Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055148.t1 | XP_003623196.1 | 94.6 | 224 | 12 | 0 | 1 | 224 | 1 | 224 | 1.60E-116 | 428.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055148.t1 | P32110 | 71.1 | 225 | 64 | 1 | 1 | 224 | 1 | 225 | 1.1e-87 | 324.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055148.t1 | G7L6H0 | 94.6 | 224 | 12 | 0 | 1 | 224 | 1 | 224 | 1.2e-116 | 428.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051154 | MS.gene055148 | 0.80308 | 4.13E-49 | -1.69E-46 |
| MS.gene053094 | MS.gene055148 | 0.82446 | 7.98E-54 | -1.69E-46 |
| MS.gene053963 | MS.gene055148 | 0.821044 | 4.98E-53 | -1.69E-46 |
| MS.gene054892 | MS.gene055148 | 0.82902 | 6.50E-55 | -1.69E-46 |
| MS.gene054893 | MS.gene055148 | 0.828564 | 8.38E-55 | -1.69E-46 |
| MS.gene055147 | MS.gene055148 | 0.983083 | 8.75E-157 | -1.69E-46 |
| MS.gene055148 | MS.gene055149 | 0.869184 | 3.74E-66 | -1.69E-46 |
| MS.gene055148 | MS.gene055150 | 0.821428 | 4.06E-53 | -1.69E-46 |
| MS.gene055148 | MS.gene055226 | 0.808455 | 3.07E-50 | -1.69E-46 |
| MS.gene055148 | MS.gene05808 | 0.814969 | 1.18E-51 | -1.69E-46 |
| MS.gene055148 | MS.gene062327 | 0.837941 | 3.86E-57 | -1.69E-46 |
| MS.gene055148 | MS.gene063247 | 0.805247 | 1.46E-49 | -1.69E-46 |
| MS.gene055148 | MS.gene065460 | 0.818522 | 1.88E-52 | -1.69E-46 |
| MS.gene055148 | MS.gene065886 | 0.850264 | 1.90E-60 | -1.69E-46 |
| MS.gene055148 | MS.gene066272 | 0.80485 | 1.77E-49 | -1.69E-46 |
| MS.gene055148 | MS.gene066513 | 0.823651 | 1.23E-53 | -1.69E-46 |
| MS.gene055148 | MS.gene072273 | 0.808012 | 3.82E-50 | -1.69E-46 |
| MS.gene055148 | MS.gene074100 | 0.810283 | 1.25E-50 | -1.69E-46 |
| MS.gene055148 | MS.gene08120 | 0.820747 | 5.83E-53 | -1.69E-46 |
| MS.gene055148 | MS.gene20481 | 0.808919 | 2.44E-50 | -1.69E-46 |
| MS.gene055148 | MS.gene20608 | 0.80263 | 5.12E-49 | -1.69E-46 |
| MS.gene055148 | MS.gene27204 | 0.811121 | 8.20E-51 | -1.69E-46 |
| MS.gene055148 | MS.gene29036 | 0.80738 | 5.20E-50 | -1.69E-46 |
| MS.gene055148 | MS.gene29096 | 0.801581 | 8.42E-49 | -1.69E-46 |
| MS.gene055148 | MS.gene29969 | 0.833561 | 4.97E-56 | -1.69E-46 |
| MS.gene055148 | MS.gene30878 | 0.831173 | 1.94E-55 | -1.69E-46 |
| MS.gene055148 | MS.gene32409 | 0.806061 | 9.88E-50 | -1.69E-46 |
| MS.gene055148 | MS.gene32411 | 0.820801 | 5.66E-53 | -1.69E-46 |
| MS.gene055148 | MS.gene32801 | 0.820359 | 7.15E-53 | -1.69E-46 |
| MS.gene055148 | MS.gene34340 | 0.83277 | 7.82E-56 | -1.69E-46 |
| MS.gene055148 | MS.gene34444 | 0.809283 | 2.04E-50 | -1.69E-46 |
| MS.gene055148 | MS.gene36977 | 0.830206 | 3.35E-55 | -1.69E-46 |
| MS.gene055148 | MS.gene37412 | 0.845749 | 3.34E-59 | -1.69E-46 |
| MS.gene055148 | MS.gene39037 | 0.818665 | 1.74E-52 | -1.69E-46 |
| MS.gene055148 | MS.gene39295 | 0.838567 | 2.66E-57 | -1.69E-46 |
| MS.gene055148 | MS.gene43381 | 0.824665 | 7.14E-54 | -1.69E-46 |
| MS.gene055148 | MS.gene43585 | 0.817149 | 3.83E-52 | -1.69E-46 |
| MS.gene055148 | MS.gene44909 | 0.846119 | 2.65E-59 | -1.69E-46 |
| MS.gene055148 | MS.gene46053 | 0.855808 | 4.92E-62 | -1.69E-46 |
| MS.gene055148 | MS.gene46054 | 0.947765 | 3.56E-106 | -1.69E-46 |
| MS.gene055148 | MS.gene46055 | 0.814669 | 1.37E-51 | -1.69E-46 |
| MS.gene055148 | MS.gene47195 | 0.802385 | 5.75E-49 | -1.69E-46 |
| MS.gene055148 | MS.gene53855 | 0.810007 | 1.43E-50 | -1.69E-46 |
| MS.gene055148 | MS.gene54377 | 0.806448 | 8.19E-50 | -1.69E-46 |
