Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46053.t1 | XP_003623196.1 | 89.3 | 224 | 12 | 1 | 1 | 212 | 1 | 224 | 8.60E-107 | 396.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46053.t1 | P32110 | 67.6 | 225 | 60 | 2 | 1 | 212 | 1 | 225 | 3.4e-80 | 299.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46053.t1 | G7L6H0 | 89.3 | 224 | 12 | 1 | 1 | 212 | 1 | 224 | 6.2e-107 | 396.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053963 | MS.gene46053 | 0.820041 | 8.46E-53 | -1.69E-46 |
| MS.gene055147 | MS.gene46053 | 0.856498 | 3.09E-62 | -1.69E-46 |
| MS.gene055148 | MS.gene46053 | 0.855808 | 4.92E-62 | -1.69E-46 |
| MS.gene055149 | MS.gene46053 | 0.853543 | 2.23E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46053.t1 | MTR_7g065600 | 89.286 | 224 | 12 | 1 | 1 | 212 | 1 | 224 | 1.20e-145 | 404 |
| MS.gene46053.t1 | MTR_7g065590 | 75.000 | 224 | 44 | 1 | 1 | 212 | 1 | 224 | 5.89e-123 | 347 |
| MS.gene46053.t1 | MTR_7g065290 | 74.107 | 224 | 46 | 1 | 1 | 212 | 1 | 224 | 1.38e-120 | 341 |
| MS.gene46053.t1 | MTR_7g065230 | 72.321 | 224 | 45 | 2 | 1 | 212 | 1 | 219 | 1.04e-113 | 323 |
| MS.gene46053.t1 | MTR_7g065265 | 70.536 | 224 | 54 | 1 | 1 | 212 | 1 | 224 | 1.30e-113 | 323 |
| MS.gene46053.t1 | MTR_7g065270 | 69.643 | 224 | 56 | 1 | 1 | 212 | 1 | 224 | 1.82e-112 | 321 |
| MS.gene46053.t1 | MTR_7g065260 | 75.000 | 212 | 51 | 1 | 1 | 210 | 8 | 219 | 3.65e-106 | 305 |
| MS.gene46053.t1 | MTR_7g065720 | 65.778 | 225 | 64 | 2 | 1 | 212 | 1 | 225 | 8.01e-105 | 301 |
| MS.gene46053.t1 | MTR_7g065660 | 64.126 | 223 | 68 | 1 | 1 | 211 | 1 | 223 | 3.74e-103 | 297 |
| MS.gene46053.t1 | MTR_7g065740 | 62.054 | 224 | 72 | 2 | 1 | 211 | 1 | 224 | 4.94e-101 | 292 |
| MS.gene46053.t1 | MTR_7g065630 | 64.574 | 223 | 63 | 2 | 1 | 211 | 19 | 237 | 1.11e-99 | 289 |
| MS.gene46053.t1 | MTR_7g065750 | 62.054 | 224 | 72 | 2 | 1 | 211 | 1 | 224 | 1.22e-97 | 283 |
| MS.gene46053.t1 | MTR_4g019790 | 62.687 | 201 | 75 | 0 | 1 | 201 | 1 | 201 | 5.26e-93 | 271 |
| MS.gene46053.t1 | MTR_7g065710 | 66.495 | 194 | 61 | 1 | 8 | 201 | 5 | 194 | 6.08e-92 | 269 |
| MS.gene46053.t1 | MTR_7g065640 | 58.744 | 223 | 62 | 2 | 1 | 211 | 1 | 205 | 3.92e-90 | 263 |
| MS.gene46053.t1 | MTR_4g019780 | 62.000 | 200 | 74 | 2 | 3 | 201 | 4 | 202 | 1.49e-86 | 255 |
| MS.gene46053.t1 | MTR_7g065680 | 67.662 | 201 | 61 | 1 | 1 | 201 | 1 | 197 | 1.83e-85 | 252 |
| MS.gene46053.t1 | MTR_7g065700 | 66.169 | 201 | 64 | 1 | 1 | 201 | 1 | 197 | 4.55e-84 | 249 |
| MS.gene46053.t1 | MTR_6g080440 | 49.231 | 195 | 97 | 2 | 8 | 201 | 4 | 197 | 3.29e-61 | 191 |
| MS.gene46053.t1 | MTR_3g099757 | 51.515 | 198 | 94 | 2 | 5 | 201 | 3 | 199 | 1.10e-60 | 189 |
| MS.gene46053.t1 | MTR_1g090150 | 44.712 | 208 | 110 | 3 | 5 | 209 | 1 | 206 | 3.81e-58 | 183 |
