Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46441.t1 | XP_003590328.1 | 96.9 | 255 | 7 | 1 | 1 | 255 | 1 | 254 | 1.80E-125 | 458.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46441.t1 | Q9ZSD4 | 70.0 | 253 | 67 | 2 | 1 | 247 | 1 | 250 | 1.1e-89 | 331.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46441.t1 | B7FI20 | 96.9 | 255 | 7 | 1 | 1 | 255 | 1 | 254 | 1.3e-125 | 458.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05015 | MS.gene46441 | 0.811928 | 5.48E-51 | -1.69E-46 |
| MS.gene051959 | MS.gene46441 | 0.804463 | 2.13E-49 | -1.69E-46 |
| MS.gene051960 | MS.gene46441 | 0.802983 | 4.33E-49 | -1.69E-46 |
| MS.gene057001 | MS.gene46441 | 0.805431 | 1.34E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46441.t1 | MTR_1g056550 | 96.863 | 255 | 7 | 1 | 1 | 255 | 1 | 254 | 0.0 | 501 |
| MS.gene46441.t1 | MTR_7g106420 | 66.537 | 257 | 72 | 3 | 1 | 257 | 1 | 243 | 3.97e-118 | 340 |
| MS.gene46441.t1 | MTR_1g056560 | 65.476 | 252 | 79 | 3 | 1 | 246 | 1 | 250 | 2.98e-116 | 337 |
| MS.gene46441.t1 | MTR_4g090900 | 57.422 | 256 | 99 | 4 | 1 | 255 | 1 | 247 | 9.75e-102 | 299 |
| MS.gene46441.t1 | MTR_2g012270 | 55.469 | 256 | 103 | 3 | 1 | 255 | 1 | 246 | 2.11e-99 | 293 |
| MS.gene46441.t1 | MTR_5g012010 | 42.412 | 257 | 137 | 3 | 1 | 246 | 1 | 257 | 5.87e-68 | 214 |
| MS.gene46441.t1 | MTR_6g028140 | 42.412 | 257 | 136 | 4 | 1 | 255 | 1 | 247 | 1.20e-63 | 202 |
| MS.gene46441.t1 | MTR_2g088700 | 39.844 | 256 | 149 | 3 | 1 | 255 | 1 | 252 | 9.13e-59 | 189 |
| MS.gene46441.t1 | MTR_2g088700 | 39.844 | 256 | 149 | 3 | 1 | 255 | 1 | 252 | 1.17e-58 | 189 |
| MS.gene46441.t1 | MTR_5g020670 | 39.919 | 248 | 137 | 4 | 1 | 246 | 1 | 238 | 1.65e-49 | 166 |
| MS.gene46441.t1 | MTR_8g073900 | 31.361 | 169 | 92 | 3 | 1 | 168 | 1 | 146 | 2.40e-16 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46441.t1 | AT3G11820 | 73.756 | 221 | 58 | 0 | 27 | 247 | 30 | 250 | 1.05e-118 | 344 |
| MS.gene46441.t1 | AT3G11820 | 74.429 | 219 | 56 | 0 | 29 | 247 | 1 | 219 | 2.10e-118 | 342 |
| MS.gene46441.t1 | AT3G52400 | 62.151 | 251 | 89 | 3 | 1 | 247 | 1 | 249 | 4.79e-101 | 299 |
| MS.gene46441.t1 | AT1G11250 | 55.686 | 255 | 99 | 2 | 1 | 255 | 1 | 241 | 9.43e-101 | 296 |
| MS.gene46441.t1 | AT1G61290 | 57.724 | 246 | 96 | 1 | 1 | 246 | 1 | 238 | 3.14e-100 | 295 |
| MS.gene46441.t1 | AT1G61290 | 57.724 | 246 | 96 | 1 | 1 | 246 | 1 | 238 | 3.14e-100 | 295 |
| MS.gene46441.t1 | AT4G03330 | 55.242 | 248 | 102 | 2 | 1 | 246 | 1 | 241 | 5.20e-93 | 277 |
| MS.gene46441.t1 | AT3G03800 | 42.537 | 268 | 139 | 6 | 1 | 266 | 1 | 255 | 1.48e-65 | 207 |
| MS.gene46441.t1 | AT3G03800 | 42.537 | 268 | 139 | 6 | 1 | 266 | 1 | 255 | 1.48e-65 | 207 |
| MS.gene46441.t1 | AT1G08560 | 40.551 | 254 | 136 | 4 | 1 | 246 | 1 | 247 | 1.91e-59 | 191 |
| MS.gene46441.t1 | AT5G08080 | 44.706 | 255 | 133 | 3 | 1 | 255 | 1 | 247 | 3.44e-58 | 188 |
| MS.gene46441.t1 | AT5G08080 | 44.706 | 255 | 133 | 3 | 1 | 255 | 1 | 247 | 3.44e-58 | 188 |
| MS.gene46441.t1 | AT5G08080 | 42.857 | 266 | 133 | 5 | 1 | 255 | 1 | 258 | 2.35e-56 | 184 |