| MS.gene055148 | MS.gene54380 | 0.807371 | 5.22E-50 | -1.69E-46 |
| MS.gene055148 | MS.gene57028 | 0.814862 | 1.24E-51 | -1.69E-46 |
| MS.gene055148 | MS.gene57128 | 0.828453 | 8.91E-55 | -1.69E-46 |
| MS.gene055148 | MS.gene58467 | 0.812604 | 3.90E-51 | -1.69E-46 |
| MS.gene055148 | MS.gene59184 | 0.807589 | 4.69E-50 | -1.69E-46 |
| MS.gene055148 | MS.gene60313 | 0.81532 | 9.82E-52 | -1.69E-46 |
| MS.gene055148 | MS.gene61064 | 0.809511 | 1.83E-50 | -1.69E-46 |
| MS.gene055148 | MS.gene62676 | 0.834517 | 2.86E-56 | -1.69E-46 |
| MS.gene055148 | MS.gene62677 | 0.842947 | 1.89E-58 | -1.69E-46 |
| MS.gene055148 | MS.gene65244 | 0.852114 | 5.71E-61 | -1.69E-46 |
| MS.gene055148 | MS.gene68086 | 0.803639 | 3.17E-49 | -1.69E-46 |
| MS.gene055148 | MS.gene68298 | 0.80277 | 4.79E-49 | -1.69E-46 |
| MS.gene055148 | MS.gene69691 | 0.812745 | 3.63E-51 | -1.69E-46 |
| MS.gene055148 | MS.gene70154 | 0.80028 | 1.55E-48 | -1.69E-46 |
| MS.gene055148 | MS.gene70742 | 0.836397 | 9.59E-57 | -1.69E-46 |
| MS.gene055148 | MS.gene71568 | 0.800596 | 1.34E-48 | -1.69E-46 |
| MS.gene055148 | MS.gene73236 | 0.808422 | 3.12E-50 | -1.69E-46 |
| MS.gene055148 | MS.gene74530 | 0.812481 | 4.15E-51 | -1.69E-46 |
| MS.gene055148 | MS.gene78773 | 0.810234 | 1.28E-50 | -1.69E-46 |
| MS.gene055148 | MS.gene80821 | 0.802683 | 4.99E-49 | -1.69E-46 |
| MS.gene055148 | MS.gene81272 | 0.80427 | 2.34E-49 | -1.69E-46 |
| MS.gene055148 | MS.gene82269 | 0.806027 | 1.00E-49 | -1.69E-46 |
| MS.gene055148 | MS.gene83022 | 0.825605 | 4.28E-54 | -1.69E-46 |
| MS.gene055148 | MS.gene83853 | 0.809057 | 2.28E-50 | -1.69E-46 |
| MS.gene055148 | MS.gene85979 | 0.803018 | 4.26E-49 | -1.69E-46 |
| MS.gene055148 | MS.gene88351 | 0.825779 | 3.89E-54 | -1.69E-46 |
| MS.gene055148 | MS.gene89254 | 0.97189 | 7.00E-134 | -1.69E-46 |
| MS.gene055148 | MS.gene89255 | 0.875713 | 2.48E-68 | -1.69E-46 |
| MS.gene055148 | MS.gene89256 | 0.822311 | 2.53E-53 | -1.69E-46 |
| MS.gene055148 | MS.gene93602 | 0.81057 | 1.08E-50 | -1.69E-46 |
| MS.gene055148 | MS.gene94111 | 0.805895 | 1.07E-49 | -1.69E-46 |
| MS.gene055148 | MS.gene94266 | 0.81816 | 2.27E-52 | -1.69E-46 |
| MS.gene055148 | MS.gene94267 | 0.815507 | 8.92E-52 | -1.69E-46 |
| MS.gene055148 | MS.gene94268 | 0.96412 | 6.28E-123 | -1.69E-46 |
| MS.gene055148 | MS.gene95332 | 0.819311 | 1.24E-52 | -1.69E-46 |
| MS.gene055148 | MS.gene99534 | 0.813139 | 2.98E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055148.t1 | MTR_7g065600 | 94.643 | 224 | 12 | 0 | 1 | 224 | 1 | 224 | 5.23e-158 | 436 |
| MS.gene055148.t1 | MTR_7g065590 | 79.911 | 224 | 45 | 0 | 1 | 224 | 1 | 224 | 1.60e-134 | 377 |
| MS.gene055148.t1 | MTR_7g065290 | 77.232 | 224 | 51 | 0 | 1 | 224 | 1 | 224 | 3.30e-129 | 363 |
| MS.gene055148.t1 | MTR_7g065265 | 74.107 | 224 | 58 | 0 | 1 | 224 | 1 | 224 | 6.19e-123 | 348 |
| MS.gene055148.t1 | MTR_7g065230 | 75.893 | 224 | 49 | 1 | 1 | 224 | 1 | 219 | 1.41e-122 | 347 |
| MS.gene055148.t1 | MTR_7g065270 | 72.768 | 224 | 61 | 0 | 1 | 224 | 1 | 224 | 1.22e-120 | 342 |
| MS.gene055148.t1 | MTR_7g065260 | 76.889 | 225 | 51 | 1 | 1 | 224 | 8 | 232 | 5.12e-117 | 333 |
| MS.gene055148.t1 | MTR_7g065720 | 69.333 | 225 | 68 | 1 | 1 | 224 | 1 | 225 | 9.08e-115 | 327 |
| MS.gene055148.t1 | MTR_7g065660 | 67.713 | 223 | 72 | 0 | 1 | 223 | 1 | 223 | 6.80e-113 | 322 |
| MS.gene055148.t1 | MTR_7g065740 | 62.946 | 224 | 82 | 1 | 1 | 223 | 1 | 224 | 2.64e-107 | 308 |