| MS.gene46053.t1 | MTR_1g115195 | 47.716 | 197 | 100 | 2 | 7 | 200 | 3 | 199 | 7.18e-57 | 179 |
| MS.gene46053.t1 | MTR_8g087425 | 47.236 | 199 | 103 | 2 | 4 | 201 | 2 | 199 | 7.63e-55 | 174 |
| MS.gene46053.t1 | MTR_8g087410 | 46.535 | 202 | 105 | 3 | 1 | 201 | 1 | 200 | 1.13e-54 | 174 |
| MS.gene46053.t1 | MTR_5g037380 | 45.192 | 208 | 104 | 4 | 1 | 200 | 1 | 206 | 4.28e-52 | 167 |
| MS.gene46053.t1 | MTR_1g090070 | 43.564 | 202 | 105 | 4 | 8 | 203 | 10 | 208 | 4.89e-51 | 165 |
| MS.gene46053.t1 | MTR_5g040430 | 40.385 | 208 | 116 | 3 | 1 | 201 | 1 | 207 | 4.94e-50 | 162 |
| MS.gene46053.t1 | MTR_1g090100 | 44.670 | 197 | 103 | 4 | 8 | 200 | 3 | 197 | 8.70e-50 | 161 |
| MS.gene46053.t1 | MTR_1g090060 | 43.434 | 198 | 106 | 4 | 8 | 201 | 4 | 199 | 9.02e-49 | 159 |
| MS.gene46053.t1 | MTR_8g061950 | 44.118 | 204 | 106 | 4 | 5 | 200 | 3 | 206 | 9.76e-49 | 159 |
| MS.gene46053.t1 | MTR_1g090090 | 41.500 | 200 | 111 | 4 | 8 | 203 | 4 | 201 | 1.01e-46 | 154 |
| MS.gene46053.t1 | MTR_4g059730 | 38.278 | 209 | 124 | 3 | 6 | 210 | 3 | 210 | 4.90e-46 | 152 |
| MS.gene46053.t1 | MTR_2g070200 | 42.246 | 187 | 104 | 3 | 6 | 190 | 3 | 187 | 2.51e-43 | 145 |
| MS.gene46053.t1 | MTR_2g070150 | 40.426 | 188 | 107 | 4 | 6 | 191 | 3 | 187 | 1.62e-41 | 140 |
| MS.gene46053.t1 | MTR_3g467420 | 43.316 | 187 | 101 | 4 | 7 | 191 | 9 | 192 | 2.41e-41 | 140 |
| MS.gene46053.t1 | MTR_4g124130 | 43.229 | 192 | 99 | 6 | 5 | 191 | 2 | 188 | 5.80e-40 | 136 |
| MS.gene46053.t1 | MTR_2g070180 | 39.362 | 188 | 109 | 4 | 6 | 191 | 3 | 187 | 1.16e-39 | 135 |
| MS.gene46053.t1 | MTR_2g070130 | 39.572 | 187 | 108 | 4 | 6 | 190 | 3 | 186 | 2.75e-39 | 134 |
| MS.gene46053.t1 | MTR_2g070140 | 41.040 | 173 | 97 | 4 | 21 | 191 | 2 | 171 | 1.66e-38 | 132 |
| MS.gene46053.t1 | MTR_3g467430 | 41.053 | 190 | 107 | 4 | 4 | 191 | 6 | 192 | 8.14e-38 | 131 |
| MS.gene46053.t1 | MTR_8g056940 | 42.105 | 190 | 103 | 5 | 6 | 192 | 3 | 188 | 1.58e-37 | 130 |
| MS.gene46053.t1 | MTR_2g070120 | 39.362 | 188 | 109 | 4 | 6 | 191 | 3 | 187 | 5.75e-37 | 129 |
| MS.gene46053.t1 | MTR_2g070210 | 40.000 | 190 | 107 | 5 | 6 | 191 | 3 | 189 | 6.06e-37 | 129 |
| MS.gene46053.t1 | MTR_5g076900 | 39.683 | 189 | 109 | 4 | 3 | 189 | 2 | 187 | 8.11e-37 | 128 |
| MS.gene46053.t1 | MTR_2g070070 | 39.785 | 186 | 107 | 4 | 8 | 191 | 5 | 187 | 2.76e-35 | 124 |
| MS.gene46053.t1 | MTR_2g070060 | 38.710 | 186 | 109 | 4 | 8 | 191 | 5 | 187 | 3.19e-34 | 121 |
| MS.gene46053.t1 | MTR_0186s0030 | 45.324 | 139 | 72 | 3 | 6 | 142 | 3 | 139 | 9.90e-30 | 107 |
| MS.gene46053.t1 | MTR_2g070110 | 39.130 | 184 | 106 | 4 | 8 | 189 | 5 | 184 | 2.85e-29 | 108 |
| MS.gene46053.t1 | MTR_2g072120 | 44.615 | 65 | 35 | 1 | 51 | 114 | 2 | 66 | 3.46e-15 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46053.t1 | AT3G09270 | 51.980 | 202 | 93 | 4 | 3 | 201 | 2 | 202 | 5.84e-69 | 210 |
