AlfalfaGEDB | MS.gene46480

M. sativa cultivar XinJiangDaYe / MS.gene46480

KEGG: -
GO: -
PFAM: PF17035.8

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46480.t1	KEH25663.1	96.2	182	7	0	1	182	157	338	1.10E-86	329.3

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46480.t1	Q84XV2	50.5	190	84	1	1	180	196	385	4.6e-41	169.1

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46480.t1	A0A072U971	96.2	182	7	0	1	182	157	338	8.0e-87	329.3

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049825	MS.gene46480	0.805823	1.11E-49	-1.69E-46
MS.gene051574	MS.gene46480	0.807978	3.88E-50	-1.69E-46
MS.gene052519	MS.gene46480	0.821063	4.93E-53	-1.69E-46
MS.gene052773	MS.gene46480	0.800304	1.53E-48	-1.69E-46
MS.gene053221	MS.gene46480	0.811148	8.09E-51	-1.69E-46
MS.gene05415	MS.gene46480	0.813872	2.05E-51	-1.69E-46
MS.gene058037	MS.gene46480	0.806956	6.40E-50	-1.69E-46
MS.gene058625	MS.gene46480	0.800041	1.74E-48	-1.69E-46
MS.gene05954	MS.gene46480	0.82674	2.30E-54	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46480.t1	MTR_6g033375	96.154	182	7	0	1	182	157	338	1.33e-124	354
MS.gene46480.t1	MTR_6g045290	90.000	160	14	1	1	158	131	290	5.93e-84	256
MS.gene46480.t1	MTR_8g070660	55.030	169	75	1	1	168	182	350	1.06e-53	174
MS.gene46480.t1	MTR_5g069490	46.980	149	65	1	1	149	187	321	2.55e-34	124
MS.gene46480.t1	MTR_2g437500	44.167	120	67	0	36	155	1	120	4.48e-30	107
MS.gene46480.t1	MTR_2g437920	42.690	171	83	3	1	164	220	382	1.25e-28	109
MS.gene46480.t1	MTR_8g070660	59.211	76	31	0	1	76	182	257	4.14e-19	82.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46480.t1	AT2G34900	52.105	190	81	2	1	180	86	275	1.06e-59	187
MS.gene46480.t1	AT2G34900	52.105	190	81	2	1	180	196	385	1.24e-58	188
MS.gene46480.t1	AT3G52280	58.042	143	60	0	1	143	200	342	2.41e-44	151
MS.gene46480.t1	AT3G52280	58.042	143	60	0	1	143	183	325	2.67e-44	150