| MS.gene46441.t1 | AT2G18260 | 37.198 | 207 | 123 | 2 | 40 | 246 | 46 | 245 | 1.78e-41 | 145 |
| MS.gene46441.t1 | AT2G18260 | 37.198 | 207 | 123 | 2 | 40 | 246 | 46 | 245 | 1.78e-41 | 145 |
| MS.gene46441.t1 | AT5G08080 | 42.512 | 207 | 112 | 2 | 1 | 207 | 1 | 200 | 1.66e-37 | 132 |
| MS.gene46441.t1 | AT5G08080 | 42.512 | 207 | 112 | 2 | 1 | 207 | 1 | 200 | 1.66e-37 | 132 |
Find 69 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGCCTCTCTTGAATTTCT+TGG | 0.088352 | 1.2:+44506170 | None:intergenic |
| GGAGCTTCACCAAGTGTTTA+TGG | 0.187321 | 1.2:-44506116 | MS.gene46441:CDS |
| AGCCACATCAGCATCCATTT+TGG | 0.243803 | 1.2:+44507445 | None:intergenic |
| CAGAGGATATTTGTTGTCTA+AGG | 0.290767 | 1.2:+44507246 | None:intergenic |
| GTTTATGGACATGTCTGTTT+TGG | 0.324253 | 1.2:-44506101 | MS.gene46441:CDS |
| TCCTCTCATGGGAGACTCTA+AGG | 0.337274 | 1.2:+44507510 | None:intergenic |
| GAAGGATATTCGCTCCAAAA+TGG | 0.357939 | 1.2:-44507459 | MS.gene46441:CDS |
| TGTTTGCTCTACCTTGTTGT+TGG | 0.360573 | 1.2:+44506206 | None:intergenic |
| GAAGAAGCTTAAGGACTCTA+TGG | 0.363323 | 1.2:-44507282 | MS.gene46441:CDS |
| ACACCGGTTTGTGCGGTATT+CGG | 0.365266 | 1.2:+44507608 | None:intergenic |
| GCGCCACTAACCGTCGAAAC+TGG | 0.366243 | 1.2:-44505012 | MS.gene46441:CDS |
| AATATGAATGATTTATTCTC+TGG | 0.376169 | 1.2:-44507704 | MS.gene46441:CDS |
| AGTAGGAGTTTGCCTGGTGC+TGG | 0.388193 | 1.2:-44507356 | MS.gene46441:CDS |
| GAGTTTGCCTGGTGCTGGAC+CGG | 0.392987 | 1.2:-44507351 | MS.gene46441:CDS |
| CGTAGATACTATACTGTTAC+CGG | 0.398160 | 1.2:-44507203 | MS.gene46441:CDS |
| TTTCTCTCGGTTCCGTAACT+CGG | 0.405483 | 1.2:-44507678 | MS.gene46441:CDS |
| TGTCAGTTTCGACATTTATG+AGG | 0.410328 | 1.2:+44505070 | None:intergenic |
| GAAGGGTCTTGCTCCTCTCA+TGG | 0.411456 | 1.2:+44507498 | None:intergenic |
| ATCACATGGTGGTGGTTGTC+TGG | 0.434052 | 1.2:+44507644 | None:intergenic |
| TGGTTTGAGGAAGAAGCTTA+AGG | 0.454919 | 1.2:-44507291 | MS.gene46441:CDS |
| GCTCCAGTTTCGACGGTTAG+TGG | 0.458916 | 1.2:+44505009 | None:intergenic |
| TATTCTCTGGCTCTTTCTCT+CGG | 0.459600 | 1.2:-44507691 | MS.gene46441:CDS |
| TCCTACTAGCCTCGTTGGAC+CGG | 0.465222 | 1.2:+44507372 | None:intergenic |
| AGTTTGCCTGGTGCTGGACC+GGG | 0.485224 | 1.2:-44507350 | MS.gene46441:CDS |
| AGGTGTTAAAGAGGAGTTGA+AGG | 0.487492 | 1.2:-44507555 | MS.gene46441:CDS |
| AAGGGTCTTGCTCCTCTCAT+GGG | 0.499489 | 1.2:+44507499 | None:intergenic |
| GACGAACCCGGTCCAGCACC+AGG | 0.506977 | 1.2:+44507344 | None:intergenic |
| TTTGTCATCTGGATTCTCTC+CGG | 0.518836 | 1.2:+44507184 | None:intergenic |
| TCACCGAATACCGCACAAAC+CGG | 0.521309 | 1.2:-44507611 | MS.gene46441:CDS |
| CTCCAAAATGGATGCTGATG+TGG | 0.523297 | 1.2:-44507447 | MS.gene46441:CDS |
| GCGAAACTTGATCCGAGTTA+CGG | 0.527599 | 1.2:+44507666 | None:intergenic |
| ACCGGTCCAACGAGGCTAGT+AGG | 0.530681 | 1.2:-44507373 | MS.gene46441:CDS |
| GAGGCTAGTAGGAGTTTGCC+TGG | 0.534639 | 1.2:-44507362 | MS.gene46441:CDS |
| ACCGGTCAAGTGCCTCGAGC+CGG | 0.535814 | 1.2:+44507390 | None:intergenic |
| AGAGATAGAGAGAAATCTCA+TGG | 0.536636 | 1.2:-44506137 | MS.gene46441:CDS |
| TACAGTTTCTCTGTATTCAG+AGG | 0.543122 | 1.2:+44507229 | None:intergenic |