| MS.gene46053.t1 | AT2G29420 | 50.754 | 199 | 96 | 2 | 3 | 200 | 5 | 202 | 4.06e-68 | 208 |
| MS.gene46053.t1 | AT2G29490 | 49.010 | 202 | 100 | 3 | 1 | 200 | 1 | 201 | 9.43e-59 | 184 |
| MS.gene46053.t1 | AT2G29450 | 46.766 | 201 | 105 | 2 | 3 | 201 | 2 | 202 | 4.30e-55 | 175 |
| MS.gene46053.t1 | AT2G29480 | 45.813 | 203 | 107 | 3 | 1 | 201 | 1 | 202 | 1.30e-53 | 171 |
| MS.gene46053.t1 | AT2G29460 | 46.305 | 203 | 106 | 3 | 1 | 201 | 1 | 202 | 7.40e-53 | 169 |
| MS.gene46053.t1 | AT2G29440 | 45.813 | 203 | 106 | 4 | 1 | 201 | 1 | 201 | 1.91e-52 | 168 |
| MS.gene46053.t1 | AT2G29470 | 45.098 | 204 | 108 | 4 | 1 | 201 | 1 | 203 | 2.19e-52 | 168 |
| MS.gene46053.t1 | AT1G10370 | 45.411 | 207 | 104 | 4 | 1 | 200 | 1 | 205 | 2.10e-51 | 166 |
| MS.gene46053.t1 | AT1G59700 | 46.860 | 207 | 102 | 4 | 5 | 203 | 4 | 210 | 7.52e-49 | 159 |
| MS.gene46053.t1 | AT1G69930 | 41.463 | 205 | 114 | 3 | 2 | 200 | 7 | 211 | 1.85e-48 | 159 |
| MS.gene46053.t1 | AT1G10360 | 41.584 | 202 | 111 | 3 | 6 | 200 | 4 | 205 | 1.06e-47 | 156 |
| MS.gene46053.t1 | AT1G59670 | 44.390 | 205 | 106 | 4 | 5 | 201 | 4 | 208 | 4.42e-47 | 155 |
| MS.gene46053.t1 | AT1G27130 | 42.584 | 209 | 109 | 6 | 1 | 200 | 1 | 207 | 7.39e-46 | 152 |
| MS.gene46053.t1 | AT1G78320 | 42.857 | 189 | 103 | 4 | 5 | 191 | 2 | 187 | 6.62e-43 | 144 |
| MS.gene46053.t1 | AT1G27140 | 40.670 | 209 | 114 | 5 | 1 | 200 | 1 | 208 | 8.72e-43 | 144 |
| MS.gene46053.t1 | AT1G78380 | 44.022 | 184 | 98 | 4 | 8 | 189 | 5 | 185 | 1.01e-42 | 143 |
| MS.gene46053.t1 | AT5G62480 | 39.352 | 216 | 119 | 4 | 5 | 209 | 6 | 220 | 1.77e-42 | 143 |
| MS.gene46053.t1 | AT1G78340 | 45.402 | 174 | 92 | 3 | 6 | 177 | 3 | 175 | 1.84e-42 | 142 |
| MS.gene46053.t1 | AT1G69920 | 40.094 | 212 | 113 | 5 | 1 | 200 | 26 | 235 | 1.45e-41 | 141 |
| MS.gene46053.t1 | AT1G17170 | 43.085 | 188 | 101 | 5 | 6 | 191 | 3 | 186 | 7.33e-41 | 139 |
| MS.gene46053.t1 | AT1G78370 | 42.391 | 184 | 101 | 4 | 10 | 191 | 7 | 187 | 3.45e-40 | 137 |
| MS.gene46053.t1 | AT1G74590 | 35.749 | 207 | 126 | 3 | 1 | 201 | 1 | 206 | 2.75e-39 | 135 |
| MS.gene46053.t1 | AT1G53680 | 40.206 | 194 | 111 | 4 | 1 | 191 | 1 | 192 | 4.56e-39 | 134 |
| MS.gene46053.t1 | AT1G17190 | 40.933 | 193 | 107 | 5 | 1 | 191 | 1 | 188 | 1.23e-37 | 130 |
| MS.gene46053.t1 | AT1G17180 | 39.894 | 188 | 108 | 4 | 6 | 191 | 3 | 187 | 4.27e-37 | 129 |
| MS.gene46053.t1 | AT1G78360 | 43.931 | 173 | 93 | 4 | 8 | 177 | 5 | 176 | 7.84e-37 | 128 |
| MS.gene46053.t1 | AT3G43800 | 36.139 | 202 | 120 | 6 | 4 | 199 | 2 | 200 | 1.40e-34 | 122 |
| MS.gene46053.t1 | AT1G78320 | 35.106 | 188 | 92 | 4 | 5 | 191 | 2 | 160 | 4.62e-26 | 100 |
| MS.gene46053.t1 | AT5G62480 | 31.163 | 215 | 112 | 4 | 5 | 209 | 6 | 194 | 1.19e-24 | 96.7 |
| MS.gene46053.t1 | AT5G62480 | 31.163 | 215 | 111 | 4 | 5 | 209 | 6 | 193 | 2.58e-24 | 95.9 |
