Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45929.t1 | XP_024626487.1 | 82 | 362 | 32 | 2 | 1 | 332 | 1 | 359 | 1.20E-158 | 569.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45929.t1 | A0A072U1T4 | 82.0 | 362 | 32 | 2 | 1 | 332 | 1 | 359 | 8.4e-159 | 569.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene45929 | 0.815202 | 1.04E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene45929 | 0.805105 | 1.57E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene45929 | 0.810818 | 9.54E-51 | -1.69E-46 |
| MS.gene052584 | MS.gene45929 | 0.84071 | 7.38E-58 | -1.69E-46 |
| MS.gene054991 | MS.gene45929 | 0.845864 | 3.11E-59 | -1.69E-46 |
| MS.gene056050 | MS.gene45929 | 0.812089 | 5.05E-51 | -1.69E-46 |
| MS.gene059570 | MS.gene45929 | 0.82059 | 6.33E-53 | -1.69E-46 |
| MS.gene059625 | MS.gene45929 | 0.830664 | 2.59E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45929.t1 | MTR_7g066880 | 82.044 | 362 | 32 | 2 | 1 | 332 | 1 | 359 | 0.0 | 585 |
| MS.gene45929.t1 | MTR_7g066890 | 53.719 | 363 | 132 | 4 | 1 | 328 | 2 | 363 | 3.92e-117 | 343 |
| MS.gene45929.t1 | MTR_7g066890 | 48.000 | 400 | 135 | 4 | 1 | 328 | 67 | 465 | 3.31e-109 | 326 |
| MS.gene45929.t1 | MTR_8g098880 | 34.100 | 261 | 120 | 5 | 1 | 209 | 1 | 261 | 6.37e-35 | 129 |
| MS.gene45929.t1 | MTR_7g066920 | 65.753 | 73 | 25 | 0 | 145 | 217 | 1 | 73 | 4.29e-27 | 102 |
| MS.gene45929.t1 | MTR_7g067580 | 34.091 | 176 | 81 | 2 | 69 | 209 | 9 | 184 | 1.46e-24 | 99.4 |
| MS.gene45929.t1 | MTR_7g066970 | 37.755 | 196 | 85 | 2 | 41 | 209 | 66 | 251 | 2.35e-22 | 95.1 |
| MS.gene45929.t1 | MTR_7g078120 | 28.000 | 225 | 132 | 6 | 114 | 310 | 312 | 534 | 2.73e-12 | 68.2 |
| MS.gene45929.t1 | MTR_7g078120 | 28.000 | 225 | 132 | 6 | 114 | 310 | 312 | 534 | 2.98e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45929.t1 | AT5G04110 | 31.892 | 185 | 90 | 3 | 168 | 316 | 340 | 524 | 2.33e-22 | 98.2 |
| MS.gene45929.t1 | AT5G04110 | 31.892 | 185 | 90 | 3 | 168 | 316 | 340 | 524 | 2.33e-22 | 98.2 |
| MS.gene45929.t1 | AT5G04110 | 31.892 | 185 | 90 | 3 | 168 | 316 | 341 | 525 | 2.36e-22 | 98.2 |
| MS.gene45929.t1 | AT5G04110 | 31.515 | 165 | 77 | 3 | 168 | 296 | 340 | 504 | 1.25e-16 | 80.9 |
Find 54 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACTTTGATGATTCTATTA+AGG | 0.192630 | 7.2:-45499854 | MS.gene45929:CDS |
| TATCCATGCTAGAGATTTAA+TGG | 0.193139 | 7.2:-45499797 | MS.gene45929:CDS |
| TTCAAGCTGAAGTTCGTAAA+TGG | 0.225040 | 7.2:-45499627 | MS.gene45929:CDS |
| TGAGTTCCTTCTTTGATCTT+TGG | 0.253488 | 7.2:+45500002 | None:intergenic |
| TTAACACGATTAACTAATTC+AGG | 0.268218 | 7.2:+45499550 | None:intergenic |