| MS.gene055148.t1 | MTR_7g065630 | 66.368 | 223 | 71 | 1 | 1 | 223 | 19 | 237 | 5.23e-106 | 305 |
| MS.gene055148.t1 | MTR_4g019790 | 61.435 | 223 | 86 | 0 | 1 | 223 | 1 | 223 | 2.12e-104 | 301 |
| MS.gene055148.t1 | MTR_7g065750 | 63.839 | 224 | 80 | 1 | 1 | 223 | 1 | 224 | 4.87e-104 | 300 |
| MS.gene055148.t1 | MTR_7g065640 | 61.883 | 223 | 67 | 1 | 1 | 223 | 1 | 205 | 5.36e-99 | 286 |
| MS.gene055148.t1 | MTR_7g065710 | 64.251 | 207 | 70 | 1 | 8 | 214 | 5 | 207 | 7.87e-95 | 276 |
| MS.gene055148.t1 | MTR_4g019780 | 62.150 | 214 | 79 | 2 | 3 | 215 | 4 | 216 | 1.18e-93 | 273 |
| MS.gene055148.t1 | MTR_7g065680 | 65.315 | 222 | 73 | 1 | 1 | 222 | 1 | 218 | 8.16e-92 | 269 |
| MS.gene055148.t1 | MTR_7g065700 | 63.551 | 214 | 74 | 1 | 1 | 214 | 1 | 210 | 1.30e-86 | 256 |
| MS.gene055148.t1 | MTR_1g090150 | 45.249 | 221 | 116 | 2 | 5 | 222 | 1 | 219 | 2.71e-65 | 201 |
| MS.gene055148.t1 | MTR_6g080440 | 47.826 | 207 | 106 | 2 | 8 | 213 | 4 | 209 | 2.67e-64 | 199 |
| MS.gene055148.t1 | MTR_8g087425 | 46.789 | 218 | 114 | 2 | 4 | 220 | 2 | 218 | 1.15e-63 | 197 |
| MS.gene055148.t1 | MTR_3g099757 | 48.636 | 220 | 111 | 2 | 5 | 223 | 3 | 221 | 3.10e-63 | 196 |
| MS.gene055148.t1 | MTR_5g040430 | 42.342 | 222 | 120 | 3 | 1 | 215 | 1 | 221 | 4.58e-59 | 186 |
| MS.gene055148.t1 | MTR_1g115195 | 45.070 | 213 | 114 | 2 | 7 | 216 | 3 | 215 | 1.16e-58 | 184 |
| MS.gene055148.t1 | MTR_8g087410 | 45.161 | 217 | 116 | 3 | 1 | 216 | 1 | 215 | 1.53e-58 | 184 |
| MS.gene055148.t1 | MTR_1g090070 | 42.793 | 222 | 118 | 4 | 8 | 223 | 10 | 228 | 3.95e-56 | 178 |
| MS.gene055148.t1 | MTR_1g090100 | 42.986 | 221 | 120 | 4 | 7 | 223 | 2 | 220 | 2.52e-54 | 173 |
| MS.gene055148.t1 | MTR_5g037380 | 43.182 | 220 | 115 | 3 | 1 | 212 | 1 | 218 | 3.87e-54 | 173 |
| MS.gene055148.t1 | MTR_1g090060 | 42.081 | 221 | 122 | 4 | 8 | 224 | 4 | 222 | 2.21e-53 | 171 |
| MS.gene055148.t1 | MTR_4g059730 | 39.906 | 213 | 124 | 2 | 6 | 215 | 3 | 214 | 2.08e-51 | 166 |
| MS.gene055148.t1 | MTR_8g061950 | 42.922 | 219 | 117 | 3 | 5 | 215 | 3 | 221 | 2.52e-51 | 166 |
| MS.gene055148.t1 | MTR_1g090090 | 41.627 | 209 | 116 | 4 | 8 | 212 | 4 | 210 | 6.53e-50 | 162 |
| MS.gene055148.t1 | MTR_2g070200 | 40.686 | 204 | 117 | 3 | 6 | 207 | 3 | 204 | 2.30e-45 | 150 |
| MS.gene055148.t1 | MTR_2g070150 | 38.725 | 204 | 120 | 4 | 6 | 207 | 3 | 203 | 1.04e-43 | 146 |
| MS.gene055148.t1 | MTR_3g467420 | 42.000 | 200 | 111 | 4 | 7 | 204 | 9 | 205 | 4.22e-43 | 145 |
| MS.gene055148.t1 | MTR_2g070140 | 38.144 | 194 | 115 | 4 | 21 | 212 | 2 | 192 | 2.98e-41 | 139 |
| MS.gene055148.t1 | MTR_2g070130 | 38.235 | 204 | 121 | 4 | 6 | 207 | 3 | 203 | 4.05e-41 | 139 |
| MS.gene055148.t1 | MTR_2g070180 | 37.745 | 204 | 122 | 4 | 6 | 207 | 3 | 203 | 7.25e-41 | 139 |
| MS.gene055148.t1 | MTR_4g124130 | 43.229 | 192 | 99 | 6 | 5 | 191 | 2 | 188 | 6.10e-40 | 137 |
| MS.gene055148.t1 | MTR_3g467430 | 39.901 | 203 | 117 | 4 | 4 | 204 | 6 | 205 | 1.93e-39 | 135 |
| MS.gene055148.t1 | MTR_2g070210 | 37.915 | 211 | 124 | 5 | 6 | 212 | 3 | 210 | 1.21e-38 | 133 |
| MS.gene055148.t1 | MTR_8g056940 | 41.270 | 189 | 106 | 4 | 6 | 192 | 3 | 188 | 1.35e-38 | 133 |
| MS.gene055148.t1 | MTR_2g070120 | 37.864 | 206 | 123 | 4 | 6 | 209 | 3 | 205 | 6.41e-38 | 131 |
| MS.gene055148.t1 | MTR_2g070070 | 39.196 | 199 | 116 | 4 | 8 | 204 | 5 | 200 | 2.30e-37 | 130 |