| MS.gene46053.t1 | AT2G02380 | 31.429 | 210 | 123 | 6 | 5 | 201 | 9 | 210 | 5.16e-19 | 82.0 |
| MS.gene46053.t1 | AT2G02390 | 29.384 | 211 | 130 | 5 | 3 | 201 | 4 | 207 | 1.08e-17 | 78.6 |
| MS.gene46053.t1 | AT2G02390 | 30.978 | 184 | 108 | 5 | 3 | 174 | 4 | 180 | 1.56e-15 | 72.0 |
| MS.gene46053.t1 | AT2G02390 | 28.440 | 218 | 130 | 6 | 3 | 201 | 4 | 214 | 3.10e-15 | 72.0 |
| MS.gene46053.t1 | AT5G02780 | 32.919 | 161 | 92 | 6 | 7 | 160 | 30 | 181 | 3.47e-11 | 61.2 |
| MS.gene46053.t1 | AT5G02780 | 32.919 | 161 | 92 | 6 | 7 | 160 | 30 | 181 | 3.47e-11 | 61.2 |
Find 43 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAGCCTTGGCTCGTTTC+TGG | 0.120947 | 7.2:+42881334 | MS.gene46053:CDS |
| CAGGAAAATGTTAAGCTCTT+TGG | 0.212682 | 7.2:+42881069 | MS.gene46053:CDS |
| TAAGGATCAGAAGGCAATAT+TGG | 0.299422 | 7.2:-42881309 | None:intergenic |
| ACAGGAACCTTCTTGTAAAC+AGG | 0.304362 | 7.2:-42881210 | None:intergenic |
| GAGCTCAAAGGAAAATTCTT+TGG | 0.320303 | 7.2:+42882506 | MS.gene46053:CDS |
| TTCTTTGGTGGAGAGGAGAT+TGG | 0.373411 | 7.2:+42882521 | MS.gene46053:CDS |
| TTGACTCCATTTGTAAAGCT+TGG | 0.384299 | 7.2:-42882636 | None:intergenic |
| CACCAACCATCCAGTTGTTA+AGG | 0.388600 | 7.2:+42882664 | MS.gene46053:CDS |
| TGACTCCATTTGTAAAGCTT+GGG | 0.390868 | 7.2:-42882635 | None:intergenic |
| TGTTAAGCTCTTTGGAATGA+TGG | 0.400715 | 7.2:+42881077 | MS.gene46053:CDS |
| TGCTAAGATGGCATCAAATC+AGG | 0.416653 | 7.2:+42881050 | None:intergenic |
| CGAGCTTTATCCTTAACAAC+TGG | 0.421334 | 7.2:-42882674 | None:intergenic |
| ATCACAAGGGATTCTGATAT+AGG | 0.433145 | 7.2:-42881252 | None:intergenic |
| GACCAAGTTCATAGATGATA+AGG | 0.434027 | 7.2:+42881356 | MS.gene46053:CDS |
| ATACCAATATCAGTTAGAAA+AGG | 0.450862 | 7.2:+42881152 | MS.gene46053:CDS |
| GTTTGTTGCTTCTTGTACGA+TGG | 0.459262 | 7.2:-42882585 | None:intergenic |
| GGAGATTGCTCTAACATTGA+AGG | 0.460355 | 7.2:+42881122 | MS.gene46053:CDS |
| AATTTCCCAAGCTTTACAAA+TGG | 0.474830 | 7.2:+42882630 | MS.gene46053:CDS |
| TACCAATATCAGTTAGAAAA+GGG | 0.478703 | 7.2:+42881153 | MS.gene46053:CDS |
| TACCTTATCATCTATGAACT+TGG | 0.479710 | 7.2:-42881358 | None:intergenic |
| ATCCTTAACAACTGGATGGT+TGG | 0.486493 | 7.2:-42882666 | None:intergenic |
| TTTGTTGCTTCTTGTACGAT+GGG | 0.494757 | 7.2:-42882584 | None:intergenic |
| ATCTCCACCCTACTCACAAA+TGG | 0.497901 | 7.2:-42881105 | None:intergenic |
| CTCAAAGGAAAATTCTTTGG+TGG | 0.514503 | 7.2:+42882509 | MS.gene46053:CDS |
| TTATCATTATGAACTAATAC+AGG | 0.517988 | 7.2:-42881228 | None:intergenic |
| GGCAAGTCCATTTGTGAGTA+GGG | 0.523330 | 7.2:+42881098 | MS.gene46053:CDS |
| AGGAAAATTCTTTGGTGGAG+AGG | 0.523741 | 7.2:+42882514 | MS.gene46053:CDS |
| AGAACGTGAGAAAGCTATTG+AGG | 0.524222 | 7.2:+42882451 | MS.gene46053:CDS |
| CTTTATCCTTAACAACTGGA+TGG | 0.536738 | 7.2:-42882670 | None:intergenic |