| GACTTTGATGATTCTATTAA+GGG | 0.305104 | 7.2:-45499853 | MS.gene45929:CDS |
| ACTTACCATCATTTATGTAT+TGG | 0.365830 | 7.2:+45500076 | None:intergenic |
| CTAGGTCCAATGGGAATAAC+TGG | 0.367656 | 7.2:+45499652 | None:intergenic |
| GTCTCTATACTCATACATCT+AGG | 0.386269 | 7.2:+45499280 | None:intergenic |
| TGCATTGTCATTTAGAGAAA+GGG | 0.401303 | 7.2:+45499918 | None:intergenic |
| TCATCATGCTCGTCATAGAT+TGG | 0.403542 | 7.2:+45499326 | None:intergenic |
| AAGAATATGCTTTAAAATCA+TGG | 0.406708 | 7.2:-45499447 | MS.gene45929:CDS |
| ATGATAAAGATACGATGATA+TGG | 0.421547 | 7.2:-45502679 | None:intergenic |
| TTGCATTGTCATTTAGAGAA+AGG | 0.429592 | 7.2:+45499917 | None:intergenic |
| CCAATGGGAATAACTGGTCT+TGG | 0.436450 | 7.2:+45499658 | None:intergenic |
| AACTGCACCTAAGGGAGATC+TGG | 0.441097 | 7.2:+45499258 | None:intergenic |
| AGCTAGAGAATGCTTAAAAT+CGG | 0.441855 | 7.2:-45499512 | MS.gene45929:CDS |
| TCAAGCTGAAGTTCGTAAAT+GGG | 0.444773 | 7.2:-45499626 | MS.gene45929:CDS |
| GGAAGATGGTTACCCCTAGA+AGG | 0.456123 | 7.2:+45499679 | None:intergenic |
| CGAACTTCAGCTTGAAACCT+AGG | 0.456711 | 7.2:+45499634 | None:intergenic |
| AAACTTCCGACTTGAATAAC+CGG | 0.459854 | 7.2:+45499480 | None:intergenic |
| CCAAGACCAGTTATTCCCAT+TGG | 0.466479 | 7.2:-45499658 | MS.gene45929:CDS |
| CATCATGCTCGTCATAGATT+GGG | 0.471583 | 7.2:+45499327 | None:intergenic |
| TTCACGATCAACTGCACCTA+AGG | 0.479534 | 7.2:+45499249 | None:intergenic |
| TCTATCATGTTCTGCACTAT+CGG | 0.487951 | 7.2:-45499971 | MS.gene45929:CDS |
| GTGAGTAATCGATATTTGTA+TGG | 0.495621 | 7.2:-45499775 | MS.gene45929:CDS |
| ATCTGTAAAGAGAAATATAG+TGG | 0.502905 | 7.2:-45500033 | MS.gene45929:CDS |
| TTTAACCAATACATAAATGA+TGG | 0.525857 | 7.2:-45500081 | MS.gene45929:CDS |
| TAGAATCATCAAAGTCACTT+AGG | 0.526045 | 7.2:+45499860 | None:intergenic |
| AGCTTGAAACCTAGGTCCAA+TGG | 0.530844 | 7.2:+45499642 | None:intergenic |
| GAATAACTGGTCTTGGAAGA+TGG | 0.535998 | 7.2:+45499665 | None:intergenic |
| GCTTGAAACCTAGGTCCAAT+GGG | 0.536651 | 7.2:+45499643 | None:intergenic |
| CAGTTATTCCCATTGGACCT+AGG | 0.541236 | 7.2:-45499651 | MS.gene45929:CDS |
| AAAATGCCAAAGATCAAAGA+AGG | 0.541347 | 7.2:-45500008 | MS.gene45929:CDS |
| TTAAAATCGGAGATTGATAC+CGG | 0.555035 | 7.2:-45499499 | MS.gene45929:CDS |
| TTGATACCGGTTATTCAAGT+CGG | 0.555858 | 7.2:-45499486 | MS.gene45929:CDS |
| TCATGTTCTGCACTATCGGA+TGG | 0.557424 | 7.2:-45499967 | MS.gene45929:CDS |
| ATAGAGACCAGATCTCCCTT+AGG | 0.562925 | 7.2:-45499265 | MS.gene45929:CDS |
| GATAGTGCAGAACATGATAG+AGG | 0.563241 | 7.2:+45499973 | None:intergenic |
| GAAATCAAAAGAGGAAGACA+TGG | 0.565129 | 7.2:-45499731 | MS.gene45929:CDS |
| GAGCATAGCATGTTTCATGT+TGG | 0.569427 | 7.2:+45499594 | None:intergenic |