| MS.gene055148.t1 | MTR_5g076900 | 37.981 | 208 | 122 | 5 | 3 | 207 | 2 | 205 | 2.59e-37 | 130 |
| MS.gene055148.t1 | MTR_2g070060 | 37.129 | 202 | 122 | 4 | 8 | 207 | 5 | 203 | 1.17e-36 | 128 |
| MS.gene055148.t1 | MTR_2g070110 | 37.198 | 207 | 124 | 4 | 8 | 212 | 5 | 207 | 9.11e-32 | 115 |
| MS.gene055148.t1 | MTR_0186s0030 | 45.385 | 130 | 69 | 2 | 16 | 144 | 13 | 141 | 1.23e-30 | 110 |
| MS.gene055148.t1 | MTR_2g072120 | 44.615 | 65 | 35 | 1 | 51 | 114 | 2 | 66 | 3.42e-15 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055148.t1 | AT3G09270 | 50.446 | 224 | 107 | 4 | 3 | 223 | 2 | 224 | 1.84e-75 | 228 |
| MS.gene055148.t1 | AT2G29420 | 48.402 | 219 | 111 | 2 | 3 | 220 | 5 | 222 | 2.71e-72 | 219 |
| MS.gene055148.t1 | AT2G29490 | 47.847 | 209 | 106 | 3 | 1 | 207 | 1 | 208 | 3.01e-60 | 189 |
| MS.gene055148.t1 | AT2G29450 | 43.498 | 223 | 124 | 2 | 3 | 223 | 2 | 224 | 2.65e-57 | 181 |
| MS.gene055148.t1 | AT2G29460 | 43.694 | 222 | 122 | 3 | 1 | 220 | 1 | 221 | 1.05e-55 | 177 |
| MS.gene055148.t1 | AT2G29480 | 44.498 | 209 | 113 | 3 | 1 | 207 | 1 | 208 | 1.95e-54 | 174 |
| MS.gene055148.t1 | AT2G29440 | 41.778 | 225 | 127 | 4 | 1 | 223 | 1 | 223 | 3.19e-53 | 171 |
| MS.gene055148.t1 | AT2G29470 | 43.810 | 210 | 114 | 4 | 1 | 207 | 1 | 209 | 5.11e-53 | 170 |
| MS.gene055148.t1 | AT1G69930 | 38.839 | 224 | 131 | 2 | 2 | 219 | 7 | 230 | 4.75e-52 | 168 |
| MS.gene055148.t1 | AT1G10370 | 44.076 | 211 | 109 | 3 | 1 | 204 | 1 | 209 | 6.43e-52 | 167 |
| MS.gene055148.t1 | AT1G27130 | 40.000 | 225 | 126 | 4 | 1 | 217 | 1 | 224 | 6.64e-50 | 162 |
| MS.gene055148.t1 | AT1G10360 | 40.777 | 206 | 115 | 2 | 6 | 204 | 4 | 209 | 6.12e-49 | 160 |
| MS.gene055148.t1 | AT1G59700 | 43.891 | 221 | 110 | 4 | 5 | 214 | 4 | 221 | 7.58e-48 | 157 |
| MS.gene055148.t1 | AT1G59670 | 42.788 | 208 | 111 | 3 | 5 | 204 | 4 | 211 | 1.68e-47 | 156 |
| MS.gene055148.t1 | AT5G62480 | 39.367 | 221 | 123 | 4 | 5 | 215 | 6 | 225 | 7.86e-46 | 152 |
| MS.gene055148.t1 | AT1G27140 | 38.767 | 227 | 129 | 4 | 1 | 218 | 1 | 226 | 7.47e-45 | 150 |
| MS.gene055148.t1 | AT1G78380 | 41.546 | 207 | 116 | 4 | 8 | 212 | 5 | 208 | 1.40e-44 | 149 |
| MS.gene055148.t1 | AT1G78320 | 40.865 | 208 | 118 | 4 | 5 | 210 | 2 | 206 | 3.76e-44 | 147 |
| MS.gene055148.t1 | AT1G17170 | 40.826 | 218 | 121 | 5 | 6 | 220 | 3 | 215 | 5.84e-44 | 147 |
| MS.gene055148.t1 | AT1G78340 | 41.627 | 209 | 117 | 4 | 6 | 212 | 3 | 208 | 9.29e-44 | 146 |
| MS.gene055148.t1 | AT1G78370 | 40.488 | 205 | 117 | 4 | 10 | 212 | 7 | 208 | 1.86e-43 | 145 |
| MS.gene055148.t1 | AT1G69920 | 37.445 | 227 | 132 | 4 | 1 | 217 | 26 | 252 | 2.17e-43 | 147 |
| MS.gene055148.t1 | AT1G74590 | 34.361 | 227 | 142 | 3 | 1 | 221 | 1 | 226 | 2.04e-42 | 143 |
| MS.gene055148.t1 | AT1G53680 | 38.571 | 210 | 124 | 4 | 1 | 207 | 1 | 208 | 8.53e-41 | 139 |
| MS.gene055148.t1 | AT1G17180 | 37.799 | 209 | 125 | 4 | 6 | 212 | 3 | 208 | 1.50e-39 | 135 |
| MS.gene055148.t1 | AT1G78360 | 39.904 | 208 | 119 | 5 | 8 | 212 | 5 | 209 | 1.21e-38 | 133 |
| MS.gene055148.t1 | AT1G17190 | 38.785 | 214 | 124 | 5 | 1 | 212 | 1 | 209 | 2.45e-38 | 132 |
| MS.gene055148.t1 | AT3G43800 | 35.577 | 208 | 123 | 7 | 4 | 204 | 2 | 205 | 1.33e-34 | 123 |
| MS.gene055148.t1 | AT5G62480 | 31.364 | 220 | 116 | 4 | 5 | 215 | 6 | 199 | 3.88e-28 | 106 |
| MS.gene055148.t1 | AT5G62480 | 31.364 | 220 | 115 | 4 | 5 | 215 | 6 | 198 | 7.97e-28 | 105 |
| MS.gene055148.t1 | AT1G78320 | 33.816 | 207 | 107 | 4 | 5 | 210 | 2 | 179 | 2.15e-27 | 103 |