Find 0 sgRNAs with CRISPR-Local

Find 30 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	AAAAAAGTTTAATCTCCACA+AGG	+	10858:42939-42958	None:intergenic	25.0%
!!!	GAGATTAAACTTTTTTGTCA+AGG	-	10858:42943-42962	MS.gene46480:CDS	25.0%
	AACTTTACTGGAAAAGTTTG+AGG	-	10858:42556-42575	MS.gene46480:CDS	30.0%
!!	TTGGAAGTTTGGATTAGTTT+GGG	+	10858:42867-42886	None:intergenic	30.0%
!!!	ATTTTTTAACAACCATCTCC+CGG	+	10858:42751-42770	None:intergenic	30.0%
	ACTGAAGAGAAGAGAAATCT+TGG	-	10858:42785-42804	MS.gene46480:CDS	35.0%
	ATGTACATTTAGAAGAGCTC+CGG	-	10858:42729-42748	MS.gene46480:CDS	35.0%
	TGGAAAAGTTTGAGGAGAAA+TGG	-	10858:42564-42583	MS.gene46480:CDS	35.0%
!	AAGAATTCAGAAAGCATGGA+TGG	-	10858:42986-43005	MS.gene46480:CDS	35.0%
!!	CTTGGAAGTTTGGATTAGTT+TGG	+	10858:42868-42887	None:intergenic	35.0%
!!!	CTTTTCTTCGTTTGTTGTTC+AGG	+	10858:43021-43040	None:intergenic	35.0%
	AGAAGCAGCTCATGCTAAAA+TGG	-	10858:42673-42692	MS.gene46480:CDS	40.0%
	GAGCAAGAATTCAGAAAGCA+TGG	-	10858:42982-43001	MS.gene46480:CDS	40.0%
	TAGAGACTTGAGTAATGAGC+TGG	-	10858:42697-42716	MS.gene46480:CDS	40.0%
	TGCTTCTTGAGCAAATTGCA+TGG	+	10858:42660-42679	None:intergenic	40.0%
	TGCTTTCTGAATTCTTGCTC+TGG	+	10858:42982-43001	None:intergenic	40.0%
	TGTACATTTAGAAGAGCTCC+GGG	-	10858:42730-42749	MS.gene46480:CDS	40.0%
!	TGACGATCTTAGAAGAGCAT+TGG	-	10858:42832-42851	MS.gene46480:CDS	40.0%
!!	AATGCTCTTCTAAGATCGTC+AGG	+	10858:42833-42852	None:intergenic	40.0%
	AAGAGGAAGAAGCTGAAGCA+CGG	-	10858:42630-42649	MS.gene46480:CDS	45.0%
	AAGATCGTCAGGAGACAGTT+TGG	+	10858:42822-42841	None:intergenic	45.0%
	AGAGGAAACTAGACGAGAAG+AGG	-	10858:42613-42632	MS.gene46480:CDS	45.0%
	GTTTCCTCTTCAGCAACTCT+AGG	+	10858:42602-42621	None:intergenic	45.0%
	TCAGCATTCGCTTGGAAGTT+TGG	+	10858:42878-42897	None:intergenic	45.0%
	CTCAGAGTGAGTCTACCTTG+TGG	-	10858:42921-42940	MS.gene46480:CDS	50.0%
	TCTGCCTAGAGTTGCTGAAG+AGG	-	10858:42595-42614	MS.gene46480:CDS	50.0%
	TTTAGAAGAGCTCCGGGAGA+TGG	-	10858:42736-42755	MS.gene46480:CDS	50.0%
	CTTCCAAGCGAATGCTGACG+AGG	-	10858:42880-42899	MS.gene46480:CDS	55.0%
	CCAAGCGAATGCTGACGAGG+TGG	-	10858:42883-42902	MS.gene46480:CDS	60.0%
	CCACCTCGTCAGCATTCGCT+TGG	+	10858:42886-42905	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
10858	gene	42548	43096	42548	ID=MS.gene46480
10858	mRNA	42548	43096	42548	ID=MS.gene46480.t1;Parent=MS.gene46480
10858	exon	42548	43096	42548	ID=MS.gene46480.t1.exon1;Parent=MS.gene46480.t1
10858	CDS	42548	43096	42548	ID=cds.MS.gene46480.t1;Parent=MS.gene46480.t1

Gene Sequence

>MS.gene46480

ATGGCAAAAACTTTACTGGAAAAGTTTGAGGAGAAATGGTTGCAATTTCTGCCTAGAGTTGCTGAAGAGGAAACTAGACGAGAAGAGGAAGAAGCTGAAGCACGGTTAGCCATGCAATTTGCTCAAGAAGCAGCTCATGCTAAAATGGCTAGAGACTTGAGTAATGAGCTGGATGAAGTTGATGTACATTTAGAAGAGCTCCGGGAGATGGTTGTTAAAAAATGCAGAAAAATGTCAACTGAAGAGAAGAGAAATCTTGGAATTGCTCTCACCAAACTGTCTCCTGACGATCTTAGAAGAGCATTGGATATTGTTGCCCAAACTAATCCAAACTTCCAAGCGAATGCTGACGAGGTGGATCTTGACATCGATGCTCAGAGTGAGTCTACCTTGTGGAGATTAAACTTTTTTGTCAAGGATGCTCTTGAAGTCCAGAGCAAGAATTCAGAAAGCATGGATGGCGATGAAAACCTGAACAACAAACGAAGAAAAGAATTATGCGATGCTATTGCAAATGTTTCGAAGAAGAAGACCAAGAAGCCTACTTGA

Protein sequence

>MS.gene46480.t1

MAKTLLEKFEEKWLQFLPRVAEEETRREEEEAEARLAMQFAQEAAHAKMARDLSNELDEVDVHLEELREMVVKKCRKMSTEEKRNLGIALTKLSPDDLRRALDIVAQTNPNFQANADEVDLDIDAQSESTLWRLNFFVKDALEVQSKNSESMDGDENLNNKRRKELCDAIANVSKKKTKKPT