| TATAGCTTTCAAACCTTGTG+AGG | 0.569964 | 7.2:-45502648 | MS.gene45929:CDS |
| TCTCTATACTCATACATCTA+GGG | 0.574198 | 7.2:+45499281 | None:intergenic |
| GCATTGTCATTTAGAGAAAG+GGG | 0.580604 | 7.2:+45499919 | None:intergenic |
| AATCGAGGAGAAATCAAAAG+AGG | 0.585629 | 7.2:-45499740 | MS.gene45929:CDS |
| TCACCATTAAATCTCTAGCA+TGG | 0.596500 | 7.2:+45499794 | None:intergenic |
| TGTGATGACTTCTCCTCACA+AGG | 0.606079 | 7.2:+45502635 | None:intergenic |
| TCACGATCAACTGCACCTAA+GGG | 0.610761 | 7.2:+45499250 | None:intergenic |
| GCTGAAGTTCGTAAATGGGA+TGG | 0.617058 | 7.2:-45499622 | MS.gene45929:CDS |
| GCACTATCGGATGGAACACA+AGG | 0.625934 | 7.2:-45499958 | MS.gene45929:CDS |
| ATGCTCGTCATAGATTGGGA+TGG | 0.629267 | 7.2:+45499331 | None:intergenic |
| TGCTTTAAAATCATGGACAG+TGG | 0.637188 | 7.2:-45499440 | MS.gene45929:CDS |
| TAAAGCTATCTTGATTCACA+AGG | 0.651202 | 7.2:+45499821 | None:intergenic |
| TGGTATCGAGACATCAATCG+AGG | 0.690402 | 7.2:-45499755 | MS.gene45929:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTAAATTGAAATTATTTA+GGG | + | chr7.2:45500318-45500337 | None:intergenic | 10.0% |
| !! | GAAGTAATTTAAAAAAAAAA+AGG | - | chr7.2:45500717-45500736 | MS.gene45929:intron | 10.0% |
| !! | TAATGTATAAATTTCATAAT+CGG | + | chr7.2:45500794-45500813 | None:intergenic | 10.0% |
| !!! | ATGATGATTTTTTTTTTTAA+TGG | - | chr7.2:45500237-45500256 | MS.gene45929:intron | 10.0% |
| !!! | TAAAGTATAATTTTCTAAAA+AGG | - | chr7.2:45501664-45501683 | MS.gene45929:intron | 10.0% |
| !!! | TTTATTTTTGAGAAAATTTA+TGG | - | chr7.2:45500584-45500603 | MS.gene45929:intron | 10.0% |
| !!! | TTTTGAATTAAAAAACTATT+TGG | - | chr7.2:45500139-45500158 | MS.gene45929:intron | 10.0% |
| !! | AGTTTAACATAATCATATAA+TGG | - | chr7.2:45500945-45500964 | MS.gene45929:intron | 15.0% |
| !! | ATTTAAAAAAAAAAAGGTGA+AGG | - | chr7.2:45500723-45500742 | MS.gene45929:intron | 15.0% |
| !! | CATCTAAATTGAAATTATTT+AGG | + | chr7.2:45500319-45500338 | None:intergenic | 15.0% |
| !! | CTCTAAATTGAAATTATTTA+GGG | + | chr7.2:45500082-45500101 | None:intergenic | 15.0% |
| !! | TTATAAAAACAAACAACTTA+TGG | + | chr7.2:45501178-45501197 | None:intergenic | 15.0% |
| !! | TTTAAAAAAAAAAAGGTGAA+GGG | - | chr7.2:45500724-45500743 | MS.gene45929:intron | 15.0% |
| !!! | AGAAAATAATTTTGATTCTT+AGG | + | chr7.2:45501755-45501774 | None:intergenic | 15.0% |
| !!! | AGATGTAATTTTAACTAAAA+AGG | + | chr7.2:45499672-45499691 | None:intergenic | 15.0% |
| !!! | CATTATTTAAGTCTTATTTA+AGG | - | chr7.2:45499422-45499441 | MS.gene45929:CDS | 15.0% |
| !!! | TATAATTTTCTAAAAAGGTA+AGG | - | chr7.2:45501669-45501688 | MS.gene45929:intron | 15.0% |
| !! | AAAAATATAGTTACGCTTTA+TGG | + | chr7.2:45501294-45501313 | None:intergenic | 20.0% |