| TCCCATAGCAGTTGACACAT+TGG | 0.546405 | 1.2:-44505034 | MS.gene46441:CDS |
| TCCGGCTCGAGGCACTTGAC+CGG | 0.547953 | 1.2:-44507391 | MS.gene46441:CDS |
| AGAAGTCGAAGGTGTTAAAG+AGG | 0.548635 | 1.2:-44507564 | MS.gene46441:CDS |
| GACCGGGTTCGTCCTCAGAC+CGG | 0.551426 | 1.2:-44507334 | MS.gene46441:CDS |
| CGCCAATGTGTCAACTGCTA+TGG | 0.552700 | 1.2:+44505032 | None:intergenic |
| GTCAGTTTCGACATTTATGA+GGG | 0.553055 | 1.2:+44505071 | None:intergenic |
| TATACATACCAGTGGAAATG+AGG | 0.555717 | 1.2:+44507150 | None:intergenic |
| GTTGATCTCCTCATTTCCAC+TGG | 0.557952 | 1.2:-44507158 | MS.gene46441:intron |
| TTCGACATTTATGAGGGTAA+CGG | 0.559996 | 1.2:+44505077 | None:intergenic |
| CAAACTCCTACTAGCCTCGT+TGG | 0.563637 | 1.2:+44507367 | None:intergenic |
| GCCAATGTGTCAACTGCTAT+GGG | 0.564920 | 1.2:+44505033 | None:intergenic |
| GTCCGGTCTGAGGACGAACC+CGG | 0.570848 | 1.2:+44507332 | None:intergenic |
| CAGACATGTCCATAAACACT+TGG | 0.571715 | 1.2:+44506107 | None:intergenic |
| AACTCAGGCTCCAGTTTCGA+CGG | 0.572488 | 1.2:+44505002 | None:intergenic |
| ACAAGGTAGAGCAAACATCA+TGG | 0.584967 | 1.2:-44506200 | MS.gene46441:CDS |
| CATCTGTGGTGAGTGGTTTG+AGG | 0.587043 | 1.2:-44507304 | MS.gene46441:CDS |
| TCACCACAGATGTTCTAGTC+CGG | 0.592132 | 1.2:+44507315 | None:intergenic |
| AAGCTAAACTTGTTAAACTC+CGG | 0.596720 | 1.2:-44507409 | MS.gene46441:CDS |
| GCCTTAGAGTCTCCCATGAG+AGG | 0.597298 | 1.2:-44507511 | MS.gene46441:CDS |
| GAGATGAACACCGGTTTGTG+CGG | 0.601265 | 1.2:+44507601 | None:intergenic |
| GTGATGACATTTCGATCACA+TGG | 0.606578 | 1.2:+44507630 | None:intergenic |
| ACATTTCGATCACATGGTGG+TGG | 0.613048 | 1.2:+44507636 | None:intergenic |
| GAATTTGTCGAGATGAACAC+CGG | 0.632865 | 1.2:+44507592 | None:intergenic |
| AAATTCTTCGAAGAAGTCGA+AGG | 0.646226 | 1.2:-44507575 | MS.gene46441:CDS |
| AGATGTTCTAGTCCGGTCTG+AGG | 0.652102 | 1.2:+44507322 | None:intergenic |
| TCACAGCGCGAAAACTGTGA+AGG | 0.652148 | 1.2:-44507477 | MS.gene46441:CDS |
| CAATCCAAGAAATTCAAGAG+AGG | 0.658855 | 1.2:-44506174 | MS.gene46441:CDS |
| ACTTGTTAAACTCCGGCTCG+AGG | 0.660615 | 1.2:-44507402 | MS.gene46441:CDS |
| ACTAGAACATCTGTGGTGAG+TGG | 0.667098 | 1.2:-44507311 | MS.gene46441:CDS |
| AGACCGGACTAGAACATCTG+TGG | 0.678063 | 1.2:-44507318 | MS.gene46441:CDS |
| AGTGGAAATGAGGAGATCAA+CGG | 0.679065 | 1.2:+44507160 | None:intergenic |
| GGCACTTGACCGGTCCAACG+AGG | 0.716796 | 1.2:-44507381 | MS.gene46441:CDS |
| ATGACATTTCGATCACATGG+TGG | 0.749280 | 1.2:+44507633 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCTTTAACAAATTAAAA+TGG | - | chr1.2:44507399-44507418 | MS.gene46441:CDS | 10.0% |
| !! | GAATAAGAAAAAAATATATA+AGG | + | chr1.2:44507230-44507249 | None:intergenic | 10.0% |
| !! | TATAACATATATAAGTATAT+TGG | + | chr1.2:44506281-44506300 | None:intergenic | 10.0% |
| !! | TTAAATTTCATAAAGATTTA+TGG | + | chr1.2:44505827-44505846 | None:intergenic | 10.0% |
| !!! | ATTTTTATAATTCATTCTTA+AGG | - | chr1.2:44505688-44505707 | MS.gene46441:intron | 10.0% |
| !!! | TTTTTATAATTCATTCTTAA+GGG | - | chr1.2:44505689-44505708 | MS.gene46441:intron | 10.0% |