| TGATCCTTACAAAAGAGCCT+TGG | 0.548089 | 7.2:+42881323 | MS.gene46053:CDS |
| TTGAGTATGTCGATGAGACC+TGG | 0.549849 | 7.2:+42881277 | MS.gene46053:CDS |
| CAGGAACCTTCTTGTAAACA+GGG | 0.551890 | 7.2:-42881209 | None:intergenic |
| ATACAACCCTGTTTACAAGA+AGG | 0.566628 | 7.2:+42881203 | MS.gene46053:CDS |
| ATTCTTGAGAATGAGCTCAA+AGG | 0.591101 | 7.2:+42882494 | MS.gene46053:CDS |
| GAGATTGCTCTAACATTGAA+GGG | 0.597295 | 7.2:+42881123 | MS.gene46053:CDS |
| CGACATACTCAAGAATCACA+AGG | 0.607291 | 7.2:-42881266 | None:intergenic |
| TGGCAAGTCCATTTGTGAGT+AGG | 0.615908 | 7.2:+42881097 | MS.gene46053:CDS |
| ACCAGTGTTTAAGTGCTGCA+CGG | 0.628510 | 7.2:+42882402 | MS.gene46053:intron |
| TTGTTGCTTCTTGTACGATG+GGG | 0.658880 | 7.2:-42882583 | None:intergenic |
| CAATATCAGTTAGAAAAGGG+AGG | 0.666431 | 7.2:+42881156 | MS.gene46053:CDS |
| CTTGGTCCAGAAACGAGCCA+AGG | 0.682377 | 7.2:-42881340 | None:intergenic |
| AAGTCCATTTGTGAGTAGGG+TGG | 0.696953 | 7.2:+42881101 | MS.gene46053:CDS |
| GACATACTCAAGAATCACAA+GGG | 0.702786 | 7.2:-42881265 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGTTTTCATTTTTAAATTA+CGG | + | chr7.2:42881779-42881798 | MS.gene46053:intron | 10.0% |
| !!! | TTGATTTCTTTTTAAAATTA+CGG | + | chr7.2:42881873-42881892 | MS.gene46053:intron | 10.0% |
| !! | AATAAATATGATATTTGAAG+TGG | - | chr7.2:42882105-42882124 | None:intergenic | 15.0% |
| !! | AATATTTAACAAGAATAATC+TGG | + | chr7.2:42882268-42882287 | MS.gene46053:intron | 15.0% |
| !! | ATGACTATTATATATGTTTG+TGG | + | chr7.2:42882143-42882162 | MS.gene46053:intron | 20.0% |
| !! | TTATCATTATGAACTAATAC+AGG | - | chr7.2:42881231-42881250 | None:intergenic | 20.0% |
| !!! | TTTTAAAAAGAAATCAAGTG+TGG | - | chr7.2:42881870-42881889 | None:intergenic | 20.0% |
| ! | ACACTGTATATTATATGTAG+GGG | - | chr7.2:42881505-42881524 | None:intergenic | 25.0% |
| ! | AGAGAAAAACATAATACATG+TGG | + | chr7.2:42881666-42881685 | MS.gene46053:intron | 25.0% |
| ! | ATACCAATATCAGTTAGAAA+AGG | + | chr7.2:42881152-42881171 | MS.gene46053:CDS | 25.0% |
| ! | GACACTGTATATTATATGTA+GGG | - | chr7.2:42881506-42881525 | None:intergenic | 25.0% |
| ! | TAAAATATTTCACAAGCATG+TGG | + | chr7.2:42881591-42881610 | MS.gene46053:intron | 25.0% |
| ! | TACCAATATCAGTTAGAAAA+GGG | + | chr7.2:42881153-42881172 | MS.gene46053:CDS | 25.0% |
| !! | GTATTATGTTTTTCTCTATG+CGG | - | chr7.2:42881663-42881682 | None:intergenic | 25.0% |
| !!! | ACACTGGTTTCAAAAAATTA+AGG | - | chr7.2:42882390-42882409 | None:intergenic | 25.0% |
| AAATACCACAAACTTCACTA+AGG | + | chr7.2:42881711-42881730 | MS.gene46053:intron | 30.0% | |
| AATACCACAAACTTCACTAA+GGG | + | chr7.2:42881712-42881731 | MS.gene46053:intron | 30.0% | |
| AATTTCCCAAGCTTTACAAA+TGG | + | chr7.2:42882630-42882649 | MS.gene46053:CDS | 30.0% | |
| GGACACTGTATATTATATGT+AGG | - | chr7.2:42881507-42881526 | None:intergenic | 30.0% | |