| !! | AAATTTACTAGTATTCCTTT+AGG | + | chr7.2:45500542-45500561 | None:intergenic | 20.0% |
| !! | AATAAATACGTCAATTCAAA+CGG | - | chr7.2:45501267-45501286 | MS.gene45929:intron | 20.0% |
| !! | CCTAAATAATTTCAATTTAG+AGG | - | chr7.2:45500080-45500099 | MS.gene45929:CDS | 20.0% |
| !! | CCTCTAAATTGAAATTATTT+AGG | + | chr7.2:45500083-45500102 | None:intergenic | 20.0% |
| !! | GAAACTTAAAAACAAAGTAA+CGG | + | chr7.2:45499574-45499593 | None:intergenic | 20.0% |
| !! | TAAGAAAAAATATTTCTCTC+AGG | + | chr7.2:45500909-45500928 | None:intergenic | 20.0% |
| !! | TATAGAATTGAACATTAGAA+GGG | + | chr7.2:45500686-45500705 | None:intergenic | 20.0% |
| !! | TTAAAAAAAAAAAGGTGAAG+GGG | - | chr7.2:45500725-45500744 | MS.gene45929:intron | 20.0% |
| !! | TTTAACCAATACATAAATGA+TGG | - | chr7.2:45501818-45501837 | MS.gene45929:intron | 20.0% |
| !!! | AAAGCGTAACTATATTTTTA+AGG | - | chr7.2:45501295-45501314 | MS.gene45929:intron | 20.0% |
| !!! | AACTTTTGAAATGATTTCAA+AGG | + | chr7.2:45501563-45501582 | None:intergenic | 20.0% |
| !!! | AAGAATATGCTTTAAAATCA+TGG | - | chr7.2:45502452-45502471 | MS.gene45929:intron | 20.0% |
| !!! | AAGCGTAACTATATTTTTAA+GGG | - | chr7.2:45501296-45501315 | MS.gene45929:intron | 20.0% |
| !!! | AATGATATTTTGACAACTTT+TGG | - | chr7.2:45499714-45499733 | MS.gene45929:CDS | 20.0% |
| !!! | AGTAAAATTCTTCTAAAATG+AGG | + | chr7.2:45500989-45501008 | None:intergenic | 20.0% |
| !!! | ATTCAAATTTCTCTAAAAAG+TGG | + | chr7.2:45500652-45500671 | None:intergenic | 20.0% |
| !!! | ATTTTAATGGTTCAATTTCT+TGG | - | chr7.2:45500014-45500033 | MS.gene45929:CDS | 20.0% |
| !!! | CAGTCTTTTAAATCATAAAA+TGG | - | chr7.2:45499543-45499562 | MS.gene45929:CDS | 20.0% |
| !!! | CGAAATTTTTTTAACACATT+TGG | - | chr7.2:45500449-45500468 | MS.gene45929:intron | 20.0% |
| !!! | GAATGTAGTTTTAATATCAT+TGG | - | chr7.2:45501323-45501342 | MS.gene45929:intron | 20.0% |
| !!! | GATCAAAATGATGATTTTAA+TGG | - | chr7.2:45500001-45500020 | MS.gene45929:CDS | 20.0% |
| !!! | TAAAGTTGATGTGTATATAA+CGG | - | chr7.2:45499613-45499632 | MS.gene45929:CDS | 20.0% |
| !!! | TAAGCAATTTTTGATAGAAA+TGG | - | chr7.2:45500425-45500444 | MS.gene45929:intron | 20.0% |
| !!! | TTTTTTTTGTATATCAGAAG+AGG | - | chr7.2:45501792-45501811 | MS.gene45929:intron | 20.0% |
| ! | AAATAATGTATACATACCTG+TGG | + | chr7.2:45499351-45499370 | None:intergenic | 25.0% |
| ! | AATAAGAAGTGAGAAAAACA+AGG | - | chr7.2:45499811-45499830 | MS.gene45929:CDS | 25.0% |
| ! | ACCTCAAATAAAAATTGACT+AGG | - | chr7.2:45499898-45499917 | MS.gene45929:CDS | 25.0% |
| ! | ACTTACCATCATTTATGTAT+TGG | + | chr7.2:45501826-45501845 | None:intergenic | 25.0% |