| !! | AATAAAAAGAAACTTAAGTA+TGG | + | chr1.2:44506249-44506268 | None:intergenic | 15.0% |
| !! | AGTAATCAAAATTTCAAAAT+GGG | + | chr1.2:44506023-44506042 | None:intergenic | 15.0% |
| !! | ATGATAACAAAAAACAAAAA+AGG | - | chr1.2:44507597-44507616 | MS.gene46441:CDS | 15.0% |
| !! | GTTTATTAAATTTATATGTG+TGG | - | chr1.2:44507154-44507173 | MS.gene46441:intron | 15.0% |
| !! | TAGTAATCAAAATTTCAAAA+TGG | + | chr1.2:44506024-44506043 | None:intergenic | 15.0% |
| !! | TATGTTATATGTATAAAATC+CGG | - | chr1.2:44506292-44506311 | MS.gene46441:intron | 15.0% |
| !! | TTATAATATTATAATCTTGG+TGG | - | chr1.2:44506849-44506868 | MS.gene46441:intron | 15.0% |
| !!! | ATATTTTTTCATATATTGGT+TGG | - | chr1.2:44506953-44506972 | MS.gene46441:intron | 15.0% |
| !!! | AACTATTTTTTAAGGACAAT+AGG | + | chr1.2:44506807-44506826 | None:intergenic | 20.0% |
| !!! | ACATCTTTTTAATGTAACAT+AGG | - | chr1.2:44506447-44506466 | MS.gene46441:intron | 20.0% |
| !!! | AGTCTCAAAACTATTTTTTA+AGG | + | chr1.2:44506815-44506834 | None:intergenic | 20.0% |
| !!! | ATTTTTATTTCAGAATCGAA+AGG | + | chr1.2:44505897-44505916 | None:intergenic | 20.0% |
| !!! | TACTTGATTCATTTCTTTTT+AGG | + | chr1.2:44506207-44506226 | None:intergenic | 20.0% |
| !!! | TGCATTGTTTAATTTTACTT+GGG | - | chr1.2:44507285-44507304 | MS.gene46441:CDS | 20.0% |
| !!! | TTGAAGTGAAAGTTTTTAAT+AGG | - | chr1.2:44506350-44506369 | MS.gene46441:intron | 20.0% |
| !!! | TTGCATTGTTTAATTTTACT+TGG | - | chr1.2:44507284-44507303 | MS.gene46441:CDS | 20.0% |
| ! | AAAAAACAAAAAAGGATGCA+GGG | - | chr1.2:44507605-44507624 | MS.gene46441:CDS | 25.0% |
| ! | AAAAAAGAAACCATATACTC+CGG | + | chr1.2:44506314-44506333 | None:intergenic | 25.0% |
| ! | AATAATGAGGAGAATTATGA+TGG | + | chr1.2:44506766-44506785 | None:intergenic | 25.0% |
| ! | ATGAGAGTTACTATATGTAA+TGG | + | chr1.2:44507550-44507569 | None:intergenic | 25.0% |
| ! | ATTAAATTTATATGTGTGGC+AGG | - | chr1.2:44507158-44507177 | MS.gene46441:intron | 25.0% |
| ! | CTATGATCAAGATAATAATG+AGG | + | chr1.2:44506779-44506798 | None:intergenic | 25.0% |
| !! | AAGTGAAAGTTTTTAATAGG+AGG | - | chr1.2:44506353-44506372 | MS.gene46441:intron | 25.0% |
| !! | TCAAGAATTTTATCCCATTT+TGG | - | chr1.2:44507066-44507085 | MS.gene46441:intron | 25.0% |
| !!! | AGTTTTGAGACTTTTCAAAT+GGG | - | chr1.2:44506823-44506842 | MS.gene46441:intron | 25.0% |
| !!! | TAGTTTTGAGACTTTTCAAA+TGG | - | chr1.2:44506822-44506841 | MS.gene46441:intron | 25.0% |
| !!! | TTTTCATATATTGGTTGGTT+TGG | - | chr1.2:44506958-44506977 | MS.gene46441:intron | 25.0% |
| AAAAACAAAAAAGGATGCAG+GGG | - | chr1.2:44507606-44507625 | MS.gene46441:CDS | 30.0% | |
| ACACAGCATCATACAAATTT+GGG | - | chr1.2:44505957-44505976 | MS.gene46441:intron | 30.0% | |
| AGGATATAGATGAATGTTCA+TGG | - | chr1.2:44507107-44507126 | MS.gene46441:intron | 30.0% | |
| ATATAGATGAATGTTCATGG+TGG | - | chr1.2:44507110-44507129 | MS.gene46441:intron | 30.0% | |
| CAAAAAACAAAAAAGGATGC+AGG | - | chr1.2:44507604-44507623 | MS.gene46441:CDS | 30.0% | |
| GCTGTGTACATAGAAAAATT+TGG | + | chr1.2:44505944-44505963 | None:intergenic | 30.0% | |
| GTGTACATAGAAAAATTTGG+AGG | + | chr1.2:44505941-44505960 | None:intergenic | 30.0% | |