| TACCTTATCATCTATGAACT+TGG | - | chr7.2:42881361-42881380 | None:intergenic | 30.0% | |
| TGTATATTATATGTAGGGGT+CGG | - | chr7.2:42881501-42881520 | None:intergenic | 30.0% | |
| ! | TGAGATATAATGACTTGTGA+CGG | - | chr7.2:42882225-42882244 | None:intergenic | 30.0% |
| !! | ACCTTTAAAGTGTATAAGTG+GGG | + | chr7.2:42881458-42881477 | MS.gene46053:intron | 30.0% |
| !! | CAATATTGGATTTTGTTTCC+AGG | - | chr7.2:42881298-42881317 | None:intergenic | 30.0% |
| !! | CACCTTTAAAGTGTATAAGT+GGG | + | chr7.2:42881457-42881476 | MS.gene46053:intron | 30.0% |
| !! | TCACCTTTAAAGTGTATAAG+TGG | + | chr7.2:42881456-42881475 | MS.gene46053:intron | 30.0% |
| ACCCCACTTATACACTTTAA+AGG | - | chr7.2:42881462-42881481 | None:intergenic | 35.0% | |
| ATACAACCCTGTTTACAAGA+AGG | + | chr7.2:42881203-42881222 | MS.gene46053:CDS | 35.0% | |
| ATACGCTAGAGAGACATTTA+GGG | - | chr7.2:42882068-42882087 | None:intergenic | 35.0% | |
| ATATTTCACAAGCATGTGGA+TGG | + | chr7.2:42881595-42881614 | MS.gene46053:intron | 35.0% | |
| ATCACAAGGGATTCTGATAT+AGG | - | chr7.2:42881255-42881274 | None:intergenic | 35.0% | |
| ATTCTTGAGAATGAGCTCAA+AGG | + | chr7.2:42882494-42882513 | MS.gene46053:CDS | 35.0% | |
| CAATATCAGTTAGAAAAGGG+AGG | + | chr7.2:42881156-42881175 | MS.gene46053:CDS | 35.0% | |
| CAGGAAAATGTTAAGCTCTT+TGG | + | chr7.2:42881069-42881088 | MS.gene46053:CDS | 35.0% | |
| CTCAAAGGAAAATTCTTTGG+TGG | + | chr7.2:42882509-42882528 | MS.gene46053:CDS | 35.0% | |
| CTCATAGTCATTCATGTTCT+TGG | + | chr7.2:42882169-42882188 | MS.gene46053:intron | 35.0% | |
| CTTTATCCTTAACAACTGGA+TGG | - | chr7.2:42882673-42882692 | None:intergenic | 35.0% | |
| GAAATACGTTCATGTGATCT+CGG | - | chr7.2:42881542-42881561 | None:intergenic | 35.0% | |
| GACATACTCAAGAATCACAA+GGG | - | chr7.2:42881268-42881287 | None:intergenic | 35.0% | |
| GACCAAGTTCATAGATGATA+AGG | + | chr7.2:42881356-42881375 | MS.gene46053:CDS | 35.0% | |
| GAGATTGCTCTAACATTGAA+GGG | + | chr7.2:42881123-42881142 | MS.gene46053:CDS | 35.0% | |
| GAGCTCAAAGGAAAATTCTT+TGG | + | chr7.2:42882506-42882525 | MS.gene46053:CDS | 35.0% | |
| TAAGGATCAGAAGGCAATAT+TGG | - | chr7.2:42881312-42881331 | None:intergenic | 35.0% | |
| TATACGCTAGAGAGACATTT+AGG | - | chr7.2:42882069-42882088 | None:intergenic | 35.0% | |
| TGACTCCATTTGTAAAGCTT+GGG | - | chr7.2:42882638-42882657 | None:intergenic | 35.0% | |
| TTGACTCCATTTGTAAAGCT+TGG | - | chr7.2:42882639-42882658 | None:intergenic | 35.0% | |
| TTTGTTTGGATGGAGGATTT+AGG | + | chr7.2:42881735-42881754 | MS.gene46053:intron | 35.0% | |
| ! | AACTTCACTAAGGGTTTGTT+TGG | + | chr7.2:42881721-42881740 | MS.gene46053:intron | 35.0% |
| ! | ATTTGAAGTGGTTCTCAATG+TGG | - | chr7.2:42882093-42882112 | None:intergenic | 35.0% |
| ! | CTCCCTTTTCTAACTGATAT+TGG | - | chr7.2:42881158-42881177 | None:intergenic | 35.0% |