| ! | ATCTGTAAAGAGAAATATAG+TGG | - | chr7.2:45501866-45501885 | MS.gene45929:intron | 25.0% |
| ! | CATAATTACTTCTCAAGATA+AGG | + | chr7.2:45500853-45500872 | None:intergenic | 25.0% |
| ! | CATGTCTAATATGAATTCAA+TGG | - | chr7.2:45499972-45499991 | MS.gene45929:CDS | 25.0% |
| ! | GTATAGAATTGAACATTAGA+AGG | + | chr7.2:45500687-45500706 | None:intergenic | 25.0% |
| ! | GTATTAGACATAATACATTG+TGG | + | chr7.2:45500189-45500208 | None:intergenic | 25.0% |
| ! | TAAATAATATAAAAGACCGC+AGG | + | chr7.2:45499480-45499499 | None:intergenic | 25.0% |
| ! | TCAACAAAATTGTCATCAAA+TGG | - | chr7.2:45499837-45499856 | MS.gene45929:CDS | 25.0% |
| ! | TCTCAAAGACAATTGTAAAA+TGG | - | chr7.2:45501505-45501524 | MS.gene45929:intron | 25.0% |
| ! | TTAACACGATTAACTAATTC+AGG | + | chr7.2:45502352-45502371 | None:intergenic | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | + | chr7.2:45499799-45499818 | None:intergenic | 25.0% |
| ! | TTGAAATGATTTCAAAGGTA+AGG | + | chr7.2:45501558-45501577 | None:intergenic | 25.0% |
| !! | AAAAGGTAAGGATTAACTTT+TGG | - | chr7.2:45501681-45501700 | MS.gene45929:intron | 25.0% |
| !! | AAGAATGAATATTTTGTCCA+TGG | - | chr7.2:45501423-45501442 | MS.gene45929:intron | 25.0% |
| !! | AGAATGAATATTTTGTCCAT+GGG | - | chr7.2:45501424-45501443 | MS.gene45929:intron | 25.0% |
| !! | GACTTTGATGATTCTATTAA+GGG | - | chr7.2:45502046-45502065 | MS.gene45929:intron | 25.0% |
| !! | TGACTTTGATGATTCTATTA+AGG | - | chr7.2:45502045-45502064 | MS.gene45929:intron | 25.0% |
| !! | TTAAGGTGTCTCAATTTAAA+AGG | - | chr7.2:45499439-45499458 | MS.gene45929:CDS | 25.0% |
| !! | TTATGTCTCTAAAAGTTACA+AGG | + | chr7.2:45501476-45501495 | None:intergenic | 25.0% |
| !!! | GGTCGTTAATTTTATTTACA+AGG | - | chr7.2:45501526-45501545 | MS.gene45929:intron | 25.0% |
| !!! | GTAACTATATTTTTAAGGGA+GGG | - | chr7.2:45501300-45501319 | MS.gene45929:intron | 25.0% |
| !!! | TAACTATATTTTTAAGGGAG+GGG | - | chr7.2:45501301-45501320 | MS.gene45929:intron | 25.0% |
| !!! | TAGTTTTAATATCATTGGAG+AGG | - | chr7.2:45501328-45501347 | MS.gene45929:intron | 25.0% |
| !!! | TTGTTTTTCTCACTTCTTAT+TGG | + | chr7.2:45499812-45499831 | None:intergenic | 25.0% |
| !!! | TTTTAACTAAAAAGGCCTAA+AGG | + | chr7.2:45499664-45499683 | None:intergenic | 25.0% |
| AAAACAATGGAGAGAGAAAA+AGG | + | chr7.2:45499786-45499805 | None:intergenic | 30.0% | |
| AAAAGACCGCAAAATGTATT+TGG | - | chr7.2:45500516-45500535 | MS.gene45929:intron | 30.0% | |
| AAAATGCCAAAGATCAAAGA+AGG | - | chr7.2:45501891-45501910 | MS.gene45929:intron | 30.0% | |
| AATCGTGTTAAAAAACGCAT+TGG | - | chr7.2:45502361-45502380 | MS.gene45929:intron | 30.0% | |
| ACCAATTGAGATGATTTCAA+AGG | - | chr7.2:45501599-45501618 | MS.gene45929:intron | 30.0% | |