| TAACTCTCATACAAAGAAGT+GGG | - | chr1.2:44507560-44507579 | MS.gene46441:CDS | 30.0% | |
| TACACAGCATCATACAAATT+TGG | - | chr1.2:44505956-44505975 | MS.gene46441:intron | 30.0% | |
| TGAAAAGAGAAAAGAAGAGA+GGG | - | chr1.2:44505735-44505754 | MS.gene46441:intron | 30.0% | |
| TGAGATTCAAATTCTGTTGA+AGG | + | chr1.2:44506129-44506148 | None:intergenic | 30.0% | |
| TGTATAAAATCCGGAGTATA+TGG | - | chr1.2:44506301-44506320 | MS.gene46441:intron | 30.0% | |
| TTCAAAATGGGAATTTGATC+AGG | + | chr1.2:44506011-44506030 | None:intergenic | 30.0% | |
| TTGAAAAGAGAAAAGAAGAG+AGG | - | chr1.2:44505734-44505753 | MS.gene46441:intron | 30.0% | |
| ! | CTGATAATGTCGATATTGTT+AGG | - | chr1.2:44506096-44506115 | MS.gene46441:CDS | 30.0% |
| ! | GGTGTAATTCTTTTGTACAA+TGG | + | chr1.2:44507209-44507228 | None:intergenic | 30.0% |
| ! | TGAAAGTTTTTAATAGGAGG+TGG | - | chr1.2:44506356-44506375 | MS.gene46441:intron | 30.0% |
| !! | AAGCTAAACTTGTTAAACTC+CGG | - | chr1.2:44505297-44505316 | MS.gene46441:intron | 30.0% |
| !! | TCATTCTTAAGGGTATCTTT+AGG | - | chr1.2:44505699-44505718 | MS.gene46441:intron | 30.0% |
| AAATTCTTCGAAGAAGTCGA+AGG | - | chr1.2:44505131-44505150 | MS.gene46441:intron | 35.0% | |
| ACCAAATGAATAGCAGAAAG+TGG | - | chr1.2:44506730-44506749 | MS.gene46441:intron | 35.0% | |
| AGAGATAGAGAGAAATCTCA+TGG | - | chr1.2:44506569-44506588 | MS.gene46441:intron | 35.0% | |
| ATCGACATTATCAGTTGAGT+TGG | + | chr1.2:44506090-44506109 | None:intergenic | 35.0% | |
| CAAAAAGCAATCCAACAACA+AGG | - | chr1.2:44506489-44506508 | MS.gene46441:intron | 35.0% | |
| CAATCCAAGAAATTCAAGAG+AGG | - | chr1.2:44506532-44506551 | MS.gene46441:intron | 35.0% | |
| CGTAGATACTATACTGTTAC+CGG | - | chr1.2:44505503-44505522 | MS.gene46441:intron | 35.0% | |
| CTAATTCGTATGTTAGAGGT+GGG | - | chr1.2:44506679-44506698 | MS.gene46441:intron | 35.0% | |
| GTAACTCTCATACAAAGAAG+TGG | - | chr1.2:44507559-44507578 | MS.gene46441:CDS | 35.0% | |
| GTCAGTTTCGACATTTATGA+GGG | + | chr1.2:44507638-44507657 | None:intergenic | 35.0% | |
| TAATGTCGATATTGTTAGGC+CGG | - | chr1.2:44506100-44506119 | MS.gene46441:CDS | 35.0% | |
| TAATTCGTATGTTAGAGGTG+GGG | - | chr1.2:44506680-44506699 | MS.gene46441:intron | 35.0% | |
| TACAGTTTCTCTGTATTCAG+AGG | + | chr1.2:44505480-44505499 | None:intergenic | 35.0% | |
| TATACATACCAGTGGAAATG+AGG | + | chr1.2:44505559-44505578 | None:intergenic | 35.0% | |
| TCAATCACAAGGTGAACAAT+TGG | - | chr1.2:44506629-44506648 | MS.gene46441:intron | 35.0% | |
| TCCAATTCACATGCCAAAAT+GGG | + | chr1.2:44507082-44507101 | None:intergenic | 35.0% | |
| TCCACTTTCTGCTATTCATT+TGG | + | chr1.2:44506734-44506753 | None:intergenic | 35.0% | |
| TGTCAGTTTCGACATTTATG+AGG | + | chr1.2:44507639-44507658 | None:intergenic | 35.0% | |
| TTCGACATTTATGAGGGTAA+CGG | + | chr1.2:44507632-44507651 | None:intergenic | 35.0% | |
| ! | GTTTATGGACATGTCTGTTT+TGG | - | chr1.2:44506605-44506624 | MS.gene46441:intron | 35.0% |
| ! | TGATGATGTATACATACCAG+TGG | + | chr1.2:44505567-44505586 | None:intergenic | 35.0% |
| !! | CAGAGGATATTTGTTGTCTA+AGG | + | chr1.2:44505463-44505482 | None:intergenic | 35.0% |