| ! | TCTTTATTTGTGCACATGTG+TGG | + | chr7.2:42881567-42881586 | MS.gene46053:intron | 35.0% |
| ! | TTTGTTGCTTCTTGTACGAT+GGG | - | chr7.2:42882587-42882606 | None:intergenic | 35.0% |
| !! | TATAATGACTTGTGACGGAT+TGG | - | chr7.2:42882220-42882239 | None:intergenic | 35.0% |
| !! | TGTTAAGCTCTTTGGAATGA+TGG | + | chr7.2:42881077-42881096 | MS.gene46053:CDS | 35.0% |
| ACAGGAACCTTCTTGTAAAC+AGG | - | chr7.2:42881213-42881232 | None:intergenic | 40.0% | |
| AGAACGTGAGAAAGCTATTG+AGG | + | chr7.2:42882451-42882470 | MS.gene46053:CDS | 40.0% | |
| AGGAAAATTCTTTGGTGGAG+AGG | + | chr7.2:42882514-42882533 | MS.gene46053:CDS | 40.0% | |
| ATCCTTAACAACTGGATGGT+TGG | - | chr7.2:42882669-42882688 | None:intergenic | 40.0% | |
| ATTGGATTGAGGGTTTAGGA+GGG | - | chr7.2:42882041-42882060 | None:intergenic | 40.0% | |
| CAAACCCTTAGTGAAGTTTG+TGG | - | chr7.2:42881719-42881738 | None:intergenic | 40.0% | |
| CAGGAACCTTCTTGTAAACA+GGG | - | chr7.2:42881212-42881231 | None:intergenic | 40.0% | |
| CGACATACTCAAGAATCACA+AGG | - | chr7.2:42881269-42881288 | None:intergenic | 40.0% | |
| GGAGATTGCTCTAACATTGA+AGG | + | chr7.2:42881122-42881141 | MS.gene46053:CDS | 40.0% | |
| TGATCCTTACAAAAGAGCCT+TGG | + | chr7.2:42881323-42881342 | MS.gene46053:CDS | 40.0% | |
| TGATCTCGGTTCAGTTAGTA+GGG | - | chr7.2:42881528-42881547 | None:intergenic | 40.0% | |
| TGTGATTGGATTGAGGGTTT+AGG | - | chr7.2:42882045-42882064 | None:intergenic | 40.0% | |
| TTAGGGTGTGATTGGATTGA+GGG | - | chr7.2:42882051-42882070 | None:intergenic | 40.0% | |
| TTTGGATGGAGGATTTAGGA+GGG | + | chr7.2:42881739-42881758 | MS.gene46053:intron | 40.0% | |
| ! | AGAGACATTTAGGGTGTGAT+TGG | - | chr7.2:42882059-42882078 | None:intergenic | 40.0% |
| ! | CGAGCTTTATCCTTAACAAC+TGG | - | chr7.2:42882677-42882696 | None:intergenic | 40.0% |
| ! | CTGCAGTCTTCATAGCTTTT+TGG | + | chr7.2:42882558-42882577 | MS.gene46053:CDS | 40.0% |
| ! | GCTCTTTTGTAAGGATCAGA+AGG | - | chr7.2:42881321-42881340 | None:intergenic | 40.0% |
| ! | GTTTGTTGCTTCTTGTACGA+TGG | - | chr7.2:42882588-42882607 | None:intergenic | 40.0% |
| ! | TCACTAAGGGTTTGTTTGGA+TGG | + | chr7.2:42881725-42881744 | MS.gene46053:intron | 40.0% |
| ! | TTGTTGCTTCTTGTACGATG+GGG | - | chr7.2:42882586-42882605 | None:intergenic | 40.0% |
| ! | TTTAGGGTGTGATTGGATTG+AGG | - | chr7.2:42882052-42882071 | None:intergenic | 40.0% |
| AAGTCCATTTGTGAGTAGGG+TGG | + | chr7.2:42881101-42881120 | MS.gene46053:CDS | 45.0% | |
| ATCTCCACCCTACTCACAAA+TGG | - | chr7.2:42881108-42881127 | None:intergenic | 45.0% | |
| CACCAACCATCCAGTTGTTA+AGG | + | chr7.2:42882664-42882683 | MS.gene46053:CDS | 45.0% | |
| GATTGGATTGAGGGTTTAGG+AGG | - | chr7.2:42882042-42882061 | None:intergenic | 45.0% | |
| GGCAAGTCCATTTGTGAGTA+GGG | + | chr7.2:42881098-42881117 | MS.gene46053:CDS | 45.0% | |
| GTGATCTCGGTTCAGTTAGT+AGG | - | chr7.2:42881529-42881548 | None:intergenic | 45.0% | |