| AGCTAGAGAATGCTTAAAAT+CGG | - | chr7.2:45502387-45502406 | MS.gene45929:intron | 30.0% | |
| GATATAACAAATACATCCTG+CGG | - | chr7.2:45499461-45499480 | MS.gene45929:CDS | 30.0% | |
| GTCTAATACGATGATTTCAA+TGG | - | chr7.2:45500200-45500219 | MS.gene45929:intron | 30.0% | |
| GTGAGTAATCGATATTTGTA+TGG | - | chr7.2:45502124-45502143 | MS.gene45929:intron | 30.0% | |
| TAAAGCTATCTTGATTCACA+AGG | + | chr7.2:45502081-45502100 | None:intergenic | 30.0% | |
| TAATGGTTCAATTTCTTGGT+CGG | - | chr7.2:45500018-45500037 | MS.gene45929:CDS | 30.0% | |
| TAGAATCATCAAAGTCACTT+AGG | + | chr7.2:45502042-45502061 | None:intergenic | 30.0% | |
| TATCCATGCTAGAGATTTAA+TGG | - | chr7.2:45502102-45502121 | MS.gene45929:intron | 30.0% | |
| TATTATCCATAAGCTTGTCA+AGG | + | chr7.2:45501205-45501224 | None:intergenic | 30.0% | |
| TCTCTATACTCATACATCTA+GGG | + | chr7.2:45502621-45502640 | None:intergenic | 30.0% | |
| TTAAAAACAAAGTAACGGTG+TGG | + | chr7.2:45499569-45499588 | None:intergenic | 30.0% | |
| TTAAAATCGGAGATTGATAC+CGG | - | chr7.2:45502400-45502419 | MS.gene45929:intron | 30.0% | |
| TTGAGATGATTTCAAAGGTA+AGG | - | chr7.2:45501604-45501623 | MS.gene45929:intron | 30.0% | |
| ! | AAGAACTTTTTACCTTCTAG+GGG | - | chr7.2:45502208-45502227 | MS.gene45929:intron | 30.0% |
| ! | AATGACAATGCAAAGTTTTG+TGG | - | chr7.2:45501992-45502011 | MS.gene45929:intron | 30.0% |
| ! | CAAGAACTTTTTACCTTCTA+GGG | - | chr7.2:45502207-45502226 | MS.gene45929:intron | 30.0% |
| ! | GAATGAATATTTTGTCCATG+GGG | - | chr7.2:45501425-45501444 | MS.gene45929:intron | 30.0% |
| ! | TATACATACCTGTGGATTTT+TGG | + | chr7.2:45499343-45499362 | None:intergenic | 30.0% |
| ! | TCAAGAACTTTTTACCTTCT+AGG | - | chr7.2:45502206-45502225 | MS.gene45929:intron | 30.0% |
| ! | TGCATTGTCATTTAGAGAAA+GGG | + | chr7.2:45501984-45502003 | None:intergenic | 30.0% |
| ! | TTGCATTGTCATTTAGAGAA+AGG | + | chr7.2:45501985-45502004 | None:intergenic | 30.0% |
| ! | TTTAGGCCAAATACATTTTG+CGG | + | chr7.2:45500525-45500544 | None:intergenic | 30.0% |
| ! | TTTTGATGCTCATAGTCATA+TGG | + | chr7.2:45500397-45500416 | None:intergenic | 30.0% |
| !! | ACCTTTGAAATCATCTCAAT+TGG | + | chr7.2:45501603-45501622 | None:intergenic | 30.0% |
| !! | CGTAACTATATTTTTAAGGG+AGG | - | chr7.2:45501299-45501318 | MS.gene45929:intron | 30.0% |
| !! | GCCTAGTCAATTTTTATTTG+AGG | + | chr7.2:45499902-45499921 | None:intergenic | 30.0% |
| AAGATAAGGTGATAGCTCAA+TGG | + | chr7.2:45500839-45500858 | None:intergenic | 35.0% | |
| AAGATACCTTGACAAGCTTA+TGG | - | chr7.2:45501196-45501215 | MS.gene45929:intron | 35.0% | |
| AATCGAGGAGAAATCAAAAG+AGG | - | chr7.2:45502159-45502178 | MS.gene45929:intron | 35.0% | |