| !! | TCAGTTGAGTTGGATCTTAT+AGG | + | chr1.2:44506080-44506099 | None:intergenic | 35.0% |
| !! | TTCTTAAGGGTATCTTTAGG+TGG | - | chr1.2:44505702-44505721 | MS.gene46441:intron | 35.0% |
| !!! | TCTGTTTTGGTTCAATCACA+AGG | - | chr1.2:44506618-44506637 | MS.gene46441:intron | 35.0% |
| !!! | TCTTGACTAGTTTTTCCTCA+AGG | + | chr1.2:44507052-44507071 | None:intergenic | 35.0% |
| ACAAGGTAGAGCAAACATCA+TGG | - | chr1.2:44506506-44506525 | MS.gene46441:intron | 40.0% | |
| ACTTTCAACACACCTTGTGT+GGG | + | chr1.2:44507456-44507475 | None:intergenic | 40.0% | |
| AGGTGTTAAAGAGGAGTTGA+AGG | - | chr1.2:44505151-44505170 | MS.gene46441:intron | 40.0% | |
| AGTGGAAATGAGGAGATCAA+CGG | + | chr1.2:44505549-44505568 | None:intergenic | 40.0% | |
| ATGACATTTCGATCACATGG+TGG | + | chr1.2:44505076-44505095 | None:intergenic | 40.0% | |
| CAGACATGTCCATAAACACT+TGG | + | chr1.2:44506602-44506621 | None:intergenic | 40.0% | |
| CATGCCTCTCTTGAATTTCT+TGG | + | chr1.2:44506539-44506558 | None:intergenic | 40.0% | |
| CGTGCTAATTCGTATGTTAG+AGG | - | chr1.2:44506675-44506694 | MS.gene46441:intron | 40.0% | |
| CTCCAATTCACATGCCAAAA+TGG | + | chr1.2:44507083-44507102 | None:intergenic | 40.0% | |
| GAAGAAGCTTAAGGACTCTA+TGG | - | chr1.2:44505424-44505443 | MS.gene46441:intron | 40.0% | |
| GAAGGATATTCGCTCCAAAA+TGG | - | chr1.2:44505247-44505266 | MS.gene46441:intron | 40.0% | |
| GAATTTGTCGAGATGAACAC+CGG | + | chr1.2:44505117-44505136 | None:intergenic | 40.0% | |
| GCTAATTCGTATGTTAGAGG+TGG | - | chr1.2:44506678-44506697 | MS.gene46441:intron | 40.0% | |
| GGATAATATTGAAAGCCACG+TGG | - | chr1.2:44506650-44506669 | MS.gene46441:intron | 40.0% | |
| GTGATGACATTTCGATCACA+TGG | + | chr1.2:44505079-44505098 | None:intergenic | 40.0% | |
| TAGTTGACCATGACCATCAT+GGG | + | chr1.2:44507029-44507048 | None:intergenic | 40.0% | |
| TGGTTTGAGGAAGAAGCTTA+AGG | - | chr1.2:44505415-44505434 | MS.gene46441:intron | 40.0% | |
| TTTGTCATCTGGATTCTCTC+CGG | + | chr1.2:44505525-44505544 | None:intergenic | 40.0% | |
| ! | TGTTTGCTCTACCTTGTTGT+TGG | + | chr1.2:44506503-44506522 | None:intergenic | 40.0% |
| !! | AGAAGTCGAAGGTGTTAAAG+AGG | - | chr1.2:44505142-44505161 | MS.gene46441:intron | 40.0% |
| !! | AGATCAACGGTTTTGTCATC+TGG | + | chr1.2:44505536-44505555 | None:intergenic | 40.0% |
| !! | CAGGAGTTCAATTGTTTTGC+GGG | - | chr1.2:44507177-44507196 | MS.gene46441:CDS | 40.0% |
| !! | CATTTTGGCATGTGAATTGG+AGG | - | chr1.2:44507081-44507100 | MS.gene46441:intron | 40.0% |
| !! | GCAGGAGTTCAATTGTTTTG+CGG | - | chr1.2:44507176-44507195 | MS.gene46441:CDS | 40.0% |
| !! | TAAGGGTATCTTTAGGTGGA+AGG | - | chr1.2:44505706-44505725 | MS.gene46441:intron | 40.0% |
| !! | TATTCTCTGGCTCTTTCTCT+CGG | - | chr1.2:44505015-44505034 | MS.gene46441:CDS | 40.0% |
| !! | TCCCATTTTGGCATGTGAAT+TGG | - | chr1.2:44507078-44507097 | MS.gene46441:intron | 40.0% |
| !! | TGATTTCTAGAACCCCATGA+TGG | - | chr1.2:44507013-44507032 | MS.gene46441:intron | 40.0% |
| ACATTTCGATCACATGGTGG+TGG | + | chr1.2:44505073-44505092 | None:intergenic | 45.0% | |
| ACTAGAACATCTGTGGTGAG+TGG | - | chr1.2:44505395-44505414 | MS.gene46441:intron | 45.0% | |