| MS.gene055148.t1 | AT2G02380 | 28.837 | 215 | 134 | 6 | 5 | 207 | 9 | 216 | 1.23e-16 | 76.3 |
| MS.gene055148.t1 | AT2G02390 | 29.358 | 218 | 133 | 7 | 3 | 207 | 4 | 213 | 3.69e-16 | 74.7 |
| MS.gene055148.t1 | AT2G02390 | 28.444 | 225 | 133 | 8 | 3 | 207 | 4 | 220 | 8.62e-14 | 68.6 |
| MS.gene055148.t1 | AT2G02390 | 40.206 | 97 | 54 | 2 | 3 | 96 | 4 | 99 | 2.92e-13 | 66.2 |
Find 45 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAGCCTTGGCTCGTTTC+TGG | 0.120947 | 7.4:+39382954 | MS.gene055148:CDS |
| GAGCTTAAGGATAATTTCTT+TGG | 0.282538 | 7.4:+39384003 | MS.gene055148:CDS |
| TAAGGATCAGAAGGCAATAT+TGG | 0.299422 | 7.4:-39382929 | None:intergenic |
| ACAGGAACCTTCTTGTAAAC+AGG | 0.304362 | 7.4:-39382830 | None:intergenic |
| GCCTCCTAGAGAAGGACTTT+TGG | 0.337294 | 7.4:+39384191 | MS.gene055148:CDS |
| AATTCTTGAGAATGAGCTTA+AGG | 0.354197 | 7.4:+39383990 | MS.gene055148:CDS |
| TTCTTTGGTGGAGAGGAGAT+TGG | 0.368042 | 7.4:+39384018 | MS.gene055148:CDS |
| GGCAATTTATCCTTAACAAC+TGG | 0.375316 | 7.4:-39384171 | None:intergenic |
| TTGACTCCATTTGTAAAGCT+TGG | 0.384299 | 7.4:-39384133 | None:intergenic |
| CACCAACCATCCAGTTGTTA+AGG | 0.388600 | 7.4:+39384161 | MS.gene055148:CDS |
| TGACTCCATTTGTAAAGCTT+GGG | 0.390868 | 7.4:-39384132 | None:intergenic |
| TTTGTTGCTTCTTGTACAAT+GGG | 0.408906 | 7.4:-39384081 | None:intergenic |
| TGCTAAGATGGCATCAAATC+AGG | 0.416653 | 7.4:+39382670 | None:intergenic |
| TACAAATATGAGTTAGAAAA+GGG | 0.419037 | 7.4:+39382773 | MS.gene055148:CDS |
| GTTTGTTGCTTCTTGTACAA+TGG | 0.430175 | 7.4:-39384082 | None:intergenic |
| ATCACAAGGGATTCTGATAT+AGG | 0.433145 | 7.4:-39382872 | None:intergenic |
| GACCAAGTTCATAGATGATA+AGG | 0.434027 | 7.4:+39382976 | MS.gene055148:CDS |
| ATCTCCACCCTGCTCACAAA+TGG | 0.436953 | 7.4:-39382725 | None:intergenic |
| ATACAAATATGAGTTAGAAA+AGG | 0.446746 | 7.4:+39382772 | MS.gene055148:CDS |
| CTTAAGGATAATTTCTTTGG+TGG | 0.454634 | 7.4:+39384006 | MS.gene055148:CDS |
| GGAGATTGCTCTAACATTGA+AGG | 0.460355 | 7.4:+39382742 | MS.gene055148:CDS |
| AATTTCCCAAGCTTTACAAA+TGG | 0.474830 | 7.4:+39384127 | MS.gene055148:CDS |
| TACCTTATCATCTATGAACT+TGG | 0.479710 | 7.4:-39382978 | None:intergenic |
| ATCCTTAACAACTGGATGGT+TGG | 0.488666 | 7.4:-39384163 | None:intergenic |
| TTATCATTATGAACTAATAC+AGG | 0.517988 | 7.4:-39382848 | None:intergenic |
| GGATAATTTCTTTGGTGGAG+AGG | 0.526031 | 7.4:+39384011 | MS.gene055148:CDS |
| GATAAATTGCCTCCTAGAGA+AGG | 0.547220 | 7.4:+39384183 | MS.gene055148:CDS |
| TGATCCTTACAAAAGAGCCT+TGG | 0.548089 | 7.4:+39382943 | MS.gene055148:CDS |
| TGGCAAGTCCATTTGTGAGC+AGG | 0.549506 | 7.4:+39382717 | MS.gene055148:CDS |
| TTGAGTATGTCGATGAGACC+TGG | 0.549849 | 7.4:+39382897 | MS.gene055148:CDS |
| TAAGCCAAAAGTCCTTCTCT+AGG | 0.550201 | 7.4:-39384195 | None:intergenic |
| CAGGAACCTTCTTGTAAACA+GGG | 0.551890 | 7.4:-39382829 | None:intergenic |
| AGAACGTGAGAAAGCTATTG+AGG | 0.557970 | 7.4:+39383948 | MS.gene055148:CDS |
| ATTTATCCTTAACAACTGGA+TGG | 0.561475 | 7.4:-39384167 | None:intergenic |
| ATACAACCCTGTTTACAAGA+AGG | 0.566628 | 7.4:+39382823 | MS.gene055148:CDS |
| GGCAAGTCCATTTGTGAGCA+GGG | 0.574715 | 7.4:+39382718 | MS.gene055148:CDS |
| GAGATTGCTCTAACATTGAA+GGG | 0.597295 | 7.4:+39382743 | MS.gene055148:CDS |
| AATATGAGTTAGAAAAGGGA+AGG | 0.607275 | 7.4:+39382777 | MS.gene055148:CDS |
| CGACATACTCAAGAATCACA+AGG | 0.607291 | 7.4:-39382886 | None:intergenic |