| ACAATGACAAGTAGTCCTTT+AGG | - | chr7.2:45499646-45499665 | MS.gene45929:CDS | 35.0% | |
| CTTGCCATATGAGCATAAAA+AGG | - | chr7.2:45500163-45500182 | MS.gene45929:intron | 35.0% | |
| GAAATCAAAAGAGGAAGACA+TGG | - | chr7.2:45502168-45502187 | MS.gene45929:intron | 35.0% | |
| GCAAAATGTATTTGGCCTAA+AGG | - | chr7.2:45500524-45500543 | MS.gene45929:intron | 35.0% | |
| GTCTCTATACTCATACATCT+AGG | + | chr7.2:45502622-45502641 | None:intergenic | 35.0% | |
| TATAGCTTTCAAACCTTGTG+AGG | - | chr7.2:45499251-45499270 | MS.gene45929:CDS | 35.0% | |
| TCAAGCTGAAGTTCGTAAAT+GGG | - | chr7.2:45502273-45502292 | MS.gene45929:intron | 35.0% | |
| TCACCATTAAATCTCTAGCA+TGG | + | chr7.2:45502108-45502127 | None:intergenic | 35.0% | |
| TCTATCATGTTCTGCACTAT+CGG | - | chr7.2:45501928-45501947 | MS.gene45929:intron | 35.0% | |
| TGAGTTCCTTCTTTGATCTT+TGG | + | chr7.2:45501900-45501919 | None:intergenic | 35.0% | |
| TTCAAGCTGAAGTTCGTAAA+TGG | - | chr7.2:45502272-45502291 | MS.gene45929:intron | 35.0% | |
| TTTCTCTCAGGCATCTTTAA+AGG | + | chr7.2:45500897-45500916 | None:intergenic | 35.0% | |
| ! | AAAATTTTCGAAGCTCGTCA+TGG | - | chr7.2:45502537-45502556 | MS.gene45929:intron | 35.0% |
| ! | AAACTTCCGACTTGAATAAC+CGG | + | chr7.2:45502422-45502441 | None:intergenic | 35.0% |
| ! | GCATTGTCATTTAGAGAAAG+GGG | + | chr7.2:45501983-45502002 | None:intergenic | 35.0% |
| ! | TTGATACCGGTTATTCAAGT+CGG | - | chr7.2:45502413-45502432 | MS.gene45929:intron | 35.0% |
| !! | TGCTTTAAAATCATGGACAG+TGG | - | chr7.2:45502459-45502478 | MS.gene45929:intron | 35.0% |
| !! | TTCTAGTTCCAAAAATCCAC+AGG | - | chr7.2:45499332-45499351 | MS.gene45929:CDS | 35.0% |
| !! | TTCTAGTTCTAAACATCCAC+AGG | - | chr7.2:45499391-45499410 | MS.gene45929:CDS | 35.0% |
| AGAGAGAAAAAGGAAGAGAG+AGG | + | chr7.2:45499776-45499795 | None:intergenic | 40.0% | |
| ATCGGCTGTGAAACATTCAT+CGG | + | chr7.2:45500776-45500795 | None:intergenic | 40.0% | |
| CACTACAAGTTGCAGAAGAA+GGG | + | chr7.2:45499940-45499959 | None:intergenic | 40.0% | |
| CAGAAGAAGGGTAAAGAAGA+AGG | + | chr7.2:45499928-45499947 | None:intergenic | 40.0% | |
| CATCATGCTCGTCATAGATT+GGG | + | chr7.2:45502575-45502594 | None:intergenic | 40.0% | |
| GAGCATAGCATGTTTCATGT+TGG | + | chr7.2:45502308-45502327 | None:intergenic | 40.0% | |
| GATAGTGCAGAACATGATAG+AGG | + | chr7.2:45501929-45501948 | None:intergenic | 40.0% | |
| TCATCATGCTCGTCATAGAT+TGG | + | chr7.2:45502576-45502595 | None:intergenic | 40.0% | |
| ! | GTGGCCTTTTTATGCTCATA+TGG | + | chr7.2:45500170-45500189 | None:intergenic | 40.0% |
| !! | GAATAACTGGTCTTGGAAGA+TGG | + | chr7.2:45502237-45502256 | None:intergenic | 40.0% |