| AGTTGACCATGACCATCATG+GGG | + | chr1.2:44507028-44507047 | None:intergenic | 45.0% | |
| ATACCATGCCAGAGTTGTCA+AGG | + | chr1.2:44506926-44506945 | None:intergenic | 45.0% | |
| CACTTTCAACACACCTTGTG+TGG | + | chr1.2:44507457-44507476 | None:intergenic | 45.0% | |
| CTCCAAAATGGATGCTGATG+TGG | - | chr1.2:44505259-44505278 | MS.gene46441:intron | 45.0% | |
| CTTTCAACACACCTTGTGTG+GGG | + | chr1.2:44507455-44507474 | None:intergenic | 45.0% | |
| GCCAATGTGTCAACTGCTAT+GGG | + | chr1.2:44507676-44507695 | None:intergenic | 45.0% | |
| GCGAAACTTGATCCGAGTTA+CGG | + | chr1.2:44505043-44505062 | None:intergenic | 45.0% | |
| GGAGCTTCACCAAGTGTTTA+TGG | - | chr1.2:44506590-44506609 | MS.gene46441:intron | 45.0% | |
| GTAGTTGACCATGACCATCA+TGG | + | chr1.2:44507030-44507049 | None:intergenic | 45.0% | |
| GTTGATCTCCTCATTTCCAC+TGG | - | chr1.2:44505548-44505567 | MS.gene46441:intron | 45.0% | |
| TCACCACAGATGTTCTAGTC+CGG | + | chr1.2:44505394-44505413 | None:intergenic | 45.0% | |
| TCCAACAGTTGCATGTTGCT+AGG | - | chr1.2:44506703-44506722 | MS.gene46441:intron | 45.0% | |
| TCCCATAGCAGTTGACACAT+TGG | - | chr1.2:44507672-44507691 | MS.gene46441:CDS | 45.0% | |
| TCCTAGCAACATGCAACTGT+TGG | + | chr1.2:44506707-44506726 | None:intergenic | 45.0% | |
| TTTCTCTCGGTTCCGTAACT+CGG | - | chr1.2:44505028-44505047 | MS.gene46441:CDS | 45.0% | |
| ! | AGCCACATCAGCATCCATTT+TGG | + | chr1.2:44505264-44505283 | None:intergenic | 45.0% |
| ! | GGTGGCTATGACTAGTTCAA+AGG | - | chr1.2:44506867-44506886 | MS.gene46441:intron | 45.0% |
| !! | CAAATTCTGTTGAAGGCGTC+CGG | + | chr1.2:44506122-44506141 | None:intergenic | 45.0% |
| !! | ATATTATAATATTATAATCT+TGG | - | chr1.2:44506846-44506865 | MS.gene46441:intron | 5.0% |
| !!! | ATAAATATTTTTTCATATAT+TGG | - | chr1.2:44506949-44506968 | MS.gene46441:intron | 5.0% |
| AAGGGTCTTGCTCCTCTCAT+GGG | + | chr1.2:44505210-44505229 | None:intergenic | 50.0% | |
| AGAGTGATTCACCCCACACA+AGG | - | chr1.2:44507441-44507460 | MS.gene46441:CDS | 50.0% | |
| AGATGTTCTAGTCCGGTCTG+AGG | + | chr1.2:44505387-44505406 | None:intergenic | 50.0% | |
| CATCTGTGGTGAGTGGTTTG+AGG | - | chr1.2:44505402-44505421 | MS.gene46441:intron | 50.0% | |
| CGCCAATGTGTCAACTGCTA+TGG | + | chr1.2:44507677-44507696 | None:intergenic | 50.0% | |
| CTAGAACCCCATGATGGTCA+TGG | - | chr1.2:44507019-44507038 | MS.gene46441:intron | 50.0% | |
| GGCATGTGAATTGGAGGAGA+AGG | - | chr1.2:44507087-44507106 | MS.gene46441:intron | 50.0% | |
| GGTCATGGTCAACTACCTTG+AGG | - | chr1.2:44507034-44507053 | MS.gene46441:intron | 50.0% | |
| TCACAGCGCGAAAACTGTGA+AGG | - | chr1.2:44505229-44505248 | MS.gene46441:intron | 50.0% | |
| TCACCGAATACCGCACAAAC+CGG | - | chr1.2:44505095-44505114 | MS.gene46441:intron | 50.0% | |
| TCATGCTGCCTTGACAACTC+TGG | - | chr1.2:44506915-44506934 | MS.gene46441:intron | 50.0% | |
| TCCTCTCATGGGAGACTCTA+AGG | + | chr1.2:44505199-44505218 | None:intergenic | 50.0% | |
| TGTGTGGGGTGAATCACTCT+TGG | + | chr1.2:44507441-44507460 | None:intergenic | 50.0% | |
| ! | ACTTGTTAAACTCCGGCTCG+AGG | - | chr1.2:44505304-44505323 | MS.gene46441:intron | 50.0% |