| GTTTGGATGGAGGATTTAGG+AGG | + | chr7.2:42881738-42881757 | MS.gene46053:intron | 45.0% | |
| TGGCAAGTCCATTTGTGAGT+AGG | + | chr7.2:42881097-42881116 | MS.gene46053:CDS | 45.0% | |
| TTCTTTGGTGGAGAGGAGAT+TGG | + | chr7.2:42882521-42882540 | MS.gene46053:CDS | 45.0% | |
| TTGAGTATGTCGATGAGACC+TGG | + | chr7.2:42881277-42881296 | MS.gene46053:CDS | 45.0% | |
| TTGGATGGAGGATTTAGGAG+GGG | + | chr7.2:42881740-42881759 | MS.gene46053:intron | 45.0% | |
| TTGGATTGAGGGTTTAGGAG+GGG | - | chr7.2:42882040-42882059 | None:intergenic | 45.0% | |
| ! | ACCAGTGTTTAAGTGCTGCA+CGG | + | chr7.2:42882402-42882421 | MS.gene46053:intron | 45.0% |
| ! | CTAAGGGTTTGTTTGGATGG+AGG | + | chr7.2:42881728-42881747 | MS.gene46053:intron | 45.0% |
| !!! | TAGTTTTTATTTTTAAATTA+CGG | - | chr7.2:42882001-42882020 | None:intergenic | 5.0% |
| ATGGAGGATTTAGGAGGGGA+AGG | + | chr7.2:42881744-42881763 | MS.gene46053:intron | 50.0% | |
| TCCGTGCAGCACTTAAACAC+TGG | - | chr7.2:42882406-42882425 | None:intergenic | 50.0% | |
| TGGAGGATTTAGGAGGGGAA+GGG | + | chr7.2:42881745-42881764 | MS.gene46053:intron | 50.0% | |
| ! | AAAGAGCCTTGGCTCGTTTC+TGG | + | chr7.2:42881334-42881353 | MS.gene46053:CDS | 50.0% |
| ! | CGAGCCAAGGCTCTTTTGTA+AGG | - | chr7.2:42881330-42881349 | None:intergenic | 50.0% |
| AGGATTTAGGAGGGGAAGGG+AGG | + | chr7.2:42881748-42881767 | MS.gene46053:intron | 55.0% | |
| AGGGGTCGGAGTTCGAACTT+CGG | - | chr7.2:42881487-42881506 | None:intergenic | 55.0% | |
| CTTGGTCCAGAAACGAGCCA+AGG | - | chr7.2:42881343-42881362 | None:intergenic | 55.0% | |
| GATTTAGGAGGGGAAGGGAG+GGG | + | chr7.2:42881750-42881769 | MS.gene46053:intron | 55.0% | |
| GGATTTAGGAGGGGAAGGGA+GGG | + | chr7.2:42881749-42881768 | MS.gene46053:intron | 55.0% | |
| GGTTTAGGAGGGGCAGAGAG+AGG | - | chr7.2:42882030-42882049 | None:intergenic | 60.0% | |
| TAGGAGGGGCAGAGAGAGGA+GGG | - | chr7.2:42882026-42882045 | None:intergenic | 60.0% | |
| TTAGGAGGGGCAGAGAGAGG+AGG | - | chr7.2:42882027-42882046 | None:intergenic | 60.0% | |
| TAGGAGGGGAAGGGAGGGGA+GGG | + | chr7.2:42881754-42881773 | MS.gene46053:intron | 65.0% | |
| TTAGGAGGGGAAGGGAGGGG+AGG | + | chr7.2:42881753-42881772 | MS.gene46053:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 42881057 | 42882724 | 42881057 | ID=MS.gene46053 |
| chr7.2 | mRNA | 42881057 | 42882724 | 42881057 | ID=MS.gene46053.t1;Parent=MS.gene46053 |
| chr7.2 | exon | 42881057 | 42881377 | 42881057 | ID=MS.gene46053.t1.exon1;Parent=MS.gene46053.t1 |
| chr7.2 | CDS | 42881057 | 42881377 | 42881057 | ID=cds.MS.gene46053.t1;Parent=MS.gene46053.t1 |
| chr7.2 | exon | 42882407 | 42882724 | 42882407 | ID=MS.gene46053.t1.exon2;Parent=MS.gene46053.t1 |
| chr7.2 | CDS | 42882407 | 42882724 | 42882407 | ID=cds.MS.gene46053.t1;Parent=MS.gene46053.t1 |
| Gene Sequence |
| Protein sequence |
