MS.gene45704:CDS | 40.0% | |
| AATGCCTTGACAGTACCAAA+AGG | - | chr4.4:38237501-38237520 | None:intergenic | 40.0% | |
| AATTCATCAGGAGCAACAGT+AGG | - | chr4.4:38237534-38237553 | None:intergenic | 40.0% | |
| ACGATGTCTTCAAAGACCAT+GGG | + | chr4.4:38237985-38238004 | MS.gene45704:CDS | 40.0% | |
| AGAGCTGAAAAAACAGGTGA+GGG | + | chr4.4:38237407-38237426 | MS.gene45704:CDS | 40.0% | |
| AGCTCAATTGAAGGAATGGT+TGG | - | chr4.4:38238080-38238099 | None:intergenic | 40.0% | |
| CCTTGCAAACTCAAATGTGA+AGG | + | chr4.4:38237617-38237636 | MS.gene45704:CDS | 40.0% | |
| CTACTAACGTTTATACGACG+AGG | + | chr4.4:38238018-38238037 | MS.gene45704:CDS | 40.0% | |
| GTTATTATGACCATCGCTCA+TGG | - | chr4.4:38237946-38237965 | None:intergenic | 40.0% | |
| TATCATTATCCGGGTCTCTT+TGG | - | chr4.4:38237758-38237777 | None:intergenic | 40.0% | |
| TCAACAACTGCTTTCATTCG+CGG | - | chr4.4:38238341-38238360 | None:intergenic | 40.0% | |
| TGAATTCTTGAACCCGAGAT+TGG | + | chr4.4:38237548-38237567 | MS.gene45704:CDS | 40.0% | |
| TGGATTCAACATCCGAATCA+CGG | - | chr4.4:38237926-38237945 | None:intergenic | 40.0% | |
| ! | CCTTCACATTTGAGTTTGCA+AGG | - | chr4.4:38237620-38237639 | None:intergenic | 40.0% |
| ! | CTCTTTTATCCATCACATCC+TGG | + | chr4.4:38238167-38238186 | MS.gene45704:CDS | 40.0% |
| ! | TGAACAGCAGAGTTCTTTTC+AGG | + | chr4.4:38238240-38238259 | MS.gene45704:CDS | 40.0% |
| !! | GAAATGGTTTGAGAGCATCT+TGG | - | chr4.4:38238382-38238401 | None:intergenic | 40.0% |
| !!! | CAAGCAACTTTTTTTCAGCC+TGG | - | chr4.4:38237452-38237471 | None:intergenic | 40.0% |
| AAAACAGGTGAGGGAGTTGA+CGG | + | chr4.4:38237416-38237435 | MS.gene45704:CDS | 45.0% | |
| ACTTTCGAAGGGGAATGCAT+GGG | + | chr4.4:38238121-38238140 | MS.gene45704:CDS | 45.0% | |
| ATCAGGAGCAACAGTAGGAT+TGG | - | chr4.4:38237529-38237548 | None:intergenic | 45.0% | |
| CAGAGCTGAAAAAACAGGTG+AGG | + | chr4.4:38237406-38237425 | MS.gene45704:CDS | 45.0% | |
| CATCACATCCTGGTTATGAC+GGG | + | chr4.4:38238177-38238196 | MS.gene45704:CDS | 45.0% | |
| CCATCACATCCTGGTTATGA+CGG | + | chr4.4:38238176-38238195 | MS.gene45704:CDS | 45.0% | |
| CCGGGTCTCTTTGGTAAAAT+GGG | - | chr4.4:38237749-38237768 | None:intergenic | 45.0% | |
| CGGTCCAAAAGCTCAATTGA+AGG | - | chr4.4:38238089-38238108 | None:intergenic | 45.0% | |
| CTCGGGTTCAAGAATTCATC+AGG | - | chr4.4:38237546-38237565 | None:intergenic | 45.0% | |
| GATGTTGAATCCATGAGCGA+TGG | + | chr4.4:38237933-38237952 | MS.gene45704:CDS | 45.0% | |
| GTCTTCAAAGACCATGGGAT+GGG | + | chr4.4:38237990-38238009 | MS.gene45704:CDS | 45.0% | |
| TCATTCGCGGAAGCTTATCA+CGG | - | chr4.4:38238328-38238347 | None:intergenic | 45.0% | |
| TCCGGGTCTCTTTGGTAAAA+TGG | - | chr4.4:38237750-38237769 | None:intergenic | 45.0% | |
| TGGAAAAATTCCAAACGGGG+CGG | + | chr4.4:38237788-38237807 | MS.gene45704:CDS | 45.0% | |