| GCCAAAAGTCCTTCTCTAGG+AGG | 0.619286 | 7.4:-39384192 | None:intergenic |
| ACCAGTGTTTAAGTGCTGCA+CGG | 0.628510 | 7.4:+39383899 | MS.gene055148:intron |
| CTTGGTCCAGAAACGAGCCA+AGG | 0.682377 | 7.4:-39382960 | None:intergenic |
| TTGTTGCTTCTTGTACAATG+GGG | 0.684989 | 7.4:-39384080 | None:intergenic |
| GACATACTCAAGAATCACAA+GGG | 0.702786 | 7.4:-39382885 | None:intergenic |
| AAGTCCATTTGTGAGCAGGG+TGG | 0.747804 | 7.4:+39382721 | MS.gene055148:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACTTTTCTTTTTAAAATTA+CGG | - | chr7.4:39383531-39383550 | None:intergenic | 10.0% |
| !!! | TAGTTTTCATTTTTAAATTA+CGG | + | chr7.4:39383402-39383421 | MS.gene055148:intron | 10.0% |
| !! | AATAAATATGATATTTGAAG+CGG | - | chr7.4:39383635-39383654 | None:intergenic | 15.0% |
| !! | AATATTTAAGAAGAATAATC+TGG | + | chr7.4:39383765-39383784 | MS.gene055148:intron | 15.0% |
| !! | ATACAAATATGAGTTAGAAA+AGG | + | chr7.4:39382772-39382791 | MS.gene055148:CDS | 20.0% |
| !! | TACAAATATGAGTTAGAAAA+GGG | + | chr7.4:39382773-39382792 | MS.gene055148:CDS | 20.0% |
| !! | TTATCATTATGAACTAATAC+AGG | - | chr7.4:39382851-39382870 | None:intergenic | 20.0% |
| !!! | ACACTGGTTTTAAAAAATTA+AGG | - | chr7.4:39383887-39383906 | None:intergenic | 20.0% |
| !!! | ACTTTTAAAGTGTATAAATG+GGG | + | chr7.4:39383078-39383097 | MS.gene055148:intron | 20.0% |
| !!! | CACTTTTAAAGTGTATAAAT+GGG | + | chr7.4:39383077-39383096 | MS.gene055148:intron | 20.0% |
| !!! | TAAAATATTTCAAAAGCATG+TGG | + | chr7.4:39383211-39383230 | MS.gene055148:intron | 20.0% |
| !!! | TCACTTTTAAAGTGTATAAA+TGG | + | chr7.4:39383076-39383095 | MS.gene055148:intron | 20.0% |
| ! | ATAGAGAAAAACAATACATG+TGG | + | chr7.4:39383289-39383308 | MS.gene055148:intron | 25.0% |
| ! | ATGACTATTATATATGCATG+TGG | + | chr7.4:39383673-39383692 | MS.gene055148:intron | 25.0% |
| ! | TGTATATTATATGCAGAGAT+CGG | - | chr7.4:39383121-39383140 | None:intergenic | 25.0% |
| ! | TTATTCAACAAAACGAGTAA+CGG | + | chr7.4:39383650-39383669 | MS.gene055148:intron | 25.0% |
| !! | TGAAATATAATGACTTGTGA+CGG | - | chr7.4:39383722-39383741 | None:intergenic | 25.0% |
| !!! | ATGTATTGTTTTTCTCTATG+CGG | - | chr7.4:39383288-39383307 | None:intergenic | 25.0% |
| AAATACCACAAACTTCACTA+AGG | + | chr7.4:39383334-39383353 | MS.gene055148:intron | 30.0% | |
| AATACCACAAACTTCACTAA+GGG | + | chr7.4:39383335-39383354 | MS.gene055148:intron | 30.0% | |
| AATATGAGTTAGAAAAGGGA+AGG | + | chr7.4:39382777-39382796 | MS.gene055148:CDS | 30.0% | |
| AATTCTTGAGAATGAGCTTA+AGG | + | chr7.4:39383990-39384009 | MS.gene055148:CDS | 30.0% | |
| AATTTCCCAAGCTTTACAAA+TGG | + | chr7.4:39384127-39384146 | MS.gene055148:CDS | 30.0% | |
| ATTTATCCTTAACAACTGGA+TGG | - | chr7.4:39384170-39384189 | None:intergenic | 30.0% | |
| CTTAAGGATAATTTCTTTGG+TGG | + | chr7.4:39384006-39384025 | MS.gene055148:CDS | 30.0% | |
| GAGCTTAAGGATAATTTCTT+TGG | + | chr7.4:39384003-39384022 | MS.gene055148:CDS | 30.0% | |
| TACCTTATCATCTATGAACT+TGG | - | chr7.4:39382981-39383000 | None:intergenic | 30.0% | |
| ! | ATATTTCAAAAGCATGTGGA+TGG | + | chr7.4:39383215-39383234 | MS.gene055148:intron | 30.0% |
| ! | TTTGTTGCTTCTTGTACAAT+GGG | - | chr7.4:39384084-39384103 | None:intergenic | 30.0% |
| !! | CAATATTGGATTTTGTTTCC+AGG | - | chr7.4:39382918-39382937 | None:intergenic | 30.0% |
| ATACAACCCTGTTTACAAGA+AGG | + | chr7.4:39382823-39382842 | MS.gene055148:CDS | 35.0% | |