| AGCTTGAAACCTAGGTCCAA+TGG | + | chr7.2:45502260-45502279 | None:intergenic | 45.0% | |
| ATAGAGACCAGATCTCCCTT+AGG | - | chr7.2:45502634-45502653 | MS.gene45929:CDS | 45.0% | |
| ATGCTCGTCATAGATTGGGA+TGG | + | chr7.2:45502571-45502590 | None:intergenic | 45.0% | |
| CAGTTATTCCCATTGGACCT+AGG | - | chr7.2:45502248-45502267 | MS.gene45929:intron | 45.0% | |
| CCAAGACCAGTTATTCCCAT+TGG | - | chr7.2:45502241-45502260 | MS.gene45929:intron | 45.0% | |
| CGAACTTCAGCTTGAAACCT+AGG | + | chr7.2:45502268-45502287 | None:intergenic | 45.0% | |
| CTAGGTCCAATGGGAATAAC+TGG | + | chr7.2:45502250-45502269 | None:intergenic | 45.0% | |
| GCACTACAAGTTGCAGAAGA+AGG | + | chr7.2:45499941-45499960 | None:intergenic | 45.0% | |
| GCTGAAGTTCGTAAATGGGA+TGG | - | chr7.2:45502277-45502296 | MS.gene45929:intron | 45.0% | |
| GCTTGAAACCTAGGTCCAAT+GGG | + | chr7.2:45502259-45502278 | None:intergenic | 45.0% | |
| TCACGATCAACTGCACCTAA+GGG | + | chr7.2:45502652-45502671 | None:intergenic | 45.0% | |
| TCATGTTCTGCACTATCGGA+TGG | - | chr7.2:45501932-45501951 | MS.gene45929:intron | 45.0% | |
| TGTGATGACTTCTCCTCACA+AGG | + | chr7.2:45499267-45499286 | None:intergenic | 45.0% | |
| TTCACGATCAACTGCACCTA+AGG | + | chr7.2:45502653-45502672 | None:intergenic | 45.0% | |
| ! | CCAATGGGAATAACTGGTCT+TGG | + | chr7.2:45502244-45502263 | None:intergenic | 45.0% |
| ! | CTCTCAGGCATCTTTAAAGG+AGG | + | chr7.2:45500894-45500913 | None:intergenic | 45.0% |
| ! | TCCATGGGGTGCAAATTTTG+CGG | - | chr7.2:45501439-45501458 | MS.gene45929:intron | 45.0% |
| ! | TGGTATCGAGACATCAATCG+AGG | - | chr7.2:45502144-45502163 | MS.gene45929:intron | 45.0% |
| !! | TGATAAAAAAATAATAATTA+AGG | + | chr7.2:45499520-45499539 | None:intergenic | 5.0% |
| AACTGCACCTAAGGGAGATC+TGG | + | chr7.2:45502644-45502663 | None:intergenic | 50.0% | |
| ACCGCAAAATTTGCACCCCA+TGG | + | chr7.2:45501443-45501462 | None:intergenic | 50.0% | |
| GCACTATCGGATGGAACACA+AGG | - | chr7.2:45501941-45501960 | MS.gene45929:intron | 50.0% | |
| GGAAGATGGTTACCCCTAGA+AGG | + | chr7.2:45502223-45502242 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 45499234 | 45502687 | 45499234 | ID=MS.gene45929 |
| chr7.2 | mRNA | 45499234 | 45502687 | 45499234 | ID=MS.gene45929.t1;Parent=MS.gene45929 |
| chr7.2 | exon | 45502568 | 45502687 | 45502568 | ID=MS.gene45929.t1.exon1;Parent=MS.gene45929.t1 |
| chr7.2 | CDS | 45502568 | 45502687 | 45502568 | ID=cds.MS.gene45929.t1;Parent=MS.gene45929.t1 |
| chr7.2 | exon | 45499234 | 45500112 | 45499234 | ID=MS.gene45929.t1.exon2;Parent=MS.gene45929.t1 |
| chr7.2 | CDS | 45499234 | 45500112 | 45499234 | ID=cds.MS.gene45929.t1;Parent=MS.gene45929.t1 |
| Gene Sequence |
| Protein sequence |