| TGTCTTCAAAGACCATGGGA+TGG | + | chr4.4:38237989-38238008 | MS.gene45704:CDS | 45.0% | |
| ! | AATTGAGCTTTTGGACCGTG+TGG | + | chr4.4:38238091-38238110 | MS.gene45704:CDS | 45.0% |
| ! | CAGGAAAAAGCTGGACCTTT+TGG | + | chr4.4:38237483-38237502 | MS.gene45704:CDS | 45.0% |
| ! | CATCGTCTAAGGCAACAACT+AGG | - | chr4.4:38237695-38237714 | None:intergenic | 45.0% |
| ! | CCCATTTTACCAAAGAGACC+CGG | + | chr4.4:38237746-38237765 | MS.gene45704:CDS | 45.0% |
| ! | TGGACCTTTTGGTACTGTCA+AGG | + | chr4.4:38237494-38237513 | MS.gene45704:CDS | 45.0% |
| !! | GAGTTCTTTTCAGGACAGTG+AGG | + | chr4.4:38238249-38238268 | MS.gene45704:CDS | 45.0% |
| CCGTCATAACCAGGATGTGA+TGG | - | chr4.4:38238179-38238198 | None:intergenic | 50.0% | |
| GACTTTCGAAGGGGAATGCA+TGG | + | chr4.4:38238120-38238139 | MS.gene45704:CDS | 50.0% | |
| GCTCTCAAACCATTTCCCGA+TGG | + | chr4.4:38238386-38238405 | MS.gene45704:CDS | 50.0% | |
| GTTCCTCGTTGAAAACGGCT+TGG | - | chr4.4:38238148-38238167 | None:intergenic | 50.0% | |
| GTTGACGGAAGGAAAAGACC+AGG | + | chr4.4:38237431-38237450 | MS.gene45704:CDS | 50.0% | |
| TAGTAGACCAACCCATCCCA+TGG | - | chr4.4:38238004-38238023 | None:intergenic | 50.0% | |
| TCAAAGACCATGGGATGGGT+TGG | + | chr4.4:38237994-38238013 | MS.gene45704:CDS | 50.0% | |
| TGAAGGAAATGCTCGAGGTC+TGG | + | chr4.4:38237634-38237653 | MS.gene45704:CDS | 50.0% | |
| GCATGAAGCCCGTCATAACC+AGG | - | chr4.4:38238188-38238207 | None:intergenic | 55.0% | |
| GTGGCAGCACGACTTTCGAA+GGG | + | chr4.4:38238110-38238129 | MS.gene45704:CDS | 55.0% | |
| TCGAAAGTCGTGCTGCCACA+CGG | - | chr4.4:38238109-38238128 | None:intergenic | 55.0% | |
| TGGCAGCACGACTTTCGAAG+GGG | + | chr4.4:38238111-38238130 | MS.gene45704:CDS | 55.0% | |
| TGTGGCAGCACGACTTTCGA+AGG | + | chr4.4:38238109-38238128 | MS.gene45704:CDS | 55.0% | |
| TTCGCGGAAGCTTATCACGG+TGG | - | chr4.4:38238325-38238344 | None:intergenic | 55.0% | |
| !! | GGACCAAGCCGTTTTCAACG+AGG | + | chr4.4:38238142-38238161 | MS.gene45704:CDS | 55.0% |
| CAGGTGAGGGAGTTGACGGA+AGG | + | chr4.4:38237420-38237439 | MS.gene45704:CDS | 60.0% | |
| CGAGGTGTGCCATCGGGAAA+TGG | - | chr4.4:38238398-38238417 | None:intergenic | 60.0% | |
| CCAAACGGGGCGGCTGTCTC+CGG | + | chr4.4:38237798-38237817 | MS.gene45704:CDS | 70.0% | |
| CCGGAGACAGCCGCCCCGTT+TGG | - | chr4.4:38237801-38237820 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 38237363 | 38238421 | 38237363 | ID=MS.gene45704 |
| chr4.4 | mRNA | 38237363 | 38238421 | 38237363 | ID=MS.gene45704.t1;Parent=MS.gene45704 |
| chr4.4 | exon | 38237363 | 38238421 | 38237363 | ID=MS.gene45704.t1.exon1;Parent=MS.gene45704.t1 |
| chr4.4 | CDS | 38237363 | 38238421 | 38237363 | ID=cds.MS.gene45704.t1;Parent=MS.gene45704.t1 |
| Gene Sequence |
| Protein sequence |