| ATACGCTAGAGAGACATTTA+GGG | - | chr7.4:39383598-39383617 | None:intergenic | 35.0% | |
| ATCACAAGGGATTCTGATAT+AGG | - | chr7.4:39382875-39382894 | None:intergenic | 35.0% | |
| GAATTACGTTCATGTGATCT+CGG | - | chr7.4:39383162-39383181 | None:intergenic | 35.0% | |
| GACATACTCAAGAATCACAA+GGG | - | chr7.4:39382888-39382907 | None:intergenic | 35.0% | |
| GACCAAGTTCATAGATGATA+AGG | + | chr7.4:39382976-39382995 | MS.gene055148:CDS | 35.0% | |
| GAGATTGCTCTAACATTGAA+GGG | + | chr7.4:39382743-39382762 | MS.gene055148:CDS | 35.0% | |
| GGCAATTTATCCTTAACAAC+TGG | - | chr7.4:39384174-39384193 | None:intergenic | 35.0% | |
| TAAGGATCAGAAGGCAATAT+TGG | - | chr7.4:39382932-39382951 | None:intergenic | 35.0% | |
| TATACGCTAGAGAGACATTT+AGG | - | chr7.4:39383599-39383618 | None:intergenic | 35.0% | |
| TGACTCCATTTGTAAAGCTT+GGG | - | chr7.4:39384135-39384154 | None:intergenic | 35.0% | |
| TGTGTTTGGATAGAAGGTTT+AGG | + | chr7.4:39383358-39383377 | MS.gene055148:intron | 35.0% | |
| TTGACTCCATTTGTAAAGCT+TGG | - | chr7.4:39384136-39384155 | None:intergenic | 35.0% | |
| ! | CAGGAAAATGTGAAGCTTTT+TGG | + | chr7.4:39382689-39382708 | MS.gene055148:CDS | 35.0% |
| ! | GTTTGTTGCTTCTTGTACAA+TGG | - | chr7.4:39384085-39384104 | None:intergenic | 35.0% |
| ! | TTGTTGCTTCTTGTACAATG+GGG | - | chr7.4:39384083-39384102 | None:intergenic | 35.0% |
| !! | TATAATGACTTGTGACGGAT+TGG | - | chr7.4:39383717-39383736 | None:intergenic | 35.0% |
| !!! | TGTGAAGCTTTTTGGAATGA+TGG | + | chr7.4:39382697-39382716 | MS.gene055148:CDS | 35.0% |
| ACAGGAACCTTCTTGTAAAC+AGG | - | chr7.4:39382833-39382852 | None:intergenic | 40.0% | |
| AGAACGTGAGAAAGCTATTG+AGG | + | chr7.4:39383948-39383967 | MS.gene055148:CDS | 40.0% | |
| ATAGAAGGTTTAGGAGTGGA+AGG | + | chr7.4:39383367-39383386 | MS.gene055148:intron | 40.0% | |
| ATCCTTAACAACTGGATGGT+TGG | - | chr7.4:39384166-39384185 | None:intergenic | 40.0% | |
| CAGGAACCTTCTTGTAAACA+GGG | - | chr7.4:39382832-39382851 | None:intergenic | 40.0% | |
| CGACATACTCAAGAATCACA+AGG | - | chr7.4:39382889-39382908 | None:intergenic | 40.0% | |
| GATAAATTGCCTCCTAGAGA+AGG | + | chr7.4:39384183-39384202 | MS.gene055148:CDS | 40.0% | |
| GGAGATTGCTCTAACATTGA+AGG | + | chr7.4:39382742-39382761 | MS.gene055148:CDS | 40.0% | |
| GGATAATTTCTTTGGTGGAG+AGG | + | chr7.4:39384011-39384030 | MS.gene055148:CDS | 40.0% | |
| TAAGCCAAAAGTCCTTCTCT+AGG | - | chr7.4:39384198-39384217 | None:intergenic | 40.0% | |
| TAGAAGGTTTAGGAGTGGAA+GGG | + | chr7.4:39383368-39383387 | MS.gene055148:intron | 40.0% | |
| TGATCCTTACAAAAGAGCCT+TGG | + | chr7.4:39382943-39382962 | MS.gene055148:CDS | 40.0% | |
| TTGGATAGAAGGTTTAGGAG+TGG | + | chr7.4:39383363-39383382 | MS.gene055148:intron | 40.0% | |
| ! | AACTTCACTAAGGGTGTGTT+TGG | + | chr7.4:39383344-39383363 | MS.gene055148:intron | 40.0% |
| ! | ATTTGAAGCGGTTCTCAATG+TGG | - | chr7.4:39383623-39383642 | None:intergenic | 40.0% |
| ! | CTGCAGTCTTCATAGCTTTT+TGG | + | chr7.4:39384055-39384074 | MS.gene055148:CDS | 40.0% |
| ! | GCTCTTTTGTAAGGATCAGA+AGG | - | chr7.4:39382941-39382960 | None:intergenic | 40.0% |
| ! | TAAGGGTGTGTTTGGATAGA+AGG | + | chr7.4:39383352-39383371 | MS.gene055148:intron | 40.0% |
| ! | TCTTTATTTGTGCGCATGTG+TGG | + | chr7.4:39383187-39383206 | MS.gene055148:intron | 40.0% |
| AGAGATCGGAGTTCGAACTT+CGG | - | chr7.4:39383107-39383126 | None:intergenic | 45.0% | |
| CACACCCTTAGTGAAGTTTG+TGG | - | chr7.4:39383342-39383361 | None:intergenic | 45.0% | |