| ! | AGACCGGACTAGAACATCTG+TGG | - | chr1.2:44505388-44505407 | MS.gene46441:intron | 50.0% |
| ! | CAAACTCCTACTAGCCTCGT+TGG | + | chr1.2:44505342-44505361 | None:intergenic | 50.0% |
| ! | CACAGTTTTCGCGCTGTGAA+GGG | + | chr1.2:44505228-44505247 | None:intergenic | 50.0% |
| ! | TCACAGTTTTCGCGCTGTGA+AGG | + | chr1.2:44505229-44505248 | None:intergenic | 50.0% |
| !! | ACACCGGTTTGTGCGGTATT+CGG | + | chr1.2:44505101-44505120 | None:intergenic | 50.0% |
| !! | ATCACATGGTGGTGGTTGTC+TGG | + | chr1.2:44505065-44505084 | None:intergenic | 50.0% |
| !! | GAGATGAACACCGGTTTGTG+CGG | + | chr1.2:44505108-44505127 | None:intergenic | 50.0% |
| ACGAATTAGCACGTGCCACG+TGG | + | chr1.2:44506668-44506687 | None:intergenic | 55.0% | |
| AGTAGGAGTTTGCCTGGTGC+TGG | - | chr1.2:44505350-44505369 | MS.gene46441:intron | 55.0% | |
| CTGCCTTGACAACTCTGGCA+TGG | - | chr1.2:44506920-44506939 | MS.gene46441:intron | 55.0% | |
| GAAGGGTCTTGCTCCTCTCA+TGG | + | chr1.2:44505211-44505230 | None:intergenic | 55.0% | |
| GAGGCTAGTAGGAGTTTGCC+TGG | - | chr1.2:44505344-44505363 | MS.gene46441:intron | 55.0% | |
| GCCTTAGAGTCTCCCATGAG+AGG | - | chr1.2:44505195-44505214 | MS.gene46441:intron | 55.0% | |
| GCTCCAGTTTCGACGGTTAG+TGG | + | chr1.2:44507700-44507719 | None:intergenic | 55.0% | |
| ! | TCCTACTAGCCTCGTTGGAC+CGG | + | chr1.2:44505337-44505356 | None:intergenic | 55.0% |
| ACCGGTCCAACGAGGCTAGT+AGG | - | chr1.2:44505333-44505352 | MS.gene46441:intron | 60.0% | |
| GCGCCACTAACCGTCGAAAC+TGG | - | chr1.2:44507694-44507713 | MS.gene46441:CDS | 60.0% | |
| ! | AGTTTGCCTGGTGCTGGACC+GGG | - | chr1.2:44505356-44505375 | MS.gene46441:intron | 60.0% |
| ! | GAGTTTGCCTGGTGCTGGAC+CGG | - | chr1.2:44505355-44505374 | MS.gene46441:intron | 60.0% |
| ACCGGTCAAGTGCCTCGAGC+CGG | + | chr1.2:44505319-44505338 | None:intergenic | 65.0% | |
| GACCGGGTTCGTCCTCAGAC+CGG | - | chr1.2:44505372-44505391 | MS.gene46441:intron | 65.0% | |
| GGCACTTGACCGGTCCAACG+AGG | - | chr1.2:44505325-44505344 | MS.gene46441:intron | 65.0% | |
| GTCCGGTCTGAGGACGAACC+CGG | + | chr1.2:44505377-44505396 | None:intergenic | 65.0% | |
| ! | TCCGGCTCGAGGCACTTGAC+CGG | - | chr1.2:44505315-44505334 | MS.gene46441:intron | 65.0% |
| GACGAACCCGGTCCAGCACC+AGG | + | chr1.2:44505365-44505384 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 44505005 | 44507723 | 44505005 | ID=MS.gene46441 |
| chr1.2 | mRNA | 44505005 | 44507723 | 44505005 | ID=MS.gene46441.t1;Parent=MS.gene46441 |
| chr1.2 | exon | 44507159 | 44507723 | 44507159 | ID=MS.gene46441.t1.exon1;Parent=MS.gene46441.t1 |
| chr1.2 | CDS | 44507159 | 44507723 | 44507159 | ID=cds.MS.gene46441.t1;Parent=MS.gene46441.t1 |
| chr1.2 | exon | 44506089 | 44506259 | 44506089 | ID=MS.gene46441.t1.exon2;Parent=MS.gene46441.t1 |
| chr1.2 | CDS | 44506089 | 44506259 | 44506089 | ID=cds.MS.gene46441.t1;Parent=MS.gene46441.t1 |
| chr1.2 | exon | 44505005 | 44505102 | 44505005 | ID=MS.gene46441.t1.exon3;Parent=MS.gene46441.t1 |
| chr1.2 | CDS | 44505005 | 44505102 | 44505005 | ID=cds.MS.gene46441.t1;Parent=MS.gene46441.t1 |
| Gene Sequence |
| Protein sequence |