| CACCAACCATCCAGTTGTTA+AGG | + | chr7.4:39384161-39384180 | MS.gene055148:CDS | 45.0% | |
| CTTGGATTGAGGGTTTAGGA+GGG | - | chr7.4:39383571-39383590 | None:intergenic | 45.0% | |
| TCATGTGATCTCGGTTCAGT+TGG | - | chr7.4:39383153-39383172 | None:intergenic | 45.0% | |
| TGTGCTTGGATTGAGGGTTT+AGG | - | chr7.4:39383575-39383594 | None:intergenic | 45.0% | |
| TTAGGGTGTGCTTGGATTGA+GGG | - | chr7.4:39383581-39383600 | None:intergenic | 45.0% | |
| TTCTTTGGTGGAGAGGAGAT+TGG | + | chr7.4:39384018-39384037 | MS.gene055148:CDS | 45.0% | |
| TTGAGTATGTCGATGAGACC+TGG | + | chr7.4:39382897-39382916 | MS.gene055148:CDS | 45.0% | |
| TTGGATTGAGGGTTTAGGAG+GGG | - | chr7.4:39383570-39383589 | None:intergenic | 45.0% | |
| ! | ACCAGTGTTTAAGTGCTGCA+CGG | + | chr7.4:39383899-39383918 | MS.gene055148:intron | 45.0% |
| ! | AGAGACATTTAGGGTGTGCT+TGG | - | chr7.4:39383589-39383608 | None:intergenic | 45.0% |
| ! | TGATCTCGGTTCAGTTGGTA+GGG | - | chr7.4:39383148-39383167 | None:intergenic | 45.0% |
| ! | TTTAGGGTGTGCTTGGATTG+AGG | - | chr7.4:39383582-39383601 | None:intergenic | 45.0% |
| AAGTCCATTTGTGAGCAGGG+TGG | + | chr7.4:39382721-39382740 | MS.gene055148:CDS | 50.0% | |
| ATCTCCACCCTGCTCACAAA+TGG | - | chr7.4:39382728-39382747 | None:intergenic | 50.0% | |
| GCCAAAAGTCCTTCTCTAGG+AGG | - | chr7.4:39384195-39384214 | None:intergenic | 50.0% | |
| GCTTGGATTGAGGGTTTAGG+AGG | - | chr7.4:39383572-39383591 | None:intergenic | 50.0% | |
| GGCAAGTCCATTTGTGAGCA+GGG | + | chr7.4:39382718-39382737 | MS.gene055148:CDS | 50.0% | |
| GTGATCTCGGTTCAGTTGGT+AGG | - | chr7.4:39383149-39383168 | None:intergenic | 50.0% | |
| TAGGAGTGGAAGGGAGATGA+GGG | + | chr7.4:39383377-39383396 | MS.gene055148:intron | 50.0% | |
| TCCGTGCAGCACTTAAACAC+TGG | - | chr7.4:39383903-39383922 | None:intergenic | 50.0% | |
| TGGCAAGTCCATTTGTGAGC+AGG | + | chr7.4:39382717-39382736 | MS.gene055148:CDS | 50.0% | |
| TTAGGAGTGGAAGGGAGATG+AGG | + | chr7.4:39383376-39383395 | MS.gene055148:intron | 50.0% | |
| ! | AAAGAGCCTTGGCTCGTTTC+TGG | + | chr7.4:39382954-39382973 | MS.gene055148:CDS | 50.0% |
| ! | CGAGCCAAGGCTCTTTTGTA+AGG | - | chr7.4:39382950-39382969 | None:intergenic | 50.0% |
| ! | GCCTCCTAGAGAAGGACTTT+TGG | + | chr7.4:39384191-39384210 | MS.gene055148:CDS | 50.0% |
| ATTGAGGGTTTAGGAGGGGC+AGG | - | chr7.4:39383566-39383585 | None:intergenic | 55.0% | |
| CTTGGTCCAGAAACGAGCCA+AGG | - | chr7.4:39382963-39382982 | None:intergenic | 55.0% | |
| TTGAGGGTTTAGGAGGGGCA+GGG | - | chr7.4:39383565-39383584 | None:intergenic | 55.0% | |
| GGTTTAGGAGGGGCAGGGAG+AGG | - | chr7.4:39383560-39383579 | None:intergenic | 65.0% | |
| TAGGAGGGGCAGGGAGAGGA+GGG | - | chr7.4:39383556-39383575 | None:intergenic | 65.0% | |
| TTAGGAGGGGCAGGGAGAGG+AGG | - | chr7.4:39383557-39383576 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 39382677 | 39384257 | 39382677 | ID=MS.gene055148 |
| chr7.4 | mRNA | 39382677 | 39384257 | 39382677 | ID=MS.gene055148.t1;Parent=MS.gene055148 |
| chr7.4 | exon | 39382677 | 39382997 | 39382677 | ID=MS.gene055148.t1.exon1;Parent=MS.gene055148.t1 |
| chr7.4 | CDS | 39382677 | 39382997 | 39382677 | ID=cds.MS.gene055148.t1;Parent=MS.gene055148.t1 |
| chr7.4 | exon | 39383904 | 39384257 | 39383904 | ID=MS.gene055148.t1.exon2;Parent=MS.gene055148.t1 |
| chr7.4 | CDS | 39383904 | 39384257 | 39383904 | ID=cds.MS.gene055148.t1;Parent=MS.gene055148.t1 |
| Gene Sequence |
| Protein sequence |
